OA17634A - Anti-CD52 antibodies. - Google Patents

Anti-CD52 antibodies. Download PDF

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Publication number
OA17634A
OA17634A OA1201500378 OA17634A OA 17634 A OA17634 A OA 17634A OA 1201500378 OA1201500378 OA 1201500378 OA 17634 A OA17634 A OA 17634A
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OAPI
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antibody
seq
nos
antibodies
light chain
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OA1201500378
Inventor
Huawei Qiu
Ronnie Rong Wei
Clark Qun Pan
Rebecca Sendak
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Genzyme Corporation
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Publication of OA17634A publication Critical patent/OA17634A/en

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Abstract

Anti-human CD52 antibodies and antigenbinding fragments thereof are provided. Also provided are isolated nucleic acids, recombinant vectors and host cells for making the antibodies and fragments. The antibodies and fragments can be used in therapeutic applications to treat, for example, autoimmune diseases, cancer, and graft rejection.

Description

ANTI-CD52 ANTIBODIES
SEQUENCE LISTING [0001] The instant application contains a Sequence Listing that has been submitted electronically as a text file in ASCII format and is hereby incorporated by reference in its entirety. Said text file, created on March 11, 2014, is named 001662-0041WOl_SL.txt and is 142,582 bytes in size.
FIELD OF THE INVENTION [0002] This invention relates generally to antibodies, and more specifically to antibodies having binding specificity for human CD52.
CROSS-REFERENCE TO RELATED APPLICATIONS [0003] This application claims priority from United States provisional application 61/794,576, filed on March 15,2013. The disclosure of this provisional application is incorporated herein by reference in its entirety.
BACKGROUND OF THE INVENTION [0004] CD52 is a glycosylated, glycosylphosphatidylinositol (GPI)-anchored cell surface protein found in abundance (500,000 molecules/cell) on a variety of normal and malignant lymphoid cells (e.g., T and B cells). See, e.g., Haie et al., J Biol Regul
Homeost Agents 15:386-391 (2001); Huh et al., Blood 92: Abstract 4199 (1998);
Elsner et al., Blood 88:4684-4693 (1996); Gilleece et al., Blood 82:807-812 (1993);
Rodig et al., Clin Cancer Res 12:7174-7179 (2006); Ginaldi et al., LeukRes 22:185191 (1998). CD52 is expressed at lower levels on myeloid cells such as monocytes, k 0 macrophages, and dendritic cells, with little expression found on mature natural killer (NK) cells, neutrophils, and hematological stem cells. Id. In ail, CD52 is présent on at least 95% of ail human peripheral blood lymphocytes and monocytes/macrophages (Haie G, et al., “The CAMPATH-1 antigen (CD52),” Tissue Antigens, 35:178-327 (1990)). CD52 is also produced by épithélial cells in the epididymis and duct deferens, and is acquired by sperm during passage through the génital tract (Haie et al., 2001, supra; Domagala et al., Med Sci Monit 7:325-331 (2001)). The exact biological function of CD52 remains unclear but some evidence suggests that it may be involved in T cell migration and co-stimulation (Rowan et al., Int Immunol 7:69-77 (1995); Masuyama et al., JExp Med 189:979-989 (1999); Watanabe et al., Clin Immunol 120:247-259 (2006)).
[0005] Several anti-CD52 monoclonal antibodies hâve been developed. Campath1H® (also known as alemtuzumab, Campath®, MabCampath®) is a humanized antihuman CD52 monoclonal antibody that exhibits potent in vitro cytotoxic effects (antibody-dependent cell mediated cytotoxicity (ADCC) and complement-dependent cytotoxicity (CDC)). Alemtuzumab recognizes an epitope that consists of the carboxy terminal four amino acids of the mature CD52 protein and a portion of the negatively charged GPI anchor. Additional anti-human CD52 monoclonal antibodies hâve been generated. However, the binding affmity of some of these antibodies decreases in storage and under certain pH and température conditions. Thus, a need exists for antiCD52 antibodies that hâve a reduced propensity to undergo this change.
SUMMARY OF THE INVENTION [0006] The invention features anti-human CD52 antibodies that hâve been engineered to retain binding affmity over time and under high pH and température conditions. The terms “antibody” and “immunoglobulin” are used interchangeably herein. Isolated nucleic acids, recombinant vectors and host cells comprising a sequence that encodes an anti-CD52 antibody light chain or heavy chain, and a method of preparing an anti-CD52 antibody are also provided.
[0007] Ab26 is a humanized anti-human CD52 monoclonal antibody having a heavy chain amino acid sequence of SEQ ID NO: 3 minus the signal sequence and a light chain amino acid sequence of SEQ ID NO: 4 minus the signal sequence. Ab26 has reduced CD52 binding affînity and potency over time in storage. We hâve unexpectedly discovered that variants of Ab26 with certain single amino acid substitutions at position 11 of the light chain CDR1 (e.g., monoclonal antibodies Ab21, Ab 16, and Ab20) not only retain or surpass Ab26’s human CD52-binding affinity, but also demonstrate significantly improved stability compared to Ab26. The variant antibodies such as Ab21, Ab 16, and Ab20 hâve demonstrated comparable or improved biological potency in vitro and in vivo as compared to Ab26. These variants are useful for therapeutic and diagnostic applications.
[0008] In some embodiments, the anti-human CD52 antibody or antigen-binding fragment of the invention comprises a heavy chain variable région and a light chain variable région, wherein said heavy chain variable région comprises: the heavy chain CDR1 of SEQ ID NO: 7; the heavy chain CDR2 of SEQ ID NO: 8; and the heavy chain CDR3 of SEQ ID NO: 9, and wherein said light chain variable région comprises the light chain CDR1 of SEQ ID NO: 86; the light chain CDR2 of SEQ ID NO: 34; and the light chain CDR3 of SEQ ID NO: 35. In further embodiments, residue 11 in SEQ ID NO: 86 may be K, R, Q, H, S, Y, A, D, E, F, I, L, M, N, T, or V. In one embodiment, residue 11 in SEQ ID NO: 86 is K. In another embodiment, residue 11 in SEQ ID NO: 86 is R. In yet another embodiment, residue 11 in SEQ ID NO: 86 is Q.
[0009] In some embodiments, the heavy chain variable région of the anti-CD52 antibody or fragment comprises SEQ ID NO: 59. In additional embodiments, the light chain variable région of the anti-CD52 antibody or fragment comprises a sequence selected from the group consisting of SEQ ID NOs: 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, and 83. For example, the heavy and light chains of the antibody or fragment of the invention may comprise: a) SEQ ID NOs: 59 and 68, respectively; b) SEQ ID NOs: 59 and 69, respectively; c) SEQ ID NOs: 59 and 70, respectively; d) SEQ ID NOs: 59 and 71, respectively; e) SEQ ID NOs: 59 and 72, respectively; f) SEQ ID NOs: 59 and 73, respectively; g) SEQ ID NOs: 59 and 74, respectively; h) SEQ ID NOs: 59 and 75, respectively; i) SEQ ID NOs: 59 and 76, respectively; j) SEQ ID NOs: 59 and 77, respectively; k) SEQ ID NOs: 59 and 78, respectively; 1) SEQ ID NOs: 59 and 79, respectively; m) SEQ ID NOs: 59 and 80, respectively; n) SEQ ID NOs: 59 and 81, respectively; o) SEQ ID NOs: 59 and 82, respectively; or p) SEQ ID NOs: 59 and 83, respectively.
[0010] Τη some embodiments, the antibody or fragment comprises a heavy chain amino acid sequence of SEQ ID NO: 3 without the signal sequence. In additional embodiments, the antibody or fragment comprises a light chain amino acid sequence selected from the group consisting of SEQ ID NOs: 43, 44,45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, and 58. For example, the antibody or fragment may comprise (a) a heavy chain amino acid sequence of SEQ ID NO: 3 without the signal sequence and a light chain amino acid sequence of SEQ ID NO: 49; (b) a heavy chain amino acid sequence of SEQ ID NO: 3 without the signal sequence and a light chain amino acid sequence of SEQ ID NO: 53; or (c) a heavy chain amino acid sequence of SEQ ID NO: 3 without the signal sequence and a light chain amino acid sequence of SEQ ID NO: 54.
[0011] In some embodiments, the antibody of the invention is an immunoglobulin G (IgG). In additional embodiments, the antibody comprises a human Fc région (e.g., a human IgGl, IgG2, IgG3, or IgG4 Fc région). The invention also encompasses an antigen-binding fragment of any of the antibodies of the invention, wherein said fragment is selected from the group consisting of an scFv fragment, an Fv fragment, an Fab fragment, an F(ab')2 fragment, a minibody, a diabody, a triabody, and a tetrabody.
[0012] In some embodiments, the antibody of the invention is monoclonal. In further embodiments the antibody and antigen-binding fragment is humanized. The heavy chain C-terminal lysine of an antibody or fragment of the invention may optionally be cleaved.
[0013] The invention also relates to an isolated nucleic acid molécule comprising a nucléotide sequence that encodes the heavy chain or an antigen-binding fragment thereof, or the light chain or an antigen-binding fragment thereof, or both, of an antibody. In some embodiments, the isolated nucleic acid molécule comprises the nucléotide sequence of SEQ IDNO: 95, 96, 97, 98, 99,100, 101, 102,103, 104, 105, 106, 107, 108, 109, 110, 119, 120, 121, 122, 123, 124, 125, 126,127, 128, 129, 130, 131, 132,133, or 134. The invention also encompasses a recombinant vector (e.g., an expression vector) comprising said nucleic acid molécule. In some embodiments, the invention encompasses an isolated host cell comprising said vector.
[0014] The invention also encompasses an isolated cell line that produces an antiCD52 antibody or fragment described herein or the heavy or light chain of said antibody or fragment. In some embodiments, the invention relates to a method of making an anti-human CD52 antibody or an antigen-binding fragment thereof, comprising (1) maintaining the host cell or the cell line described herein under conditions appropriate for expression of the antibody or fragment; and (2) recovering the antibody or fragment.
[0015] The invention encompasses a composition comprising the antibody or antigen-binding fragment described herein and a pharmaceutically acceptable vehicle or carrier.
[0016] The invention relates to a method for treating a patient in need thereof, comprising administering to the patient an effective amount of the antibody or an antigen-binding fragment described herein. In some embodiments, the invention encompasses a method for treating an autoimmune disease (e.g., multiple sclerosis) in a patient in need thereof, comprising administering to the patient an antibody or an antigen-binding fragment described herein. In some embodiments, the invention encompasses a method for treating cancer (e.g., chronic lymphocytic leukemia) in a patient in need thereof, comprising administering to the patient an antibody or an antigen-binding fragment described herein. The invention also relates to a method of inhibiting angiogenesis in a patient in need thereof, comprising administering to the patient an antibody or an antigen-binding fragment described herein.
[0017] In some embodiments, the invention relates to use of the antibody or antigen-binding fragment described herein for the treatment of, or the préparation of a médicament for treating, an autoimmune disease (e.g, multiple sclerosis) in a patient in need thereof. The invention also relates to use of the antibody or antigen-binding fragment described herein for the treatment of, or the préparation of a médicament for treating, cancer (e.g, chronic lymphocytic leukemia) in a patient in need thereof. The invention further relates to use of the antibody or antigen-binding fragment described herein for the treatment of excessive angiogenesis, or for the préparation of a médicament for inhibiting angiogenesis, in a patient in need thereof.
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BRIEF DESCRIPTION OF THE DRAWINGS [0018] The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.
[0019] FIG. 1 depicts results from quick affinity screening of anti-CD52 antibodies. The upper panel is a flow chart of the préparation of the antibodies. The middle panel graphs and lower panel tables show the results of BIACORE™ binding assays and Octet expression level measurements.
[0020] FIG. 2 depicts results from experiments characterizing purified anti-CD52 antibodies. The upper panel is a photograph of an SDS-PAGE gel showing the séparation of the heavy chain and light chain of the anti-CD52 antibodies. Molecular weight markers are shown in the lane marked (M). The graph and table in the lower panels show the results of BIACORE™ binding assays.
[0021] FIG. 3 depicts photographs of SDS-PAGE gels showing préparations of Ab24 and Ab 10 antibodies produced in CHO cells. The gels also show a control antiCD52 (CTL) antibody and the Abl antibody. The 100kD species and LC clipping are indicated with arrows.
[0022] FIG. 4 depicts a photograph of an SDS-PAGE gel showing the lOOkD species found in Ab24 and Ab 10 antibodies with a “heavy-chain only” dimer illustration on the right. N-terminal sequencing results are also shown.
[0023] FIG. 5 depicts results from experiments characterizing additional anti-CD52 antibodies. The table and graphs show the results of BIACORE™ binding assays and Octet expression level measurements. “KGN” refers to an anti-CD52 antibody with the heavy chain sequence of SEQ ID NO: 3 and the light chain sequence of SEQ ID NO: 2.
[0024] FIG. 6 depicts results from experiments characterizing CD52 binding of purified anti-CD52 antibodies. The left panel is a photograph of an SDS-PAGE gel showing the heavy chain and light chain of the wild-type (CTL) and other antibodies.
Molecular weight markers are shown in the lane marked (M). The right panel graph shows the results of BIACORE™ binding assays.
[0025] FIG. 7 is a graph depicting results from a CDC assay of a control anti-CD52 antibody and antibodies Ab21, Ab 16, and Ab20.
» [0026] FIG. 8 depicts results of assays for CD52+ cell-depleting activity of a control anti-CD52 antibody (CTL) and antibodies Ab21, Ab 16, and Ab20 in human CD52 transgenic mice. The graph on the left shows results from blood samples. The graph on the right shows results from spleen samples.
[0027] FIG. 9 shows the amino acid sequence of a wild-type human CD52 protein (GenBank Accession No. AAH00644.1) (SEQ ID NO: 1).
[0028] FIG. 10 shows the full-length heavy chain amino acid sequence of antibodies Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abl 1, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, Ab25, and KGN (SEQ ID NO: 3) and the full-length light chain amino acid sequence of antibody Ab26 (SEQ ID NO: 4). The signal sequences are boldfaced and italicized and the CDRs are underlined.
[0029] FIG. 11 shows the full-length heavy chain nucleic acid sequence of antibodies Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abl 1, Ab 12, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, Ab25, and KGN (SEQ ID NO: 5) and the full-length light chain nucleic acid sequences of antibodies Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abl 1, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, Ab25, and KGN. The signal sequences are underlined, and the open reading frames are in boldface.
[0030] FIG. 12 shows the amino acid sequences of the H-CDR1 (SEQ ID NO: 7), H-CDR2 (SEQ ID NO: 8), H-CDR3 (SEQ ID NO: 9), L-CDR2 (SEQ ID NO: 34), and L-CDR3 (SEQ ID NO: 35) of antibodies Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, and Ab25.
[0031] FIG. 13 shows the amino acid sequences ofthe L-CDR1 of antibodies Abl,
Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6,
Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, Ab25, and Ab26.
[0032] FIG. 14 shows the full-length light chain amino acid sequences of antibodies
Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6,
Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, and Ab25. The CDRs are underlined.
[0033] FIG. 15 shows the heavy and light chain variable domain amino acid sequences of antibodies Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, Ab 10, Abl 1, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, and Ab25. The CDRs are underlined.
[0034] FIG. 16 shows the nucleic acid sequences of the heavy chain variable domain and the light chain variable domains of antibodies Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abl 1, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, Ab25, and KGN.
[0035] FIG. 17 depicts results from experiments characterizing the Abl antibody purified from HEK293 cells. The graph and table show results of BIACORE™ assays measuring affinity of the Abl and two préparations of Ab26 (CTL1 and CTL2) for a CD52 peptide. The upper right panel is a photograph of a reducing SDS-PAGE gel showing the heavy chain (HC) and light chain (LC) of two préparations of Ab26 (CTL1 and CTL2) and Abl antibodies.
[0036] FIG. 18 depicts results from experiments characterizing the Abl antibody purified from CHO cells. The graphs show results of BIACORE™ assays measuring affinity of the Abl antibody (lower panel) and Ab26 antibody (CTL) (upper panel) for a CD52 peptide.
[0037] FIG. 19 is a graph depicting results from a CDC assay of the Abl antibody and Ab26 antibody (Control). The results are expressed in relative fluorescence units (RFU) as a function of final concentration in mg/ml of the antibody.
[0038] FIG. 20 depicts results from stability screening of anti-CD52 antibodies. The upper left panel graph shows Kd (nM) as a function of time (weeks) at 45°C and pH 7.2 for Ab26 (CTL) and variant antibodies. The upper right panel graph shows affinity relative to T0 as a function of time (weeks) at 45°C and pH 7.2 for Ab26 (CTL) and variant antibodies.
[0039] FIG. 21 depicts results from experiments testing the effect of incubation in three component buffer on stability of anti-CD52 antibodies. The upper left panel graph shows Kd (nM) at Week 0, Week 2, and Week 4 at 37°C and pH 7.5 for two préparations of Ab26 (CTL1 and CTL2) and variant antibodies. The upper right panel graph shows Kd (nM) at Week 0, Week 2, and Week 4 at 45°C and pH 7.4 for Ab26 (CTL) and variant antibodies.
[0040] FIG. 22 depicts results from a size-exclusion chromatography (SEC)-HPLC analysis of Ab26 (CTL), Ab21, Abl6, and Ab20 after incubation at 45°C.
DETAILED DESCRIPTION OF THE INVENTION [0041] This invention is based on our discovery that certain anti-CD52 antibodies lose stability and demonstrate reduced binding affinity over time in storage or under certain pH and température conditions. We hâve generated variant antibodies comprising amino acid substitutions at a single position (position 11) in the light chain CDR1 (L-CDR1) of the parent antibodies. We hâve discovered that some of these variant antibodies demonstrate not only similar or improved antigen-binding characteristics and biological activity, including in vivo potency, but also enhanced stability, as compared to the parent antibody.
[0042] Included in the présent invention are anti-human CD52 antibodies, antigenbinding fragments (i.e., portions) of the antibodies, the light chains of the antibodies, the heavy chains of the antibodies, and fragments of these light chains or heavy chains. The invention relates to mature antibodies or chains thereof, such as glycosylated antibodies, as well as immature or precursor antibody protein. The invention also relates to nucleic acid molécules (e.g., vectors) that encode both these immature or mature proteins, to host cells that comprise such nucleic acids, to methods of producing immature and mature proteins, and to methods of using the antibodies.
[0043] The antibodies and antigen-binding portions of this invention can be used to treat a subject in need thereof, e.g., a human patient, for a variety of diseases and conditions mediated or caused by CD52-bearing cells, such as certain immunemediated disease (IMD) indications. A mechanism of action may be that the antiCD52 antibodies deplete those cells (e.g., lymphocytes or cancerous CD52+ cells) by causing cell death. For example, the antibodies can be used to treat auto-immune diseases (e.g., multiple sclerosis (MS), rheumatoid arthritis, systemic lupus erythematosus, vasculitis, myositis, and Wegener’s disease) through lymphocyte déplétion—a type of immunosuppression achieved by reducing the population of circulating lymphocytes, e.g., T cells and/or B cells, resulting in lymphopenia. The antibodies of the invention also can be used to treat cancer, for example, leukemias (e.g, chronic lymphocytic leukemia) and lymphomas (e.g., non-Hodgkin’s lymphoma) or used in tissue transplantation (e.g., solid organ transplants (e.g., kidney transplant) and stem cell transplants). The antibodies of this invention also can be used to enrich hematopoietic stem cells, for example, in ex vivo applications (See, e.g., Lim étal., J. Hematology & Oncology 1:19 (2008)).
Antigen-Binding Properties of the Présent Antibodies [0044] The antibodies of this invention hâve binding specificity (e.g., epitopic specificity) for, or are sélective for binding to, human CD52 or a portion thereof. These antibodies bind specifically to a CD52 molécule, and do not bind specifically to non-CD52 molécules. Spécifie binding between an anti-CD52 antibody and CD52 can be determined, for example, by measuring EC50 of the antibody’s binding to CD52+ cells by flow cytometry. Spécifie binding can be indicated by an EC50 of less than 10 pg/ml (e.g., as determined by flow cytometry). The antibodies described herein can hâve binding specificity for a human CD52 or a fragment thereof. Binding assays can be performed with an isolated or recombinant human CD52; peptides derived from human CD52; or cells expressing human CD52 (e.g., human T and/or B cells, recombinant host cells expressing a nucleic acid encoding human CD52, or cell membrane fractions of such cells). In addition, the antibodies can hâve binding specificity for one or more forms of human CD52 (e.g., glycosylated human CD52; de-glycosylated human CD52; non-glycosylated human CD52; and allelic variants). In one embodiment, the antibodies hâve binding specificity for a naturally occurring, endogenous or wild-type human CD52. The amino acid sequence of a wild-type human CD52 is set out in FIG. 9 (SEQ ID NO: 1).
[0045] “Antigen-binding affinity” is a term of art that describes the strength of a binding interaction and typically refers to the overall strength of binding of an antibody to its antigen. In some embodiments, the présent antibody binds to human CD52 with an affinity indicated by, e.g., (1) a KD (KD=Koff(kd)/Kon (ka)) of 1x10’7 M or less, preferably lxlO’8 M or less, more preferably lxlO’9 M or less, advantageously lxlO'10 M or less, and most preferably lxlO'11 M or lxlO'12. For example, the Kd ranges from 100 nM to 1 pM (i.e., lxlO’7 to 1x10'12M), from 50 nM to 1 pM, from 5 nM to 1 pM, or from 1 nM to 1 pM. A desired antigen-binding affinity may also be indicated by a Koff rate constant of 5xl0_1 s’1 or less, preferably lxlO'2 s’1 or less, advantageously lxlO’3 s’1 or less, more preferably lxlO4 s'1 or less, still more preferably lxlO5 s'1 or less, and most preferably lxlO'6 s-1 or less, as determined by surface plasmon résonance. For example, the Koff rate constant may range from 5x10’ 1 s'1 to lxlO'7 s'1, from lxlO’2 s’1 to lxlO6 s’1, or from 5xl0’3 s’1 to lxlO’5 s’1. A desired antigen-binding strength in a particular assay or setting may also be indicated by an EC50 of no more than 10 pg/ml, e.g., an EC50 of 0.1-10 pg/ml.
[0046] The antibodies of this invention include those that bind to an epitope on CD52 that is the same as, or overlaps with, the CD52 epitope bound by antibody Ab26, or any of its variants exemplifîed herein. Epitope binding can be readily determined using a variety of techniques such as compétitive binding assays. An “epitope” as used herein includes any protein déterminant capable of spécifie binding to an antibody. Epitopic déterminants generally consist of chemically active surface groupings of molécules such as amino acids and/or carbohydrate or sugar side chains and generally hâve spécifie three dimensional structural characteristics, as well as spécifie charge characteristics. An epitope may be “linear” or “conformational.” In a linear epitope, ail of the points of interaction between the protein and the interacting molécule (such as an antibody) occur linearly along the primary amino acid sequence of the protein. In a conformational epitope, the points of interaction occur across amino acid residues on the protein that are separated from one another in the primary polypeptide sequence.
[0047] In one embodiment, to détermine if a test antibody binds to the same or overlapping epitope of a particular anti-CD52 antibody of this invention, one allows the anti-CD52 antibody of the invention to bind to CD52 under saturating conditions and then measures the ability of the test antibody to bind to CD52. If the test antibody is able to bind to CD52 at the same time as the reference anti-CD52 antibody, then can infer that the test antibody binds to a different epitope than the reference CD52 antibody. However, if the test antibody is not able to bind to CD52 at the same time, then one can infer that the test antibody binds to an epitope that is the same as, or overlaps with, the epitope bound by the reference anti-CD52 antibody, or to an epitope that is in close proximity to the epitope bound by the reference antibody. This experiment can be performed using ELISA, RIA, BIACORE™, or flow cytometry. To test whether an anti-CD52 antibody cross-competes with another anti-CD52 antibody, one may use the compétition method described above in two directions, i.e., determining if the reference antibody blocks the test antibody and vice versa.
[0048] Epitope binning can also be useful to characterize the antibodies of this invention. The term “binning” refers to a method to group antibodies based on their antigen-binding characteristics. A high throughput process for “binning” antibodies based upon their cross-competition is described in International Patent Application Publication No. WO 03/48731. “Epitope binning” can be investigated by allowing an unlabeled form of an anti-CD52 antibody “A” to bind to a synthetic peptide corresponding to the sequence of CD52 or to CD52-positive cells. Subsequently a labeled second anti-CD52 antibody “B” is added and one can assess the amount of labeled antibody that can bind relative to a control sample where the cells or synthetic peptide hâve not been exposed previously to anti-CD52 antibody “A.” Alternatively, anti-CD52 antibodies “A” and “B” can be labeled with different fluorochromes or chemicals enabling détection, and one can measure the quantifies of both labeled antibodies that can engage the CD52 antigen at the same time using a device capable of detecting the labels, or measure the amounts of both antibodies that simultaneously engage CD52-positive cells by flow cytometry. BIACORE™ and Octet technologies enable one to investigate the compétitive binding of unlabelled forms of antibodies. This use of unlabelled forms of antibodies is desired as the chemical modification of some antibodies can compromise the binding activity. See also the technology described in Jia et al., J. Immunol. Methods 288:91-98 (2004), which is useful in performing epitope binning.
[0049] In some embodiments, the antibodies of the invention bind human CD52 with an affinity similar to or better than that of antibody Ab26. In a particular embodiment, the antibodies of the invention hâve the same or similar epitopic specificity and biological fùnction (e.g., lymphocyte-depleting fùnction) of antibody Ab26. In one embodiment, the présent antibodies bind to an epitope comprising the QTSS amino acid residues of human CD52.
Structures of the Présent Antibodies and Antigen-Binding Fragments [0050] Naturally occurring antibodies hâve a common core structure in which two identical light chains (about 24 kD) and two identical heavy chains (about 55 or 70 kD) form a tetramer. The amino-terminal portion of each chain is known as the variable (V) région and can be distinguished from the more conserved constant (C) régions of the remainder of each chain. Within the variable région of the light chain (also called the Vl domain) is a C-terminal portion known as the J région. Within the variable région of the heavy chain (also called the Vh domain), there is a D région in addition to the J région. Most of the amino acid sequence variation in antibodies is confined to three separate locations in the V régions known as hypervariable régions or complementarity determining régions (CDRs), which are directly involved in antigen-binding. Proceeding from the amino-terminus, these régions are designated CDR1, CDR2 and CDR3, respectively. The CDRs are held in place by more conserved framework régions (FRs). Proceeding from the amino-terminus, these régions are designated FRI, FR2, FR3 and FR4, respectively. The locations of CDR and FR régions and a numbering System hâve been defined by Kabat et al. See, Kabat, E. A., et al., Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Départaient of Health and Human Services, U.S. Govemment Printing Office (1991); Chothia & Lesk, Canonical Structures for the Hypervariable Régions of Immunoglobulins, J. Mol. Biol., 196: 901-917 (1987); and the IMGT® numbering System (The International ImMunoGeneTics Iinformation System®; Lefranc, M.-P., The Immunologist 7,132-136 (1999)). Visual inspection and sequence analysis can be carried out to identify the CDR boundaries. For this invention, the CDR sequences are defined by using both the Kabat System and the IMGT system; that is, when the CDRs defined by the two Systems do not entirely overlap, ail the residues from the sequences defined by both Systems are included.
[0051] This invention features variants of parent antibody Ab26. The heavy and light chain amino acid and nucleic acid sequences of Ab26 are shown in Figures 10 and 11, respectively. Ab26 comprises the heavy chain amino acid sequence of SEQ ID NO: 3 without the signal sequence and the light chain amino acid sequence of SEQ ID NO: 4 without the signal sequence.
[0052] In some embodiments of the invention, the CDRs of the présent antibody differ from Ab26 in the light chain CDR1 amino sequence at residue 34 of the mature Ab26 protein. Some of these changes greatly improve the variant antibody’s stability without affecting its antigen-binding characteristics. If the residue 34 mutation reduces both antigen-binding affinity of the variant antibody, one or more additional mutations may be made in the antibody sequence (for example, in the L-CDR1, LCDR2, L-CDR2, H-CDR1, H-CDR2, or H-CDR3) to restore the affinity. In some embodiments, residue 34 is changed from G to K, R, Q, H, S, Y, A, D, E, F, I, L, M, N, T, or V. In some embodiments of the invention, the L-CDR1 sequence of the anti17634
CD52 antibody is selected from the group consisting of SEQ ID NOs: 24,29, 28, 22, 30, 33,18,19, 20, 21, 23, 25, 26,27, 31, and 32.
[0053] CDR sequences of the antibodies specifically illustrated herein are listed in Table 1 below by their SEQ ID NOs.
Table 1 SEQ ID NOs of Anti-CD52 Antibodies
Antibody H-CDR1 H-CDR2 H-CDR3 L-CDR1 L-CDR2 L-CDR3
Abl 7 8 9 11 34 35
Ab2 7 8 9 12 34 35
Ab3 7 8 9 13 34 35
Ab4 7 8 9 14 34 35
Ab5 7 8 9 15 34 35
Ab6 7 8 9 16 34 35
Ab7 7 8 9 17 34 35
AblO 7 8 9 18 34 35
Abll 7 8 9 19 34 35
Abl2 7 8 9 20 34 35
Abl 3 7 8 9 21 34 35
Abl4 7 8 9 22 34 35
Abl 5 7 8 9 23 34 35
Abl6 7 8 9 24 34 35
Abl 7 7 8 9 25 34 35
Abl 8 7 8 9 26 34 35
Abl 9 7 8 9 27 34 35
Ab20 7 8 9 28 34 35
Ab21 7 8 9 29 34 35
Ab22 7 8 9 30 34 35
Ab23 7 8 9 31 34 35
Ab24 7 8 9 32 34 35
Ab25 7 8 9 33 34 35
[0054] In some embodiments, the antibodies of the invention are humanized. The term “anti-CD52 humanized antibody” as used herein refers to an antibody comprising one or more light chain CDRs (CDR1, CDR2 and CDR3) and/or one or more heavy chain CDRs (CDR1, CDR2 and CDR3) of an anti-CD52 antibody of nonhuman origin, also referred to as the donor antibody (e.g., a murine anti-CD52 antibody); and at least a portion of an antibody of human origin (e.g., framework régions, or framework and constant régions, derived from a light chain and/or a heavy chain of human origin). For example, a humanized antibody is a CDR-grafted antibody with or without framework changes. In some embodiments, humanized antibodies are de-immunized antibodies. See, e.g., Carr U.S. Pat. 7,264,806, »
regarding de-immunized antibodies that hâve been modified to reduce the number of potential T-cell epitopes, thereby reducing the propensity for the antibody to elicit an immune response upon administration to a human.
[0055] Changes in the framework région, such as those that substitute a residue of the framework région of human origin with a residue from the corresponding position of the donor antibody, can be made. See Queen U.S. Pat. 5,530,101. One or more mutations, including délétions, insertions and substitutions of one or more amino acids in the framework région, can be made. If desired, framework mutations can be included in a humanized antibody, and sites for mutation can be selected using any suitable method, for example as described in WO 98/06248 and U.S. Pat. 6,407,213, the entire disclosures of which are incorporated by reference. In some cases, one or more amino acids flanking one or more CDRs (e.g., 1, 2, 3,4, 5, 6, 7, 8, 9,10,11, or 12 flanking amino acids) in the parental framework are also included in the humanized antibody to enhance antigen-binding affinity. Back mutations may optionally be made in the framework régions at one or more of the residues to improve CD52-binding affinity of the humanized antibody.
[0056] The antibodies of this invention may differ from antibody Ab26 by the addition, délétion or substitution (e.g., conservative substitution) of one or more residues, e.g., differing by up to 1, 2, 3,4, 5, 6, 7, 8, 9,10, 11, or 12 residues from the parental sequences.
[0057] By way of examples, the présent invention includes antibodies having a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 68; a heavy chain comprising one or more CDRs (e.g, ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 69; a heavy chain comprising one or more CDRs (e.g, ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 70; a heavy chain comprising one or more CDRs (e.g, ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 71 ; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 72; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 73; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 74; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 75; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 76; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three
CDRs) of SEQ ID NO: 77; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 78; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 79; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 80; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 81; a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 82; or a heavy chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ ID NO: 59 and a light chain comprising one or more CDRs (e.g., ail three CDRs) of SEQ IDNO: 83.
[0058] In one embodiment, an antibody of the invention has binding specificity for human CD52 and comprises heavy chain (H)-CDRl, H-CDR2, H-CDR3, light chain (L)-CDRl, L-CDR2, and L-CDR3 whose amino acid sequences are: a) SEQ ID NOs:
7, 8, 9, 18, 34, and 35, respectively; b) SEQ ID NOs: 7, 8, 9,19, 34, and 35, respectively; c) SEQ ID NOs: 7, 8, 9,20, 34, and 35, respectively; d) SEQ ID NOs: 7, 8,9,21,34, and 35, respectively; e) SEQ ID NOs: 7, 8, 9,22, 34, and 35, respectively; f) SEQ ID NOs: 7, 8, 9, 23, 34, and 35, respectively; g) SEQ ID NOs: 7,
8, 9, 24, 34, and 35, respectively; h) SEQ ID NOs: 7, 8, 9, 25, 34, and 35, respectively; i) SEQ ID NOs: 7, 8,9,26,34, and 35, respectively; j) SEQ ID NOs: 7, 8, 9, 27, 34, and 35, respectively; k) SEQ ID NOs: 7, 8, 9, 28, 34, and 35, * i respectively; 1) SEQ ID NOs: 7, 8, 9,29, 34, and 35, respectively; m) SEQ ID NOs: 7, 8, 9, 30, 34, and 35, respectively; n) SEQ ID NOs: 7, 8, 9, 31, 34, and 35, respectively; o) SEQ ID NOs: 7, 8, 9, 32,34, and 35, respectively; or p) SEQ ID NOs: 7, 8, 9, 33, 34, and 35, respectively.
[0059] In some embodiments, an antibody of the invention comprises the L-CDR1 of SEQ ID NO: 86 (KSSQSLLYSNXKTYLN), wherein X is a naturally occurring amino acid selected from D, E, K, R, H, Y, C, N, Q, S, T, A, V, L, I, M, P, F, or W or a non-standard (e.g, unnatural) amino acid.
[0060] The invention also relates to an antibody light chain of an antibody described herein. In one embodiment, the antibody light chain comprises an L-CDR1 selected from the group consisting of SEQ IDNOs: 18,19, 20, 21,22, 23, 24, 25, 26, 27,28, 29, 30, 31, 32, and 33. For example, the antibody has L-CDR1, L-CDR2, and LCDR3 whose amino acid sequences are: a) SEQ ID NOs: 18, 34, and 35, respectively;
b) SEQ ID NOs: 19, 34, and 35, respectively; c) SEQ ID NOs: 20, 34, and 35, respectively; d) SEQ ID NOs: 21,34, and 35, respectively; e) SEQ ID NOs: 22, 34, and 35, respectively; f) SEQ ID NOs: 23, 34, and 35, respectively; g) SEQ ID NOs: 24, 34, and 35, respectively; h) SEQ ID NOs: 25, 34, and 35, respectively; i) SEQ ID NOs: 26, 34, and 35, respectively; j) SEQ ID NOs: 27, 34, and 35, respectively; k) SEQ ID NOs: 28, 34, and 35, respectively; 1) SEQ ID NOs: 29, 34, and 35, respectively; m) SEQ ID NOs: 30, 34, and 35, respectively; n) SEQ ID NOs: 31, 34, and 35, respectively; o) SEQ ID NOs: 32, 34, and 35, respectively; or p) SEQ ID NOs: 33, 34, and 35, respectively.
[0061] Table 2 lists the sequence identifiers (SEQ ID NOs) of the amino acid sequences of the fui 1-length heavy and light chains and variable domains of antibodies that are specifîcally illustrated herein, as well as the nucléotide sequences encoding the heavy and light chains and variable domains.
Table 2 SEQ ID NOs of Anti-CD52 Antibodies
Antibody : I7ITT T T Jr uLL LdelNvrIH VARIABLE DOMAIN
Heavy Light Heavy Light
DNA Amino Acid DNA Amino Acid DNA Amino Acid DNA Amino Acid
Abl 5 3 112 36 84 59 88 61
Ab2 5 3 113 37 84 59 89 62
Ab3 5 3 114 38 84 59 90 63
Ab4 5 3 115 39 84 59 91 64
Ab5 5 3 116 40 84 59 92 65
Ab6 5 3 117 41 84 59 93 66
Ab7 5 3 118 42 84 59 94 67
AblO 5 3 119 43 84 59 95 68
Abll 5 3 120 44 84 59 96 69
Abl2 5 3 121 45 84 59 97 70
Abl 3 5 3 122 46 84 59 98 71
Abl4 5 3 123 47 84 59 99 72
Abl 5 5 3 124 48 84 59 100 73
Abl6 5 3 125 49 84 59 101 74
Abl 7 5 3 126 50 84 59 102 75
Abl 8 5 3 127 51 84 59 103 76
Abl9 5 3 128 52 84 59 104 77
Ab20 5 3 129 53 84 59 105 78
Ab21 5 3 130 54 84 59 106 79
Ab22 5 3 131 55 84 59 107 80
Ab23 5 3 132 56 84 59 108 81
Ab24 5 3 133 57 84 59 109 82
Ab25 5 3 134 58 84 59 110 83
[0062] In one embodiment, an antibody of this invention comprises a light chain comprising a variable domain (Vl) sequence of SEQ ID NO: 68, 69, 70, 71, 72, 73, 5 74, 75, 76, 77, 78, 79, 80, 81, 82, or 83. In another embodiment, the antibody comprises a light chain whose amino acid sequence comprises or consists of SEQ ID NO: 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, or 58.
[0063] In some embodiments, an antibody of this invention comprises a Vh and a Vl whose amino acid sequences comprise or consist of a) SEQ ID NOs: 59 and 68, respectively; b) SEQ ID NOs: 59 and 69, respectively; c) SEQ ID NOs: 59 and 70, respectively; d) SEQ ID NOs: 59 and 71, respectively; e) SEQ ID NOs: 59 and 72, respectively; f) SEQ ID NOs: 59 and 73, respectively; g) SEQ ID NOs: 59 and 74, respectively; h) SEQ ID NOs: 59 and 75, respectively; i) SEQ ID NOs: 59 and 76, respectively;]) SEQ ID NOs: 59 and 77, respectively; k) SEQ IDNOs: 59 and 78, respectively; 1) SEQ ID NOs: 59 and 79, respectively; m) SEQ ID NOs: 59 and 80, respectively; n) SEQ ID NOs: 59 and 81, respectively; o) SEQ ID NOs: 59 and 82, respectively; or p) SEQ ID NOs: 59 and 83, respectively.
[0064] In one embodiment, an antibody of this invention comprises a heavy chain (HC) and a light chain (LC) whose amino acid sequences comprise or consist of a) SEQ ID NOs: 3 and 43, respectively; b) SEQ ID NOs: 3 and 44, respectively; c) SEQ ID NOs: 3 and 45, respectively; d) SEQ ID NOs: 3 and 46, respectively; e) SEQ ID NOs: 3 and 47, respectively; f) SEQ ID NOs: 3 and 48, respectively; g) SEQ ID NOs: 3 and 49, respectively; h) SEQ JD NOs: 3 and 50, respectively; i) SEQ ID NOs: 3 and 51, respectively; j) SEQ ID NOs: 3 and 52, respectively; k) SEQ ID NOs: 3 and 53, respectively; 1) SEQ ID NOs: 3 and 54, respectively; m) SEQ ID NOs: 3 and 55, respectively; n) SEQ ID NOs: 3 and 56, respectively; o) SEQ ID NOs: 3 and 57, respectively; or p) SEQ ID NOs: 3 and 58, respectively; each sequence with or without the signal sequence, if présent.
[0065] Also provided herein are portions of whole antibodies, such as light chains or heavy chains of the antibodies, or a portion of the light and/or heavy chains. Portions of whole antibodies include antigen-binding portions of the whole antibodies. The terms of “antigen-binding fragment” and “antigen-binding portion” are used interchangeably herein. Antigen-binding fragments of antibodies include, for example, single chain antibodies, Fv fragments, Fab fragments, Fab’ fragments, F(ab’)2 fragments, Fd fragments, single chain Fv molécules (scFv), scFv-Fc fusions, bispecifîc single chain Fv dimers, minibodies, diabodies, triabodies, tetrabodies, domain-deleted antibodies and single domain antibodies (dAbs). See e.g., Nature Biotechnology 22(9):1161-1165 (2004)). Also within the invention are antigen17634 binding molécules comprising a Vh and/or a Vl. In the case of a Vh, the molécule may also comprise one or more of the CH1, hinge, CH2 and CH3 régions.
[0066] Antibody portion or fragments can be produced by enzymatic cleavage or by recombinant techniques. For instance, papain or pepsin cleavage can be used to generate Fab or F(ab’)2 fragments, respectively. Antibodies can also be produced in a variety of truncated forms using antibody genes in which one or more stop codons hâve been introduced upstream of the naturel stop site. For example, a recombinant construct encoding the heavy chain of an F(ab’)2 fragment can be designed to include DNA sequences encoding the CHi domain and hinge région of the heavy chain. An antigen-binding fragment retains the binding specificity of its parent antibody. Preferred antigen-binding fragments hâve binding specificity for a wild-type human CD52. Nucleic acid (e.g., DNA) sequences coding for humanized variable régions can be constructed using PCR mutagenesis methods to alter existing DNA sequences (See e.g., Kamman, M., et al., Nucl. Acids Res. 17:5404 (1989)). PCRprimers coding for the new CDRs can be hybridized to a DNA template of a previously humanized variable région which is based on the same, or a very similar, human variable région (Sato, K., et al., Cancer Research 53:851-856 (1993)). If a similar DNA sequence is not available for use as a template, a nucleic acid comprising a sequence encoding a variable région sequence can be constructed from synthetic oligonucleotides (See e.g., Kolbinger, F., Protein Engineering 8:971-980 (1993)). A sequence encoding a signal peptide can also be incorporated into the nucleic acid (e.g., on synthesis, upon insertion into a vector). If a signal peptide sequence is unavailable (e.g., not typically présent), a signal peptide sequence from another antibody can be used (See, e.g., Kettleborough, C. A., Protein Engineering 4:773-783 (1991)). Using these methods, methods described herein or other suitable methods, variants can readily be produced. Unless otherwise indicated, discussions of the making and using of the antibodies of this invention are applicable to the antigenbinding fragments of these antibodies.
[0067] The antibodies of the présent invention can be of any isotype or subtype, including IgG (e.g., IgGl, IgG2, IgG3, or IgG4), IgM, IgA (e.g, IgAl and IgA2), IgD and IgE. The antibodies may comprise a light chain derived from either human kappa or lambda light chain.
[0068] In another aspect, the invention provides a variant of an antibody or portion thereof as described herein, wherein said variant binds to human CD52 specifically but differs from the reference antibody or portion thereof by 1,2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acid substitutions (for example, in a CDR région, a FR région, or a constant domain). For example, the variant antibody is at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% identical to the reference antibody in the heavy chain, the heavy chain variable domain, the light chain, or the light chain variable domain.
[0069] Sequence similarity or identity for polypeptides is typically measured using sequence analysis software. Protein analysis software matches similar sequences using measures of similarity assigned to various substitutions, délétions and other modifications, including conservative amino acid substitutions. For instance, GCG contains programs such as “Gap” and “Bestfit” which can be used with default parameters to détermine sequence homology or sequence identity between closely related polypeptides, such as homologous polypeptides from different species of organisms or between a wild type protein and a mutein thereof. See, e.g., GCG Version 6.1. Polypeptide sequences also can be compared using FASTA using default or recommended parameters, a program in GCG Version 6.1. FASTA (e.g., FASTA2 and FASTA3) provides alignments and percent sequence identity of the régions of the best overlap between the query and search sequences (Pearson, Methods Enzymol. 183:63-98 (1990); Pearson, Methods Mol. Biol. 132:185-219 (2000)). Another preferred algorithm when comparing a sequence of the invention to a database containing a large number of sequences from different organisms is the computer program BLAST, especially blastp or tblastn, using default parameters. See, e.g., Altschul et al., J. Mol. Biol. 215:403-410 (1990); Altschul et al., Nucleic Acids Res. 25:3389-402 (1997); herein incorporated by reference.
[0070] As used herein, “amino acids” are represented by the full name thereof, by the three letter code corresponding thereto, or by the one-letter code corresponding thereto, as indicated in the following table:
Full Name Three-Letter Code One-Letter Code
Aspartic Acid Asp D
Glutamic Acid Glu E
Lysine Lys K
Arginine Arg R
Histidine His H
Tyrosine Tyr Y
Cysteine Cys C
Asparagine Asn N
Glutamine Gin Q
Serine Ser S
Threonine Thr T
Glycine Gly G
Alanine Ala A
Valine Val V
Leucine Leu L
Isoleucine Ile I
Méthionine Met M
Proline Pro P
Phenylalanine Phe F
Tryptophan Trp W
[0071] According to the invention, one type of amino acid substitution that may be made is to change one or more cysteines in the antibody, which may be chemically reactive, to another residue, such as, without limitation, alanine or serine. In one embodiment, there is a substitution of a non-canonical cysteine. The substitution can be made in a CDR or framework région of a variable domain or in the constant domain of an antibody. In some embodiments, the cysteine is canonical. Another type of amino acid substitution that may be made is to remove potential proteolytic sites in the antibody. Such sites may occur in a CDR or framework région of a variable domain or in the constant domain of an antibody. Substitution of cysteine residues and removal of proteolytic sites may decrease the risk of heterogeneity in the antibody product and thus increase its homogeneity. Another type of amino acid substitution is to eliminate asparagine-glycine pairs, which form potential deamidation sites, by altering one or both of the residues. In another aspect of the invention, the antibody may be deirnmunized to reduce its immunogenicity using the techniques described in, e.g., International Patent Application Publications WO 98/52976 and WO 00/34317.
[0072] Another type of amino acid substitution that may be made in one of the variants according to the invention is a conservative amino acid substitution. A “conservative amino acid substitution” is one in which an amino acid residue is substituted by another amino acid residue having a side chain R group with similar chemical properties (e.g., charge or hydrophobicity). In general, a conservative amino acid substitution will not substantially change the functional properties of a protein. In cases where two or more amino acid sequences differ from each other by conservative substitutions, the percent sequence identity or degree of similarity may be adjusted upwards to correct for the conservative nature of the substitution. Means for making this adjustment are well-known to those of skill in the art. See e.g., Pearson, Methods Mol. Biol. 243:307-31 (1994).
[0073] Examples of groups of amino acids that hâve side chains with similar chemical properties include 1) aliphatic side chains: glycine, alanine, valine, leucine, and isoleucine; 2) aliphatic-hydroxyl side chains: serine and threonine; 3) amidecontaining side chains: asparagine and glutamine; 4) aromatic side chains: phenylalanine, tyrosine, and tryptophan; 5) basic side chains: lysine, arginine, and histidine; 6) acidic side chains: aspartic acid and glutamic acid; and 7) sulfurcontaining side chains: cysteine and méthionine. Preferred conservative amino acids substitution groups are: valine-leucine-isoleucine, phenylalanine-tyrosine, lysinearginine, alanine-valine, glutamate-aspartate, and asparagine-glutamine. Altematively, a conservative replacement is any change having a positive value in the PAM250 log-likelihood matrix disclosed in Gonnet et al., Science 256:1443-45 (1992). A “moderately conservative” replacement is any change having a nonnegative value in the PAM250 log-likelihood matrix.
[0074] In certain embodiments, amino acid substitutions to an antibody or antigenbinding portion of the invention are those which: (1) reduce susceptibility to proteolysis, (2) reduce susceptibility to oxidation, (3) alter binding affinity for forming protein complexes, for example, to enhance ADCC and CDC activity of the antibody, (4) confer or modify other physicochemical or functional properties of such analogs, but still retain spécifie binding to human CD52, (5) remove C-terminal lysine, and (6) add or remove glycosylation sites. In some embodiments, the Cterminal lysine of the heavy chain of the anti-CD52 antibody of the invention is not présent (Lewis et al., Anal. Chem, 66(5): 585-595 (1994)).
[0075] In an aspect, the invention provides a new and novel polypeptide that is the light (or heavy) chain of an antibody of this invention, or that is a variable domaincontaining portion of the light (or heavy) chain. Such a polypeptide is useful because it can partner with an opposite heavy (or light) antibody chain to form a CD52binding molécule. Once an initial Vl or Vh domain of an antibody of the invention is selected, “mix and match” experiments may be performed, in which different pairs comprising the initially selected Vl or Vh segment are screened for CD52 binding to select preferred Vl/Vh pair combinations. One defined variable domain sequence may be used to engineer functional antibodies to CD52 by screening variable domain libraries for a répertoire of functional partner variable domains. See, for example, Clackson étal., Nature, 352:624-628 (1991); Portolano et al., J. Immunol., 150:880887 (1993); Beiboer et al., J. Mol. Biol., 296:833-849 (2000); Klimka et al., British Journal of Cancer,. 83:252-260 (2000).
[0076] For diagnostic or assay purposes (e.g., imaging to allow, for example, monitoring of thérapies), the antibody (e.g., antigen-binding fragment thereof) can comprise a détectable label. Suitable détectable labels and methods for labeling an antibody or antigen-binding fragment thereof are well known in the art. Suitable détectable labels include, for example, a radioisotope (e.g., as Indium-111, Technetium-99m or Iodine-131), positron emitting labels (e.g., Fluorine-19), paramagnetic ions (e.g., Gadlinium (III), Manganèse (II)), an epitope label (tag), an affinity label (e.g., biotin, avidin), a spin label, an enzyme, a fluorescent group or a chemiluminescent group. When labels are not employed, complex formation (e.g., between humanized antibody and human CD52) can be determined by surface plasmon résonance, ELISA, FACS, or other suitable methods.
[0077] Anti-CD52 antibodies and antigen-binding fragments used in the invention also may be conjugated, via, for example, chemical reactions or genetic modifications, to other moieties (e.g., pegylation moieties) that improve the antibodies’ pharmacokinetics such as half-life. In some embodiments, the anti-CD52 antibodies and antigen-binding fragments used in this invention can be linked to a suitable cytokine via, e.g., chemical conjugation or genetic modifications (e.g., appending the coding sequence of the cytokine in frame to an antibody coding sequence, thereby creating an antibody:cytokine fusion protein).
[0078] The invention also relates to immunoconjugates in which the antibody or antigen-binding fragment of the invention is coupled to another therapeutic agent, such as a bioactive compound (e.g., cytokines, superantigens, cytotoxic agents and toxins). For example, the antibody or fragment can be coupled to a molécule of plant or bacterial origin (or dérivative thereof), an interleukin-2 antibody, or diptheria toxin antibodies.
Stability of the Présent Antibodies [0079] The antibodies of the invention are stable in storage. The antibodies of the invention may hâve increased stability compared to the stability demonstrated by Ab26. The stability may be shown by measuring the binding affinity of an antibody to CD52 after a period in storage. To demonstrate stability, the antibody may be incubated at 37°C or 45°C and at pH 7.0, 7.5, or 8.0. The antibody may be incubated in buffer containing 10 mM succinate, 10 mM histidine, and 10 mM sodium phosphate, pH 7.5. The increased stability may extend for at least 1 week, for at least 2 weeks, for at least 3 weeks, for at least 4 weeks, for at least 5 weeks, for at least 6 weeks, for at least 7 weeks, for at least 8 weeks, for at least 9 weeks, or for at least 10 weeks.
Nucleic Acids and Recombinant Vectors [0080] The présent invention also relates to isolated and/or recombinant (including, e.g., essentially pure) nucleic acid molécules comprising sequences that encode an antibody, antigen-binding fragment, light chain, heavy chain, or variable domain of the présent invention.
[0081] Nucleic acids referred to herein as “isolated” or “purified” are nucleic acids which hâve been separated away from the nucleic acids of the genomic DNA or cellular RNA of their source of origin (e.g., as they exist in cells or in a mixture of nucleic acids such as a library), and include nucleic acids obtained by methods described herein or other suitable methods, including essentially pure nucleic acids, nucleic acids produced by chemical synthesis, by combinations of biological and chemical methods, and recombinant nucleic acids which are isolated (See e.g, Daugherty, B. L. et al., Nucleic Acids Res., 19(9): 2471-2476 (1991); Lewis, A. P. and J. S. Crowe, Gene, 101: 297-302 (1991)).
[0082] Nucleic acids referred to herein as “recombinant” are nucleic acids which hâve been produced by recombinant DNA methodology, including those nucleic acids that are generated by procedures which rely upon a method of artificial recombination, such as the polymerase chain reaction (PCR) and/or cloning into a vector using restriction enzymes. “Recombinant” nucleic acids are also those that resuit from recombination events that occur through the natural mechanisms of cells, but are selected for after the introduction to the cells of nucleic acids designed to allow and make probable a desired recombination event.
[0083] The présent invention also relates more specifically to isolated and/or recombinant nucleic acids comprising a nucléotide sequence which encodes an antibody that has binding specificity for human CD52, or a heavy or light chain, or a heavy chain variable région, or light chain variable région of said antibody..
[0084] In some embodiments, the nucleic acid molécule comprises a nucléotide sequence selected from the group consisting of SEQ ID NOs: 95, 96, 97, 98,99,100, 101,102,103,104,105,106,107, 108,109, or 110, which encodes the Vl amino acid sequence of an anti-CD52 antibody. In some embodiments, the nucleic acid molécule encodes a Vl amino acid sequence of SEQ ID NO: 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, or 83. In some embodiments, the nucleic acid molécule encodes a Vl amino acid sequence that is at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% identical to the Vl amino acid sequence of a reference antiCD52 antibody (for example, Ab26). The nucléotide sequence encoding the Vl amino acid sequence of Ab26 may be SEQ ID NO: 85. In some embodiments, the nucleic acid molécule encodes a Vl amino acid sequence comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 mutations compared to the Vl amino acid sequence of a reference anti-CD52 antibody (for example, Ab26). The mutations may be in CDRs or in FRs. [0085] In some embodiments, the nucleic acid molécule comprises a nucléotide sequence selected from the group consisting of SEQ ID NOs: 119,120,121,122,123, 124,125,126,127,128,129, 130,131,132, 133, or 134, which encodes the light chain amino acid sequence of an anti-CD52 antibody, either with or without a signal sequence. In some embodiments, the nucleic acid molécule encodes a light chain amino acid sequence of SEQ ID NO: 43, 44, 45,46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, or 58, either with or without a signal sequence. In some embodiments, the nucleic acid molécule encodes a light chain amino acid sequence that is at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% identical to the light chain amino acid sequence of a reference anti-CD52 antibody (for example, Ab26). The nucléotide sequence encoding the light chain amino acid sequence of Ab26 may be
SEQ ID NO: 6, with or without the signal sequence. In some embodiments, the nucleic acid molécule encodes a light chain amino acid sequence comprising 1, 2, 3, 4, 5, 6, 7, 8, 9,10,11, or 12 mutations compared to the light chain amino acid sequence of a reference anti-CD52 antibody (for example, Ab26). The mutations may be in CDRs, in FRs, or in constant domains.
[0086] In some embodiments, the nucleic acid molécule comprises a nucléotide sequence that encodes the Vh amino acid sequence of an anti-CD52 antibody. For example, this nucléotide sequence may be SEQ ID NO: 84. In some embodiments, the nucleic acid molécule encodes a Vh amino acid sequence that is at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% identical to the Vh amino acid sequence of a reference anti-CD52 antibody (for example, Ab26). The nucléotide sequence encoding the Vh amino acid sequence of Ab26 may be SEQ ID NO: 84. In some embodiments, the nucleic acid molécule encodes a Vh amino acid sequence comprising 1, 2, 3, 4, 5, 6, 7, 8, 9,10 or 11 mutations compared to the Vh amino acid sequence of a reference anti-CD52 antibody (for example, Ab26). The mutations may be in CDRs or in FRs.
[0087] In some embodiments, the nucleic acid molécule comprises a nucléotide sequence that encodes the heavy chain amino acid sequence of an anti-CD52 antibody, either with or without a signal sequence. For example, this nucléotide sequence may be SEQ ID NO: 5, with or without the signal sequence. In some embodiments, the nucleic acid molécule encodes a heavy chain amino acid sequence that is at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% identical to the heavy chain amino acid sequence of a reference anti-CD52 antibody (for example, Ab26). The nucléotide sequence encoding the heavy chain amino acid sequence of Ab26 may be SEQ ID NO: 5, with or without the signal sequence. In some embodiments, the nucleic acid molécule encodes a heavy chain amino acid sequence comprising 1,2,3,4, 5, 6, 7, 8,9,10 or 11 mutations compared to the heavy chain amino acid sequence of a reference anti-CD52 antibody (for example, Ab26). The mutations may be in CDRs, in FRs, or in constant domains.
[0088] Nucleic acids of the présent invention can be used to produce humanized antibodies having binding specificity for human CD52. For example, a nucleic acid (e.g., DNA (such as cDNA), or RNA) or one or more nucleic acids encoding a humanized antibody of the présent invention can be incorporated into a suitable construct (e.g., a recombinant vector) for further manipulation of sequences or for production of the encoded antibodies in suitable host cells.
[0089] Constructs or vectors (e.g., expression vectors) suitable for the expression of a humanized antibody having binding specificity for human CD52 are also provided. A variety of vectors are available, including vectors which are maintained in single copy or multiple copies in a host cell, or which become integrated into the host cell’s chromosome(s). The constructs or vectors can be introduced into a suitable host cell, and cells which express a humanized antibody of the présent invention, can be produced and maintained in culture. A single vector or multiple vectors can be used for the expression of a humanized antibody having binding specificity for human CD52.
[0090] Suitable expression vectors, for example mammalian cell expression vectors, can also contain a number of components, including, but not limited to one or more of the following: an origin of réplication; a selectable marker gene; one or more expression control éléments, such as a transcriptional control element (e.g., a promoter, an enhancer, a terminator), and/or one or more translation signais; a signal sequence or leader sequence for membrane targeting or sécrétion. In a construct or vector, a signal peptide sequence can be provided by the construct or vector or other source. For example, the transcriptional and/or translational signais of an antibody can be used to direct expression.
[0091] A promoter can be provided for expression in a suitable host cell. Promoters can be constitutive or inducible. For example, a promoter can be operably linked to a nucleic acid encoding a humanized antibody or antibody chain, such that it directs expression of the encoded polypeptide. A variety of suitable promoters for prokaryotic (e.g., lac, tac, T3, T7 promoters for E. coli) and eukaryotic (e.g., yeast alcohol dehydrogenase (ADH1), SV40, CMV) hosts are available. Those of skill in the art will be able to select the appropriate promoter for expressing an anti-CD52 antibody or portion thereof of the invention.
[0092] In addition, the vectors (e.g., expression vectors) typically comprise a selectable marker for sélection of host cells carrying the vector, and, in the case of a replicable vector, an origin of réplication. Genes encoding products which confer antibiotic or drug résistance are common selectable markers and may be used in prokaryotic (e.g., β-lactamase gene (ampicillin résistance), Tet gene (tétracycline résistance) and eukaryotic cells (e.g., neomycin (G418 or geneticin), gpt (mycophenolic acid), ampicillin, or hygromycin résistance genes). Dihydrofolate reductase marker genes permit sélection with methotrexate in a variety of hosts. Genes encoding the gene product of auxotrophic markers of the host (e.g., LEU2, URA3, HIS3) are often used as selectable markers in yeast. Use of viral (e.g., baculovirus) or phage vectors, and vectors which are capable of integrating into the genome of the host cell, such as retroviral vectors, are also contemplated.
[0093] The invention thus relates to isolated nucleic acid molécules that encode the humanized antibody, humanized light chain, humanized heavy chain of this invention. The invention also relates to isolated nucleic acid molécules that encode an antigenbinding portion of the antibodies and their chains. Polypeptide sequences encoded by the nucleic acids of this invention are described above and in the following Examples. [0094] In some embodiments, a nucleic acid or vector of this invention encodes a heavy chain (or an antigen-binding portion thereof) or a light chain (or an antigenbinding portion thereof) of this invention. In other embodiments, a nucleic acid or vector of this invention encodes both a heavy and a light chain (or antigen-binding portions thereof) of this invention. A host cell containing both the heavy chainencoding nucleic acid and the light chain-encoding nucleic acid, or one nucleic acid encoding both the heavy and light chains, can be used to make an antibody comprising the heavy and light chain (or an antigen-binding portion of the antibody). The heavy chain-encoding nucleic acid and the light chain-encoding nucleic acid can be placed on separate expression vectors. They can also be placed on a single expression vector under the same or different expression control. See, e.g., Cabilly U.S. Pat. 6,331,415; Fang U.S. Pat. 7,662,623.
Method of Producing Antibodies Having Specificity for Human CD52 [0095] Another aspect of the invention relates to a method of making an anti-human CD52 antibody of this invention. The antibody of this invention can be produced, for example, by the expression of one or more recombinant nucleic acids encoding the antibody in a suitable host cell. The host cell can be produced using any suitable method. For example, the expression constructs (e.g, the one or more vectors, e.g, a mammalian cell expression vector) described herein can be introduced into a suitable host cell, and the resulting cell can be maintained (e.g., in culture, in an animal, in a plant) under conditions suitable for expression of the construct(s) or vector(s).
Suitable host cells can be prokaryotic, including bacterial cells such as E. coli (e.g., strain DH5a™ (Invitrogen, Carlsbad, Calif.)), B. subtilis and/or other suitable bacteria; eukaryotic cells, such as fungal or yeast cells (e.g, Pichiapastoris, Aspergillus sp., Saccharomyces cerevisiae, Schizosaccharomyces pombe, Neurospora 5 crassa), or other lower eukaryotic cells, and cells of higher eukaryotes such as those from insects (e.g., Drosophila Schnieder S2 cells, Sf9 insect cells (WO 94/26087 (O’Connor), TN5B1-4 (HIGH 5) insect cells (Invitrogen), mammals (e.g., COS cells, such as COS-1 (ATCC Accession No. CRL-1650) and COS-7 (ATCC Accession No. CRL-1651), CHO (e.g., ATCC Accession No. CRL-9096), CHO DG44 (Urlaub, G.
and Chasin, L A., Proc. Natl. Acad. Sci. USA, 77(7):4216-4220 (1980)), 293 (ATCC Accession No. CRL-1573), HeLa (ATCC Accession No. CCL-2), CV1 (ATCC Accession No. CCL-70), WOP (Dailey, L., étal., J. Virol., 54:739-749 (1985)),3T3,293T(Pear, W. S„ étal., Proc. Natl. Acad. Sci. U.S.A., 90:83928396 (1993)), NS0 cells, SP2/0 cells, HuT 78 cells and the like)), or plants (e.g., tobacco, lemna (duckweed), and algae). (See, for example, Ausubel, F. M. et al., eds. Current Protocols in Molecular Biology, Greene Publishing Associâtes and John Wiley & Sons Inc. (1993)). In some embodiments, the host cell is not part of a multicellular organism (e.g., plant or animal), e.g., it is an isolated host cell or is part of a cell culture.
[0096] The présent invention also relates to cells comprising a nucleic acid, e.g., a vector, of the invention (e.g., an expression vector). For example, a nucleic acid (i.e., one or more nucleic acids) encoding the heavy and light chains of a humanized antibody, said antibody having binding specificity for human CD52, or a construct (i.e., one or more constructs, e.g., one or more vectors) comprising such nucleic acid(s), can be introduced into a suitable host cell by a method appropriate to the host cell selected (e.g, transformation, transfection, electroporation, infection), with the nucleic acid(s) being, or becoming, operably linked to one or more expression control éléments (e.g., in a vector, in a construct created by processes in the cell, integrated into the host cell genome). Host cells can be maintained under conditions suitable for expression (e.g., in the presence of inducer, suitable media supplemented with appropriate salts, growth factors, antibiotic, nutritional suppléments, etc.), whereby the encoded polypeptide(s) are produced. If desired, the encoded protein (e.g, humanized antibody, mouse antibody, chimeric antibody) can be isolated, for example, from the host cells, culture medium, or milk. This process encompasses expression in a host cell (e.g., a mammary gland cell) of a transgenic animal or plant (e.g., tobacco) (Seee.g.,WO 92/03918).
[0097] Fusion proteins can be produced in which an antibody portion (e.g., an antigen-binding fragment; antibody chain) is linked to a non-antibody moiety (i.e., a moiety which does not occur in antibodies as found in nature) in an N-terminai location, C-terminal location or internai to the fusion protein. For example, some embodiments can be produced by the insertion of a nucleic acid encoding an antibody sequence(s) into a suitable expression vector, such as a pET vector (e.g., pET-15b, Novagen), a phage vector (e.g., pCANTAB 5 E, Pharmacia), or other vector (e.g., pRIT2T Protein A fusion vector, Pharmacia). The resulting construct can be introduced into a suitable host cell for expression. Upon expression, some fusion proteins can be isolated or purified from a cell lysate by means of a suitable affinity matrix (See, e.g., Current Protocols in Molecular Biology (Ausubel, F. M. et al., Eds., Vol. 2, Suppl. 26, pp. 16.4.1-16.7.8 (1991)).
[0098] The invention relates to a host cell that comprises recombinant nucleic acid(s) encoding an antibody provided herein (e.g., an antibody, a light chain or a heavy chain, a light chain variable région or a heavy chain variable régions). The invention also relates to a host cell that comprises recombinant nucleic acid(s) encoding an antigen-binding portion of the antibody or their chains. In some embodiments, the host cell comprises a recombinant vector (e.g., expression vector, mammalian cell expression vector) of the invention as referred to herein.
[0099] The invention also relates to a method of preparing an antibody or an antibody polypeptide chain of this invention. In one embodiment, the method comprises maintaining a host cell of the invention as described herein (e.g., a host cell that contains one or more isolated nucleic acids that encode the antibody or polypeptide chain (e.g., a light chain and a heavy chain, a light chain only, or a heavy chain only, of the invention) under conditions appropriate for expression of the antibody or polypeptide chain. For example a host cell can be cultured on a substrate or in suspension. In some embodiments, the method further comprises the step of purifying or isolating the antibody or polypeptide chain.
[0100] Sélections can be performed using CD52 coupled to DYNABEADS M-270 amine (Dynal) according to the manufacturer’s recommendations. Alternatively, sélections using biotinylated CD52 can be prepared using the primary amine spécifie reagent succinimidyl-6-(biotinamido)hexanoate following the manufacturer’s instructions (EZ link NHS LC Biotin, Pierce).
[0101] Outputs from sélections can be tested as periplasmic préparations in high throughput screens based on compétition assays which rneasure the ability of the scFvs or IgGs to compete for binding to CD52.
[0102] Samples that are able to compete in the high throughput screens may be subjected to DNA sequencing as described in Vaughan et al. (1996) and Osbum et al. (1996). Clones would then be expressed and purified as scFvs or IgGs and assessed for their ability to bind CD52, neutralize CD52 or a combination thereof, e.g., using assays such as antibody-dependent cell mediated cytotoxicity (ADCC) assay and complément dépendent cytotoxicity (CDC) assay. Purified scFv préparations can then be prepared as described in Example 3 of WO 01/66754. Protein concentrations of purified scFv or IgG préparations may be determined using the BCA method (Pierce). Similar approaches can be used to screen for an optimal partner (the opposite chain) of a fixed antibody heavy or light chain (or Vh or Vl).
[0103] The antibodies of the invention can be in a purified or isolated form (e.g., having been separated away from molécules (e.g., peptides) of their source of origin (e.g., the supematant of cells; in a mixture such as in a mixture of antibodies in a library), and include antibodies obtained by methods described herein or other suitable methods. Isolated antibodies include substantially pure (essentially pure) antibodies, and antibodies produced by chemical synthesis, recombinant techniques and a combination thereof.
Antibodies Containing a Toxin Moiety or Toxin [0104] The invention also relates to antibodies that comprise a toxin moiety or toxin. Suitable toxin moieties comprise a toxin (e.g., surface active toxin, cytotoxin). The toxin moiety or toxin can be linked or conjugated to the antibody using any suitable method. For example, the toxin moiety or toxin can be covalently bonded to the antibody directly or through a suitable linker. Suitable linkers can include noncleavable or cleavable linkers, for example, pH cleavable linkers or linkers that comprise a cleavage site for a cellular enzyme. Such cleavable linkers can be used to préparé an antibody that can release a toxin moiety or toxin after the antibody is intemalized.
[0105] A variety of methods for linking or conjugating a toxin moiety or toxin to an antibody can be used. The particular method selected will dépend on the toxin moiety or toxin and antibody to be linked or conjugated. If desired, linkers that contain terminal functional groups can be used to link the antibody and toxin moiety or toxin.
Generally, conjugation is accomplished by reacting toxin moiety or toxin that contains a reactive functional group (or is modified to contain a reactive functional group) with a linker or directly with an antibody. Covalent bonds are formed by reacting a toxin moiety or toxin that contains (or is modified to contain) a chemical moiety or functional group that can, under appropriate conditions, react with a second chemical group thereby forming a covalent bond. If desired, a suitable reactive chemical group can be added to an antibody or to a linker using any suitable method. (See, e.g., Hermanson, G. T., Bioconjugate Techniques, Academie Press: San Diego, Calif. (1996).) Many suitable reactive chemical group combinations are known in the art, for example an amine group can react with an electrophilic group such as tosylate, mesylate, halo, N-hydroxysuccinimidyl ester (NHS), and the like. Thiols can react with maleimide, iodoacetyl, acrylolyl, pyridyl disulfides, 5-thiol-2-nitrobenzoic acid thiol (TNB-thiol), and the like. An aldéhyde functional group can be coupled to amine- or hydrazide-containing molécules, and an azide group can react with a trivalent phosphorous group to form phosphoramidate or phosphorimide linkages.
Suitable methods to introduce activating groups into molécules are known in the art (See for example, Hermanson, G. T., Bioconjugate Techniques, Academie Press: San Diego, Calif. (1996)).
[0106] Suitable toxin moieties and toxins include, for example, a maytansinoid, a taxane, a calicheamicin, a duocarmycin, or dérivatives thereof. The maytansinoid can 25 be, for example, maytansinol or a maytansinol analogue. Examples of maytansinol analogs include those having a modified aromatic ring and those having modifications at other positions. Maytansinol and maytansinol analogs are described, for example, in U.S. Pats. 5,208,020 and 6,333,410, the contents of which are incorporated herein by reference. Maytansinol can be coupled to antibodies and antibody fragments using, e.g., an N-succinimidyl 3-(2-pyridyldithio)proprionate (also known as Nsuccinimidyl 4-(2-pyridyldithio)pentanoate (or SPP)), 4-succinimidyl-oxycarbonyl-a(2-pyridyldithio)-toluene (SMPT), N-succinimidyl-3-(2-pyridyldithio)butyrate (SDPB), 2 iminothiolane, or S-acetylsuccinic anhydride. The taxane can be, for example, a taxol, taxotere, or novel taxane (See, e.g., WO 01/38318). The calicheamicin can be, for example, a bromo-complex calicheamicin, an iodo-complex calicheamicin, or analogs and mimics thereof. Bromo-complex calicheamicins include Il-BR, I2-BR, I3-BR, I4-BR, Jl-BR, J2-BR and Kl-BR. Iodo-complex calicheamicins include Il-I, I2-I, I3-I, Jl-I, J2-I, Ll-I and Kl-BR. Calicheamicin and mutants, analogs and mimics thereof are described, for example, in U.S. Pats. 4,970,198, 5,264,586, 5,550,246, 5,712,374, and 5,714,586, the contents of each of which are incorporated herein by reference. Duocarmycin analogs are described, for example, in U.S. Pats. 5,070,092, 5,187,186, 5,641,780, 5,641,780, 4,923,990, and
5,101,03 8, the contents of each of which are incorporated herein by reference.
[0107] Examples of other toxins include, but are not limited to antimetabolites, alkylating agents, anthracyclines, antibiotics, and anti-mitotic agents. The toxin can also be a surface active toxin, such as a toxin that is a free radical generator, or radionuclide containing moiety. The toxin can be a protein, polypeptide or peptide,
e.g., from bacterial sources or plant protein.
[0108] Antisense compounds of nucleic acids designed to bind, disable, promote dégradation or prevent the production of the mRNA responsible for generating a particular target protein can also be used as a toxin. Antisense compounds include antisense RNA or DNA, single or double stranded, oligonucleotides, or their analogs, which can hybridize specifically to individual mRNA species and prevent transcription and/or RNA processing of the mRNA species and/or translation of the encoded polypeptide and thereby effect a réduction in the amount of the respective encoded polypeptide. Ching, et al., Proc. Natl. Acad. Sci. U.S.A. 86:10006-10010 (1989); Broder, et al., Ann. Int. Med. 113: 604-618 (1990); Loreau, et al., FEBS
Letters 274: 53-56 (1990).
[0109] Toxins can also be photoactive agents. Suitable photoactive agents include porphyrin-based materials such as porfîmer sodium, the green porphyrins, chlorin E6, hematoporphyrin dérivative itself, phthalocyanines, etiopurpurins, texaphrin, and the like.
The toxin can be an antibody or antibody fragment that binds an intracellular target.
Such antibodies or antibody fragments can be directed to defined subcellular compartments or targets.
Therapeutic Methods and Compositions [0110] A pharmaceutical composition comprises a therapeutically-effective amount of one or more antibody and optionally a pharmaceutically acceptable carrier. Pharmaceutically acceptable carriers include, for example, water, saline, phosphate buffered saline, dextrose, glycerol, éthanol and the like, as well as combinations thereof. Pharmaceutically acceptable carriers can further comprise minor amounts of auxiliary substances, such as wetting or emulsifying agents, preservatives, or buffers that enhance the shelf-life or effectiveness of the fusion protein. The compositions can be formulated to provide quick, sustained, or delayed release of the active ingredient(s) after administration. Suitable pharmaceutical compositions and processes for preparing them are well known in the art. See, e.g., Remington (2005), The Science and Practice of Pharmacy, A. Gennaro, et al., eds., 21 st ed., Mack Publishing Co. The pharmaceutical composition further may comprise an immunosuppressive/ immunomodulatory and/or anti-inflammatory agent. A method of treating an immune disease in a patient in need of such treatment may comprise administering to the patient a therapeutically effective amount of the pharmaceutical composition. Antagonizing CD40-mediated T cell activation could inhibit undesired T cell responses occurring during autoimmunity, transplant rejection, or allergie responses, for example. Inhibiting CD40-mediated T cell activation could moderate the progression and/or severity of these diseases.
[0111] As used herein, a “patient” means an animal, e.g. mammal, including humans. The patient may be diagnosed with an immune disease or cancer. “Treatment” or “treat” or “treating” refers to the process involving alleviating the progression or severity of a symptom, disorder, condition, or disease. An “immune disease” refers to any disease associated with the development of an immune reaction in an individual, including a cellular and/or a humoral immune reaction. Examples of immune diseases include, but are not limited to, inflammation, allergy, autoimmune disease, or grafit-related disease. The autoimmune disease may be selected from the group consisting of systemic lupus erythematosus, multiple sclerosis, rheumatoid arthritis, diabètes, psoriasis, scleroderma, atherosclerosis, inflammatory bowel disease, and ulcerative colitis.
[0112] The antibodies of this invention are useful in immuno-suppression and immuno-ablation. The antibodies target CD52-expressing cells (e.g., T and B cells) and reduce (or “deplete” as used herein) their population in a subject in need thereof. Lymphocyte déplétion may be useful in treating a variety of diseases and conditions such as inflammation, autoimmune diseases, and cancer (e.g., lymphocyte (either B or T cell) malignancy). See, e.g., Reiff, A., Hematology, 10(2):79-93 (2005). Examples of diseases and conditions that can be treated with the antibodies or antigen-binding portions of this invention include, without limitation, multiple sclerosis, lupus, rheumatoid arthritis, graft versus host disease (GVHD), inflammatory bowl disease, vasculitis, Behcet’s disease, Wegener’s granulomatosis, Sjogren’s syndrome, uveitis, psoriasis, scleroderma, polymyositis, type I (autoimmune-based) diabètes, autoimmune cytopenias (e.g., autoimmune neutropenia, transfusion-dependent reffactory PRCA, leukemia and lymphoma such as non-Hodgkin’s lymphoma with bulky disease and B-cell chronic lymphocytic leukemia (CLL). The antibody also can be administered prophylactically to prevent onset of inflammation, or relapse of an autoimmune disease or cancer. For example, the antibody of this invention can be administered as part of a conditioning regimen to préparé a patient for a transplantation (e.g., a stem cell transplant, an infusion of autologous of allogeneic T cells, or a solid organ transplant). In some embodiments, the antibodies and antigenbinding portions of the invention are used to manufacture médicaments for the treatment of an immune disease or cancer.
[0113] Any suitable method or route can be used to administer the antibody polypeptide or the pharmaceutical composition. Routes of administration include, for example, parentéral (e.g, intravenous, intraarterial, intramuscular, intrathecal, intraperitoneal, subcutaneous injection), oral (e.g., dietary), locally, topical, inhalation (e.g., intrabronchial, intranasal or oral inhalation, intranasal drops), or rectal, depending on the disease or condition to be treated. A therapeutically effective dose of administered antibody polypeptide(s) dépends on numerous factors, including, for example, the type and severity of the immune disease being treated, the use of combination therapy, the route of administration of the antibody polypeptide(s) or pharmaceutical composition, and the weight of the patient. A non-limiting range for a therapeutically effective amount of an antibody is 0.1-20 mg/kg, and in an aspect, 110 mg/kg, relative to the body weight of the patient. The dose of antibody polypeptide(s) can be further guided by the amount of antibody polypeptide(s) required for CD52 antagonism in in vitro and/or in vivo models of disease states.
[0114] The antibody of this invention can be administered in a single unit dose or multiple doses at any time point deemed appropriate by a health care provider. The dosage can be determined by methods known in the art and can be dépendent, for example, upon the individual’s âge, sensitivity, tolérance and overall well-being. The 5 antibody or portion can be administered in an infusion over a period of several hours,
e.g., 3, 4, 5, or 6 hours. The antibody or portion can be administered in various regimens as appropriate, e.g.,, on two, three, four, five, or six consecutive days, in one or more cycles, separated by 3 or more months, e.g., 12 or 24 months. The total dose of the anti-CD52 antibody administered in any cycle may be 10-60 mg. In one embodiment, the antibodies or portions of the invention are administered to a patient using the same dosing regimens as Campath-IH®.
[0115] Antibodies of this invention can be administered to an individual (e.g., a human) alone or in conjunction with another agent (e.g., an immunosuppressant) in a combination therapy. The antibody can be administered before, along with or subséquent to administration of the additional agent. In some embodiments, the additional agent is, for example, an anti-inflammatory compound such as sulfasalazine, another non-steroidal anti-inflammatory compound, or a stéroïdal antiinflammatory compound. In some embodiments, the additional agent is another lympho-depleting antibody such as another anti-CD52 antibody, an anti-CD20 antibody, an anti-BAFF antibody, an anti-BAFF-R antibody, and the like. In some embodiments, the additional agent is, e.g., a cytokine (e.g., IL-7), anti-cytokine receptor antibody, or a soluble receptor, that skews, manipulâtes, and/or augmente the reconstitution process that occurs following lymphodepletion mediated by an antiCD52 antibody (See, e.g., Sportes et al., “Cytokine Thérapies: Ann. N.Y. Acad. Sci.
1182:28-38 (2009)). In another embodiment, a synthetic peptide mimetic can be administered in conjunction with an antibody of the présent invention.
[0116] Because antibodies of this invention target CD52-expressing cells, the antibodies also can be used to deplete CD52+ cell types other than T cells and B cells. For example, studies hâve shown that vascular leukocytes (VLC) and Tie2+ monocytes—myeloid cells expressing high levels of CD52—promote tumor angiogenesis and contribute to tumor résistance to anti-VEGF therapy. Pulaski et al.,
J. Translational Med. 7:49(2009). Anti-CD52 antibodies of this invention thus can be used to inhibit tumor angiogenesis by targeting VLC and Tie2+ monocytes. For this purpose, the anti-CD52 antibodies can be administered systemically, or locally at a site of neovascularization, such as a tumor site. Anti-CD52 antibody therapy can be used in conjunction with standard-of-care cancer treatment such as chemotherapy, surgery, or radiation, or with another targeted therapy such as anti-VEGF antibody therapy. Anti-CD52 antibody therapy can be used to treat, for example, breast cancer, lung cancer, glioma, colorectal cancer, and any other indications of anti-VEGF antibodies. Anti-CD52 antibody therapy also can be used in other neovascularization conditions including non-oncological neovascular conditions.
[0117] Studies hâve shown that lymphocyte déplétion by alemtuzumab is mediated by neutrophils and NK cells (Hu et al., Immunology 128:260-270 (2009). Thus, in an embodiment of combination therapy, an agent that stimulâtes neutrophils and NK cells can be administered to a patient, before, during or after anti-CD52 antibody therapy, to augment the antibody therapy. Stimulating neutrophils and/or NK cells include, without limitation, (1) increasing their rates of division, (2) increasing their cell surface expression of the Fc receptors corresponding to the isotype of the antiCD52 antibody (e.g., FcyRIIIa and FcyRIIIb, FcyRII, FcyRI, and FcaRI), (3) mobilizing and increasing the number of circulating cells, (4) recruiting the cells to target sites (e.g., sites of tumors, inflammation, or tissue damage), (5) and increasing their cytotoxic activity. Examples of agents that stimulate neutrophils and/or NK cells include, for example, granulocyte monocyte colony stimulating factor (GMCSF) (e.g., LEUKINE® or sargramostim and molgramostim); granulocyte colony stimulating factor (G-CSF) (e.g., NEUPOGEN® or filgrastim, pegylated filgrastim, and lenograstim); interferon gamma (e.g., ACTIMMUNE®); CXC chemokine receptor 4 (CXCR4) antagonists (e.g., MOZOBIL™ or plerixafor); and CXC chemokine receptor 2 (CXCR2) agonists. The neutrophil count of the patient may be monitored periodically to ensure optimal treatment efficacy. The neutrophil count of the patient also can be measured prior to the start of the anti-CD52 antibody treatment. The stimulator’s amount can be adjusted based on the patient’s neutrophil count. A higher dose of the stimulator may be used if the patient has a lower than normal neutrophil count. During periods of neutropenia, which may be caused by treatment with the anti-CD52 antibody, a higher dose of the neutrophil stimulator may also be administered to maximize the effect of the anti-CD52 antibody.
[0118] Because neutrophil and/or NK stimulation improves the efficacy of antiCD52 antibody therapy, this embodiment of combination therapy allows one to use less antibody in a patient while maintaining similar treatment efficacy. Using less anti-CD52 antibody while maintaining treatment efficacy may help reduce side effects of the anti-CD52 antibody, which include immune response in the patient against the administered antibody as well as development of secondary autoimmunity (autoimmunity that arises during or after anti-CD52 antibody treatment). This embodiment of combination of therapy is also useful in an oncology setting, e.g., when the patient has neutropenia.
[0119] In another embodiment of combination therapy, one can use a stimulator of regulatory T cells to augment anti-CD52 antibody therapy. It has been shown that anti-CD52 antibodies deplete CD4+CD25+FoxP3+ regulatory T cells to a much lesser extent as compared to other CD4+ T cells. Regulatory T cells (also known as “Treg” or suppressor T cells) are cells that are capable of inhibiting the prolifération and/or function of other lymphoid cells via contact-dependent or contact-independent (e.g., cytokine production) mechanisms. Several types of regulatory T cells hâve been described, including γδ T cells, natural killer T (NKT) cells, CD8+ T cells, CD4+T cells, and double négative CD4 CD8 T cells. See, e.g., Bach et al., Immunol. 3:18998 (2003). CD4+CD25+FoxP3+ regulatory T cells hâve been referred as “naturally occurring” regulatory T cells; they express CD4, CD25 and forkhead family transcription factor FoxP3 (forkhead box p3). Thus, in this embodiment of combination therapy, one can administer an agent that stimulâtes CD4+CD25+FoxP3+ regulatory T cells before, during or after the anti-CD52 antibody therapy, to skew the composition of the immune System following lympho-depletion. The agent may, for example, activate those T cells, stabilize and/or expand the population of the cells, mobilize and increase circulation of the cells, and/or recruit the cells to target sites. Examples of such agents are rapamycin, active or latent TGF-β (e.g., TGF-βΙ, TGFβ2, TGF^3, TGF-βΤ, and TGF-βδ), IL-10, IL-4, IFN-α, vitamin D (e.g, vitamin D3), dexamethasone, and mycophenolate mofetil (See, e.g., Barrat et al., J. Exp. Med. 195:603-616 (2002); Gregori et al., J Immunol. 167: 1945-1953 (2001); Battaglia et al., Blood 105: 4743-4748 (2005); Battaglia et al., J. Immunol. 177:8338-8347 (2006)).
[0120] In this invention, an effective amount of anti-CD52 antibody for treating a disease is an amount that helps the treated subject to reach one or more desired clinical end points. For example, for lupus (whose manifestations include systemic lupus erythematosus, lupus nephritis, cutaneous lupus erythematosus, CNS lupus, cardiovascular manifestations, pulmonary manifestations, hepatic manifestations, haematological manifestations, gastrointestinal manifestations, musculoskeletal manifestations, néonatal lupus erythematosus, childhood systemic lupus erythematosus, drug-induced lupus erythematosus, anti-phospholipid syndrome, and complément deficiency syndromes resulting in lupus manifestations; See, e.g., Robert G. Lahita, Editor, Systemic Lupus Erythematosus, 4th Ed., Elsevier Academie Press, 2004), clinical endpoints can be measured by monitoring of an affected organ System (e.g., hematuria and/or proteinuria for lupus nephritis) and/or using a disease activity index that provides a composite score of disease severity across several organ Systems (e.g., BILAG, SLAM, SLEDAI, ECLAM). See, e.g., Mandl et al., “Monitoring patients with systemic lupus erythematosus” in Systemic Lupus Erythematosus, 4th édition, pp. 619-631, R. G. Lahita, Editor, Elsevier Academie Press, (2004).
[0121] The antibodies or portions thereof of the invention can be used to treat an individual who has previously been treated with Campath-1H® who has developed neutralizing antibodies to Campath-1H® (e.g., a Campath-lH®-refractory individual). For example, one could treat an individual having an autoimmune disease (e.g., multiple sclerosis, lupus, vasculitis) and/or a cancer (e.g., a leukemia (e.g., chronic lymphocytic leukemia), a lymphoma (e.g., non-Hodgkin’s lymphoma)) who has previously been treated with Campath-1H® (e.g., with one or more courses of Campath-1H® treatment) and who has developed neutralizing antibodies to Campath-1H® that reduce the efficacy of further Campath-1H® treatment. In another embodiment, one could treat an individual who had become refractory to treatment with a particular humanized antibody described herein with one of the other humanized antibodies described herein.
[0122] By way of example, the antibodies or portions of this invention are useful therapeutic agents for treating multiple sclerosis (MS). MS includes relapsingremitting, secondary progressive, primary progressive, and progressive relapsing multiple sclerosis ((Lublin et al., Neurology 46 (4), 907-11 (1996)), diagnosed is made by, for example, the history of symptoms and neurological examination with the help of tests such as magnetic résonance imaging (MRI), spinal taps, evoked potential tests, and laboratory analysis of blood samples. In MS, the goals of treatment are to reduce the risk, frequency, and/or severity of relapses, prevent or reduce disability arising from disease progression, and promote tissue repair. Thus, an amount of anti5 CD52 antibody that helps achieve a clinical endpoint consistent with one or more of these goals is an effective amount of antibody for the treatment. For example, an antiCD52 antibody or portion of this invention can be indicated for treating relapsing forms of MS to slow or reverse the accumulation of physical disability and reduce the frequency of clinical exacerbations. The antibody or portion may be tested in clinical 10 trials for its efficacy in reducing the risk of relapse and the risk for progression of clinically significant disability. The antibody or portion can be administered to patients having an active relapse or at risk of developing a relapse, or to a patient experiencing progressive détérioration. See e.g., U.S. Pat. Publication 2008/0267954, the disclosure of which is herein incorporated by reference in its entirety.
[0123] The methods and compositions of this invention are useful in treating MS patients who hâve had a suboptimal response to prior MS-modifying therapy. The MS patient may be a relapsing-remitting (RRMS) patient who has previously received an MS-modifying therapy, for example, interferon beta-la (e.g., AVONEX® and REBIF®), interferon beta-lb (e.g., BETASERON® and EXTAVIA®), glatiramer acetate (e.g., COP AXONE®), mitoxantrone (e.g., NOVANTRONE®), natalizumab (e.g., TYSABRI®), fmgolimod (e.g., GILENYA®), and teriflunomide (e.g., AUBAGIO™). In one embodiment, the previous MS-modifying therapy is not alemtuzumab (e.g., CAMPATH, MABCAMPATH, or LEMTRADA™) or another anti-CD52 antibody. The previously treated patient may hâve had an MS relapse or 25 renewed MS activity while being treated or shortly after being treated (e.g., within one year). Renewed MS activity may include new or worsening neurological symptoms attributable to MS, an increase in the patient’s EDSS score (Kurtzke, Neurology 1983;33:1444-52), a decrease in the patient’s Multiple Sclerosis Functional Composite (MSFC) score (Cutter et al., Brain I999;122(Pt 5):871-82), new or enlarged cranial or spinal lésions, brain volume loss, and/or neurodegeneration determined by optical cohérence tomography (OCT). For example, the patient may hâve had at least one previous relapse while being treated with interferon beta or glatiramer. The patient may also hâve at least one of the following characteristics:
onset of symptoms 10 or fewer years before initiation of first cycle of anti-CD52 antibody treatment; at least two attacks in the two years before initiation of first cycle of anti-CD52 antibody treatment; at least one relapse while on interferon beta or glatiramer after at least six months of treatment; Expanded Disability Status Scale (EDSS) score of 5.0 or lower; and cranial and spinal magnetic résonance imaging (MRI) abnormalities.
[0124] In one embodiment, an antibody or portion of the invention is administered to an MS patient having an autoimmune disease (e.g., multiple sclerosis (MS)) in a regimen comprising administration of a first cycle of the antibody followed by at least one further cycle of the antibody, in which each treatment cycle comprises 1-5 doses that are applied on consecutive days, and wherein each treatment cycle is separated from the next cycle by at least 1-24 months (e.g., 12 months). For example, in one embodiment, a patient having multiple sclerosis is treated with a first cycle of the antibody comprising 5 daily doses of the antibody followed by at least one further cycle of antibody treatment, in which the treatment occurs one year after the first cycle and comprises 3 doses of the antibody applied on consecutive days. In one embodiment, an anti-CD52 antibody is administered to a patient having multiple sclerosis on five consecutive days at 12 mg/day in a first treatment cycle; and after one year, the anti-CD52 antibody is administered to the patient on three consecutive days at 12 mg/day in a second treatment cycle. In one embodiment, an anti-CD52 antibody is administered to a patient having multiple sclerosis at a total dose of 60mg over five consecutive days in a first treatment cycle; and after one year, the anti-CD52 antibody is administered to the patient at a total dose of 36 mg over three consecutive days in a second treatment cycle.
[0125] In the methods and compositions of this invention, a “year” does not hâve to equal exactly 365 days or 12 months. For example, the second cycle of an anti-CD52 antibody does not hâve to be administered exactly 365 days or 12 months after the first cycle of an anti-CD52 antibody is administered. The second cycle may be initiated 365 days plus or minus up to 6 months, plus or minus up to 5 months, plus or minus up to 4 months, plus or minus up to 3 months, plus or minus up to 2 months, plus or minus up to one month, plus or minus up to 4 weeks, plus or minus up to 3 weeks, plus or minus up to 2 weeks, or plus or minus up to one week after the initiation of the first cycle.
[0126] Τη another embodiment, a patient having MS is only re-treated once evidence of renewed MS activity has been observed (See, e.g., WO 2008/031626; the disclosure of which are incorporated herein by reference in their entirety). In some embodiments, it may be necessary to administer more frequent courses of treatment (e.g., every four months, every six months) if patients with more advanced forms of MS or more progressive forms of other autoimmune diseases (such as vasculitis; See, e.g, Walsh et al., Axai Rheum Dis 67:1322-1327 (2008)) expérience a relapse early on after their last course of treatment or show renewed MS activity. Evidence of renewed MS activity may be determined based on the professional judgment of the treating clinician, using any means that may be available to such clinician. A variety of techniques are currently available to clinicians to diagnose renewed MS activity including, without limitation, by clinical means (relapse or progression of neurological disability) or by magnetic résonance imaging (MRI) of the brain or spinal cord. As is well understood by medical practitioners, disease activity detected via MRI may be indicated by the occurrence of new cérébral or spinal lésions on Tl (enhanced or non-enhanced)- or T2-weighted images or by the increase of the volume of such lésions.
[0127] As diagnostic methods for MS are continually evolving, it is anticipated there may be additional methods in the future that will detect renewed MS activity (e.g, magnetization transfer ratio or MR-spectroscopy). The particular diagnostic method used to detect renewed MS activity is not a limitation of the claimed invention. In certain embodiments, repeated MRIs are performed in fixed intervals after a treatment cycle in order to détermine whether re-treatment of any given patient is necessary and the optimal time point for re-treatment of such patient. In general, it is désirable for re-treatment to occur before the disease re-manifests clinically.
[0128] The methods and compositions of the invention may be used in combination with other MS-modifying thérapies. Non-limiting examples of MS-modifying thérapies include interferon beta-la (e.g, AVONEX® and REBIF®), interferon betalb (e.g., BETASERON® and EXTAVIA®), glatiramer acetate (e.g, COP AXONE®), mitoxantrone (e.g., NOVANTRONE®), natalizumab (e.g, TYSABRI®), fïngolimod (e.g., GILENYA®), and teriflunomide (e.g., AUBAGIO®).
[0129] In some embodiments, the methods and compositions of the invention may be used in combination with generalized or non-specific treatments or thérapies, for example steroids (e.g., corticosteroids) or dalfampridine (e.g., AMPYRA®).
[0130] In one aspect, drugs known to those skilled in the art to be effective to manage infusion-related side effects may be administered before, during, or after infusion of the anti-CD52 antibody. Such drugs include corticosteroids (e.g., méthylprednisolone), acetaminophen, and antihistamines (e.g., diphenhydramine). In some embodiments, patients receive 1 g/day of intravenous méthylprednisolone on one, two, three, four, or five consecutive days during a cycle of treatment with an antibody of the invention.
[0131] In one embodiment of the invention, patients may additionally receive a drug that serves as a prophylaxis against herpes. For example, patients may receive 200 mg of acyclovir (e.g., ZOVIRAX®) twice daily during administration of an antibody of the invention and for 28 days thereafter.
[0132] Formulation will vary according to the route of administration selected (e.g., solution, émulsion). An appropriate composition comprising the antibody or antigenbinding fragment to be administered can be prepared in a physiologically acceptable vehicle or carrier. The composition can comprise multiple doses or be a single unit dose composition. For solutions or émulsions, suitable carriers include, for example, aqueous or alcoholic/aqueous solutions, émulsions or suspensions, including saline and buffered media. Parentéral vehicles can include sodium chloride solution, Ringer’s dextrose, dextrose and sodium chloride, lactated Ringer’s or fixed oils. Intravenous vehicles can include various additives, preservatives, or fluid, nutrient or electrolyte replenishers (See, generally, Remington’s Pharmaceutical Sciences, 17th Edition, Mack Publishing Co., PA, 1985). For inhalation, the compound can be solubilized and loaded into a suitable dispenser for administration (e.g., an atomizer, nebulizer or pressurized aérosol dispenser).
Diagnostic Methods and Compositions [0133] The antibodies of the présent invention also are useful in a variety of processes with applications in research and diagnosis. For instance, they can be used to detect, isolate, and/or purify human CD52 or variants thereof (e.g., by affinity purification or other suitable methods such as flow cytometry, e.g, for cells, such as lymphocytes, in suspension), and to study human CD52 structure (e.g., conformation) and function. The antibodies of this invention will be useful for in vitro applications. [0134] The antibodies of the présent invention can be used in diagnostic applications (e.g, in vitro, ex vivo). For example, the humanized antibodies of the présent invention can be used to detect and/or measure the level of human CD52 in a sample (e.g., on cells expressing human CD52 in tissues or body fluids, such as an inflammatory exudate, blood, sérum, bowel fluid, tissues bearing human CD52). A sample (e.g, tissue and/or body fluid) can be obtained from an individual and an antibody described herein can be used in a suitable immunological method to detect and/or measure human CD52 expression, including methods such as flow cytometry (e.g, for cells in suspension such as lymphocytes), enzyme-linked immunosorbent assays (ELISA), including chemiluminescence assays, radioimmunoassay, and immunohistology. The invention encompasses kits (e.g., diagnostic kits) comprising the anti-CD52 antibodies described herein.
[0135] In one embodiment, a method of detecting human CD52 in a sample is provided, comprising contacting a sample with an antibody of the présent invention under conditions suitable for spécifie binding of the antibody to human CD52 and detecting antibody-CD52 complexes which are formed. In an application of the method, the antibodies described herein can be used to analyze normal versus inflamed tissues (e.g, from a human) for human CD52 reactivity and/or expression (e.g, immunohistologically) to detect associations between e.g., inflammatory bowel disease (IBD), autoimmune diseases (such as multiple sclerosis and lupus), cancer (such as non-Hodgkin’s lymphoma and chronic lymphocytic leukemia), or other conditions and increased expression of human CD52 (e.g., in affected tissues). Thus, the antibodies of the présent invention permit immunological methods of assessment of the presence of human CD52 in normal and inflamed tissues, through which the presence of disease, disease progress and/or the efficacy of anti-human CD52 therapy in the treatment of disease, e.g., inflammatory disease can be assessed.
[0136] In addition, the antibodies can be used to examine tissues after treatment with a depleting anti-CD52 therapeutic antibody to gauge how effective the déplétion has been as well as to détermine whether there has been any downregulation in the expression of CD52 (Rawstrom et al., Br. J. Heam., 107:148-153 (1999)).
[0137] Unless otherwise defined, ail technical and scientific terms used herein hâve the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Exemplary methods and materials are described below, although methods and materials similar or équivalent to those described herein can also be used in the practice or testing of the présent invention. Ail publications and other référencés mentioned herein are incorporated by reference in their entirety. In case of conflict, the présent spécification, including définitions, will control. Although a number of documents are cited herein, this citation does not constitute an admission that any of these documents forms part of the common general knowledge in the art. Throughout this spécification and embodiments, the word “comprise,” or variations such as “comprises” or “comprising” will be understood to imply the inclusion of a stated integer or group of integers but not the exclusion of any other integer or group of integers. The materials, methods, and examples are illustrative only and not intended to be limiting.
The following examples are meant to illustrate the methods and materials of the présent invention. Suitable modifications and adaptations of the described conditions and parameters normally encountered in the art which are obvious to those skilled in the art are within the spirit and scope of the présent invention. The terms “antibody” and “immunoglobulin” are used interchangeably herein. The terms “antigen-binding fragment” and “antigen-binding portion” also are used interchangeably herein.
EXAMPLES [0138] The following examples are meant to illustrate the methods and materials of the présent invention. Suitable modifications and adaptations of the described conditions and parameters normally encountered in the art that are obvious to those skilled in the art are within the spirit and scope of the présent invention.
Example 1: Expression and Characterization of Antibody Abl [0139] Antibody Abl was derived from Ab26 by changing residue 33 (within LCDR1) in Ab26’s light chain to Asp. Additionally, a variant antibody was generated wherein the first 33 amino acid residues of the light chain of Ab26 were deleted (the
Del33 antibody). The variant light chain DNA was synthesized in pDONR221 Entry vectors by DNA2.0 in the light-chain backbone and subcloned into HEK293 expression vector pCEP4(-E+I)Dest by Gateway cloning. A large-scale DNA prep was then performed for ΗΕΚ293-ΕΒΝΑ cell transfection. Ail variants and the parent Ab26 control light chain were co-transfected with the parent Ab26 heavy chain at 1:1 ratio.
[0140] For purification, 160-300 ml of transfected media were used to purify Ab26, Del33, and Abl antibodies using 1 ml HiTrap Protein A columns (GE) and a multichannel pump set up. A280 in collected fractions was measured by NanoDrop. Fractions #1 and #2, containing the majority of the protein, were combined, bufferexchanged into 50 mM sodium phosphate, 150 mM sodium chloride, pH 6.0, and concentrated using Amicon-4 10 kD cutout columns. The protein purification yield is summarized in Table 3.
Table 3 Protein purification yields
Antibody CM volume (ml) Protein concentration (mg/ml) Volume of purified material (pl) Total protein (PS)
Ab26 300 2.86 370 1058
Del33 160 0.04 124 4
Abl 300 1.71 900 1539
[0141] The Del33 mutant was not expressed or purified at high levels, likely due to a misfolding problem linked to the délétion. Abl and Ab26 were successfully purified to homogeneity for further characterization. N-terminal sequencing of the first 15 amino acids confirmed that ail three samples had the expected sequence. [0142] Ab26 and Abl were also expressed in CHO cells and purified on protein A columns. The antibodies were characterized by BIACORE™ for their affinity for CD52 peptide. Results are shown in Figure 17 and Table 4 for antibodies produced in HEK293 cells and in Figure 18 and Table 5 for antibodies produced in CHO cells. Table 4 Binding affinity results for antibodies expressed in HEK293 cells
Antibody fc. (xlO6 M'1 s4) Ms'1) Ko (nM)
Ab26 (préparation 1) 7.2 0.01 1.7
Ab26 (préparation 2) 5.4 0.01 2.2
Abl 0.4 0.58 1480
Table 5 Binding affinity results for antibodies expressed in CHO cells
Antibody Ms’1) K»(nM)
Ab26 6.2 1.6 2.6
Abl 0.3 38.3 1250
[0143] CD52 BIACORE™ binding assays were performed as follows: A low level of a CD52 peptide mimotope (CGQNDTSQTSSPSAD (SEQ ID NO: 87)) was immobilized on a CM5 chip via thiol chemistry using an N-terminal Cys. Several concentrations of anti-CD52 antibody made in HBS-EP running buffer (1 to 20 nM) were injected over the surface to monitor the binding. Kinetic analysis was performed using Scrubber2 software.
[0144] Antibody Abl demonstrated more than 400-fold réduction in affinity compared to Ab26. No clear binding signal was observed by the Abl antibody at 110 nM concentrations, where Ab26 displays high binding affinity (Figure 17). Higher concentrations of Abl (up to 1900 nM) were used in an effort to get a quantitative measure for the loss of the binding affinity by the variant. The 1250nM Kd obtained from CHO-produced Abl was consistent with that of the HEK293-produced Abl (1480nM). The decrease in affinity is reflected in both reduced on-rate and increased off-rate in the kinetic binding.
[0145] A CDC potency assay was performed to assess whether the affinity loss would affect effector function by measuring cell-killing via complément dépendent cytotoxicity. Ail variant and control antibody materials were serially diluted 1:2 across one solid black 96-well plate from 2 mg/mL to 0.002 mg/mL in assay medium (phenol-red free IMDM medium + 0.1% BSA). Materials with a stock concentration < 2 mg/mL were tested neat. Normal human sérum complément (Quidel Corporation) was added to ail wells at a final concentration of 5% (v/v). Pfeiffer b-lymphocytes (ATCC) were then added at a final concentration of 0.6 x 106 cells/mL. A négative cell lysis control (assay medium + cells), a positive cell lysis control (assay medium + cells + 2% (w/v) Triton X-100), and a positive dose response control (4 mg/ml. control material) were included on the same plate. The reactions were incubated for one hour in a humidified, 37°C, 5% CÛ2 incubator. Fifty microliters of pre-warmed alamarBlue® détection reagent (Life Technologies) were then added to ail wells followed by incubation in reduced light for four hours. The relative réduction of alamarBlue® was measured using a fluorescent plate reader (ex: 530 nm, em: 590, cutoff: 570 nm). Sofitmax Pro, v. 5.3 (Molecular Devices) was used to generate doseresponse curves fit to a four parameter model. The resuit is shown in Figure 19. Ab26 (Control) demonstrated concentration dépendent cell killing as expected. Antibody Abl produced in CHO cells demonstrated little détectable CDC activity in the concentration range tested. These experiments suggest that a single amino acid substitution may hâve a significant impact on Ab26 biological function.
Example 2: Analysis of CD52 binding affînity of Anti-CD52 Antibodies [0146] Antibodies Ab4, Ab3, Ab24, AblO, Abl2, and Ab25 (see Tables 1 and 2) were expressed in HEK293 cells. The light chain DNA was synthesized, subcloned, and transiently expressed in HEK293 cells as follows. The DNA molécules were synthesized in pDONR221 Entry vectors by DNA2.0 in the light-chain backbone and subcloned into HEK293 expression vector pCEP4(-E+I)Dest by Gateway cloning. The light chain-expressing vector was co-transfected with an Ab26 heavy chainexpressing vector into HEK293 cells. Ab26 DNA was used as a control for transfection. The conditioned media were screened for protein expression level by Octet using a protein A sensor and for CD52-binding affînity by BIACORE™ using a CD52 peptide chip. The results are shown in Figure 1.
[0147] Ab24 and AblO antibodies demonstrated strong CD52 binding affmity. Ab4 and Ab3 demonstrated lower CD52 binding affînity. To confirm this fînding, Ab4 and Ab3 were purified using a protein A column for further characterization. An SDSPAGE gel of Ab26 antibody (CTL), Ab26 antibody from two transfections (CTL1 and CTL2), Abl, Ab4, Ab3, AblO, Ab24, Abl2, and Ab25 and the BIACORE™ CD52 peptide binding results are shown in Figure 2.
[0148] Results with the purified antibodies confirmed the initial media screening data. Ab4 and Ab3 demonstrated lower CD52 binding affînity.
Example 3: Large-Scale Préparation and Characterization of Ab24 and AblO Antibodies [0149] Ab24 and AblO antibodies were produced in larger scale in CHO Kl cells to détermine their CD52 binding and inhibitory properties. Light chain clipping was observed in the two antibodies; and a band below 150kD was observed in the nonreducing (NR) gel (designated here as the “100kD species”) (Figure 3).
[0150] The light chain clipping issue was minimized by optimizing the tissue culture conditions and by omitting the media storage step at 4°C. There seemed to be a small amount of lOOkD species (below 150KD) produced despite these improvements (Figure 3). The two antibodies were further characterized. There were
9-12% and 18-20% of 100kD species found in two larger scale preps of Ab24 and
AblO, respectively, by SEC-HPLC. An intact mass spectrometry experiment confirmed the sequences of the antibodies. N-terminal sequencing of the low molecular weight species suggested only the N-terminal sequence of the heavy chain was présent. When the lOOkD species was collected and analyzed on an SDS-PAGE gel, only the heavy chain was observed. These results suggest that the 1 OOkD species contained only heavy chain (Figure 4).
Example 4: Préparation and Screening of Additional Anti-CD52 Antibodies [0151] The expression vectors for antibodies Ab2, Ab6, Ab7, Ab5, Abl3, Abl5, Abl7, Abl8, Abl9, Ab23, Ab22, Abl 1, Ab20, Abl6, Ab21, and Abl4 (see Tables 1 and 2) were transfected into HEK293 cells. Ail antibodies were expressed at > 0.2 pg/ml when the conditioned media was analyzed with a protein A sensor on Octet (Figure 5, upper panel). BIACORE™ CD52 affinity screening of these media samples was then used to identify lead candidates (Figure 5, middle and lower panels).
[0152] Antibodies Ab2, Ab6, Ab7, and Ab5 had low binding affinity for CD52. Several other antibodies demonstrated higher binding affinity for CD52. These antibodies included Ab22, Ab20, Ab21, Ab 14, Ab 14, and Abl 1. Antibodies Ab22, Ab20, Ab21, Ab 14, Ab 14, and Abl 1 were studied further.
[0153] These six antibodies (Ab22, Ab20, Ab21, Abl4, Abl4, and Abl 1) were scaled-up to one TripleFlask/antibody transient expression. (This flask has three parallel growth surfaces to provide a total culture area of 500 cm2.) The antibodies were purified from 160 ml of conditioned media using 1 ml HiTrap protein A affinity columns (GE Healthcare). The reducing SDS-PAGE gel showed successful purification and reasonable antibody purity (Figure 6). For CD52 binding comparison on BIACORE™, the purified samples were diluted to 60 and 7.5nM in HBS-EP and injected over a CD52 peptide #741 chip (the results are shown in Figure 6 for 7.5nM). The BIACORE™ binding analysis confirmed the initial media screening resuit that these antibodies hâve tight binding to CD52 peptide. A kinetics binding experiment indicated the following affinity rank:
(Abl6, Ab21) > Ab26 > (Ab20, Abl 1, Abl4, Ab22) > (Ab24, AblO)
Ab 16 and Ab21 were shown to hâve affinities higher than Ab26.
Example 5: Analysis of Stability of Anti-CD52 Antibodies [0154] To détermine whether stability of the anti-CD52 antibody variants had been affected, high température conditions were used to compare and to screen the anti17634
CD52 antibody variants. Ab26 and select variants purified from HEK293 cells were used for the initial screening. The proteins (85 pg) were diluted in PBS, pH 7.2, to ~ 0.4 mg/ml, and incubated at 45 °C for 4 weeks. Their binding affinity to CD52 peptide was measured on BLACORE™. One microgram of each variant taken at Week #2 and Week #4 was serially diluted in HBS-EP to 7.5, 2.5, and 0.8nM, and injected over a CD52 peptide #741 chip. The preliminary binding constants were calculated using Scrubber software and are shown in Figure 20 (Ab26 is labeled as “CTL”).
[0155] The results indicate that Ab21, Ab 16 and Ab20 antibodies retain significant CD52 binding affinity over 4 weeks of incubation, suggesting that they are more stable than antibody Ab26. In contrast, the Ab 10 and Ab22 antibodies lost most of their binding affinity to antigen over the incubation timeffame.
[0156] To confirm the resuit obtained in the incubation experiment, a new préparation of the variants was generated and incubated in “3 component” buffer (10 mM succinate, 10 mM histidine, 10 mM sodium phosphate, pH 7.5) along with Ab26 antibody at 37°C or 45 °C for 4 weeks. The “3 component” buffer is typically utilized in antibody manufacturability tests. The amount of incubated material is listed in Table 6. The Ab21, Abl6 and Ab20 antibodies were also incubated at 45°C in the same buffer. Aliquots were taken at Week 2 and Week 4 (T2 and T4) to assess their affinity to CD52 peptide by BIACORE™. Each sample was diluted to 7.5, 3.75, and 1.875 nM in HBS-EP and injected over a CD52 peptide #741 chip for 3 min, followed by 3 min dissociation in buffer. The apparent Kd’s are shown in Figure 21.
Table 6 Amount of Incubated Material in Three Component Buffer Experiment
Mutant Concentration (mg/ml) 37°C incubation 0*g) 45°C incubation <WÔ
Ab20 0.363 75 75
Ab22 0.350 75 -
Abl6 0.366 75 75
Ab21 0.391 75 75
Abl4 0.359 75 -
Ab24 0.361 75 -
AblO 0.382 75 -
Abll 0.401 75 -
CTL1 0.354 75 -
CTL2 0.375 75 75
. r [0157] Results suggested that the binding affinity of the Ab21, Ab 16 and Ab20 antibodies remained the same or only slightly decreased at 37°C and 45°C after 4 weeks of incubation, whereas Ab26 (CTL, CTL1, and CTL2) lost binding affinity over time. The Kd of Ab26 (CTL) changed from 4.3 nM to 1230 nM after incubation at 45 °C after 4 weeks, indicating a decrease in binding to CD52. This suggests that these mutants are indeed more résistant to instability over time at the L-CDR1 site. [0158] To verify the structural integrity of the Ab21, Abl6 and Ab20 antibodies, aggregation and fragmentation of the variants that were diluted in PBS, pH 7.2, to ~ 0.4 mg/ml and incubated at 45°C for 4 weeks was assessed by SEC-HPLC. Five micrograms of protein were diluted in the mobile phase (40mM sodium phosphate, 500mM sodium chloride, pH 6.0) to 100 μΐ total volume and injected onto TSK Gel G3000 SWxl column at 0.5 ml/min for 35 min. No significant aggregation and limited fragmentation were detected in Ab21, Ab 16, Ab20, and Ab26 (CTL) (Figure 22). Therefore, the loss of affinity in Ab26 is likely not to be caused by loss of structural integrity.
Example 6: Biological Activity of Anti-CD52 Antibodies in In Vitro Potency Assay (CDC Potency) [0159] Three anti-CD52 antibodies (Ab21, Ab20 and Ab 16) were evaluated in a CDC assay. This assay was used to measure the ability of the antibodies to lyse Pfeiffer B-lymphocytes in the presence of complément. Antibodies were assayed in singlicate on the same plate and qualitatively compared to Ab26 (Control) (See, Figure 7).
[0160] The results suggested that the potency of Ab21 and Ab 16 was comparable to or improved over Ab26. Ab20 had slightly lower potency in this test.
Example 7: Biological Activity of Anti-CD52 Antibodies in HuCD52-Transgenic Mice [0161] Three anti-CD52 antibodies (Ab21, Ab20 and Ab 16) were also evaluated in vivo in huCD52 transgenic mice. HuCD52 transgenic mice were injected with Ab26,
Ab21, Ab20 or Abl6 intravenously at 1 mg/kg (5 animals/group). On day 3 postinjection, blood and spleens were analyzed for lymphocyte déplétion by flow cytometry. The extent of lymphocyte déplétion in blood and spleen by flow cytometry analysis is shown in Figure 8 (Ab26 is labeled as “CTL”).
[0162] The results suggested that the lymphocyte déplétion induced by antibodies Ab21, Ab20 and Ab 16 in blood and spleens appeared to be similar to or improved over antibody Ab26. Taken together, these data confirm that these anti-CD52 antibodies are biologically active in vivo.
[0163] Table 7 lists the SEQ ID NOs used herein.
Table 7 SEQ ID NOs
SEQIDNO TYPE DESCRIPTION
1 Full-length protein Wild-type CD52 protein
2 LC KGN
3 HC Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, Ab25, and KGN
4 LC Ab26
5 HC (nucleic acid) Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, Ab25, and KGN
6 LC (nucleic acid) Ab26
7 H-CDR1 Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, and Ab25
8 H-CDR2 Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, and Ab25
9 H-CDR3 Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl 3, Abl4, Abl 5, Abl 6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24,andAb25
10 L-CDR1 Ab26
11 L-CDR1 Abl
12 L-CDR1 Ab2
13 L-CDR1 Ab3
14 L-CDR1 Ab4
15 L-CDR1 Ab5
16 L-CDR1 Ab6
17 L-CDR1 Ab7
18 L-CDR1 AblO
19 L-CDR1 Abll
20 L-CDR1 Abl2
21 L-CDR1 Abl 3
22 L-CDR1 Abl4
23 L-CDR1 Abl 5
SEQ Π) NO TYPE DESCRIPTION
24 L-CDR1 Abl 6
25 L-CDR1 Abl7
26 L-CDR1 Abl 8
27 L-CDR1 Abl9
28 L-CDR1 Ab20
29 L-CDR1 Ab21
30 L-CDR1 Ab22
31 L-CDR1 Ab23
32 L-CDR1 Ab24
33 L-CDR1 Ab25
34 L-CDR2 Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, and Ab25
35 L-CDR3 Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, and Ab25
36 LC Abl
37 LC Ab2
38 LC Ab3
39 LC Ab4
40 LC Ab5
41 LC Ab6
42 LC Ab7
43 LC AblO
44 LC Abll
45 LC Abl2
46 LC Abl3
47 LC Abl4
48 LC Abl5
49 LC Abl6
50 LC Abl 7
51 LC Abl 8
52 LC Abl 9
53 LC Ab20
54 LC Ab21
55 LC Ab22
56 LC Ab23
57 LC Ab24
58 LC Ab25
59 VH Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, Ab25, and KGN
60 Vl Ab26
SEQIDNO TYPE DESCRIPTION
61 Vl Abl
62 Vl Ab2
63 Vl Ab3
64 Vl Ab4
65 Vl Ab5
66 Vl Ab6
67 Vl Ab7
68 Vl AblO
69 Vl Abll
70 Vl Abl2
71 Vl Abl3
72 Vl Abl4
73 Vl Abl5
74 Vl Abl6
75 Vl Abl7
76 Vl Abl 8
77 Vl Abl 9
78 Vl Ab20
79 Vl Ab21
80 Vl Ab22
81 Vl Ab23
82 Vl Ab24
83 Vl Ab25
84 Vh (nucleic acid) Ab26, Abl, Ab2, Ab3, Ab4, Ab5, Ab6, Ab7, AblO, Abll, Abl2, Abl3, Abl4, Abl5, Abl6, Abl7, Abl8, Abl9, Ab20, Ab21, Ab22, Ab23, Ab24, Ab25, and KGN
85 Vl (nucleic acid) Ab26
86 L-CDR1 KSSQSLLYSNXKTYLN, wherein X is not glycine.
87 Peptide CD52 peptide mimotope.
88 Vl (nucleic acid) Abl
89 Vl (nucleic acid) Ab2
90 Vl (nucleic acid) Ab3
91 Vl (nucleic acid) Ab4
92 Vl (nucleic acid) Ab5
93 Vl (nucleic acid) Ab6
94 Vl (nucleic acid) Ab7
95 Vl (nucleic acid) AblO
96 Vl (nucleic acid) Abll
97 Vl (nucleic acid) Abl2
98 Vl (nucleic acid) Abl 3
99 Vl (nucleic acid) Abl4
100 Vl (nucleic acid) Abl 5
101 Vl (nucleic acid) Abl 6
102 Vl (nucleic acid) Abl7
SEQ W NO TYPE DESCRIPTION
103 Vl (nucleic acid) Abl 8
104 Vl (nucleic acid) Abl 9
105 Vl (nucleic acid) Ab20
106 Vl (nucleic acid) Ab21
107 Vl (nucleic acid) Ab22
108 Vl (nucleic acid) Ab23
109 Vl (nucleic acid) Ab24
110 Vl (nucleic acid) Ab25
111 Vl (nucleic acid) KGN
112 LC (nucleic acid) Abl
113 LC (nucleic acid) Ab2
114 LC (nucleic acid) Ab3
115 LC (nucleic acid) Ab4
116 LC (nucleic acid) Ab5
117 LC (nucleic acid) Ab6
118 LC (nucleic acid) Ab7
119 LC (nucleic acid) AblO
120 LC (nucleic acid) Abll
121 LC (nucleic acid) Abl2
122 LC (nucleic acid) Abl 3
123 LC (nucleic acid) Abl 4
124 LC (nucleic acid) Abl5
125 LC (nucleic acid) Abl 6
126 LC (nucleic acid) Abl7
127 LC (nucleic acid) Abl 8
128 LC (nucleic acid) Abl9
129 LC (nucleic acid) Ab20
130 LC (nucleic acid) Ab21
131 LC (nucleic acid) Ab22
132 LC (nucleic acid) Ab23
133 LC (nucleic acid) Ab24
134 LC (nucleic acid) Ab25
135 LC (nucleic acid) KGN

Claims (5)

What is Claimed is:
1. An anti-human CD52 antibody or an antigen-binding fragment thereof, comprising a heavy chain variable région and a light chain variable région, wherein said heavy chain variable région comprises:
(a) the heavy chain CDR1 of SEQ ID NO: 7;
(b) the heavy chain CDR2 of SEQ ID NO: 8; and (c) the heavy chain CDR3 of SEQ ID NO: 9, wherein said light chain variable région comprises (a) the light chain CDR1 of SEQ ID NO: 86;
(b) the light chain CDR2 of SEQ ID NO: 34; and (c) the light chain CDR3 of SEQ ID NO: 35.
2. The antibody or fragment according to claim 1, wherein said antibody or fragment demonstrates increased stability relative to an antibody comprising the heavy chain amino acid sequence of SEQ ID NO: 3 without the signal sequence and the light chain amino acid sequence of SEQ ID NO: 4 without the signal sequence.
3. The antibody or fragment according to claim 1, wherein residue 11 in SEQ ID NO: 86 is K, R, Q, H, S, Y, A, D, E, F, I, L, M, N, T, or V (SEQ ID NO: 136).
4. The antibody or fragment according to claim 1, wherein residue 11 in SEQ ID NO: 86 is K (SEQ ID NO: 24).
/
5. The antibody or fragment according to claim 1, wherein residue 11 in SEQ ID NO: 86 is R (SEQ ID NO: 29).
6. The antibody or fragment according to claim 1, wherein residue 11 in SEQ ID NO: 86 is Q (SEQ ID NO: 28).
7. The antibody or fragment according to any one of claims 1-6, wherein said heavy chain variable région comprises SEQ ID NO: 59.
8. The antibody or fragment according to any one of claims 1 -6, wherein said light chain variable région comprises a sequence selected from the group consisting of SEQ ID NOs: 68, 69, 70, 71,72, 73, 74,75,76, 77, 78, 79, 80, 81, 82, and 83.
9. The antibody or fragment according to any one of claims 1-6, wherein said heavy and light chain variable régions comprise:
a) SEQ ID NOs: 59 and 68, respectively;
b) SEQ ID NOs: 59 and 69, respectively;
c) SEQ ID NOs: 59 and 70, respectively;
d) SEQ ID NOs: 59 and 71, respectively;
e) SEQ ID NOs: 59 and 72, respectively;
f) SEQ ID NOs: 59 and 73, respectively;
g) SEQ ID NOs: 59 and 74, respectively;
h) SEQ ID NOs: 59 and 75, respectively;
i) SEQ ID NOs: 59 and 76, respectively;
j) SEQ ID NOs: 59 and 77, respectively;
k) SEQ ID NOs: 59 and 78, respectively;
l) SEQ ID NOs: 59 and 79, respectively;
m) SEQ ID NOs: 59 and 80, respectively;
n) SEQ ID NOs: 59 and 81, respectively;
o) SEQ ID NOs: 59 and 82, respectively; or
p) SEQ ID NOs: 59 and 83, respectively.
10. The antibody or fragment according to any one of claims 1-6, comprising a heavy chain of SEQ ID NO: 3 without the signal sequence.
11. The antibody or fragment according to any one of claims 1 -6, comprising a light chain selected from the group consisting of SEQ ID NOs: 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, and 58.
12. An antibody comprising:
(a) a heavy chain amino acid sequence of SEQ ID NO: 3 without the signal sequence and a light chain amino acid sequence of SEQ ID NO: 49;
(b) a heavy chain amino acid sequence of SEQ ID NO: 3 without the signal sequence and a light chain amino acid sequence of SEQ ID NO: 53; or (c) a heavy chain amino acid sequence of SEQ ID NO: 3 without the signal sequence and a light chain amino acid sequence of SEQ ID NO: 54.
13. The antibody according to any one of claims 1-9 that is an immunoglobulin G (IgG).
14. The fragment according to any one of claims 1-11, wherein said fragment is selected from the group consisting of an scFv fragment, an Fab fragment, an Fv fragment, an F(ab')2 fragment, a minibody, a diabody, a triabody, and a tetrabody.
15. The antibody or fragment according to any one of claims 1 -9, wherein said antibody comprises a human Fc région.
16. The antibody or fragment according to claim 15, wherein said human Fc région is a human IgGl, IgG2, IgG3, or IgG4 Fc région.
17. The antibody or fragment according to claim 15, wherein said human Fc région is a human IgGl Fc région.
18. The antibody or fragment according to claim 15, wherein said human Fc région is a human IgG2 Fc région.
19. The antibody or fragment according to claim 15, wherein said human Fc région is a human IgG3 Fc région.
20. The antibody or fragment according to claim 15, wherein said human Fc région is a human IgG4 Fc région.
21. The antibody or fragment according to any one of claims 1 -20, wherein said antibody is monoclonal.
22. The antibody or fragment according to any one of claims 1-21, wherein said antibody is humanized.
23. The antibody or fragment according to any one of claims 1-22, wherein the heavy chain C-terminal lysine is cleaved.
24. An isolated nucleic acid molécule comprising a nucléotide sequence that encodes the heavy chain or an antigen-binding fragment thereof, or the light chain or an antigen-binding fragment thereof, or both, of the antibody or fragment according to any one of claims 1-23.
25. The isolated nucleic acid molécule according to claim 24, comprising the nucléotide sequence of SEQ ID NO: 95, 96, 97, 98, 99,100,101, 102, 103, 104, 105,106, 107, 108, 109,110, 119, 120,121, 122, 123,124, 125, 126, 127, 128,129, 130, 131,132, 133, or 134.
26. A recombinant vector comprising the nucleic acid molécule of claim 24.
27. The vector according to claim 26, wherein said vector is an expression vector.
* - s62
28. An isolated host cell comprising the vector according to claim 26 or
27.
29. An isolated cell line that produces the antibody or fragment according to any one of claims 1-23 or the heavy or light chain of the antibody or fragment.
30. A method of making an anti-human CD52 antibody or an antigenbinding fragment thereof, comprising (1) maintaining a cell comprising a nucléotide sequence encoding the heavy chain or an antigen-binding fragment thereof, and a nucléotide sequence encoding the light chain or an antigen-binding fragment thereof, of the antibody or fragment according to any one of claims 1-23 under conditions appropriate for expression of the antibody or fragment; and (2) recovering the antibody or fragment.
31. A composition comprising the antibody or an antigen-binding fragment according to any one of claims 1-23 and a pharmaceutically acceptable vehicle or carrier.
32. A method for treating a patient in need thereof, comprising administering to the patient an effective amount of the antibody or an antigen-binding fragment according to any one of claims 1-23.
33. A method for treating an autoimmune disease in a patient in need thereof, comprising administering to the patient an antibody or an antigen-binding fragment according to any one of claims 1-23.
'* ''' K
34. The method according to claim 33, wherein the autoimmune disease is multiple sclerosis.
35. A method for treating cancer in a patient in need thereof, comprising administering to the patient an antibody or an antigen-binding fragment according to any one of claims 1-23.
36. The method according to claim 35, wherein the cancer is chronic lymphocytic leukemia.
37. A method of inhibiting angiogenesis in a patient in need thereof, comprising administering to the patient an antibody or an antigen-binding fragment according to any one of claims 1-23.
38. Use of the antibody or antigen-binding fragment according to any one of claims 1-23 for the préparation of a médicament for treating an autoimmune disease in a patient in need thereof.
39. The use of claim 38, wherein the autoimmune disease is multiple sclerosis.
40. Use of the antibody or antigen-binding fragment according to any one of claims 1-23 for the préparation of a médicament for treating cancer in a patient in need thereof.
41.
leukemia.
5 42.
The use of claim 40, wherein the cancer is chronic lymphocytic
Use of the antibody or antigen-binding fragment according to any one of claims 1-23 for the préparation of a médicament for inhibiting angiogenesis in a patient in need thereof.
OA1201500378 2013-03-15 2014-03-13 Anti-CD52 antibodies. OA17634A (en)

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