NZ759327B2 - Aminothiazole compounds as protein kinase inhibitors - Google Patents
Aminothiazole compounds as protein kinase inhibitors Download PDFInfo
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- NZ759327B2 NZ759327B2 NZ759327A NZ75932718A NZ759327B2 NZ 759327 B2 NZ759327 B2 NZ 759327B2 NZ 759327 A NZ759327 A NZ 759327A NZ 75932718 A NZ75932718 A NZ 75932718A NZ 759327 B2 NZ759327 B2 NZ 759327B2
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Classifications
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/495—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
- A61K31/505—Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
- A61K31/506—Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim not condensed and containing further heterocyclic rings
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/535—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one oxygen as the ring hetero atoms, e.g. 1,2-oxazines
- A61K31/5355—Non-condensed oxazines and containing further heterocyclic rings
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/535—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one oxygen as the ring hetero atoms, e.g. 1,2-oxazines
- A61K31/5375—1,4-Oxazines, e.g. morpholine
- A61K31/5377—1,4-Oxazines, e.g. morpholine not condensed and containing further heterocyclic rings, e.g. timolol
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D417/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
- C07D417/02—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
- C07D417/12—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings linked by a chain containing hetero atoms as chain links
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D417/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
- C07D417/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings
Abstract
Aminothiazole compounds of Formula (I) shown below and pharmaceutical compositions containing one of such compounds. Also disclosed are methods of inhibiting a tyrosine kinase and treating cancer associated with a tyrosine kinase with one of the aminothiazole compounds.
Description
(12) d patent specificaon (19) NZ (11) 759327 (13) B2
(47) Publicaon date: 2021.12.24
(54) AMINOTHIAZOLE NDS AS N KINASE INHIBITORS
(51) Internaonal Patent Classificaon(s):
A61K 31/4439A61K 31/496 A61K 31/506 C07D 417/14 A61P 35/00
(22) Filing date: (73) Owner(s):
2018.06.13 AL HEALTH RESEARCH INSTITUTES
(23) Complete specificaon filing date: (74) Contact:
2018.06.13 Eagar & ates Pty Ltd
(30) Internaonal Priority Data: (72) Inventor(s):
US 62/518,855 2017.06.13 SHIH, Chuan
JIAANG, Weir-Torn
(86) Internaonal Applicaon No.: TSAI, Hui-Jen
(87) Internaonal Publicaon number:
WO/2018/231910
(57) Abstract:
Aminothiazole compounds of Formula (I) shown below and pharmaceucal composions
containing one of such compounds. Also disclosed are methods of inhibing a tyrosine kinase and
treang cancer associated with a tyrosine kinase with one of the aminothiazole compounds.
NZ 759327 B2
AMINOTHIAZOLE NDS AS PROTEIN KINASE INHIBITORS
BACKGROUND
Protein s are important in cellular signal ys that regulate various cell
functions, including differentiation, proliferation, migration, and apoptosis. Deregulation of
protein kinases is implicated in cancer and a number of other diseases.
Tyrosine kinases, a subclass of protein kinases, te target protein function through
transfer of phosphate from ATP to the hydroxyl group of a target protein tyrosine. FMS—like
tyrosine kinase 3 (“FLT3”), vascular endothelial growth factor or (“VEGFR”), and
tyrosine—protein kinase Kit (“c—Kit”) are three tyrosine kinases that have been studied as
tive therapeutic targets in cancer treatment.
ons of FLT3, a receptor tyrosine kinase, can lead to pment of cancer, e.g.,
acute myeloid leukemia. See Pratz et al., Current Drug Targets, 2010, 11(7), 781—9.
By binding to VEGFR and activating it via transphosphorylation, vascular endothelial
growth factor, a signal protein, stimulates growth of new blood vessels. VEGFR has been
identified as the predominant regulator of tumor angiogenesis. See Hicklin et al., J Clin Oncol.,
2005, 23, 1011—1027.
c—Kit, also a receptor tyrosine kinase, is involved in ellular signaling. The mutated
form of c—Kit plays a crucial role in occurrence of some cancers. Inhibition of c—Kit has proved
to be effective in treating gastrointestinal stromal tumor, acute myeloid leukemia, and melanoma.
See Babaei et al., Drug Des Devel Ther., 2016 10, 2443-2459.
Aminothiazoles compounds, extensively explored as potent tyrosine kinase inhibitors,
t several challenges as drug candidates. They possess poor kinase selectivity, often cause
animal death in toxicity studies, and generally lack adequate in viva exposure to exert desirable
efficacy in pre—clinical or clinical s.
There is a need to develop new aminothiazole compounds that specifically inhibit certain
tyrosine kinases, demonstrate desirable safety es, and exert sufficient in vivo efficacy in
treating target cancers.
SUMMARY
The present invention is based on unexpected discoveries that certain hiazole
compounds effectively inhibit multiple tyrosine s, e.g., FLT3, VEGFR, and c—Kit.
In one aspect, this ion relates to aminothiazole compounds of Formula (I):
(I),
in which R1 is CH, alkyl or C1_6 kyl; X is O or NR3, in which Ra is H or C1_6 alkyl; Y is
CRbRC or NRd, in which each of Rb and RC, ndently, is H, halo, C1_6 alkyl, C1_6 alkoxyl, or
amino, or Rb, together with Ra, the carbon atom bonded to Rb, and the nitrogen atom bonded to
Ra, is C340 heterocycloalkyl, and Rd is H or C1_6 alkyl, or Rd, together with R21 and the nitrogen
atoms bonded to Rd and Ra, is €3-10 heterocycloalkyl; R2 is —CH2CH2Re or NRng, in which Re is
H, halo, CH, alkyl, or OR}1 and each of Rf and R3, independently, is C1_6 alkyl or C3_g cycloalkyl,
Rh being H or CH, alkyl, or Rh, together with Rd, the oxygen atom bonded to Rh, and the nitrogen
atom bonded to Rd, being €3-10 heterocycloalkyl; and R3 is heteroaryl.
The term “alkyl” herein refers to a saturated, linear or branched hydrocarbon moiety,
such as —CH3 or branched —C3H7. The term “cycloalkyl” refers to a non—aromatic, monocyclic,
bicyclic, tricyclic, or tetracyclic hydrocarbon , such as cyclohexyl, cyclohexen-3—yl, or
adamantyl. The term “alkoxyl” refers to an —O—alkyl radical. Examples of alkoxyl include, but
are not limited to, methoxy, , n—propoxy, isopropoxy, n—butoxy, iso—butoxy, sec—butoxy,
and tert—butoxy. The term “thioalkyl” refers to an —S—alkyl l. Examples of thioalkyl
include, but are not limited to, methylthiol, hiol, and thiol. The te1m
“heterocycloalkyl” refers to a non-aromatic, monocyclic, bicyclic, tricyclic, or tetracyclic moiety
having one or more ring heteroatoms (e.g., N, O, or S). Examples of heterocycloalkyl include,
but are not limited to, 4—morpholinyl, l—piperazinyl, 4—tetrahydropyranyl, and 4—pyranyl. The
term “heteroaryl” refers to a moiety having one or more aromatic rings that contain at least one
heteroatom (e.g., N, O, or S). Examples of heteroaryl moieties include furyl, furylene, fluorenyl,
pyrrolyl, thienyl, oxazolyl, imidazolyl, thiazolyl, pyridyl, dinyl, quinazolinyl, quinolyl,
isoquinolyl, and indolyl.
Alkyl, thioalkyl, alkoxyl, lkyl, heterocycloalkyl, and heteroaryl mentioned herein
include both substituted and unsubstituted es, unless specified otherwise. Possible
substituents on cycloalkyl, heterocycloalkyl, and heteroaryl include CHO alkyl, €2-10 alkenyl, C2-
alkynyl, €3-20 lkyl, €3-20 lkenyl, €1-20 cycloalkyl, C1_20 heterocycloalkenyl,
C140 alkoxy, aryl, aryloxy, heteroaryl, heteroaryloxy, amino, CHO mino, C140
dialkylamino, arylamino, diarylamino, hydroxyl, halogen, thio, €1-10 alkylthio, arylthio, €1-10
alkylsulfonyl, arylsulfonyl, acylamino, aminoacyl, aminothioacyl, amidino, guanidine, ureido,
cyano, nitro, acyl, thioacyl, acyloxy, carboxyl, and carboxylic ester. On the other hand, possible
substituents on alkyl e all of the above—recited substituents except €1-10 alkyl, €2-10 alkenyl,
and €2-10 alkynyl. Cycloalkyl, heterocycloalkyl, aryl, and aryl can also be fused with each
other.
The aminothiazole nds described above include the compounds themselves, as
well as their salts, prodrugs, and solvates, if applicable. A salt, for example, can be formed
between an anion and a positively charged group (e.g., amino) on an aminothiazole compound.
Suitable anions include chloride, bromide, iodide, sulfate, nitrate, phosphate, citrate,
methanesulfonate, trifluoroacetate, acetate, malate, tosylate, tartrate, fumurate, glutamate,
glucuronate, lactate, ate, and maleate. Likewise, a salt can also be formed between a cation
and a negatively charged group (e.g., carboxylate) on an aminothiazole compound. Suitable
cations e sodium ion, potassium ion, magnesium ion, calcium ion, and an ammonium
cation such as tetramethylammonium ion. The aminothiazole compounds also include those
salts containing quaternary nitrogen atoms. Examples of prodrugs include esters and other
pharmaceutically acceptable derivatives, which, upon administering to a subject, are capable of
providing active aminothiazole compounds. A e refers to a complex formed between an
active aminothiazole compound and a pharmaceutically acceptable solvent. Examples of a
pharmaceutically acceptable t include water, l, isopropanol, ethyl acetate, acetic
acid, and ethanolamine.
In r aspect, this invention relates to a method for inhibiting a ne kinase, e.g.,
FLT3, VEGFR, and c—Kit. The method includes contacting the tyrosine kinase with an effective
amount of one or more of the above-described aminothiazole compounds.
2018/037221
Also within the scope of this invention is a method for treating cancer associated with a
tyrosine kinase. The method includes administering to a subject in need thereof an effective
amount of one or more of the hiazole compounds of Formula (I) described above.
The tyrosine kinase associated to a cancer can be a wild type or mutant. Examples of the
tyrosine kinase include, but are not limited to, FLT3, FLT4, VEGFR, platelet—derived growth
factor receptor (PDGFR) A, PDGFR B, c—Kit, c—Src (SRC), tyrosine—protein kinase Lyn (LYN)
A, LYN B, rearranged during transfection tyrosine kinase (RET), lymphocyte—specific protein
tyrosine kinase, Gardner—Rasheed feline sarcoma viral oncogene homolog, din domain
receptor 1, kinase insert domain receptor, B lymphocyte kinase, tyrosine—protein kinase Yes,
Abelson murine leukemia viral oncogene homolog l (ABLl), tyrosine—protein kinase Tek, RET
V804L, RET Y79lF, FLT3 D835Y, PDGFR A V56lD, or ABLl T3151.
In an exemplary method, the aminothiazole compounds of Formula (I) are used for
treating cancer associated with FLT3, VEGFR, or c—Kit.
Examples of the cancer include acute myeloid leukemia, ma, c myelogenous
leukemia, acute lymphoblastic leukemia, chronic lymphocytic leukemia, Hodgkin’s disease, non—
Hodgkin’s lymphoma, B—cell lymphoma, multiple myeloma, strom’s lobulinemia,
ysplastic syndrome, pancreatic cancer, bladder cancer, ctal cancer, breast cancer,
male genital tract cancer, renal cancer, hepatocellular cancer, lung cancer, ovarian cancer,
cervical cancer, uterus cancer, gestational trophoblastic disease, gastric cancer, bile duct cancer,
gallbladder cancer, small intestine cancer, esophageal cancer, oropharyngeal cancer,
aryngeal cancer, eye , nerve cancer, head and neck cancer, melanoma,
plasmacytoma, endocrine gland neoplasm, neuroendocrine cancer, brain tumor, bone cancer, and
a (e.g., gastrointerstinal stromal tumor or GIST).
Further within the scope of this invention is a pharmaceutical composition containing one
or more of the above—described aminothiazole compounds of Formula (I). The pharmaceutical
composition can be used for treating cancer.
This invention also encompasses use of one or more of the above—described
hiazole compounds of Formula (I) for the manufacture of a medicament for treating
cancer.
The term “treating” or ment” refers to administering one or more of the
aminothiazole compounds to a subject, who has an described disease, i.e., cancer, a
symptom of such a disease, or a predisposition toward such a disease, with the e to confer
a therapeutic effect, e. g., to cure, relieve, alter, affect, ameliorate, or t the above-described
disease, the symptom of it, or the position toward it. “An effective amount” refers to the
amount of an active compound that is required to confer the therapeutic effect. Effective doses
will vary, as recognized by those skilled in the art, depending on the types of disease treated,
route of administration, excipient usage, and the possibility of co—usage with other eutic
treatment.
To practice the method of the present invention, a composition having one or more of the
above—described hiazole compounds can be administered parenterally, orally, nasally,
rectally, topically, or buccally. The term teral” as used herein refers to subcutaneous,
intracutaneous, enous, intraperitoneal, intramuscular, intraarticular, intraarterial,
intrasynovial, intrasternal, hecal, intralesional, or ranial ion, as well as any
suitable infusion technique.
A sterile able composition can be a solution or suspension in a non—toxic
parenterally acceptable diluent or solvent, such as a solution in 1,3—butanediol. Among the
acceptable vehicles and solvents that can be employed are mannitol, water, Ringer’s solution,
and isotonic sodium chloride solution. In addition, fixed oils are tionally employed as a
solvent or suspending medium (e.g., synthetic mono— or di—glycerides). Fatty acid, such as oleic
acid and its glyceride derivatives are useful in the preparation of injectables, as are natural
pharmaceutically acceptable oils, such as olive oil and castor oil, ally in their
polyoxyethylated versions. These oil solutions or suspensions can also contain a long chain
alcohol diluent or dispersant, carboxymethyl cellulose, or similar sing agents. Other
commonly used surfactants such as Tweens and Spans or other similar emulsifying agents or
bioavailability enhancers which are commonly used in the manufacture of pharmaceutically
acceptable solid, liquid, or other dosage forms can also be used for the purpose of formulation.
A composition for oral administration can be any orally acceptable dosage form including
capsules, tablets, emulsions and aqueous suspensions, dispersions, and ons. In the case of
tablets, ly used carriers include lactose and corn starch. Lubricating agents, such as
magnesium stearate, are also typically added. For oral administration in a capsule form, useful
diluents include lactose and dried corn starch. When aqueous suspensions or emulsions are
administered orally, the active ingredient can be suspended or dissolved in an oily phase
combined with emulsifying or suspending agents. If d, certain sweetening, flavoring, or
coloring agents can be added.
A nasal aerosol or inhalation composition can be prepared according to techniques well
known in the art of pharmaceutical formulation. For example, such a composition can be
prepared as a solution in saline, employing benzyl alcohol or other suitable preservatives,
absorption promoters to enhance bioavailability, fluorocarbons, and/or other solubilizing or
dispersing agents known in the art.
A composition having one or more of the above—described aminothiazole compounds can
also be administered in the form of suppositories for rectal administration.
The carrier in the pharmaceutical composition must be “acceptable” in the sense that it is
compatible with the active ingredient of the ition (and preferably, capable of stabilizing
the active ingredient) and not deleterious to the subject to be treated. One or more solubilizing
agents can be utilized as pharmaceutical ents for delivery of an active l,5—diphenyl—penta—
1,4—dien—3—one compound. Examples of other carriers include colloidal silicon oxide,
magnesium stearate, cellulose, sodium lauryl sulfate, and D&C Yellow # 10.
The details of one or more embodiments of the invention are set forth in the ption
below. Other features, s, and advantages of the invention will be nt from the
description and from the claims.
DETAILED DESCRIPTION
sed in detail are hiazole compounds of Formula (I):
(I),
in which variables R1, R2, R3, X, and Y are defined in the SUMMARY section above.
Typically, compounds of Formula (I) have R3 being 5— or 6—membered heteroaryl
substituted with one or more Z moieties independently, in which n is 0 or 1 and Z is H,
halo, CN, OH, CF3, CH, alkyl, or C1_6 alkoxyl; or have R3 being 5- or ered heteroaryl
fused with a phenyl ring substituted with one or more substituents independently selected from
the group consisting of H, halo, CN, OH, CF3, C1_6 alkyl, and C1_6 alkoxyl. Exemplary
compounds have R3 being ered heteroaryl substituted with one or more (CH2)nZ moieties
ndently, in which n is 0 or 1 and Z is H, halo, CN, OH, CF3, CH; alkyl, or C1_6 alkoxyl.
Two examples of R3 are pyridyl and pyrimidyl.
A group of the above—described novel aminothiazole compounds are nds of
Formula (II):
S’\<N£<X’\’++N \\ /N
R3/K/ Y\R2
(H),
in which R1 is C1_6 alkyl.
In one subset, nds of Formula (II) have X being O, Y being NRd, and R2 being —
CHZCHzRe, in which Re is ORh, Rh, together with Rd, the oxygen atom bonded to Rh, and the
en atom bonded to Rd, being C340 heterocycloalkyl. Compounds of this subset can have R3
being 5— or 6—membered heteroaryl substituted with one or more (CH2)nZ moieties
independently, in which n is 0 or 1 and Z is H, halo, CN, OH, CF3, CH, alkyl, or CH, alkoxyl; or
is 5— or 6—membered heteroaryl fused with a phenyl ring substituted with one or more
substituents independently selected from H, halo, CN, OH, CF3, CH, alkyl, and CH, alkoxyl. For
example, R3 can be pyridyl or pyrimidyl. Exemplary compounds include, but are not limited to,
the ing compounds:
3V KM:H
N O_\_ —\—Nfl \
\ \
\ O
N\_/O | I
N / and N/
In another subset, compounds of Formula (II) have X being NRa and Y being CRbRC or
NRd, in which Ra, together with Rb, the nitrogen atom bonded to Ra, and the carbon atom bonded
to Rb, is €3-10 heterocycloalkyl; RC is H, halo, C1_6 alkyl, C1_6 alkoxyl, or amino; and Rd, together
with R21 and the nitrogen atoms bonded to R21 and Rd, is €3-10 heterocycloalkyl.
Of note, these nds can have X being NRa, Y being CRbRC, and R2 being NRng, in
which Ra, together with Rb, the nitrogen atom bonded to Ra, and the carbon atom bonded to Rb, is
C310 heterocycloalkyl; RC is H, halo, C1_6 alkyl, C1_6 alkoxyl, or amino; and each of Rf and Rg is
C1_6 alkyl. They lly have R3 being 5— or 6—membered heteroaryl substituted with one or
more (CH2)nZ moieties independently, in which n is O or 1 and Z is H, halo, CN, OH, CF3, CH,
alkyl, or C1_6 alkoxyl; or is 5— or 6-membered heteroaryl fused with a phenyl ring substituted
with one or more substituents independently selected from H, halo, CN, OH, CF3, C1_6 alkyl, and
CH, alkoxyl. R3 can be pyridyl or pyrimidyl. ary compounds include, but are not limited
to, the following compounds:
N\ and
/ /
On the other hand, the compounds in this subset can have X being NR3, Y being NRd,
and R2 being —CH2CH2Re, in which Ra, er with Rd and the nitrogen atoms bonded to Ra
and Rd, is €3-10 heterocycloalkyl; and Re is H, halo, or ORh, Rh being H or CH, alkyl. In general,
these compounds have R3 being 5- or 6-membered heteroaryl substituted with one or more
(CH2)nZ moieties ndently, in which n is O or 1 and Z is H, halo, CN, OH, CF3, CH, alkyl,
or CH, alkoxyl; or is 5— or 6-membered heteroaryl fused with a phenyl ring substituted with one
or more substituents independently selected from H, halo, CN, OH, CF3, C1_6 alkyl, and C1_6
alkoxyl. For instance, R3 is pyridyl or pyrimidyl. Exemplary compounds include, but are not
limited to, the following compounds:
N N
\_ N \_\ _\
HN \ N
/ s\HNMN
S \ N ON
\N N \\~
\ 3 N\
| L N
/N N l/
r group of the novel aminothiazole compounds set forth above are compounds of
Formula (111):
HNMN
S:\<N X’\——Y\
(111),
in which R1 is C1_6 alkyl.
An exemplary compound of formula (III) is
2018/037221
/ \ \_
Listed below are exemplary compounds of this invention, each assigned a compound
number.
N4 N4 N4
2NMN 2M 2NMN
N O
N\\ x
N\ N/
4 / 5
N_ N_
HN \ /N
S \ SHN\/N\
N N
I ON \\ O
/ N l/ N
N \_ N
11
S/(NMNHN N
\ ON
/ \ \_
Also within this invention is a pharmaceutical composition containing one or more of the
aminothiazole compounds of Formula (I) for treating cancer.
Further covered by this invention is a method for treating cancer, the method including
administering to a subject in need thereof an effective amount of a compound of a (1).
Synthetic chemistry transformations and protecting group methodologies (protection and
de-protection) used for synthesizing the compounds of Formula (I) are well known in the art.
See, for example, R. , Comprehensive Organic Transformations (2m1 Ed., VCH Publishers
1999); P. G. M. Wuts and T. W. Greene, ’s Protective Groups in Organic Synthesis (4th
Ed., John Wiley and Sons 2007); L. Fieser and M. Fieser, Fieser and Fieser’s Reagents for
Organic Synthesis (John Wiley and Sons 1994); L. Paquette, ed., Encyclopedia of ts for
c Synthesis (211d ed., John Wiley and Sons 2009); and G. J. Yu et al., J. Med. Chem. 2008,
], 6044-6054.
The compounds of Formula (I) thus prepared can be initially screened using biochemical
assays, e. g., the kinase assays described in EXAMPLES 2—4 below, or cellular assays, e.g., the
in vitro anticancer activity assay described in EXAMPLE 5 below, for their y in inhibiting
tyrosine kinases or inhibiting the growth of cancer cells expressing certain tyrosine s.
They can be subsequently ted using in viva assays, e.g., a xenograft animal model assay,
for their activity in suppressing tumor growth in a mammal. The selected compounds can be
further tested to verify their efficacy in treating cancer. For e, a compound can be
administered to an animal (e.g., a mouse) having cancer and its therapeutic effect is then
assessed. Based on the results, appropriate dosage ranges and administration routes can be
investigated and ined.
t further elaboration, it is believed that one skilled in the art can, based on the
above description, utilize the present invention to its fullest extent. The following specific
examples are, therefore, to be construed as merely illustrative, and not limitative of the
remainder of the disclosure in any way whatsoever. All publications cited herein are
incorporated by reference in their entirety.
Shown in EXAMPLE 1 below are the synthesis and characterization of 13 exemplary
compounds of Formula (I). The analytical data for the compounds thus prepared are also set
forth in E 1 and the procedures for testing these nds are described in
EXAMPLES 2—5 that .
All chemicals and ts were purchased from commercial suppliers and used as
received. All reactions were carried out under an atmosphere of dry nitrogen. Reactions were
monitored by TLC using Merck 60 F254 silica gel glass backed plates (5 X 10 cm); and zones
were detected Visually under ultraviolet irradiation (254 nm) or by spraying with
phosphomolybdic acid reagent (Aldrich) followed by heating at 80°C. All flash column
chromatography was performed with Merck Kieselgel 60, No. 9385, 230—400 mesh ASTM silica
gel as the stationary phase. Proton (1H) r magnetic resonance spectra were measured on a
Varian Mercury—300 or Varian Mercury—400 spectrometer. Chemical shifts were recorded in
parts per million (ppm) on the delta (8) scale relative to the resonance of the solvent peak. The
following abbreviations were used to describe coupling: 3 = singlet; d = t; t = triplet; q =
quartet; quin = quintet; br = broad; and m = multiplet. LCMS data were measured on an Agilent
MSD—llOO ESI—MS/MS, Agilent 1200 series LC/MSD VL, and Waters Acquity UPLC—ESI—
MS/MS system.
EXAMPLE 1: Synthesis of nds 1-13
Compounds 1-13 were prepared according to the synthetic route shown in Scheme 1
below. Among the listed reagents, TEA is ylamine, KOAc is ium acetate, Pd(PPh3)4 is
tetrakis(triphenylphosphine)palladium(0), DMAc is N,N—dimethylacetamide, CsF is cesium
fluoride, HCl is hydrochloric acid, NaHC03 is sodium bicarbonate, NaH is sodium hydride,
NMP is 1—methyl—2—pyrrolidinone, KOH ium hydroxide, and DMSO is dimethyl ide.
O o
E / a S
> E / NR Py S PY
b c, d S
N o N) \E k N
H PyCI' | N/>—H | N/>—NH2
A B
N c D
N \ \
py= I |
/ /
N e N/
II/ \ N
\ N
I |
N / / CIMCI
LN W ' ”Hz
\ R PyE />—NH /
Py />—N RH
N ' ' '
N H
2HC| R=2° amines or E N/
amine o.
_ [N gfiynqm-i-grglazm--
R = 4-(2-hydroxyethyl)-morpholIne CIMCI 331235.219)
Compounds 1-
Scheme 1. Reagents and conditions: (a) TEA, CHzClz, 0 CC to rt; (b) KOAc, Pd(PPh3)4, DMAc,
150 OC (KOAc is replaced by CsF for Py= pyridinyl); (c) 12N HCl, H20, reflux;
(d) NaHCO3, H20, rt; (e) NaH, NMP, 0 0C; (1) DMSO, RH, 100 0C or diglyme, KOH,
160 0C for RH = 4-(2-hydroxyethyl)-morpholine; and (g) 6N HCl, 0 OC.
Step 1. Synthesis 0f2,2-dimethyl-N—thiazol—2-yl-pr0pi0namide B
To a mixture of 2—aminothiazole A (300 mmol) and triethylamine (330 mmol) in
anhydrous CH2C12 (250 mL) at 0 °C was added trimethylacetyl chloride (310 mmol) and the
mixture was stirred at room temperature under an argon atmosphere for 1 h. The mixture was
washed with 6 N HCl (60 mL) and the organic layer was separated, dried over ium
sulfate (MgSO4), and concentrated under reduced pressure. The residue was purified by
chromatography on silica gel (20% hexane) to give the titled product B as an ite
solid (72%). 1H NMR (300 MHz, DMSO-d6): 5 11.75 (s, 1H), 7.46 (d, J = 6.0 Hz, 1H), 7.17 (d,
J = 6.0 Hz, 1H), 1.22 (s, 9H); MS (ES+) m/z calcd. for OSI ; found: 185.1
(M+H+).
Step II. Synthesis of Compound C (Py= pyridin-3—yl, pyridinyl, and pyrimidin-S-yl)
A mixture of 2,2—dimethyl-N—thiazol—2—yl—propionamide B (30 mmol), chloropyridine
(30 mmol), potassium acetate (120 mmol) and tetrakis(triphenylphosphine)palladium(0)
(1.5 mmol) in N,N—dimethylacetamide (60 mL) was heated at 150 0C under an argon atmosphere
for 24 h. Most of solvent was removed by distillation (120 OC/160 mm Hg) and the residue was
washed with water (250 mL). The precipitate was collected by filtration, redissolved in 10%
CH2C12 (200 mL) and filtered through a pad of Celite. The filtrate was concentrated
under reduced pressure and purified by chromatography on silica gel (1% HzClz) to
give the desired product as an off—white solid (40-85%).
Step II. Synthesis of Compound C (Py= pyridin-Z-yl)
A mixture of 2,2—dimethyl—N—thiazol—2—yl—propionamide B (10 mmol), chloropyridine (10
mmol), cesium fluoride (20 mmol) and tetrakis(triphenylphosphine)palladium(0) (0.5 mmol) in
dimethyl sulfoxide (20 mL) was heated at 160 °C under an argon here for 16 h. The
resultant mixture was partitioned with 0.5N HCl (150 mL) and CH2C12 (150 mL). The organic
layer was separated, dried over MgSO4, concentrated under reduced pressure and purified by
tography on silica gel (3% acetone 2) to give the d product as a pale brown
solid (20%)
Only one of C was selected to show its NMR spectrum and Mass.
| o
\ s/%NJ\§
N H
2,2-Dimethyl-N-(5-pyridinyl-thiaz01yl)-pr0pi0namide. 1H NMR (400 MHz,
CDC13)25 9.28 (bs, 1H), 8.61 (dd, J: 4.8, 1.6 Hz, 2H), 7.84 (s, 1H), 7.42 (dd, J: 4.8, 1.6 Hz,
2H), 1.38 (s, 9H); MS (ES+) m/z calcd. for C13H15N30S: 261.09; found: 262.1 (M+H+).
Step III. Synthesis of Compound D
A mixture of C (5 mmol ) and 12 N HCl (5 mL) in water (5 mL) was heated to reflux for
2 h. Most of solvent was removed under reduced pressure and the residue was diluted with
CH3OH (15 mL). Most of solvent was removed by distillation and the residue was dried in vacuo
to give D hydrochloride as a pale brown solid.
To a stirred suspension of the above solid in water (30 mL) at room temperature was
adjusted to pH = 7 with sodium bicarbonate and the e was stirred at 50 0C for 2 h. The
itate was collected by filtration and dried in vacuo to give the desired product D as a pale
brown solid (85—90%).
Only one of D was selected to show its NMR spectrum and Mass.
\l S
l /> NH2
-Pyridin-4—yl-thiazol-Z-ylamine. 1H NMR (300 MHz, DMSO—d6): 5 8.41 (dd, J = 4.8,
1.5 Hz, 2H), 7.73 (s, 1H), 7.48 (s, 2H), 7.35 (dd, J = 4.8, 1.5 Hz, 2H); MS (ES+) m/z calcd. for
CgH7N3S: 177.04; found: 178.1 (M+H+).
Step IV. Synthesis of Compound E
To a mixture of D or commercially ble 4—pyridin—3—yl—thiazol-2—ylamine (4 mmol)
and 4,6—dichloro—2—methylpyrimidine (8 mmol) in 1—methyl—2—pyrrolidinone (20 mL) at 0 0C was
added sodium hydride (60% in oil, 10 mmol) and the mixture was stirred at 0 0C under an argon
atmosphere for 1 h. The reaction was quenched with water (100 mL) at 0 OC and was adjusted to
pH = 2 with 6 N HCl. The slurry was adjusted to pH = 7 with sodium onate and the
precipitate was collected by filtration, washed with water (50 mL) and dried in vacuo. The
residue was purified by chromatography on silica gel (20% EtOAc/CHzClz, then 5% to 10%
H2C12 gradient) to give the desired product E as a brown solid (45—60%).
Only one of E was selected to show its NMR spectrum and Mass.
N \
s MCI
1 %NH
(6-Chloro-Z-methyl-pyrimidin-4—yl)-(5-pyridinyl-thiazol-Z-yl)-amine. 1H NMR
(300 MHz, DMSO-d6): 5 12.15 (s, 1H), 8.53 (dd, J: 4.5, 1.5 Hz, 2H), 8.18 (s, 1H), 7.59 (dd, J:
4.5, 1.5 Hz, 2H), 6.90 (s, 1H), 2.59 (s, 3H); MS (ES+)n1/z calcd. for C13H10C1N5S: ;
found: 304.1 (M+H+).
Step V. Synthesis of Compounds 1-4 and 7-13
A mixture of nd E (2 mmol) and l—ethylpiperazine (8 mmol) in dimethyl
sulfoxide (2 mL) was heated at 100 0C for 1 h. After cooling to room temperature, the mixture
was diluted with water (50 mL). The precipitate was collected by filtration, washed with water
(10 mL) and dried in vacuo. The residue was purified by tography on aluminium oxide
(0.5% to 1.5% MeOH/CHgClz gradient) to give freebase of each Compounds 1-4 and 7-13 as an
off—white solid.
To a d 6 N HCl (10 mL) at 0 0C was added the above solid and the solution was
filtered h a 0.45 um PVDF membrane. To the stirred filtrate was added e (40 mL)
dropwise over the course of 1 h and was stirred for an additional 1 h at 0 0C. The precipitate was
collected by filtration, washed with acetone (15 mL) and dried in vacuo to give the HCl salt of
each Compounds 1-4 and 7-13 as a yellow solid (90—95%).
[6—(4—Ethyl-piperazinyl)methyl-pyrimidinyl]-(5-pyridinyl-thiazolyl)-
amine hydrochloride salt (Compound 1). 1H NMR (400 MHz, DMSO—d6): 5 11.55 (bs, 1H),
8.72 (d, J: 5.6 Hz, 2H), 8.61 (s, 1H), 8.14 (d, J: 5.2 Hz, 2H), 6.27 (s, 1H), 4.35 (d, J: 13.2 Hz,
2H), 3.55 (d, J = 12.0 Hz, 2H), 3.45 (t, J: 13.0 Hz, 2H), 3.13 (t, J: 5.8 Hz, 2H), 3.02 (q, J:
.0 Hz, 2H), 2.50 (s, 3H), 1.28 (t, J: 6.8 Hz, 3H); MS (ES+) m/z calcd. for C19H23N7S: 381.17;
found: 382.2 (M+H+).
{6-[4-(2-Fluoro-ethyl)-piperazin-l-yl]methyl-pyrimidinyl}-(5-pyridinyl-
thiazolyl)-amine hydrochloride salt (Compound 2). 1H NMR (300 MHz, DMSO—d6): 5
11.89 (bs, 1H), 8.73 (d, J = 6.3 Hz, 2H), 8.62 (s, 1H), 8.15 (d, J = 5.7 Hz, 2H), 6.26 (s, 1H), 4.95
(d, J = 47.4 Hz, 2H), 4.38 (s, 2H, overlapping with water peak), 3.70-3.35 (m, 6H), 3.18 (bs,
2H), 2.50 (s, 3H); MS (ES+) m/z calcd. for C19H22FN7S: 399.16; found: 400.1 .
2-{4-[2-Methyl(5-pyridinyl-thiazolylamino)-pyrimidinyl]-piperazin-l-yl}-
ethanol hydrochloride salt und 3). 1H NMR (400 MHz, DMSO—d6): 8 11.03 (s, 1H),
8.73 (d, J: 7.2 Hz, 2H), 8.63 (s, 1H), 8.15 (d, J: 7.2 Hz, 2H), 6.26 (s, 1H), 4.34 (d, J = 12.4 Hz,
2H), 3.82 (t, J: 5.2 Hz, 2H), 3.62 (d, J = 12.0 Hz, 2H), 3.43 (t, J: 12.4 Hz, 2H), 3.30-3.09 (m,
4H), 2.49 (s, 3H); MS (ES+) m/z calcd. for C19H23N7OS: 397.17; found: 398.1 (M+H+).
[6-(4-Dimethylamino-piperidinyl)methyl-pyrimidinyl]-(5-pyridinyl-
thiazolyl)-amine hydrochloride salt (Compound 4). 1H NMR (300 MHz, DMSO—d6): 5
11.07 (s, 1H), 8.73 (d, J = 6.9 Hz, 2H), 8.62 (s, 1H), 8.15 (d, J: 6.9 Hz, 2H), 6.25 (s, 1H), 4.43
(d, J: 12.9 Hz, 2H), 3.44 (quin, J: 5.2 Hz, 1H), 2.94 (t, J: 12.5 Hz, 2H), 2.69 (d, J: 4.5 Hz,
6H), 2.49 (s, 3H), 2.15 (d, J: 10.5 Hz, 2H), 1.60 (q, J = 11.0 Hz, 2H); MS (ES+)n1/z calcd. for
C20H25N7S: 395.19; found: 396.1 (M+H+).
[6—(4—Ethyl-piperazinyl)methyl-pyrimidinyl]-(5-pyridinyl-thiazolyl)-
amine hydrochloride salt (Compound 7). 1H NMR (400 MHz, DMSO—d6): 8 11.23 (bs, 1H),
9.15 (s, 1H), 8.68 (d, J: 5.2 Hz, 1H), 8.60 (d, J: 8.0 Hz, 1H), 8.19 (s, 1H), 7.93 (t, J: 6.2 Hz,
1H), 6.21 (s, 1H), 4.35 (d, J = 14.4 Hz, 2H), 3.55 (d, J = 11.6 Hz, 2H), 3.40 (t, J 213.2 Hz, 2H),
3.13 (t, J = 5.8 Hz, 2H), 3.01 (q, J = 6.9 Hz, 2H), 2.50 (s, 3H), 1.28 (t, J = 6.6 Hz, 3H); MS (ES+)
m/z calcd. for C19H23N7S: 381.17; found: 382.2 (M+H+).
{6-[4-(2-Fluoro-ethyl)-piperazin-l-yl]methyl-pyrimidinyl}-(5-pyridinyl-
thiazolyl)-amine hydrochloride salt (Compound 8). 1H NMR (400 MHZ, DMSO-d6): 5
11.80 (bs, 1H), 9.16 (s, 1H), 8.68 (d, J = 5.6 Hz, 1H), 8.62 (d, J = 8.0 Hz, 1H), 8.20 (s, 1H), 7.95
(t, J: 6.8 Hz, 1H), 6.22 (s, 1H), 4.98 (d, J = 46.8 Hz, 2H), 4.34 (bs, 2H), 3.70—3.35 (m, 6H), 3.16
(bs, 2H), 2.49 (s, 3H); MS (ES+) m/z calcd. for FN7S: 399.16; found: 400.1 (M+H+).
2-{4—[2-Methyl(5-pyridinyl-thiazolylamino)-pyrimidinyl]-piperazinyl}-
ethanol hydrochloride salt (Compound 9). 1H NMR (400 MHz, DMSO—d6): 5 11.02 (bs, 1H),
9.18 (s, 1H), 8.69 (s, 1H), 8.64 (d, J: 7.6 Hz, 1H), 8.22 (s, 1H), 7.96 (d, J = 5.2 Hz, 1H), 6.25 (s,
1H), 4.33 (d, J = 11.2 Hz, 2H), 3.80 (s, 1H), 3.60 (d, J: 11.6 Hz, 2H), 3.19 (s, 2H), 3.13 (s, 2H),
2.48 (s, 3H); MS (ES+) m/z calcd. for C19H23N7OS: 397.17; found: 398.1 (M+H+).
[6-(4-Dimethylamino-piperidinyl)methyl-pyrimidinyl]-(5-pyridinyl-
thiazolyl)-amine hydrochloride salt (Compound 10). 1H NMR (400 MHZ, DMSO—d6): 5
11.27 (bs, 1H), 9.18 (s, 1H), 8.69 (d, J = 5.2 Hz, 1H), 8.64 (d, J = 8.0 Hz, 1H), 8.23 (s, 1H), 7.97
(t, J: 6.8 Hz, 1H), 6.36 (bs, 1H), 4.42 (d, J = 8.8 Hz, 2H), 3.43 (bs, 1H), 2.99 (t, J: 12.4 Hz,
2H), 2.68 (s, 3H), 2.67 (s, 3H), 2.55 (s, 3H), 2.17 (d, J: 10.8 Hz, 2H), 1.64 (q, J: 9.2 Hz, 2H);
MS (ES+) m/z calcd. for C20H25N7S: 395.19; found: 396.2 .
[6—(4—Ethyl-piperazinyl)methyl-pyrimidinyl]-(5-pyridinyl-thiazolyl)-
amine hydrochloride salt (Compound 11). 1H NMR (300 MHz, DMSO—d6): 5 11.34 (s, 1H),
8.54 (d, J: 4.8 Hz, 1H), 8.32 (s, 1H), .96 (m, 2H), 7.40—7.34 (m, 1H), 6.31 (s, 1H), 4.37
(d, J = 13.2 Hz, 2H), 3.62—3.38 (m, 4H), .90 (m, 4H), 2.47 (s, 3H), 1.26 (t, J = 7.4 Hz, 3H);
MS (ES+) m/z calcd. for C19H23N7S: 381.17; found: 382.2 (M+H+).
[6—(4—Ethyl-piperazinyl)methyl-pyrimidinyl]-(5-pyrimidin-S-yl-thiazolyl)-
amine hydrochloride salt (Compound 12). 1H NMR (400 MHz, DMSO—d6): 5 11.35 (bs, 1H),
9.20-9.03 (m, 3H), 8.09 (s, 1H), 6.28 (s, 1H), 4.40 (s, 2H), 3.56 (d, J = 12.4 Hz, 2H), 3.44 (d, J:
7.4 Hz, 2H), 3.13 (bs, 2H), 3.02 (d, J: 8.0 Hz, 2H), 1.28 (bs, 3H); MS (ES+) m/z calcd. for
ClgszNgSI 382.17; found: 383.3 (M+H+).
[6-(4—Ethyl-piperazinyl)methyl-pyrimidinyl]-(4-pyridinyl-thiazolyl)-
amine hydrochloride salt (Compound 13). 1H NMR (400 MHz, DMSO—d6): 8 11.80 (bs, 1H),
11.54 (bs, 1H), 9.28 (s, 1H), 8.94 (d, J = 8.4 Hz, 1H), 8.84 (d, J = 5.2 Hz, 1H), 8.15—8.07 (m,
2H), 6.31 (bs, 2H), 4.35 (d, J: 14.0 Hz, 2H), 3.55 (d, J = 12.0 Hz, 2H), 3.45 (t, J = 13.0 Hz,
2H), 3.15-3.07 (m, 2H), 3.00 (q, J = 10.0 Hz, 2H), 2.49 (s, 3H), 1.27 (t, J = 7.4 Hz, 3H); MS
(ES+) m/z calcd. for C19H23N7S: 381.17; found: 382.1 (M+H+).
Step V. Synthesis of Compounds 5 and 6
To a mixture of Compound E (1 mmol) and ydroxyethy1)—morpholine (4 mmol) in
diglyme (1 mL) at 100 0C was added potassium hydroxide (10 mmol) and the mixture was
stirred at 160 0C under an argon atmosphere for 10 min. The reaction was quenched with water
(20 mL) at 0 OC and was adjusted to pH = 2 with 6 N HCl. The slurry was adjusted to pH = 7
with sodium bicarbonate and the precipitate was collected by tion, washed with water
(10 mL) and dried in vacuo. The residue was purified by chromatography on aluminium oxide
(0.5% to 1.5% MeOH/CH2C12 gradient) to give freebase of Compound 6 as an off—white solid.
To a suspension of the above solid in MeOH (10 mL) at 0 0C was added 6 N HCl (1 mL)
with stirring. Most of solvent was removed under reduced pressure and the residue was treated
with EtOH (10 mL). The itate was collected by filtration, washed with acetone (10 mL)
and dried in vacuo to give the HCl salt of each compounds 5-6 as a yellow solid (45—50%).
[2-Methyl(2-morpholinyl-ethoxy)-pyrimidinyl]-(5-pyridinyl-thiazolyl)-
amine hydrochloride salt (Compound 5). 1H NMR (400 MHz, DMSO—d6): 5 11.61 (s, 1H),
8.74 (d, J: 5.2 Hz, 2H), 8.64 (s, 1H), 8.17 (d, J: 5.2 Hz, 2H), 6.37 (s, 1H), 4.72 (s, 2H), 4.00-
3.80 (m, 4H), 3.64—3.42 (m, 4H), 3.16 (bs, 2H), 2.59 (s, 3H); MS (ES+) m/z calcd. for
N6OZS: 398.15; found: 399.2 (M+H+).
[2-Methyl(2-morpholinyl-ethoxy)-pyrimidinyl]-(5-pyridinyl-thiazolyl)-
amine hydrochloride salt (Compound 6). 1H NMR (400 MHz, DMSO—d6): 5 11.51 (bs, 1H),
9.20 (s, 1H), 8.71 (d, J = 5.6 Hz, 1H), 8.66 (d, J: 8.4 Hz, 1H), 8.24 (s, 1H), 7.98 (dd, J = 8.0,
.6 Hz, 1H), 6.35 (s, 1H), 4.72 (t, J = 4.8 Hz, 2H), 3.96 (d, J = 10.8 Hz, 2H), 3.85 (t, J = 12.0 Hz,
2H), 3.55 (bs, 2H), 3.47 (d, J = 12.4 Hz, 2H), 3.19 (bs, 2H), 2.59 (s, 3H); MS (ES+) m/z calcd.
for N602S: 398.15; found: 399.1 (M+H+).
EXAMPLE 2: Inhibiting FLT3 activity
A study was carried out as s to test certain compounds prepared according to
EXAMPLE 1 in inhibiting FLT3 ty.
GST-FLT3—KDWT containing the FLT3 kinase catalytic domain (residues Y567—S993)
was sed in Sf9 insect cells transfected the baculovirus containing pBac—PAKS—GST—FLT3—
KD plasmid. An FLT3WT Kinase—Glo assay was carried out in l plates at 30 °C for 4 hrs
to test compound in a final volume of 50 ul including the following components: 75 ng GST-
FLT3-KDWT proteins, 25 mM HEPES, pH 7.4, 4 mM MnClz, 10 mM MgC12, 2 mM DTT, 0.02%
Triton X—100, 0.1 mg/ml bovine serum n, 25 uM Her2 peptide ate, 0.5 mM ,
and 1 uM ATP. ing incubation, 50 Ml Kinase—Glo Plus Reagent (Promega, Madison, WI,
USA) was added to each well and the mixture was incubated at 25 °C for 20 min. A 70—uL
aliquot of each reaction mixture was transferred to a black microtiter plate and the luminescence
was measured on Wallac Vector 1420 multilabel counter (PerkinElmer, Shelton, CT, USA).
Multiple compounds were tested. Unexpectedly, Compounds 1-33 showed IC50 (the
concentration of an inhibitor where the response is reduced by half) values lower than 100 nM.
EXAMPLE 3: Inhibiting VEGFR2 activity
A study was carried out as follows to test certain compounds prepared according to
EXAMPLE 1 in inhibiting VEGFR2 activity. Note that VEGFR2 is one of the three main
subtypes of VEGFR.
The recombinant GST—VEGFR2 (residues V789—V1356) containing kinase domain was
expressed in Sf9 insect cells. The kinase assay was d out in 96—well plates with tested
compound in a final volume of 50 pl reaction at 30°C for 120 s with following
ents: 25 mM HEPES pH 7.4, 10 mM MgC12, 4 mM MnClz, 0.5 mM Na3VO4, 2 mM
DTT, 0.02% Triton X100, 0.01% BSA, 1 HM ATP, 2 uM polyGlu4zTyr peptide, 50~100 ng
recombinant VEGFR2. Following incubation, 50 Ml Kinase—Glo Plus Reagent (Promega,
Madison, WI, USA) was added to each well and the mixture was incubated at 25 °C for 20 min.
A 70—ML aliquot of each reaction mixture was transferred to a black microtiter plate and the
luminescence was measured on Wallac Vector 1420 multilabel counter (PerkinElmer, Shelton,
CT, USA).
le compounds were tested in the VEGFR2 assay. nds 1, 9 and 10
unexpectedly showed IC50 values lower than 30 nM.
EXAMPLE 4: ting c—Kit activity
A study was carried out as follows to test certain compounds prepared ing to
EXAMPLE 1 in inhibiting c—Kit activity.
The inal His-tagged human c-KIT (residues T544-V976) recombinant proteins,
sed in Sf9 baculovirus—insect cell expression systems, were purified for c—KIT ADP
Kinase—Glo assay. A c—Kit—ADP Kinase—Glo assay was carried out in 96—well plates at 30 °C for
150 mins with a final volume of 10 ul, including 40 mM Tris pH 7.4, 20 mM MgC12, 2 mM
MnClz, 2 mM DTT, 0.01% BSA, 20 uM ATP, 20 uM poly(Glu,Tyr) 4:1 peptide, 0.1 mM
Na3VO4, 250 ng of recombinant c-Kit proteins, and a tested compound at the indicated
concentration. The reactions were stopped by the addition of 5 ul ADP—GloTM t
(Promega, Madison, WI, USA) at 25 °C with 40 min incubation, followed by 10 ul of kinase
detection reagent for a further 30 min. Finally, a 30 ul aliquot of each reaction mixture was
transferred to a black microtiter plate and the luminescence was measured on Wallac Vector
1420 multilabel counter (Perkin-Elmer, Shelton, CT, USA).
Multiple compounds were tested. Unexpectedly, Compounds 1-7 and 11-12 showed IC50
values lower than 100 nM.
EXAMPLE 5: In vitro anticancer activity
A study was carried out as follows to evaluate in vitro anticancer activity of certain
nds ed according to EXAMPLE 1 using cell lines and MTS cell Viability assays
(MTS represents 3—(4,5—dimethylthiazol—2-yl)—5—(3-carboxymethoxyphenyl)—2-(4—sulfophenyl)-
2H—tetrazolium).
Leukemia cell lines MOLM—13, MV4:11, and Kasumin-l were sed from American
Type Culture Collection (ATCC, Manassas, VA, USA). The human gastrointestinal stromal
tumor GIST-T1 cell line was purchased from Cosmo Bio Co., LTD (Tokyo, Japan). All
leukemia cell lines were maintained in RPMI 1640 medium supplemented with 10% fetal bovine
serum (FBS), 10 U/ml penicillin, and 10 g/ml streptomycin at 37°C and 5% C02. The cell line
1 was cultured in DMEM medium supplemented with 10% FBS, 0.01% nonessential
amino acids, 10 U/ml penicillin, and 10 g/ml streptomycin.
GIST882, GIST48 and GIST430 cells were all cultured in incubators maintained at 37 °C
and 5% C02. GIST882 was cultured in RPMI—1640 mented with 20% fetal bovine serum
(FBS). GIST48 was cultured with F10 supplemented with 20% FBS, 0.5% Mito, serum extender
(BD Bioscience, 355006) and 1% pituitary extract bovine (BD Bioscience 354123). 0
was cultured in IMDM supplemented with 20% FBS. GIST882, GIST430 and GIST48 cells
were provided by Dr. Jonathan A. Fletcher (Harvard l School, US).
MOLM—I3, MV4:]1, and Kasumin-I MTS assays
Cells were seeded in 96-well culture plates at a density of 1><104 cells/100 ul/well in
triplicates and were treated for 72 hours with an indicated concentration of test compound
ranging from 1 nM to 10 uM. Colorimetric CellTiter 96® Aqueous One Solution Cell
Proliferation assay (MTS assay; Promega, n, WI, USA) was used to determine the
cytotoxicity. The l density at 492 nm was measured using a late photometer
(Victor2; Perkin-Elmer, m, MA, USA). IC50 values were determined by MTS assay when
cells were treated with test compound for 72 hours and calculated with GraphPad Prism 6. Each
experiment was in triplicate.
GIST—T] MTS assay
GIST—T1 cells were seeded in l culture plates at a density of 8000 cells/100 l
in triplicates and were treated for 72 hours with an indicated concentration of test compound
ranging from 1 nM to 10 uM. Colorimetric CellTiter 96® Aqueous One Solution Cell
Proliferation assay (MTS assay; Promega, n, WI, USA) was used to determine the
cytotoxicity. The optical density at 492 nm was measured using a microplate photometer
(Victor2; —Elmer, Waltham, MA, USA). IC50 values were determined by MTS assay when
cells were treated with test compound for 72 hours and calculated with GraphPad Prism 6. Each
experiment was in triplicate.
GIST882, GIST48, and GIST430 MTS assays
GIST cells (4 X 104) were treated with different dosage of compounds. The treated
GIST882 cells were incubated for 144 hours and GIST48 and GIST430 cells were incubated for
120 hours at 37°C in 5% C02. Cell proliferation was determined by incubating the cells with
methylene blue ech, CA, US) for 1 hour. The ance was measured at 450 nm using
SpectraMax M5 microplate reader (Molecular Devices, US).
The GI50 (the concentration for 50% of maximal inhibition of cell eration) values of
certain compounds of Formula (I) are shown in the table below:
GI50 (nM)
Compound
MOLM-13 MV4:11 Kasumi-1 GIST-T1 GIST430 GIST48 GIST882
1 10 13 11 11 3.8 19 5.0
7 62 34 266 53 60 820 20
12 211 132 349 119 ND ND ND
ND, not determined.
OTHER EMBODIMENTS
All of the features disclosed in this specification may be combined in any combination.
Each feature disclosed in this specification may be replaced by an alternative feature serving the
same, equivalent, or similar purpose. Thus, unless expressly stated otherwise, each feature
disclosed is only an example of a generic series of equivalent or similar features.
From the above description, one d in the art can easily ascertain the essential
characteristics of the present invention, and without departing from the spirit and scope thereof,
can make various changes and modifications of the invention to adapt it to various usages and
conditions. Thus, other embodiments are also within the scope of the following claims.
Throughout this ication, unless otherwise ted, "comprise," "comprises," and
"comprising," (and variants thereof) or related terms such as "includes" (and variants thereof),
are used inclusively rather than exclusively, so that a stated integer or group of integers may
include one or more other non-stated integers or groups of integers.
Throughout this ication, nce to any advantages, promises, objects or the like
should not be regarded as cumulative, composite, and/or tive, and should be regarded as
preferable or desirable rather than stated as a warranty.
Claims (27)
1. A compound of formula (I) below or a pharmaceutically acceptable salt thereof: (I), wherein R1 is C1-6 alkyl or C1-6 kyl; X is O or NRa, in which Ra is H or C1-6 alkyl; Y is CRbRc or NRd, in which each of Rb and Rc, independently, is H, halo, C1-6 alkyl, C1-6 alkoxyl, or amino, or Rb, together with Ra, the carbon atom bonded to Rb, and the nitrogen atom bonded to Ra, is C3-10 heterocycloalkyl; and Rd is H or C1-6 alkyl, or Rd, together with Ra and the nitrogen atoms bonded to Rd and Ra, is C3-10 heterocycloalkyl; R2 is –CH2CH2Re or NRfRg, in which Re is H, halo, C1-6 alkyl, or ORh and each of Rf and Rg, independently, is C1-6 alkyl or C3-8 cycloalkyl, Rh being H or C1-6 alkyl, or Rh, together with Rd, the oxygen atom bonded to Rh, and the nitrogen atom bonded to Rd, being C3-10 cycloalkyl; and R3 is 6-membered heteroaryl.
2. The compound or salt of claim 1, wherein the compound is of formula (II): (II), in which R1 is C1-6 alkyl.
3. The compound or salt of claim 2, wherein X is O, Y is NRd, and R2 is – Re, in which Re is ORh, Rh, er with Rd, the oxygen atom bonded to Rh, and the nitrogen atom bonded to Rd, being C3-10 heterocycloalkyl.
4. The compound or salt of claim 2, wherein X is NRa and Y is CRbRc or NRd, in which Ra, together with Rb, the nitrogen atom bonded to Ra, and the carbon atom bonded to Rb, is C3-10 heterocycloalkyl; Rc is H, halo, C1-6 alkyl, C1-6 alkoxyl, or amino; and Rd, together with Ra and the nitrogen atoms bonded to Ra and Rd, is C3-10 heterocycloalkyl.
5. The compound or salt of claim 4, wherein X is NRa, Y is CRbRc, and R2 is NRfRg, in which Ra, together with Rb, the nitrogen atom bonded to Ra, and the carbon atom bonded to Rb, is C3-10 heterocycloalkyl; Rc is H, halo, C1-6 alkyl, C1-6 alkoxyl, or amino; and each of Rf and Rg is C1-6 alkyl.
6. The compound or salt of claim 4, wherein X is NRa, Y is NRd, and R2 is – CH2CH2Re, in which Ra, together with Rd and the nitrogen atoms bonded to Ra and Rd, is C3-10 heterocycloalkyl; and Re is H, halo, or ORh, Rh being H or C1-6 alkyl.
7. The compound or salt of claim 1, wherein R3 is 6-membered heteroaryl substituted with one or more (CH2)nZ moieties independently, in which n is 0 or 1 and Z is H, halo, CN, OH, CF3, C1-6 alkyl, or C1-6 alkoxyl; or is 6-membered heteroaryl fused with a phenyl ring substituted with one or more substituents independently ed from the group consisting of H, halo, CN, OH, CF3, C1-6 alkyl, and C1-6 l.
8. The compound or salt of claim 7, wherein R3 is 6-membered heteroaryl substituted with one or more (CH2)nZ moieties independently, in which n is 0 or 1 and Z is H, halo, CN, OH, CF3, C1-6 alkyl, or C1-6 alkoxyl.
9. The nd or salt of claim 8, wherein R3 is pyridyl or pyrimidyl.
10. The compound or salt of claim 3, n R3 is 6-membered heteroaryl substituted with one or more (CH2)nZ moieties independently, in which n is 0 or 1 and Z is H, halo, CN, OH, CF3, C1-6 alkyl, or C1-6 alkoxyl; or is 6-membered heteroaryl fused with a phenyl ring substituted with one or more substituents independently selected from the group ting of H, halo, CN, OH, CF3, C1-6 alkyl, and C1-6 alkoxyl.
11. The compound or salt of claim 10, wherein R3 is pyridyl or pyrimidyl.
12. The compound or salt of claim 11, wherein the compound is
13. The compound or salt of claim 5, wherein R3 is 6-membered heteroaryl substituted with one or more (CH2)nZ moieties independently, in which n is 0 or 1 and Z is H, halo, CN, OH, CF3, C1-6 alkyl, or C1-6 alkoxyl; or is 6-membered aryl fused with a phenyl ring substituted with one or more substituents independently selected from the group consisting of H, halo, CN, OH, CF3, C1-6 alkyl, and C1-6 alkoxyl.
14. The compound or salt of claim 13, wherein R3 is pyridyl or pyrimidyl.
15. The compound or salt of claim 14, wherein the compound is
16. The compound or salt of claim 6, wherein R3 is 6-membered heteroaryl substituted with one or more (CH2)nZ moieties independently, in which n is 0 or 1 and Z is H, halo, CN, OH, CF3, C1-6 alkyl, or C1-6 alkoxyl; or is 6-membered heteroaryl fused with a phenyl ring substituted with one or more substituents independently selected from the group ting of H, halo, CN, OH, CF3, C1-6 alkyl, and C1-6 alkoxyl.
17. The compound or salt of claim 16, wherein R3 is pyridyl or pyrimidyl.
18. The nd or salt of claim 17, wherein the compound is one of the following compounds:
19. The compound or salt of claim 1, wherein the compound is one of the ing compounds:
20. The compound or salt of claim 1, n the compound is of formula (III): (III), in which R1 is C1-6 alkyl.
21. A pharmaceutical composition comprising a pharmaceutically acceptable r and a nd or salt according to any one of claims 1 to 20.
22. Use of a compound or salt according to any one of claims 1 to 20, or a pharmaceutical composition according to claim 21, in the manufacture of a medicament for treating a cancer associated with a ne kinase.
23. A compound or salt according to any one of claims 1 to 20 or a pharmaceutical composition according to claim 21 for use in inhibiting a tyrosine kinase.
24. A nd or salt according to any one of claims 1 to 20 or a ceutical composition according to claim 21 for use in the treatment of a cancer associated with a tyrosine kinase.
25. The use of claim 22, or the nd of claim 23 or claim 24, wherein the tyrosine kinase is FMS-like tyrosine kinase 3 (FLT3), FMS-like tyrosine kinase 4, vascular endothelial growth factor receptor (VEGFR), colony stimulating factor 1 receptor (CSF1R), platelet-derived growth factor receptor (PDGFR) A, PDGFR B, tyrosine-protein kinase Kit (c-KIT), c-Src (SRC), tyrosine-protein kinase Lyn (LYN) A, LYN B, rearranged during transfection tyrosine kinase (RET), lymphocyte-specific protein tyrosine kinase, Gardner-Rasheed feline sarcoma viral oncogene homolog, discoidin domain receptor 1, kinase insert domain receptor, B lymphocyte , tyrosine-protein kinase Yes, Abelson murine leukemia viral oncogene homolog 1 , tyrosine receptor kinase TRKA, TRKB, TRKC, ZAK/MLTK, IRAK4, RET V804L, RET Y791F, FLT3 D835Y, PDGFR A V561D, or ABL1 T315I.
26. The use of claim 25, or the compound of claim 25, wherein the tyrosine kinase is FLT3, VEGFR, or c-KIT.
27. The use according to any one of claims 22, 25, or 26, or the compound according to any one of claims 23 to 26, wherein the cancer is acute myeloid leukemia, chloroma, chronic myelogenous leukemia, acute lymphoblastic leukemia, chronic lymphocytic leukemia, Hodgkin’s disease, non-Hodgkin’s ma, B-cell lymphoma, multiple myeloma, Waldenstrom’s macroglobulinemia, myelodysplastic syndrome, pancreatic cancer, bladder cancer, colorectal cancer, breast , male genital tract cancer, renal cancer, hepatocellular cancer, lung , ovarian cancer, cervical cancer, uterus cancer, gestational trophoblastic disease, gastric cancer, bile duct cancer, gallbladder cancer, small intestine cancer, geal cancer, oropharyngeal cancer, hypopharyngeal cancer, eye cancer, nerve cancer, head and neck cancer, melanoma, plasmacytoma, endocrine gland neoplasm, ndocrine cancer, brain tumor, bone cancer, or sarcoma.
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201762518855P | 2017-06-13 | 2017-06-13 | |
US62/518,855 | 2017-06-13 | ||
PCT/US2018/037221 WO2018231910A1 (en) | 2017-06-13 | 2018-06-13 | Aminothiazole compounds as protein kinase inhibitors |
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NZ759327A NZ759327A (en) | 2021-08-27 |
NZ759327B2 true NZ759327B2 (en) | 2021-11-30 |
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