NZ743308B - Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists - Google Patents
Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonistsInfo
- Publication number
- NZ743308B NZ743308B NZ743308A NZ74330816A NZ743308B NZ 743308 B NZ743308 B NZ 743308B NZ 743308 A NZ743308 A NZ 743308A NZ 74330816 A NZ74330816 A NZ 74330816A NZ 743308 B NZ743308 B NZ 743308B
- Authority
- NZ
- New Zealand
- Prior art keywords
- compound
- disease
- disorder
- use according
- amino
- Prior art date
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- C07D233/04—Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings having one double bond between ring members or between a ring member and a non-ring member
- C07D233/28—Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings having one double bond between ring members or between a ring member and a non-ring member with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
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- C07D239/06—Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having one double bond between ring members or between a ring member and a non-ring member
- C07D239/08—Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having one double bond between ring members or between a ring member and a non-ring member with hetero atoms directly attached in position 2
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- C07D239/24—Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members
- C07D239/28—Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to ring carbon atoms
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- C07D401/04—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring-member bond
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- C07D401/12—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
Abstract
The present disclosure provides pharmaceutical agents of the formula (I): wherein the variables are defined herein. Also provided are pharmaceutical compositions, kits and articles of manufacture comprising such pharmaceutical agents. Methods of using the pharmaceutical agents for the treatment of a variety of diseases and disorders are also provided, for example the biological activity of the compounds such as integrin receptor antagonists and for example, the disease or disorder is associated with fibrosis and/or angiogenesis. a variety of diseases and disorders are also provided, for example the biological activity of the compounds such as integrin receptor antagonists and for example, the disease or disorder is associated with fibrosis and/or angiogenesis.
Description
META-AZACYCLIC AMINO BENZOIC ACID DERIVATIVES
AS PAN INTEGRIN ANTAGONISTS
DESCRIPTION
This application claims benefit of priority to US. Serial No. 62/273,246, filed
December 30, 2015, the entire contents of which are hereby incorporated by reference.
BACKGROUND
1. Field of the Invention
The present disclosure relates to the fields of pharmaceuticals, medicine and cell
biology. More specifically, it relates to ceutical agents (compounds) which are useful
as integrin receptor antagonists, with biological activity as antagonists of one or more
ins that mediate the pathologic processes of enesis and fibrosis. As such, these
nds may be used are useful in pharmaceutical compositions and in methods for
treating diseases and disorders, including conditions mediated by one or more of such
integrins.
11. Description of Related Art
Integrins are a family of integral cytoplasmic membrane proteins that mediate cell
interactions with other cells and with the extracellular matrix. Approximately one third of the
members of the integrin family directly bind to a specific amino acid motif, arginine-glycine-
aspartate (RGD), that is contained within the sequence of their cognate protein ligands. It has
been established in the art that peptides containing the RGD sequence, and synthetic small
molecule compounds that mimic the RGD sequence, are capable of binding to these integrin
receptors with varying degrees of specificity, and thereby inhibit the binding to normal
physiologic ligands (Millard, 2011, Sun et al., 2014). The ical effects of treatment
with such agents is dependent on intrinsic molecular ties, reflected in the structure, that
determine to what degree a particular in, or ation of ins, is inhibited in a
body tissue over a period of time.
Many human diseases are characterized by either or both of two common contributing
pathological mechanisms: angiogenesis and s. Different subsets of the RGD-binding
integrins have predominant roles in driving these dual processes, so that simultaneous
antagonism of angiogenesis and fibrosis requires agents capable of binding potently to
several target integrins. This contrasts with agents designed cally for binding to a
2016/069511
single integrin which may be less effective in some applications due to their more restricted
mechanism of action.
ins which have been shown to have a role in promoting angiogenesis include
0tv[33, ochS, and OLSBI. 0tv[33 and ochS were initially described as mediators of bFGF- and
VEGF-induced angiogenesis, respectively, in corneal or choriallantoic models. Subsequent
data from studies using mice lacking these integrins also support an ant onal role
for OLSBI. The integrin OLSBI (also known as VLA-S) is often referred to as the ‘classic
fibronectin receptor’ ing its well characterized interaction with this ellular matrix
protein. Cells expressing OLSBI bind to fibronectin in a region that incorporates the ninth and
tenth type III fibronectin repeats, the latter of which contains the RGD motif critical for
integrin binding. In addition to ectin, OLSBI has been reported to interact with other
RGD-containing extracellular matrix proteins including ogen, denatured collagen, and
fibrillin-l (Bax et al., 2003, Perdih, 2010, o et al., 2000). These ligands are
components of the provisional matrix that is laid down by cells as part of the wound healing
response in tissues. Key ents of this response are angiogenesis (new blood vessel
formation) and fibrosis (scar formation) which are beneficial for healing of acute injuries, but
can be deleterious in many disease contexts.
Antagonists of RGD-binding integrins should be useful for ent of human
diseases having angiogenesis or fibrosis as a principal part of their pathology. In particular,
the important role of OLSBI in angiogenesis is supported by numerous studies. For example,
mice lacking this integrin exhibit embryonic lethality at day 10-11 with a phenotype that
includes defects in both the nic and extraembryonic vasculature (Yang et al., 1993).
Angiogenic cytokines such as bFGF, IL-8, TGFB, and TNFoc upregulate OLSBI expression on
endothelial cells in vitro and in vivo, and immunohistochemistry shows nated increases
in both OLSBI and fibronectin staining in blood vessels from various types of human tumor
biopsies and xenograft tumors in animals (Collo, 1999, Kim et al., 2000). Monoclonal
antibodies that specifically inhibit OLSBI, and nds that have been described as OLSBI
inhibitors, significantly reduce angiogenesis in a number of experimental models (Kim et al.,
2000, Bhaskar et al., 2007, Livant et al., 2000, Zahn et al., 2009).
Because OLSBI expression is not confined to the endothelium, it has other functional
roles in addition to angiogenesis. It is expressed to varying degrees in many cell types
including fibroblasts, hematopoietic and immune cells, smooth muscle cells, epithelial cells,
and tumor cells. Expression on tumor cells has been implicated in the progression of tumor
growth and metastasis (Adachi et 61].; 2000; Blase’ et 61].; 1995; Danen et al.; 1994; Edward;
1995). In human fibroblasts; oc5[31 promotes motility and survival (Lobert et 61].; 2010). In
pancreatic stellate cells; it cts with connective tissue growth factor to stimulate
adhesion; migration; and fibrogenesis (Gao and Brigstock; 2006). It has been shown that
pharmacologic antagonism of oc5l31 ts the ment migration; and proliferation of
human retinal epithelial cells in vitro; and reduces retinal cell eration and scarring when
administered intravitreally to rabbits with retinal detachment (Li et al.; 2009; Zahn et 61].;
2010)
Besides a5[31; another RGD-binding integrin of the beta-1 family that is lated
after organ injury is 0L8l31. Studies have shown that this integrin is co-eXpressed with markers
of tissue myofibroblasts; the principal cellular ors of fibrosis (Levine et al.; 2000;
Bouzeghrane et al.; 2004). Ectopic expression of a8l31 conferred to cells increased ing
and adhesion on latent TGFB, a major pro-fibrotic cytokine; in a manner that was RGD-
dependent (Lu et 61].; 2002).
RGD-binding integrins of the alpha v family have been implicated in ing the
biological activation of the latent pro-fibrotic cytokine TGFB. This is mediated by binding to
the y associated peptide (LAP); particularly by ocvl36 and ; but also by ochl;
OMB, and ocvl35. Furthermore; the alpha v integrins mediate attachment; migration;
eration and other functions in diverse cell types associated with the wound repair
process. This onal redundancy; differential cellular expression; and the known fibrosis
phenotypes of integrin knockout mice; all suggest that a highly potent antagonist of this entire
subset may be particularly useful for therapeutic development. To achieve TGFB activation;
these integrins are all critically dependent upon the amino acid sequence arg-gly-asp (RGD)
contained in LAP. Indeed; mice containing a mutation in the RGD sequence of LAP are
incapable of TGFB activation and recapitulate the phenotype of TGFB-null mice. Genetic
on of the expression of alpha v integrins specifically from myofibroblasts in mice
conferred protection against the development of fibrosis in several models of organ injury;
and this efficacy was similarly provided by continuous infusion ent with a small
molecule integrin antagonist of RGD-binding integrins known as CWHM-12 (Henderson 62‘
611.; 2013). Such studies support the concept that simultaneous inhibition of le integrins
may have particular utility to prevent or treat a range of fibrotic ions.
The multi-integrin receptor antagonist compounds previously described in the art
generally lack either demonstrated broad spectrum potency against all of the RGD integrins
described above, or the pharmacokinetic properties suitable for sustained activity with oral
dosing, or both. Long plasma half-life at therapeutically significant concentrations following
oral administration is a highly desirable property for development of drug formulations for
al ents, allowing convenient administration usually without need for medical
supervision.
SUMMARY
The present disclosure provides novel integrin or antagonists, pharmaceutical
compositions thereof, methods of manufacture thereof, and methods for their use.
In some aspects, the present disclosure provides compounds of the formula:
N\ NH
Y O
\ N
| HAWN B CO2R'
/ O
X Y (I),
wherein:
A is C—H, C—OH, or N,
R’ is hydrogen, alkyl(c:3), substituted alkyl(cs8), or a tuent tible in vivo to
hydrogen, and
X and Y are each independently cyano, halo, fluoroalkoxy(c1—2), alkyl(c1—2), or
fluoroalkyl(c1.2), with the proviso that X and Y are not both cyano or
alkyl(c1—2);
or a pharmaceutically able salt or tautomer of the above formula.
In some embodiments, the compound is further defined as:
N\ NH
HN N l3
\ N CO R'
I/ HAD“ 2
X Y (I),
wherein:
A is C—OH or N,
R’ is hydrogen, alkyl(c:3), substituted alkyl(c:3), or a substituent convertible in vivo to
hydrogen, and
X and Y are each independently cyano, halo, lkoxy(c1—2), alkyl(c1—2), or
fluoroalkyl(c1.2), with the proviso that X and Y are not both cyano or alkyl(c1-
or a pharmaceutically acceptable salt or tautomer of the above formula.
In some embodiments, A is N. In other embodiments, A is C—OH. In some
embodiments, R' is hydrogen.
In some embodiments, X is halo such as —F, —C1, or —Br. In some embodiments, X is
—F. In other embodiments, X is —Cl. In other embodiments, X is —Br. In other
embodiments, X is fluoroalkoxy(c1-2) such as —OCF3. In other embodiments, X is
fluoroalkyl(c1-2). In some embodiments, X is —CHF2. In other embodiments, X is —CF3. In
other embodiments, X is alkyl(c1.2) such as —CH3.
In some ments, Y is halo such as —F, —C1, or —Br. In some embodiments, Y is
—F. In other embodiments, Y is —Cl. In other ments, Y is —Br. In other
embodiments, Y is fluoroalkoxy(c1-2) such as —OCF3. In other ments, Y is
fluoroalkyl(c1—2). In some embodiments, Y is —CHF2. In other embodiments, Y is —CF3. In
other embodiments, Y is alkyl(c1.2) such as —CH3.
In some embodiments, X and Y are each independently selected from the groups
consisting of F, Cl, Br, OCF3, CH3, CHF2, and —CF3, with the proviso that X and Y
are not both —CH3.
In some embodiments, the carbon atom labeled B is in the S configuration. In some
ments, the compounds are further defined as:
OH OH
©HOHO N\NH
HN N/\n’NEOE :sz YD»?HN COzH
WO 17538
HO; HO;
N\ NH N\ NH
”/7; COZH ”/7; COZH
OH OH
Cl CF2H Br CF2H
HO; HO:
N\ NH
HI N\ NH
n Y O
HN N
N0? 00 H2 my
OH OH
0' CFs Cl Br
, 3
HO; HO;
N\ NH
H\Nr N\ NH
H Y O
\ HN N
| ”W COZH \
| NW COZH
N N
CI CF3 Cl Br
, 3
HO: HO;
N\ NH N\ NH
| H/\fl/ COZH ”W COZH
/ O O
Br CF3 F30 CF3
HO; HO;
N\ NH N\ NH
”Ag COZH ”Ag COZH
0H 0H
H30 Br H3O CI
KO; HO;
N\ NH
Y ON/\[O]/N:3 £:OZH :NflkmN\NH HN ZI
COZH
Br Br
N\NH
N N/\n/NCOOEHE::IOZH YfiwHN COZH
F3CO CI
N\ NH
”W COZH
F300 Br
or a pharmaceutically acceptable salt or tautomer of any of the above formulas.
In some embodiments, the compounds are effective for inhibiting three or more RGD
ins selected from the group consisting of (1531, (val, (1831, (va3, (vaS, (va6, and
(va8, wherein the effectiveness of the compound corresponds to an ICso value of less than
nM for each of the three or more RGD integrins as measured using a solid phase or
assay (SPRA) for function of the respective integrin.
In some embodiments, the compounds possess pharmacokinetic properties that allow
eutically significant plasma trations to be achieved and/or sustained in a patient
for two or more hours after oral administration. In some embodiments, the compounds have
a sustained plasma half-life of at least two hours as measured in a rat using an iv. bolus
comprising 1 mg of compound per kg of rat.
In yet another aspect, the present sure provides pharmaceutical compositions
comprising:
a) a compound described herein, and
2016/069511
b) an excipient.
In still yet another aspect, the t disclosure es methods of treating and/or
preventing a disease or a disorder in a patient in need thereof, comprising administering to the
patient a compound or composition bed herein in an amount sufficient to treat and/or
prevent the disease or disorder.
In some embodiments, the disease or disorder is associated with angiogenesis. In
other embodiments, the e or disorder is associated with fibrosis. In some embodiments,
the disease or disorder is associated with fibrosis and/or angiogenesis.
In some embodiments, the disease or disorder is pulmonary, liver, renal, cardiac, and
pancreatic fibrosis, scleroderma, scarring, pathy of prematurity, familial exudative
vitreoretinopathy, proliferative vitreoretinopathies, macular degeneration, diabetic
retinopathy, cancer, osteoporosis, autoimmune diseases, humoral hypercalcemia of
malignancy, Paget’s disease, periodontal disease, psoriasis, arthritis, restenosis, and infection.
In some ments, the disease or disorder is pulmonary fibrosis. In other embodiments,
the disease or disorder is liver s. In other embodiments, the disease or disorder is
cardiac fibrosis. In other ments, the disease or disorder is renal fibrosis. In other
embodiments, the disease or disorder is pancreatic fibrosis.
In other embodiments, the disease or disorder is scleroderma. In other embodiments,
the e or disorder is scarring. In some embodiments, the scarring is dermal scarring. In
other embodiments, the scarring is retinal scarring. In other embodiments, the scarring is
corneal scarring.
In other embodiments, the disease or disorder is retinopathy of prematurity. In other
ments, the disease or disorder is al exudative vitreoretinopathy. In other
ments, the disease or disorder is proliferative vitreoretinopathies. In other
embodiments, the e or disorder is macular degeneration. In other embodiments, the
disease or disorder is diabetic retinopathy.
In other embodiments, the disease or disorder is cancer. In some embodiments, the
cancer includes solid tumor growth or neoplasia. In some embodiments, the cancer includes
tumor metathesis. In some embodiments, the cancer is of the bladder, blood, bone, brain,
breast, central nervous system, cervix, colon, endometrium, esophagus, gall bladder,
lia, genitourinary tract, head, kidney, larynx, liver, lung, muscle tissue, neck, oral or
nasal mucosa, ovary, pancreas, te, skin, , small intestine, large intestine, stomach,
testicle, or thyroid. In some embodiments, the cancer is a carcinoma, sarcoma, ma,
leukemia, melanoma, mesothelioma, le myeloma, or seminoma.
In other embodiments, the disease or disorder is osteoporosis. In other embodiments,
the disease or disorder is an mune disease. In some embodiments, the autoimmune
disorder is multiple sis. In other embodiments, the disease or disorder is humoral
hypercalcemia of malignancy. In other embodiments, the disease or disorder is Paget’s
disease. In other embodiments, the e or disorder is periodontal e. In other
embodiments, the disease or disorder is psoriasis. In other embodiments, the disease or
disorder is arthritis. In some embodiments, the arthritis is rheumatoid arthritis. In other
embodiments, the disease or er is restenosis. In other embodiments, the disease or
disorder is an infection.
In some embodiments, the patient is a human, monkey, cow, horse, sheep, goat, dog,
cat, mouse, rat, guinea pig, or transgenic species thereof. In some embodiments, the patient
is a monkey, cow, horse, sheep, goat, dog, cat, mouse, rat, or guinea pig. In some
embodiments, the patient is a human.
In some aspects, the present disclosure contemplates the fact that the bond between
the phenyl ring and the amino acid backbone on the B-amino acid is freely rotating. As such,
in some aspects, it is contemplated that the structure may rotate such that the X group is on
the oriented s the backbone and the Y is oriented away form the backbone as well as
the manner drawn in most commonly in the specification showing the X group on the
ed towards the backbone and the Y oriented away from the backbone as shown in the
structures below. The structure:
N\ NH
is equivalent to the structure:
2016/069511
given the free rotation of the bond g the carbon label B in the backbone and the carbon
labeled 1 in the aromatic ring.
Other objects, features and advantages of the present disclosure will become apparent
from the following detailed description. It should be understood, however, that the detailed
ption and the specific examples, while indicating specific embodiments of the
disclosure, are given by way of ration only, since various changes and modifications
within the spirit and scope of the disclosure will become apparent to those skilled in the art
from this detailed description. Note that simply because a particular compound is ascribed to
one particular generic formula doesn’t mean that it cannot also belong to another generic
formula.
BRIEF DESCRIPTION OF THE DRAWINGS
The following drawings form part of the present cation and are included to
further demonstrate certain s of the present disclosure. The disclosure may be better
understood by reference to one or more of these drawings in combination with the detailed
description of specific embodiments presented herein.
— Dot plots comparing potency of comparison nds (comparators) and
es shown in Tables 1A & B for each integrin. Horizontal lines indicate group means.
Statistical analysis was performed using a two-tailed standard T test for comparison of group
means.
DESCRIPTION OF ILLUSTRATIVE EMBODIMENTS
Disclosed herein are new compounds and compositions with integrin receptor
antagonists properties, s for their manufacture, and methods for their use, including
for the ent and/or prevention of disease.
1. Compounds and tic s
The compounds provided by the present disclosure may be made using the methods
outlined below and further described in the Examples section. Comparison compounds
shown in Table l and listed in Tables 3-5 were sized as disclosed in the literature.
Additionally, these ison compounds may also be readily synthesized by ing the
methods and procedures described herein by those skilled in the art. General synthetic
sequences for preparing the compounds useful in the present disclosure are outlined in
Schemes I-VIII. Both an explanation of, and the actual procedures for, the various aspects of
the present sure are described where appropriate. The following Schemes and
Examples are ed to be merely illustrative of the present disclosure, and not limiting
thereof in either scope or spirit. Those with skill in the art will readily understand that known
variations of the conditions and processes described in the Schemes and Examples can be
used to synthesize the compounds of the present disclosure. Starting materials and equipment
employed were either commercially available prepared by methods previously reported and
readily duplicated by those d in the art.
SchemeI
H N2 (:0 H
\ 2 NH4SCN,HCI,H20 H
| H2N\n/N COZH
A |
A s A/
l Mel
NH2 NH2 “Y“YYSMe COZH
w /
HN COZH A
|\ 1.DMAorDMF
A A
2. dilute HCI
Scheme I illustrates general methodology which may be used for preparing the cyclic
guanidine substituted left hand side aromatic acid portion of Formula I of the present
disclosure which can then be coupled to a Gly-B-amino acid ester, or to Gly ester first,
followed by (after ester hydrolysis) coupling to the appropriate B-amino acid ester. ,
in Scheme 1, the appropriate amino benzoic (or pyridine) acid is reacted with ammonium
anate in hot dilute hydrochloric to give the resulting 3-thiourea benzoic (or pyridine)
acid after normal work-up. The starting amino benzoic (or pyridine) acids are either
commercially available or can be converted to such amino benzoic (or pyridine) acids via
reduction of the corresponding nitro benzoic (or pyridine) acid, which can be ed
commercially or synthesized by nitration of the appropriate benzoic (or pyridine) acid,
followed by reduction to the desired amino c (or pyridine) acid, or by other reported
methodologies that are known to those skilled in the art. This thiourea intermediate is
converted to the S-methyl derivative by reaction with methyl iodide in ethanol at reflux. The
appropriate 1,3-diaminohydroxy propane is d with this resulting intermediate in hot
DMA (or DMF). Upon g, a precipitate forms and the zwitterionic product is isolated
by tion. The HCl salt may be obtained by lyophilizing from dilute hydrochloric acid.
Alternatively, the product may be ed from the original reaction mixture by removing
volatiles and concentrating. The resulting product is taken up in water and pH adjusted to
about 5-7 where zwitterionic product precipitates and is isolated by filtration. The HCl salt
may be ed as previously stated or by simply dissolving in dilute hydrochloric acid and
concentrating to a solid and drying.
Scheme 11
HO COzH HZNOCOZH
1. NH4OH, NH4CI, 180 deg. c
OH 2. 37% HCI, reflux OH
MeNcs, DMF, 25 deg. c N 002“
—> s
RH OH
NYNH 1' HE
NH NH M HN9 N 00 H2
2 2
HN COZH Y/
* HI
2 90 deg C
3. H20
4. HCI
Scheme 11 illustrates methodology which may be used for preparing the
ydropyrimidinobenzoic acid portion of Formula I of the present disclosure which can
then be coupled to a amino acid ester, or to Gly ester first, followed by (after ester
hydrolysis) coupling to the appropriate B-amino acid ester. Briefly, in Scheme 11, 3,5-
dihydroxybenzoic acid is converted to 3-aminohydroxy-benzoic acid using the procedure
described in Austr. J. Chem. 1981 or Becker et al., 1983. The product is d with methyl
isothiocyanate in DMF at room temperature (Organic Process Research & Development,
2004) to give 3-N-methyl thioureahydroxybenzoic acid after normal work-up. This
thiourea intermediate is converted to the S-methyl derivative by reaction with methyl iodide
neat at below 40 °C. l,3-diaminohydroxypropane is reacted with this resulting
intermediate in hot DMA (or DMF). Upon cooling, a precipitate forms and the zwitterionic
product is isolated by filtration. The HCl salt may be obtained by lyophilizing from dilute
hydrochloric acid. atively, the product may be isolated from the al reaction
mixture by removing volatiles and concentrating. The resulting product is taken up in water
and pH adjusted to about 5-7 where zwitterionic product itates and is isolated by
filtration. The HCl salt may be obtained as previously stated or by simply dissolving in dilute
hydrochloric acid and concentrating to a solid and drying.
Scheme III
0 1. malonic acid, ammonium acetate HZN
x Y isopropyl l * HCI
A x Y
2. EtOH / HCI
resolve
COzEt COZEt
HZN HZN 1,.
X Y x Y
Scheme III illustrates a general methodology which may be used for the synthesis of
the beta amino acid ester portion of Formula I of the present disclosure, starting from an
riate benzaldehyde. This beta amino acid ester can then be coupled to Boc-Glycine
followed by (after removal of the Boc protecting group) ng to the appropriate ic
acid described in Schemes I and II, or to the ic acid that has been coupled to e.
Briefly in Scheme III, to the appropriate benzaldehyde in isopropanol is added ammonium
acetate followed by malonic acid. The reaction mixture is stirred at reflux, the resulting
precipitate filtered and washed with hot isopropanol and dried to yield the desired racemic
beta amino acid. The ethyl ester is synthesized by heating this acid in excess ethanol in the
presence of excess HCl gas. These racemic beta amino acid esters can be resolved into the
(R) and the (S) omers via chiral chromatographic separation, or via enzymatic
resolution as described in Faulconbridge et al., 2000 or Landis et al., 2002, which are
incorporated herein by reference. In some embodiments, the (S) enantiomer is the preferred
enantiomer of the B-amino acid group.
Scheme IV
>L i O
HZN O >l\ N
o/ 0
HCI / EtOH
dioxane
COZEt
H2N/\n/ N
* HCI
x Y
Scheme IV illustrates a general methodology which may be used for preparing the
ethyl-N-Gly-beta amino acid n of Formula I of the present sure, which can be
coupled to the ic acid portion of Formula I described in Schemes I and II. This
method describes coupling a beta amino acid ester to Glycine. Briefly, the desired beta amino
acid ester (described in Scheme 111 above) is treated with activated Boc Glycine. l of
the Boc protective group (by treatment with ethanol/HCl, for example) affords the Glycine
amide of the corresponding beta amino acid ester (the (S) enantiomer is afforded by utilizing
the (S)—beta amino acid ester, described in the above scheme).
Scheme V
OH OH
1. IBCF, NMM, DMA;
(or DIC, HOBt, DMF/DCM) RH
NYNH N\ NH
HN HN N
(jCOZH \
2. NMM, | NW
A/ O
COZEt A/
HZN/\n’ N x Y
0 *HCI
1. LI+OH (or NaOH), H20
x Y
2.H,H20
N NH
Y o COZH
HN N
\ N
I/ 0?
x Y
Scheme V illustrates a general ology which may be used for preparing various
compounds of the present disclosure. Briefly, the cyclic guanidine substituted left hand side
ic acid portion of Formula I (described in Schemes I and II) is activated for coupling
using known methods. Thus, after dissolving in a suitable solvent such as DMA an
equivalent of NMM is added. The reaction mixture is cooled to ice-bath temperatures and
IBCF added. To the mixed anhydride intermediate is added the Gly-B-amino acid ester
(described in Scheme IV) and NMM. Upon completion of the reaction the product is purified
by preparative HPLC and the ester hydrolyzed to the acid by treating with a base, such as
LiOH in a suitable solvent (dioxane/water or acetonitrile/water). Alternatively, a suitable
acid, such as TFA can be used. The product is ed by preparative HPLC or by isolating
the zwitterion at pH 5-7 and converting to the desired salt by standard ures. (The (S)
enantiomer is afforded by utilizing the (S) — beta amino acid ester, bed in the above
schemes).
Scheme VI
NYNH 1. IBCF, NMM, DMA; RH
(or Die, HOBt, DMF/DCM) NYNH
HN COZH o COZEt
: H
HN N
2 NMM' ”/1:
OH ’
COZEt
H OH
N x Y
Hzmr
0 * HCI
x Y
1. LiOH (or NaOH), H20
2. w, H20
NYNH
o COZH
HN MWN
x Y
Scheme VI illustrates a general methodology that may be used for preparing various
compounds of the present disclosure. Briefly, 3-Hydroxy[(l,4,5,6-tetrahydrohydroxy-
2-py1imidinyl)amino]benzoic acid ibed in Scheme 11) is activated for ng using
known s. Thus, after dissolving in a suitable solvent such as DMA an equivalent of
NMM is added. The reaction mixture is cooled to ice-bath atures and IBCF added. To
the mixed anhydride intermediate is added the Gly-B-amino acid ester (described in Scheme
IV) and NMM. Upon completion of the reaction the product is purified by preparative HPLC
and the ester hydrolyzed to the acid by treating with a base, such as LiOH in a suitable
solvent (dioxane/water or acetonitrile/water). Alternatively, a suitable acid, such as TFA can
be used. The product is isolated by preparative HPLC or by isolating the zwitterion at pH 5-7
and converting to the desired salt by standard procedures. (The (S) omer is afforded by
utilizing the (S) — beta amino acid ester, described in the above schemes).
WO 17538
SchemeVII
(O; 1. IBCF, NMM, DMA; H}
‘or DIC, HOBt, NMM, DMA’ N\YNH
N\ N“
Y HN OH
ethyl ate HCI, \
HN NW \ COZH I
/ o
| 2. NaOH, H20 A
A 3. H+, H20
COZEt
1. IBCF, NMM, DMA;
(or DIC, HOBt, NMM, DMA) * HCI
X Y
NYNH
o COZEt
HN N
\ N
/ U?
x Y
1. LiOH (or NaOH), H20
2. H”, H20
NYNH
o COZH
HN N
|\ N
/ O
x Y
Scheme VII illustrates a general methodology that may be used for preparing s
compounds of the present disclosure. Briefly, the cyclic guanidine substituted left hand side
aromatic acid portion of Formula I (described for example in Schemes I and II) is activated
for coupling using known methods. Thus, after dissolving in a suitable t such as DMA
an equivalent ofNMM is added. The reaction mixture is cooled to ice-bath temperatures and
IBCF added. To the mixed anhydride intermediate is added ethyl glycinate HCl and NMM.
Upon completion of the reaction the product is purified by preparative HPLC and the ester
hydrolyzed to the acid by treating with a base, such as NaOH in a suitable solvent (water,
dioxane/water or acetonitrile/water), followed by acidification. This Gly adduct is then
activated for coupling using known methods. Thus, after dissolving in a suitable solvent such
as DMA an equivalent of NMM is added. The reaction mixture is cooled to ice-bath
atures and IBCF added. To the mixed ide intermediate is added the appropriate
beta amino acid ester salt (described in Scheme 111 above) and NMM. Upon completion of
the reaction the product is purified by ative HPLC and the ester hydrolyzed to the acid
by treating with a base, such as LiOH in a suitable solvent (dioxane/water or
acetonitrile/water). Alternatively, a suitable acid, such as TFA can be used. The t is
isolated by preparative HPLC or by isolating the zwitterion at pH 5-7 and converting to the
desired salt by standard procedures (the (S) enantiomer is afforded by utilizing the (S) — beta
amino acid ester, described in the above schemes).
Scheme VIII
HO; 1. IBCF, NMM, DMA; H}
‘or DIC, HOBt, NMM, DMA’ NvNH
NYNH HN
ethy 9yI I cinate HCI
HN N/\n/OH
COZH H
2. NaOH, H20
3. H+, H20 OH
COZEt
1. IBCF, NMM, DMA;
(or DIC, HOBt, NMM, DMA) * HCI
X Y
NYNH
o COZEt
HN ufirN
x Y
1. LiOH (or NaOH), H20
2. H”, H20
NYNH
o COZH
HN MWN
x Y
Scheme VIII illustrates a general methodology which may be useful for preparing
various compounds of described herein. Briefly, 3-Hydroxy[(1,4,5,6-tetrahydro
ypyrimidinyl)amino]benzoic acid (described in Scheme 11) is activated for coupling
using known methods. Thus, after dissolving in a suitable solvent such as DMA, an
lent of NMM is added. The reaction e is cooled to ice-bath temperatures and
IBCF added. To the mixed anhydride intermediate is added ethyl glycinate HCl and NMM.
Upon completion of the reaction the product is purified by preparative HPLC and the ester
hydrolyzed to the acid by ng with a base, such as NaOH in a suitable t ,
dioxane/water or acetonitrile/water), followed by acidification. This Gly adduct is then
activated for coupling using known methods. Thus, after dissolving in a suitable solvent such
as DMA an equivalent of NMM is added. The reaction mixture is cooled to ice-bath
temperatures and IBCF added. To the mixed anhydride intermediate is added the appropriate
beta amino acid ester salt (described in Scheme 111 above) and NMM. Upon completion of
the reaction the product is purified by prep hplc and the ester hydrolyzed to the acid by
treating with a base, such as LiOH in a suitable t (dioxane/water or acetonitrile/water).
Alternatively, a suitable acid, such as TFA can be used. The product is isolated by
preparative HPLC or by isolating the zwitterion at pH 5-7 and converting to the desired salt
by standard procedures (the (S) enantiomer is afforded by ing the (S) — beta amino acid
ester, described in the above schemes).
In some embodiments, the compounds of the present disclosure are those described in
Table 1A (below), the es, and the claims.
Table 1A: Example Compounds of the Present Disclosure
Example Number Compound Structure
N\ NH
1 HI n
”W COZH
Br Br
N\ NH
2 HI H
”W COZH
Br CF3
e Number Compound Structure
N NH
Y 0
3 HN ”/71;N COZH
CI CFZH
NYNH
4 HN ”/1?N COZH
Br CFZH
NYNH
HN ”/1?N COZH
CI CF3
N NH
Y 0
HN ”/71; N COZH
Cl Br
YNH 0
7 HN N
\ H/YN 00 H
| 2
/ o
CI CF3
WO 17538
Example Number Compound Structure
NYNH
8 HN N
\ N COH
I 2
/ HT
Cl Br
N NH
Y 0
9 HN N
\ N COH
I H/Y 2
/ o
Br CF3
N NH
Y 0
HN ”/71;N COZH
F30 CF3
NYNH
11 HN ”11/N COZH
H3O Br
YNH O
12 HN ”/11:N COZH
H30 CI
2016/069511
Example Number Com ound Structurep
N\ NH
13 HI n
”W COZH
F Br
N\ NH
14 HI n
\ Q?N 00 H
I 2
Br Br
N\ NH
HI n
”W COZH
CI CI
N\ NH
16 IDN/ H
”/11: COZH
F300 CI
N\ NH
17 HI H
”W COZH
F300 Br
Table 1B: Comparison Compounds
Comparison Number nd Structure
N NH
\Y 0
C1 HN NWN COZH
O OH
Cl Br
N NH
Y 0
C2 H
HN ”/71;N COZH
N NH
NW COZH
O OH
CI CI
HN NH
C4 OM:
H30 CH3
HN NH
Y 2 0
HN(2%:N
ison Number Compound Structure
N NH
Y 0
C6 HN ”WN COZH
O OH
N NH
Y 0
C7 HN NWN COZH
O OH
Br Br
HN NH2
Y o
HN N/\n/N COZH
C8 H
O OH
YNH2 0
HN N/\n/N CO H2
C9 H
F30 F
NYNH
C10 HN N \\
N -‘ \COZH
O OH
Cl CH3
NYNH
HN N H
C11 m "\002H
0 OH
Cl CH3
ison Number Compound Structure
N NH
Y 0
C12 HN ”/7;N COZH
NYNH
C13 HN ”WN COZH
0 OH
C14 HO:
N NH
Y 0
HN NWN COZH
0 OH
C15 HO:
NYNH
HN ”/7;N COZH
Comparison Number nd Structure
C16 HO;
N NH
Y 0
HN ”AgN COZH
C17 HN NH
YNH 0
fin:H HN N
C19 HO;
N NH
Y 0
HN ”/7;N COZH
C20 #0;
NYNH
HN ”/71; N COZH
ison Number Compound Structure
C21 HO;
HN ”/7;N COZH
C22 HO:
N NH
\Y 0
HN ”/71;N COZH
C23 (a
”W o
HN ”/71; N COZH
C24 HO;
N\ NH
”W COZH
OH OH
Comparison Number nd Structure
C25 HO;
N NH
Y 0
HN ”/7;N COZH
C26 KO;
NYNH
HN ”/7;N COZH
C27 HO;
NYNH
HN ”/7;N COZH
OH OH
C28 HO:
N NH
Y 0
HN ”/71;N COZH
CF2H
Comparison Number Compound Structure
C29 (0;
N \ NH
”W COZH
C30 OH
N:NrNH o
”W COZH
0H NH2
All these methods described above can be further modified and optimized using the
principles and techniques taught in US. Patents 6,013,651 and 223, which are
incorporated herein by reference, as well as the ples and techniques of organic
chemistry as applied by a person skilled in the art. Such principles and techniques are taught,
for example, in March ’s Advanced Organic try: Reactions, Mechanisms, and
Structure (2007), which is incorporated by nce herein.
Compounds employed in methods of the disclosure i'nay cei'itain one or mere
asyniinetricelly—suhstilined C'irlioii er nitrogen atoms, and may be ed in optically active
or receiiiii: forhi. Thus, all chiral, tliastereonieric, raceiriic form, epiineric form, and all
geonieti'ic isomeric forms of a structure an: intended, unless the specific slereeeheinistiy or
isomeric twin is specifically indicated. In some embodiments, the B-amino acid portion of
formula I is in the (5) ration. In some embodiments, the (S) omer is the
preferred enantiomer of the B-amino acid group. Compounds may occur as i'aceinates and
raeeniic i'nizx‘iiires. single eiiaiitieinei's. diaslereeineric es and dual dieslei'eeinei‘s.
in some eniliotliifneiits, a single diastereeiner is ij-lj‘taiiied. "the chiral centers cf the
compounds of the present disclosure can have the S or the R configuration, as defined by the
lUl’AC N74 RGCOU'li‘Tlei‘lilmilOHS. For example. i'nixtnres of stereolseinei's may be separated
using the techniques taught in the. Emittiples section helow, as well its modifications theirenf.
eric forms are also ed as well as pharmaceutically acceptable salts of such
isomers and tautomers.
Atoms making up the compounds of the present disclosure are intended to include all
isotopic forms of such atoms. Compounds of the present disclosure include those with one or
more atoms that have been ically modified or enriched, in particular those with
ceutically acceptable isotopes or those useful for pharmaceutically research. Isotopes,
as used herein, include those atoms having the same atomic number but different mass
numbers. By way of general example and without limitation, isotopes of en include
ium and tritium, and isotopes of carbon include 13C and 14C. Similarly, it is
contemplated that one or more carbon atom(s) of a compound of the present disclosure may
be replaced by a silicon atom(s). Furthermore, it is contemplated that one or more oxygen
atom(s) of a compound of the present disclosure may be replaced by a sulfur or selenium
atom(s).
Cenrpounds of the present disclosure may atse exist in prodrug fenn. Since prodrugs
are known to enhance ntinten‘itis desirable qualities of pharmaceuticals teg, setubitity.
bitmvaiiahiiity, manufacturing, ete}, tl' e (LOU'tpOt/ttidil. ei'npteyed in sente t'netheds of the
disclosure may, if desired, be. detivered in predrug form. Thus, the disclosure contemplates
predmgs ef cenipounds of the present disclosure as well as methods of delivering prodrugs,
Predrtigs Of the commends ed in the disclosure may be prepared by modifying
functional groups present in the compound in such a. way that the medifieations are cleaved,
either in e manipulation or in viva, tn the parent compound. Accordingly, prodrugs
include, for example, compounds described herein in which a hydroxy, amino, or y
group is bonded to any group that, when the prodrug is administered to a subject, cleaves to
form a hydroxy, amino, or carboxylic acid, respectively.
it slinuld he recognize-:1 that the particular aninii or cation forming a part ef any salt of
this sure is net al, se long as the salt, as a whole, is pharntneoiegicaliy acceptable.
Additiena} examples of eeuticatty acceptable salts and their methods of preparatien
and use are presented in ok of Pharmaceutical Salts: Properties, and Use (2002),
which is ineerporated herein by reference.
It should be further recognized that the compounds of the t disclosure include
those that have been further modified to comprise substituents that are convertible to
hydrogen in vivo. This includes those groups that may be convertible to a hydrogen atom by
enzymological or chemical means including, but not d to, hydrolysis and
hydrogenolysis. Examples include hydrolyzable groups, such as acyl groups, groups having
an oxycarbonyl group, amino acid residues, peptide residues, 0-nitrophenylsulfenyl,
trimethylsilyl, tetrahydropyranyl, diphenylphosphinyl, and the like. Examples of acyl groups
include formyl, acetyl, trifluoroacetyl, and the like. es of groups having an
oxycarbonyl group include carbonyl, tert—butoxycarbonyl (—C(O)OC(CH3)3, Boc),
benzyloxycarbonyl, p-methoxybenzyloxycarbonyl, vinyloxycarbonyl, B-(p-
toluenesulfonyl)ethoxycarbonyl, and the like. Suitable amino acid residues include, but are
not limited to, residues of Gly (glycine), Ala (alanine), Arg ine), Asn (asparagine), Asp
(aspartic acid), Cys (cysteine), Glu mic acid), His (histidine), Ile (isoleucine), Leu
(leucine), Lys (lysine), Met (methionine), Phe lalanine), Pro (proline), Ser (serine),
Thr (threonine), Trp (tryptophan), Tyr (tyrosine), Val (valine), Nva (norvaline), Hse
(homoserine), 4-Hyp (4-hydroxyproline), 5-Hyl (5-hydroxylysine), Om (omithine) and B-
Ala. Examples of suitable amino acid es also include amino acid es that are
protected with a protecting group. Examples of suitable protecting groups include those
typically employed in peptide synthesis, including acyl groups (such as formyl and acetyl),
arylmethoxycarbonyl groups (such as benzyloxycarbonyl and p-nitrobenzyloxycarbonyl),
tert—butoxycarbonyl groups (—C(O)OC(CH3)3, Boc), and the like. Suitable peptide es
e peptide residues comprising two to five amino acid residues. The residues of these
amino acids or es can be present in stereochemical configurations of the D-form, the L-
form or mixtures thereof. In addition, the amino acid or peptide residue may have an
asymmetric carbon atom. Examples of suitable amino acid residues having an asymmetric
carbon atom include residues of Ala, Leu, Phe, Trp, Nva, Val, Met, Ser, Lys, Thr and Tyr.
Peptide residues having an asymmetric carbon atom include peptide residues having one or
more constituent amino acid residues having an asymmetric carbon atom. Examples of
suitable amino acid protecting groups include those typically employed in peptide synthesis,
including acyl groups (such as formyl and acetyl), arylmethoxycarbonyl groups (such as
benzyloxycarbonyl and p-nitrobenzyloxycarbonyl), tert—butoxycarbonyl groups
(—C(O)OC(CH3)3), and the like. Other examples of substituents “convertible to hydrogen in
viva” e reductively eliminable hydrogenolyzable groups. Examples of suitable
reductively eliminable enolyzable groups include, but are not limited to, arylsulfonyl
groups (such as 0-toluenesulfonyl), methyl groups substituted with phenyl or benzyloxy
(such as benzyl, trityl and benzyloxymethyl), thoxycarbonyl groups (such as
benzyloxycarbonyl and o-methoxy-benzyloxycarbonyl), and hoxycarbonyl groups
(such as B,B,B-trichloroethoxycarbonyl and B-iodoethoxycarbonyl).
Compounds of the disclosure may also have the advantage that they may be more
efficacious than, be less toxic than, be longer acting than, be more potent than, produce fewer
side effects than, be more easily absorbed than, and/or have a better pharmacokinetic profile
(e.g., higher oral ilability and/or lower clearance) than, and/or have other useful
pharmacological, physical, or chemical properties over, compounds known in the prior art,
whether for use in the indications stated herein or otherwise.
11. Biological Activity
In some embodiments, the compounds of the present disclosure may be used to
antagonize multiple RGD-binding integrins. In some of these embodiments, the compounds
may be used to treat or prevent diseases in which more than one in promotes aberrant
angiogenesis. For example, the compounds may be especially useful when a second disease
process, which is either co-dependent or independent of angiogenesis, is mediated by RGD
integrins that can be simultaneously affected with the anti-angiogenic antagonist. Tumors are
known to be dependent on the formation of new blood vessels to sustain growth beyond a few
millimeters in er. Aberrant angiogenesis in the retina is a teristic of many
blinding disorders such as wet age-related macular degeneration, vitreoretinopathies,
retinopathy of prematurity, and diabetic retinopathy. Angiogenesis has been associated with
progression of pulmonary and liver fibrosis, and with growth of the synovial pannus in
toid arthritis.
The integrins 0tv[33 and ochS have been ated in promoting angiogenesis
(Avraamides et al., 2008), so that their antagonism in addition to other integrins may be
predicted to provide superior blockade of this process. Integrin ocvl33 is also known to play a
role in tumor cell metastasis, and in the elevated bone resorption associated with osteoporosis
and some cancers. The antagonists of the disclosure possess varying activity against at least
five integrins that have been reported to bind the latent cytokine TGFB complex in vitro:
ochl, och3, ochS, ocv[36, and ocvl38. See (Asano et al., 2005, Mu et al., 2002, Munger et al.,
1999, Wipff et al., 2007, and Munger et al., 1998), which are incorporated herein by
reference. TGFB is ntly co-expressed with the enic cytokine VEGF and induces
its synthesis (Ferrari 62‘ al., 2006). Aside from having vascular regulatory ty, TGFB is a
powerful r of fibrosis in many tissues such as lung, liver, kidney, and skin mura,
2009). Virtually all TGFB is secreted from cells in a complex which contains the y
associated peptide (LAP). The integrins ocvl33, ochS, and , interact with the RGD motif
2016/069511
contained within LAP, producing a conformational change in the complex which allows
TGFB to bind cellular receptors that activate pro-fibrotic pathways. Integrin ocvl38 also
activates TGFB in an RGD-dependent manner, but utilizes a protease-dependent mechanism
distinct from the other integrins.
Latent TGFB is ubiquitously present in tissues, and is ted by integrins in a
spatially and temporally restricted manner. ore, upregulation of the epithelial integrin
0tv[36 in the lungs or liver may promote zed collagen deposition and scarring, as has
been observed in patients with idiopathic pulmonary fibrosis (Horan et al., 2008) or hepatic
s (Popov et al., 2008). Similarly, ochS, and to a lesser extent , are present on
mesenchymal cells and are able to activate hymal TGFB (Wipff et al., 2007, Scotton
et al., 2009). Integrin 0tv[38 is expressed on subsets of epithelial, neural, immune, and
mesenchymal cell types. In the skin, the TGFB activation that accompanies the wound
healing process mediates matrix deposition and promotes the formation of scars. Compounds
of the present disclosure, by virtue of their ability to simultaneously inhibit several TGFB-
activating integrins, have the potential for greater efficacy in treatment of is than
previously described compounds having more restricted tory profiles. Furthermore, the
compounds provided herein, including, for example, those which have good OLSBI potency,
may be used to treat and/or prevent diseases characterized by both aberrant angiogenic and
fibrotic ogies.
TGFB is an important inducer of the formation of FoxP3+ regulatory T cells (Treg)
(Yoshimura, 2011). In some embodiments, compounds of the present disclosure, including
those that inhibit the activation of TGFB and/or reduce Treg activity may be used to relieve
immune suppression in disease states such as cancer, when administered alone or in
combination with existing therapies. Mitigation of Treg activity with such compounds also
has the potential to enhance the activity of vaccines which are intended to prevent or treat
cancer and infectious diseases. TGFB, in the ce of IL-6, es the conversion of
naive T cells to TH17 cells mura, 2011). These cells promote a variety of autoimmune
diseases. It has been reported that mice lacking all ocvl38 sion on dendritic cells have
near complete protection from experimental autoimmune encephalitis, a model of multiple
sclerosis (Melton et al., 2010). Therefore, compounds of the present disclosure, including
those that inhibit the activation of TGFB and/or reduce Th17 activity, and be used in
preventing or treating mune disease when administered alone or in combination with
existing therapies.
Antagonism of the integrin ocIIbB3 (also known as the fibrinogen receptor), is known
to block platelet aggregation as part of the blood coagulation process. Hence, to avoid
increased bleeding when treating conditions or disease states mediated by integrin OLSBI and
other integrins, it would be beneficial to utilize compounds which selectively spare OLIIbB3.
As discussed above, integrins are a family of integral cytoplasmic membrane proteins
that mediate cell interactions with other cells and with the extracellular matrix (ECM). These
proteins also play a role in cell signaling and thereby regulate cellular shape, motility, and the
cell cycle. Not only do integrins perform “outside-in” signaling typical of receptors, but they
also operate an e-out” mode. Thus, they transduce information from the ECM to the
cell as well as reveal the status of the cell to the outside, allowing rapid and flexible responses
to changes in the environment, for example to allow blood coagulation by platelets.
There are many types of integrin, and many cells have multiple types on their surface.
Integrins are of vital importance to all animals and have been found in all animals
igated, from sponges to mammals. As such compounds which target ins have
found us uses in different animals including companion animals, ock s,
200 animals as well as wild animals. ins have been extensively studied in humans.
Integrins work alongside other proteins such as cadherins, immunoglobulin superfamily cell
adhesion molecules, selectins and syndecans to mediate cell—cell and cell—matrix ction
and communication. ins bind cell surface and ECM ents such as fibronectin,
vitronectin, collagen, and laminin.
Each integrin is formed by the non-covalent heterodimerization of alpha and beta
glycoprotein subunits, the combination of which conveys distinct biological activities such as
cell attachment, ion, proliferation, differentiation, and survival. Currently, 24 integrins
have been described in mammals that are formed by pairing of 18 0t subunits and 8 B
subunits, as set out in Table 2.
Table 2: Integrins
ITGA4 CD49d VLA4 Alpha
ITGAS CD49e VLAS Alpha
ITGA6 CD49f VLA6 Alpha
ITGAl 0 ITGAl 0 Alpha
ITGAL CD1 la LFAlA Alpha
In addition, variants of some of the ts are formed by differential splicing; for
e, four variants of the beta-1 subunit exist. Through different combinations of these or
and B subunits, some 24 unique integrins are generated, gh the number varies according
to different studies.
III. Therapeutic Methods
The present disclosure relates to the fields of pharmaceuticals, medicine and cell
biology. More specifically, it relates to pharmaceutical agents (compounds) and
pharmaceutical compositions thereof which may be used as integrin receptor antagonists,
including in some embodiments, integrin receptor antagonists. As such, these
compounds may be used in pharmaceutical compositions and in methods for treating
conditions mediated by one or more of such integrins, for e, by inhibiting or
antagonizing one or more of these integrins. In several aspects of the present sure, the
compounds provided herein may be used in a variety of biological, prophylactic or
2016/069511
therapeutic areas, including those one or more the (15b1, a8Bl, ochl, ocvl33, ochS, avb6, and
avb8 integrins plays a role.
In another aspect, this sure provides methods of inhibiting or nizing one
or more of the OLSBI, oc8[31, ochl, ocv[33, ochS, ocv[36 and ocv[38 integrins using one or more
of the compounds disclosed herein, as well as pharmaceutical compositions thereof. In some
embodiments, these methods inhibit pathological conditions associated therewith, such as
angiogenesis, including tumor angiogenesis, fibrosis and ic diseases, such as
pulmonary, renal, cardiac, muscle, and liver fibrosis, scarring, such as retinal, corneal and
dermal scarring, retinopathy, including diabetic retinopathy and macular degeneration,
vitreoretinopathy, including pathy of prematurity (ROP) and familial exudative
vitreoretinopathy (FEVR), osteoporosis, humoral hypercalcemia of malignancy, Paget’s
disease, tumor metastasis, solid tumor growth (neoplasia), arthritis, including rheumatoid
arthritis, periodontal disease, psoriasis, smooth muscle cell migration and restenosis,
autoimmune disease, such as multiple sclerosis, and infectious pathogens by administering a
eutically effective amount of a compound provided herein. In some embodiments, the
compound is administered as part of a pharmaceutical composition further comprising a
pharmaceutically acceptable carrier. In some embodiments, the compounds and/or
pharmaceutical compositions thereof may be administered orally, parenterally, or by
tion spray, or topically in unit dosage formulations containing conventional
pharmaceutically acceptable carriers, adjuvants and vehicles. The term parenteral as used
herein includes, for example, subcutaneous, intravenous, intramuscular, intrastemal, on
ques or intraperitoneally. In some embodiments, the compounds of the present
disclosure are administered by any suitable route in the form of a ceutical composition
adapted to such a route, and in a dose effective for the treatment intended. Therapeutically
effective doses of the compounds required to prevent or arrest the ss of or to treat a
medical ion are readily ained by one of ordinary skill in the art using preclinical
and clinical approaches familiar to the medicinal arts.
Based upon standard tory experimental techniques and procedures well known
and appreciated by those skilled in the art, as well as comparisons with compounds of known
usefulness, the compounds described above can be used in the treatment of ts suffering
from the above pathological conditions. One skilled in the art will recognize that ion of
the most riate compound of the disclosure is within the ability of one with ordinary
skill in the art and will depend on a variety of s including assessment of results obtained
in standard assay and animal models.
In another , the compounds provided herein may be used in a variety of
biological, prophylactic or therapeutic areas, ing those in wherein one or more the
(15b1, a8Bl, ochl, ocv[33, ochS, avb6, and avb8 ins play a role. The disclosure further
es treating or inhibiting ogical conditions associated therewith such as
angiogenesis, including tumor angiogenesis, fibrosis and fibrotic diseases such as ary
fibrosis, renal, cardiac, muscle, and liver fibrosis, scleroderma, scarring, such as retinal,
corneal and dermal scarring, retinopathy, including diabetic retinopathy and macular
degeneration, vitreoretinopathy, including retinopathy of prematurity (ROP) and al
exudative vitreoretinopathy (FEVR), osteoporosis, humoral hypercalcemia of malignancy,
s disease, tumor metastasis, solid tumor growth (neoplasia), arthritis, including
rheumatoid arthritis, periodontal disease, psoriasis, smooth muscle cell migration and
restenosis in a mammal in need of such treatment. Additionally, such pharmaceutical agents
are useful as antiviral agents, and antimicrobials. Further, such pharmaceutical agents are
useful as immune system modulators via inhibition of TGF-B activation resulting from
inhibiting or antagonizing the targeted integrins. Such immune modulation s the
immune activity and functions of T regulatory and T effector cells, and as such can be useful
in the treatment of immune related pathologies, including autoimmune diseases such as
multiple sclerosis, as well as in the treatment of tumors and infectious pathogens.
IV. Pharmaceutical ations and Routes of Administration
It is another object of the disclosure to provide pharmaceutical compositions
comprising one or more of the compounds described herein. Such compositions are useful in
inhibiting or antagonizing integrins, including, for examples, (XSBI, oc8[31, ochl, ocv[33,
ocv[36, and ocv[38 integrins. In some embodiments, this disclosure es pharmaceutical
itions comprising a compound that is ive in inhibiting or antagonizing one or
more of the OLSBI, , ochl, , ochS, ocvl36 and ocv[38 integrins using one or more of
the compounds disclosed herein, as well as pharmaceutical compositions thereof. In some of
these ments, such pharmaceutical compositions further comprise one or more non-
toxic, pharmaceutically acceptable carriers and/or diluents and/or adjuvants.
For the purpose of administration to a patient in need of such treatment,
pharmaceutical formulations (also referred to as a pharmaceutical preparations,
pharmaceutical itions, ceutical products, nal products, medicines,
medications, or medicaments) comprise a therapeutically effective amount of a compound of
the present invention formulated with one or more excipients and/or drug carriers riate
to the indicated route of administration. In some embodiments, the compounds of the present
invention are ated in a manner amenable for the treatment of human and/or veterinary
patients. In some embodiments, formulation comprises admixing or ing one or more
of the compounds of the present invention with one or more of the following excipients:
lactose, sucrose, starch powder, cellulose esters of alkanoic acids, cellulose alkyl esters, talc,
stearic acid, magnesium stearate, magnesium oxide, sodium and m salts of phosphoric
and sulfuric acids, gelatin, acacia, sodium alginate, polyvinylpyrrolidone, and/or polyvinyl
alcohol. In some ments, e.g., for oral administration, the pharmaceutical formulation
may be tableted or encapsulated. In some ments, the compounds may be dissolved or
slurried in water, polyethylene glycol, propylene glycol, ethanol, corn oil, cottonseed oil,
peanut oil, sesame oil, benzyl alcohol, sodium chloride, and/or various buffers.
Pharmaceutical formulations may be subjected to conventional pharmaceutical operations,
such as sterilization and/or may contain drug carriers and/or excipients such as preservatives,
stabilizers, wetting agents, emulsifiers, encapsulating agents such as , dendrimers,
polymers, proteins such as albumin, or nucleic acids, and buffers, etc.
The pharmaceutical itions useful in the present sure may be subjected to
conventional pharmaceutical operations such as sterilization and/or may contain conventional
ceutical carriers and excipients such as preservatives, stabilizers, wetting agents,
emulsifiers, buffers, etc.
The compounds of the present disclosure may be administered by a variety of
methods, e.g., orally or by injection (6. g. subcutaneous, intravenous, intraperitoneal, etc).
Depending on the route of administration, the active compounds may be coated in a material
to protect the nd from the action of acids and other natural conditions which may
inactivate the nd. They may also be administered by continuous perfusion/infusion
of a disease or wound site.
To administer the therapeutic compound by other than parenteral administration, it
may be necessary to coat the compound with, or co-administer the compound with, a material
to prevent its inactivation. For example, the eutic compound may be administered to a
patient in an appropriate carrier, for example, mes, or a diluent. Pharmaceutically
acceptable diluents include saline and aqueous buffer solutions. Liposomes include water-in-
-water CGF emulsions as well as conventional liposomes.
The therapeutic compound may also be administered parenterally, eritoneally,
intraspinally, or intracerebrally. Dispersions can be prepared in glycerol, liquid polyethylene
glycols, and mixtures thereof and in oils. Under ordinary conditions of storage and use, these
preparations may n a preservative to prevent the growth of microorganisms.
Pharmaceutical compositions may be suitable for able use include sterile
aqueous solutions (where water soluble) or dispersions and sterile powders for the
oraneous preparation of sterile injectable solutions or dispersion. In all cases, the
ition must be sterile and must be fluid to the extent that easy ability exists. It
must be stable under the conditions of manufacture and storage and must be preserved t
the contaminating action of microorganisms such as bacteria and fungi. The carrier can be a
solvent or dispersion medium containing, for example, water, ethanol, polyol (such as,
glycerol, propylene glycol, and liquid hylene glycol, and the like), suitable mixtures
thereof, and vegetable oils. The proper fluidity can be maintained, for example, by the use of
a coating such as lecithin, by the maintenance of the required particle size in the case of
dispersion and by the use of surfactants. Prevention of the action of microorganisms can be
achieved by various antibacterial and antifungal agents, for example, parabens,
chlorobutanol, phenol, ascorbic acid, thimerosal, and the like. In many cases, it may be
useful to include isotonic agents, for example, sugars, sodium chloride, or polyalcohols such
as mannitol and sorbitol, in the composition. Prolonged absorption of the injectable
compositions can be brought about by including in the composition an agent which delays
absorption, for example, aluminum monostearate or n.
Sterile injectable solutions can be prepared by incorporating the eutic
compound in the required amount in an appropriate solvent with one or a combination of
ingredients ated above, as required, followed by filtered ization. Generally,
sions are prepared by incorporating the therapeutic compound into a sterile carrier
which contains a basic dispersion medium and the required other ingredients from those
enumerated above. In the case of e s for the preparation of sterile injectable
solutions, the methods of ation include vacuum drying and freeze-drying which yields
a powder of the active ingredient (l'.e., the eutic compound) plus any additional desired
ingredient from a previously sterile-filtered solution thereof.
The therapeutic compound can be orally administered, for example, with an inert
diluent or an assimilable edible carrier. The eutic compound and other ingredients may
also be enclosed in a hard or soft shell gelatin capsule, compressed into tablets, or
incorporated directly into the subject’s diet. For oral therapeutic administration, the
therapeutic compound may be incorporated with excipients and used in the form of ingestible
tablets, buccal tablets, troches, capsules, elixirs, suspensions, syrups, wafers, and the like.
The percentage of the therapeutic compound in the compositions and preparations may, of
course, be . The amount of the therapeutic compound in such therapeutically useful
compositions is such that a suitable dosage will be obtained.
In some embodiments, it is ageous to formulate parenteral compositions in
dosage unit form for ease of administration and uniformity of dosage. Dosage unit form as
used herein refers to physically discrete units suited as y dosages for the subjects to be
treated, each unit containing a predetermined quantity of therapeutic compound calculated to
produce the desired eutic effect in association with the required pharmaceutical carrier.
The specification for the dosage unit forms of the disclosure are ed by and directly
dependent on (a) the unique teristics of the therapeutic compound and the particular
therapeutic effect to be achieved, and (b) the limitations inherent in the art of nding
such a therapeutic compound for the treatment of a selected condition in a patient.
In some embodiments, the therapeutic compound may also be administered topically
to the skin, eye, or mucosa. Alternatively, if local delivery to the lungs is desired, the
therapeutic compound may be administered by inhalation in a dry-powder or aerosol
formulation.
Active compounds are administered at a therapeutically effective dosage sufficient to
treat a condition associated with a condition in a patient. For example, the efficacy of a
compound can be evaluated in an animal model system that may be predictive of efficacy in
treating the disease in a human or another animal, such as the model systems shown in the
examples and gs.
An effective dose range of a therapeutic can be olated from effective doses
determined in animal studies for a variety of ent animals. In general a human
equivalent dose (HED) in mg/kg can be calculated in ance with the following formula
(see, e.g., Reagan-Shaw et 61]., 2008, which is orated herein by reference):
HED (mg/kg) = Animal dose (mg/kg) X (Animal Km/Human Km)
Use of the Km factors in conversion results in more accurate HED , which are based on
body surface area (BSA) rather than only on body mass. Km values for humans and various
animals are well known. For example, the Km for an average 60 kg human (with a BSA of 1.6
m2) is 37, whereas a 20 kg child (BSA 0.8 m2) would have a Km of 25. Km for some nt
animal models are also well known, including: mice Km of 3 (given a weight of 0.02 kg and
BSA of 0.007), hamster K111 of 5 (given a weight of 0.08 kg and BSA of 0.02), rat K111 of 6
(given a weight of 0.15 kg and BSA of 0.025) and monkey K111 of 12 (given a weight of 3 kg
and BSA of 0.24).
Precise amounts of the therapeutic composition depend on the judgment of the
tioner and are peculiar to each individual. Nonetheless, a calculated HED dose provides
a general guide. Other factors affecting the dose include the physical and clinical state of the
patient, the route of administration, the intended goal of treatment and the potency, stability
and toxicity of the particular therapeutic ation.
The actual dosage amount of a compound of the present disclosure or composition
comprising a compound of the present disclosure administered to a subject may be
determined by physical and physiological factors such as type of animal treated, age, sex,
body weight, severity of condition, the type of e being treated, us or concurrent
therapeutic interventions, thy of the subject and on the route of administration. These
factors may be determined by a d artisan. The practitioner responsible for
stration will typically determine the concentration of active ingredient(s) in a
composition and appropriate dose(s) for the individual subject. The dosage may be adjusted
by the dual physician in the event of any complication.
An effective amount typically will vary from about 0.001 mg/kg to about 1000 mg/kg,
from about 0.01 mg/kg to about 750 mg/kg, from about 100 mg/kg to about 500 mg/kg, from
about 1.0 mg/kg to about 250 mg/kg, from about 10.0 mg/kg to about 150 mg/kg in one or
more dose administrations daily, for one or several days (depending of course of the mode of
administration and the factors discussed above). Other suitable dose ranges e 1 mg to
10000 mg per day, 100 mg to 10000 mg per day, 500 mg to 10000 mg per day, and 500 mg to
1000 mg per day. In some particular ments, the amount is less than 10,000 mg per
day with a range of 750 mg to 9000 mg per day.
The effective amount may be less than 1 mg/kg/day, less than 500 mg/kg/day, less
than 250 mg/kg/day, less than 100 mg/kg/day, less than 50 mg/kg/day, less than 25
mg/kg/day or less than 10 mg/kg/day. It may alternatively be in the range of 1 mg/kg/day to
200 mg/kg/day. For example, regarding treatment of diabetic patients, the unit dosage may
be an amount that reduces blood glucose by at least 40% as compared to an untreated subject.
In another embodiment, the unit dosage is an amount that reduces blood glucose to a level
that is :: 10% of the blood glucose level of a non-diabetic subject.
In other non-limiting examples, a dose may also comprise from about 1 micro-
g/body weight, about 5 ram/kg/body weight, about 10 microgram/kg/body
weight, about 50 microgram/kg/body weight, about 100 microgram/kg/body , about
200 microgram/kg/body weight, about 350 microgram/kg/body weight, about 500
microgram/kg/body weight, about 1 milligram/kg/body weight, about 5 milligram/kg/body
weight, about 10 milligram/kg/body , about 50 milligram/kg/body weight, about 100
milligram/kg/body weight, about 200 milligram/kg/body , about 350
ram/kg/body weight, about 500 milligram/kg/body weight, to about 1000 mg/kg/body
weight or more per administration, and any range derivable therein. In miting examples
of a derivable range from the numbers listed herein, a range of about 5 mg/kg/body weight to
about 100 mg/kg/body weight, about 5 microgram/kg/body weight to about 500
milligram/kg/body weight, etc, can be administered, based on the numbers described above.
In certain embodiments, a pharmaceutical composition of the present disclosure may
comprise, for example, at least about 0.1% of a nd of the present disclosure. In other
embodiments, the compound of the present disclosure may se n about 1% to
about 75% of the weight of the unit, or between about 25% to about 60%, for example, and
any range derivable therein.
Single or multiple doses of the agents are contemplated. Desired time intervals for
delivery of multiple doses can be determined by one of ordinary skill in the art employing no
more than routine experimentation. As an example, subjects may be administered two doses
daily at approximately 12 hour intervals. In some embodiments, the agent is administered
once a day.
The agent(s) may be administered on a routine schedule. As used herein a routine
schedule refers to a predetermined designated period of time. The routine schedule may
encompass periods of time which are identical or which differ in length, as long as the
schedule is predetermined. For instance, the routine schedule may involve administration
twice a day, every day, every two days, every three days, every four days, every five days,
every six days, a weekly basis, a y basis or any set number of days or weeks there-
between. Alternatively, the predetermined routine schedule may involve administration on a
twice daily basis for the first week, followed by a daily basis for several months, etc. In other
ments, the disclosure es that the agent(s) may taken orally and that the timing
of which is or is not dependent upon food . Thus, for example, the agent can be taken
every morning and/or every evening, regardless of when the subject has eaten or will eat.
V. Combination Therapy
In addition to being used as a monotherapy, the compounds of the present disclosure
may also find use in combination therapies. Effective combination therapy may be achieved
with a single composition or pharmacological formulation that includes both agents, or with
two distinct compositions or formulations, administered at the same time, wherein one
composition es a compound of this disclosure, and the other includes the second
agent(s). Alternatively, the y may precede or follow the other agent ent by
intervals ranging from minutes to months.
Non-limiting examples of such combination y include combination of one or
more nds of the disclosure with r agent, for example, an anti-inflammatory
agent, a chemotherapeutic agent, radiation therapy, an antidepressant, an antipsychotic agent,
an anticonvulsant, a mood izer, an anti-infective agent, an antihypertensive agent, a
cholesterol-lowering agent or other modulator of blood lipids, an agent for promoting weight
loss, an rombotic agent, an agent for treating or preventing vascular events such
as myocardial infarction or stroke, an antidiabetic agent, an agent for reducing transplant
rejection or graft-versus-host disease, an anti-arthritic agent, an analgesic agent, an thmatic
agent or other treatment for respiratory diseases, or an agent for treatment or
prevention of skin disorders. Compounds of the disclosure may be combined with agents
designed to e a patient’s immune se to cancer, including (but not limited to)
cancer vaccines.
VI. Definitions
When used in the context of a chemical group: “hydrogen” means —H, “hydroxy”
means —OH, “oxo” means =0, “carbonyl” means —C(=O)—, “carboxy” means —C(=O)OH
(also written as —COOH or —C02H), “halo” means independently —F, —Cl, —Br or —I, and
“amino” means —NH2.
In the context of chemical formulas, the symbol “—” means a single bond, “=” means
a double bond, and “E” means triple bond. The symbol “————” represents an optional bond,
which if present is either single or double. The symbol “--—--” represents a single bond or a
double bond. Thus, for example, the formula includes 0 O E: O and
Q. And it is understood that no one such ring atom forms part of more than one double
bond. Furthermore, it is noted that the covalent bond symbol “”,— when connecting one or
2016/069511
two stereogenic atoms, does not indicate any preferred stereochemistry. Instead, it covers all
stereoisomers as well as mixtures thereof. The symbol “m when drawn perpendicularly
across a bond l—CH3 for methyl) indicates a point of attachment of the group. It is
noted that the point of attachment is typically only identified in this manner for larger groups
in order to assist the reader in unambiguously identifying a point of ment. The symbol
“‘ ” means a single bond where the
group attached to the thick end of the wedge is “out of
the page.” The symbol “""”| ” means a single bond where the group attached to the thick end
of the wedge is “into the page”. The symbol “WVI ” means a single bond where the
geometry around a double bond (e.g., either E or Z) is undefined. Both options, as well as
combinations thereof are ore intended. Any undefined valency on an atom of a
structure shown in this application implicitly represents a hydrogen atom bonded to that
atom. A bold dot on a carbon atom tes that the hydrogen attached to that carbon is
oriented out of the plane of the paper.
For the chemical groups and compound s, the number of carbon atoms in the
group or class is as indicated as follows: “Cn” defines the exact number (n) of carbon atoms
in the group/class. “CSn” defines the maximum number (n) of carbon atoms that can be in
the group/class, with the minimum number as small as possible for the group/class in
question, e.g., it is understood that the minimum number of carbon atoms in the group
“alkenyl(css)” or the class “alkene(css)” is two. Compare with “alkoxy(Cg10)”, which
ates alkoxy groups having from 1 to 10 carbon atoms. “Cn-n’” defines both the
minimum (11) and maximum number (n’) of carbon atoms in the group. Thus, “alkyl(c2—10)”
designates those alkyl groups having from 2 to 10 carbon atoms. These carbon number
indicators may precede or follow the al groups or class it modifies and it may or may
not be enclosed in parenthesis, without signifying any change in meaning. Thus, the terms
“C5 olefin”, “CS-olefin”, “olef1n(CS)”, and “olefincs” are all synonymous.
The term “saturated” when used to modify a compound or chemical group means the
compound or chemical group has no carbon-carbon double and no carbon-carbon triple
bonds, except as noted below. When the term is used to modify an atom, it means that the
atom is not part of any double or triple bond. In the case of substituted versions of saturated
, one or more carbon oxygen double bond or a carbon nitrogen double bond may be
present. And when such a bond is present, then carbon-carbon double bonds that may occur
as part of keto-enol tautomerism or imine/enamine tautomerism are not precluded. When the
2016/069511
term “saturated” is used to modify a solution of a substance, it means that no more of that
substance can dissolve in that solution.
The term “aliphatic” when used without the “substituted” r signifies that the
compound or chemical group so modified is an acyclic or cyclic, but non-aromatic
hydrocarbon compound or group. In aliphatic compounds/groups, the carbon atoms can be
joined together in straight chains, branched chains, or non-aromatic rings (alicyclic).
Aliphatic compounds/groups can be saturated, that is joined by single carbon-carbon bonds
(alkanes/alkyl), or unsaturated, with one or more carbon-carbon double bonds
(alkenes/alkenyl) or with one or more carbon-carbon triple bonds (alkynes/alkynyl).
The term “aromatic” when used to modify a compound or a chemical group refers to a
planar unsaturated ring of atoms with 4n +2 electrons in a fully conjugated cyclic 7: system.
The term “alkyl” when used without the “substituted” modifier refers to a monovalent
saturated aliphatic group with a carbon atom as the point of attachment, a linear or branched
acyclic ure, and no atoms other than carbon and en. The groups —CH3 (Me),
—CH2CH3 (Et), —CH2CH2CH3 (n-Pr or propyl), —CH(CH3)2 (i-Pr, l'Pr or isopropyl),
—CH2CH2CH2CH3 (n-Bu), 3)CH2CH3 (sec-butyl), —CH2CH(CH3)2 (isobutyl),
—C(CH3)3 (tert—butyl, t—butyl, t—Bu or fBu), and —CH2C(CH3)3 (neo-pentyl) are non-limiting
es of alkyl . The term “alkanediyl” when used without the “substituted”
modifier refers to a divalent saturated aliphatic group, with one or two saturated carbon
atom(s) as the point(s) of attachment, a linear or branched acyclic structure, no carbon-carbon
double or triple bonds, and no atoms other than carbon and hydrogen. The groups —CH2—
(methylene), —CH2CH2—, —CH2C(CH3)2CH2—, and 2CH2— are non-limiting examples
of alkanediyl groups. The term “alkylidene” when used without the ituted” modifier
refers to the nt group =CRR’ in which R and R’ are independently hydrogen or alkyl.
Non-limiting examples of alkylidene groups include: =CH2, =CH(CH2CH3), and =C(CH3)2.
An “alkane” refers to the class of compounds having the formula H—R, wherein R is alkyl as
this term is defined above. When any of these terms is used with the “substituted” modifier
one or more hydrogen atom has been independently replaced by —OH, —F, —Cl, —Br, —I,
—NH2, —N02, —C02H, —C02CH3, —CN, —SH, —OCH3, —OCH2CH3, —C(O)CH3, —NHCH3,
CH3, —N(CH3)2, —C(O)NH2, —C(O)NHCH3, —C(O)N(CH3)2, —OC(O)CH3,
—NHC(O)CH3, 0H, or —S(O)2NH2. The following groups are non-limiting examples
of substituted alkyl groups: —CH20H, —CH2Cl, —CF3, —CH2CN, —CH2C(O)OH,
—CH2C(O)OCH3, —CH2C(O)NH2, —CH2C(O)CH3, —CH20CH3, —CH20C(O)CH3, —CH2NH2,
—CH2N(CH3)2, and —CH2CH2Cl. The term “haloalkyl” is a subset of substituted alkyl, in
which the hydrogen atom replacement is d to halo (i.e. —F, —Cl, —Br, or —I) such that no
other atoms aside from carbon, hydrogen and halogen are present. The group, —CH2Cl is a
miting example of a haloalkyl. The term “fluoroalkyl” is a subset of substituted alkyl,
in which the hydrogen atom replacement is limited to fluoro such that no other atoms aside
from carbon, hydrogen and fluorine are present. The groups —CH2F, —CF3, and 3 are
non-limiting examples of fluoroalkyl groups.
The term “alkoxy” when used without the “substituted” modifier refers to the group
—OR, in which R is an alkyl, as that term is defined above. Non-limiting examples e:
—OCH3 (methoxy), —OCH2CH3 (ethoxy), —OCH2CH2CH3, —OCH(CH3)2 (isopropoxy),
—OC(CH3)3 (tert—butoxy), —OCH(CH2)2, —O—cyclopentyl, and —O—cyclohexyl. The term
“fluoroalkoxy” when used without the “substituted” modifier, refers to groups, defined as
—OR, in which R is fluoroalkyl. The term “alkylthio” and “acylthio” when used without the
“substituted” modifier refers to the group —SR, in which R is an alkyl and acyl, respectively.
The term “alcohol” corresponds to an , as defined above, wherein at least one of the
hydrogen atoms has been ed with a hydroxy group. The term “ether” corresponds to an
, as defined above, wherein at least one of the hydrogen atoms has been ed with
an alkoxy group. When any of these terms is used with the “substituted” modifier one or
more hydrogen atom has been independently replaced by OH, F, Cl, Br, I, NH2,
—N02, —C02H, —C02CH3, —CN, —SH, —OCH3, —OCH2CH3, —C(O)CH3, —NHCH3,
—NHCH2CH3, —N(CH3)2, —C(O)NH2, —C(O)NHCH3, —C(O)N(CH3)2, —OC(O)CH3,
—NHC(O)CH3, —S(O)2OH, or —S(O)2NH2.
The term “effective,” as that term is used in the specification and/or claims, means
adequate to accomplish a desired, expected, or intended . “Effective amount,”
“Therapeutically ive amount” or “pharmaceutically effective amount” when used in the
context of treating a patient or subject with a compound means that amount of the compound
which, when administered to a subject or patient for treating a disease, is sufficient to effect
such treatment for the disease.
As used herein, the term “ICso” refers to an tory dose which is 50% of the
m se obtained. This quantitative measure indicates how much of a particular
drug or other substance (inhibitor) is needed to inhibit a given biological, biochemical or
chemical process (or component of a process, i.e. an enzyme, cell, cell receptor or
microorganism) by half.
An “isomer” of a first compound is a te compound in which each molecule
contains the same constituent atoms as the first compound, but where the configuration of
those atoms in three dimensions differs.
As used herein, the term “patient” or “subject” refers to a living ian
organism, such as a human, monkey, cow, sheep, goat, dog, cat, mouse, rat, guinea pig, or
transgenic species thereof. In certain ments, the patient or subject is a e. Non-
limiting examples of human subjects are , juveniles, infants and s.
As generally used herein “pharmaceutically able” refers to those compounds,
materials, compositions, and/or dosage forms which are, within the scope of sound medical
judgment, suitable for use in contact with the tissues, organs, and/or bodily fluids of human
beings and animals without excessive toxicity, irritation, allergic response, or other problems
or complications surate with a reasonable benefit/risk ratio.
“Pharmaceutically acceptable salts” means salts of compounds of the present
disclosure which are pharmaceutically acceptable, as defined above, and which possess the
desired pharmacological activity. Such salts e acid addition salts formed with
inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid,
phosphoric acid, and the like, or with organic acids such as hanedisulfonic acid,
oxyethanesulfonic acid, 2-naphthalenesulfonic acid, 3-phenylpropionic acid,
ethylenebis(3-hydroxyene-l-carboxylic acid), 4-methylbicyclo[2.2.2]octene-
l-carboxylic acid, acetic acid, aliphatic mono- and dicarboxylic acids, aliphatic sulfuric acids,
aromatic ic acids, benzenesulfonic acid, benzoic acid, camphorsulfonic acid, carbonic
acid, cinnamic acid, citric acid, cyclopentanepropionic acid, ethanesulfonic acid, fumaric
acid, glucoheptonic acid, gluconic acid, ic acid, glycolic acid, heptanoic acid, hexanoic
acid, hydroxynaphthoic acid, lactic acid, laurylsulfuric acid, maleic acid, malic acid, malonic
acid, mandelic acid, methanesulfonic acid, muconic acid, 0-(4-hydroxybenzoyl)benzoic acid,
oxalic acid, p—chlorobenzenesulfonic acid, phenyl-substituted alkanoic acids, propionic acid,
p—toluenesulfonic acid, pyruvic acid, salicylic acid, stearic acid, succinic acid, tartaric acid,
tertiarybutylacetic acid, trimethylacetic acid, and the like. Pharmaceutically acceptable salts
also include base addition salts which may be formed when acidic protons present are capable
of reacting with inorganic or organic bases. Acceptable inorganic bases include sodium
hydroxide, sodium carbonate, potassium hydroxide, aluminum hydroxide and calcium
hydroxide. Acceptable organic bases include ethanolamine, diethanolamine, triethanolamine,
hamine, N—methylglucamine and the like. It should be recognized that the particular
anion or cation forming a part of any salt of this disclosure is not critical, so long as the salt,
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as a whole, is pharmacologically able. Additional examples of ceutically
acceptable salts and their methods of preparation and use are presented in Handbook of
Pharmaceutical Salts: Properties, and Use (P. H. Stahl & C. G. Wermuth eds., Verlag
Helvetica Chimica Acta, 2002).
The term “pharmaceutically acceptable carrier,” as used herein means a
pharmaceutically-acceptable material, composition or vehicle, such as a liquid or solid filler,
diluent, excipient, solvent or encapsulating material, involved in carrying or transporting a
chemical agent.
“Prevention” or nting” es: (1) inhibiting the onset of a disease in a
subject or patient which may be at risk and/or predisposed to the disease but does not yet
experience or display any or all of the pathology or symptomatology of the disease, and/or (2)
slowing the onset of the pathology or symptomatology of a disease in a subject or patient
which may be at risk and/or predisposed to the disease but does not yet experience or display
any or all of the pathology or symptomatology of the disease.
“Prodrug” means a compound that is convertible in vivo metabolically into an
inhibitor according to the present disclosure. The prodrug itself may or may not also have
activity with respect to a given target protein. For example, a compound sing a
hydroxy group may be administered as an ester that is converted by hydrolysis in vivo to the
hydroxy compound. Suitable esters that may be ted in vivo into hydroxy nds
include acetates, citrates, es, ates, tartrates, malonates, oxalates, salicylates,
propionates, succinates, fumarates, maleates, methylene-bis-[3-hydroxynaphthoate, gentisates,
isethionates, di-p-toluoyltartrates, methanesulfonates, ethanesulfonates, benzenesulfonates,
p-toluenesulfonates, cyclohexylsulfamates, quinates, esters of amino acids, and the like.
Similarly, a compound comprising an amine group may be administered as an amide that is
converted by hydrolysis in vivo to the amine nd.
A “stereoisomer” or “optical isomer” is an isomer of a given compound in which the
same atoms are bonded to the same other atoms, but where the ration of those atoms
in three dimensions differs. “Enantiomers” are stereoisomers of a given compound that are
mirror images of each other, like left and right hands. “Diastereomers” are stereoisomers of a
given compound that are not enantiomers. Chiral les contain a chiral center, also
referred to as a stereocenter or stereogenic center, which is any point, though not necessarily
an atom, in a molecule bearing groups such that an interchanging of any two groups leads to a
stereoisomer. In c compounds, the chiral center is typically a carbon, phosphorus or
sulfur atom, though it is also possible for other atoms to be stereocenters in organic and
inorganic compounds. A molecule can have multiple stereocenters, giving it many
stereoisomers. In compounds whose isomerism is due to tetrahedral stereogenic s
(e.g., tetrahedral carbon), the total number of hypothetically possible isomers will not
exceed 2“, where n is the number of edral stereocenters. Molecules with symmetry
frequently have fewer than the maximum possible number of stereoisomers. A 50:50 mixture
of enantiomers is referred to as a racemic mixture. Alternatively, a mixture of enantiomers
can be omerically enriched so that one enantiomer is present in an amount greater than
50%. lly, enantiomers and/or diastereomers can be resolved or separated using
techniques known in the art. It is contemplated that that for any stereocenter or axis of
chirality for which stereochemistry has not been defined, that stereocenter or axis of chirality
can be present in its R form, S form, or as a e of the R and S forms, including racemic
and non-racemic mixtures. As used herein, the phrase “substantially free from other
stereoisomers” means that the composition contains S 15%, more preferably S 10%, even
more preferably S 5%, or most preferably S 1% of another stereoisomer(s).
“Substituent convertible to hydrogen in viva” means any group that is convertible to a
hydrogen atom by enzymological or chemical means including, but not limited to, hydrolysis
and hydrogenolysis. Examples include hydrolyzable groups, such as acyl groups, groups
having an oxycarbonyl group, amino acid residues, peptide residues, 0-nitrophenylsulfenyl,
trimethylsilyl, tetrahydropyranyl, diphenylphosphinyl, and the like. Examples of acyl groups
include formyl, acetyl, trifluoroacetyl, and the like. Examples of groups having an
oxycarbonyl group include ethoxycarbonyl, utoxycarbonyl (—C(O)OC(CH3)3),
benzyloxycarbonyl, p-methoxybenzyloxycarbonyl, vinyloxycarbonyl, B-(p-
toluenesulfonyl)ethoxycarbonyl, and the like. Suitable amino acid residues include, but are
not limited to, residues of Gly (glycine), Ala (alanine), Arg (arginine), Asn (asparagine), Asp
tic acid), Cys (cysteine), Glu (glutamic acid), His (histidine), Ile ucine), Leu
(leucine), Lys (lysine), Met (methionine), Phe (phenylalanine), Pro (proline), Ser (serine),
Thr nine), Trp (tryptophan), Tyr (tyrosine), Val (valine), Nva (norvaline), Hse
(homoserine), 4-Hyp (4-hydroxyproline), 5-Hyl (5-hydroxylysine), Om (omithine) and B-
Ala. Examples of suitable amino acid residues also include amino acid es that are
protected with a protecting group. Examples of suitable protecting groups include those
typically employed in peptide sis, including acyl groups (such as formyl and acetyl),
thoxycarbonyl groups (such as benzyloxycarbonyl and p-nitrobenzyloxycarbonyl),
tert—butoxycarbonyl groups (—C(O)OC(CH3)3), and the like. Suitable peptide residues
include peptide residues comprising two to five amino acid residues. The residues of these
amino acids or peptides can be present in stereochemical configurations of the , the L-
form or mixtures thereof. In addition, the amino acid or e residue may have an
asymmetric carbon atom. Examples of suitable amino acid residues having an asymmetric
carbon atom e residues of Ala, Leu, Phe, Trp, Nva, Val, Met, Ser, Lys, Thr and Tyr.
Peptide residues having an asymmetric carbon atom include peptide residues having one or
more constituent amino acid residues having an asymmetric carbon atom. Examples of
suitable amino acid protecting groups include those typically ed in peptide synthesis,
including acyl groups (such as formyl and ), arylmethoxycarbonyl groups (such as
benzyloxycarbonyl and p-nitrobenzyloxycarbonyl), tert—butoxycarbonyl groups
(—C(O)OC(CH3)3), and the like. Other es of substituents “convertible to hydrogen in
viva” include reductively eliminable enolyzable groups. Examples of suitable
reductively eliminable hydrogenolyzable groups include, but are not limited to, arylsulfonyl
groups (such as 0-toluenesulfonyl), methyl groups substituted with phenyl or oxy
(such as benzyl, trityl and benzyloxymethyl), arylmethoxycarbonyl groups (such as
benzyloxycarbonyl and o-methoxy-benzyloxycarbonyl), and haloethoxycarbonyl groups
(such as B,B,B-trichloroethoxycarbonyl and ethoxycarbonyl).
ment” or “treating” includes (1) inhibiting a disease in a subject or patient
experiencing or displaying the pathology or symptomatology of the disease (eg, arresting
further development of the pathology and/or symptomatology), (2) ameliorating a disease in a
subject or patient that is experiencing or displaying the pathology or symptomatology of the
disease (e.g., reversing the pathology and/or symptomatology), and/or (3) effecting any
measurable decrease in a disease in a subject or patient that is experiencing or displaying the
pathology or matology of the disease.
Other abbreviations used herein are as follows: 1H NMR is proton nuclear magnetic
resonance, AcOH is acetic acid, Ar is argon, ACN or CH3CN is acetonitrile, CHN analysis is
carbon/hydrogen/nitrogen elemental analysis, CHNCl analysis is
carbon/hydrogen/nitrogen/chlorine elemental analysis, CHNS is is
carbon/hydrogen/nitrogen/sulfur elemental analysis, DI water is deionized water, DIC is
ropyl carbodiimide, DMA is N,N—dimethylacetamide, DMAP is 4-(N,N-
dimethylamino)pyridine, DMF is N,N—dimethylformamide, EDCl is l-(3-
dimethylaminopropyl)ethylcarbodiimide hydrochloride, EtOAc is ethyl e, EtOH is
ethanol, FAB MS is fast atom bombardment mass spectroscopy, g is gram(s), HOBT is 1-
hydroxybenzotriazole hydrate, HPLC is high performance liquid chromatography, IBCF is
isobutylchloroformate, KSCN is potassium thiocyanate, L is liter, LiOH is lithium hydroxide,
MEM is methoxyethoxymethyl, MEMCl is methoxyethoxymethyl chloride, MeOH is
methanol, mg is milligram, MgSO4 is magnesium sulfate, ml is milliliter, mL is milliliter, MS
is mass spectroscopy, MTBE is methyl tert-butyl ether, N2 is nitrogen, NaHCO3 is sodium
bicarbonate, NaOH is sodium hydroxide, Na2SO4 is sodium sulfate, NMM is N-
morpholine, NMP is N—methyl pyrrolidinone, NMR is r magnetic resonance,
P205 is phosphorous pentoxide, PTSA is para-toluenesulfonic acid, RPHPLC is reverse phase
high performance liquid chromatography, RT is room temperature, TFA is roacetic
acid, THF is tetrahydrofuran, TMS is trimethylsilyl, and A signifies heating the reaction
mixture.
The above tions supersede any conflicting definition in any of the reference that
is incorporated by reference herein. The fact that certain terms are defined, however, should
not be considered as indicative that any term that is undefined is indefinite. Rather, all terms
used are believed to describe the disclosure in terms such that one of ordinary skill can
iate the scope and practice the present disclosure.
VII. Examples
The following examples are included to demonstrate preferred ments of the
disclosure. It should be appreciated by those of skill in the art that the techniques disclosed in
the examples which follow represent techniques ered by the inventor to function well
in the practice of the disclosure, and thus can be considered to constitute preferred modes for
its practice. However, those of skill in the art should, in light of the present disclosure,
appreciate that many s can be made in the specific embodiments which are disclosed
and still obtain a like or similar result without departing from the spirit and scope of the
disclosure.
A. Instrumentation and General Methods.
Analytical HPLC analyses were performed on an Agilent 1100 system and LC-MS
analyses were conducted on Agilent 1100 Series LC/MSD . Reverse-phase
preparative HPLC purifications were med on a e SP4 HPFC system using a
variable dual ngth UV detector on a Biotage KP-C18-HS 120 g SNAP column using
acetonitrile/water gradient containing 0.05% TFA. All final compounds were analyzed by
analytical HPLC and peaks were monitored at 210, 254 and 280 nM for purity. 1H and 19F
NMR spectra were ed in DMSO-da on a Bruker Avance-III/400 MHz spectrometer
2016/069511
equipped with a Broad Band NMR probe. The signal of the deuterated solvent was used as an
internal reference. The chemical shifts are expressed in ppm (6) and coupling constants (J) are
reported in hertz (Hz). 19F NMR detects a signal for the TFA salt of final ts (~74 ppm)
stemming from TFA in the prep HPLC solvents during final purification. Reactions were
performed under an atmosphere of dry nitrogen unless otherwise stated.
B. Preparation of Compounds
Example A
Preparation of 3-Hydroxy-S-((5-hydroxy-1,4,5,6-tetrahydropyrimidin-Z-
nobenz0ic acid
NYN COZH
OH
3-Hydroxy((5 -hydroxy- l ,4,5,6-tetrahydropyrimidinyl)aminobenzoic acid was
synthesized according to literature procedures (see Organic Process ch &
Development, 8:571-575, 2004, which is incorporated herein by reference).
Example B
Preparation of ydroxy((5—hydroxy-1,4,5,6-tetrahydr0pyrimidin
yl)amino)benzamido) acetic acid
N N
Y NH
NH OH
HO Hf
OH 0
2-(3-Hydroxy((5-hydroxy-l,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid was prepared according to the following procedure:
Coupling of 3-hydroxy((5—hydr0xy—1,4,5,6-tetrahydr0pyrimidin-2—
yl)aminobenz0ic acid with glycine ethyl ester:
O O
N H “0'
N H
Y OH HZN/\n/002H5 DIC
I \ NH
NH + DMF/DCM 1:1 NH
HO o HO 51/00sz
OH OH 0
To a suspension of 3-hydroxy((5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)aminobenzoic acid (9.013 g, 35.87 mmol) in a 1:1 mixture of DMF (50.0 mL) and DCM
(50.0 mL) was added glycine ethyl ester hydrochloride (5.02 g, 35.95 mmol) and the mixture
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was stirred at room temperature under nitrogen here. Neat N,N’-
diisopropylcarbodiimide (6.75 mL, 43.60 mmol) was added to above reaction mixture and the
mixture was stirred at room temperature ght to give a colorless suspension. The crude
reaction mixture was used as such for the hydrolysis of the above ester.
Y NH 2.5 N NaOH NYN NH
NH OC2H5
HO NH
HO l\fl/OH
OH 0
OH 0
The above crude reaction mixture was cooled to 10 °C (ice-bath) and a 2.5 N NaOH
solution (90.0 mL) was added slowly with stirring, the solution temperature was kept below
0C, to give a pale yellow solution/suspension. The reaction mixture was stirred at room
temperature for 1.5 h. The reaction mixture was acidified with 5N HCl with stirring to pH 5
to give a colorless itate and the mixture was stirred at room temperature for another 15
min and filtered to give a colorless solid. The solid was washed with water (1X25 mL) and
then with acetonitrile (1X25 mL). The solid was dried in-vacuo to give a colorless powder
(9.686 g, yield 88%).
1H NMR (400 MHz, D20): 5 3.37 (dd, J = 12.7 and 3.1 Hz, 2H), 3.50 (dd, J = 12.7
and 2.8 Hz, 2H), 4.17 (s, 2H), 4.37 (m, 1H), 6.97 (t, J = 2.01 Hz, 1H), 7.17-7.26 (m, 2H). 1
NMR spectrum of the sample was consistent with the suggested structure of the product.
Example C
Preparation of 5-((5-hydroxy-1,4,5,6-tetrahydr0pyrimidinyl)amino nicotinic
acid
N N COZH
LE\ \
HO N
-((5 -hydroxy-1,4,5,6-tetrahydropyrimidinyl)amino nic acid was. prepared
according to the following procedure:
Step 1
HZNfiOl-l H H
PhCONCS “\n/N \ OH
CH3CN r.t 1h 0 s /
90% 2
A mixture of compound 1 (40 g, 0.3 mol) and benzoylisothiocyanate (95 g, 0.58 mol)
in CH3CN (2.0 L) was stirred at room temperature for 12 h. TLC showed no starting al
left. The precipitate was filtered and washed with CH3CN, dried to afford Compound 2
(80 g, 90%) as a light yellow solid.
Step2
O O
H H
HN H
NTN 2
\ NaOMe \
OH OH
l \n/ l
O S N/ MeOH,r.t,1h s /
2 3
Into a stirred solution of compound 2 (80 g, 0.27 mol) in anhydrous CH3OH (500 ml)
was added NaOMe (28.5 g, 0.53 mol) slowly at room ature. A clear solution resulted
in 20 min, and the reaction mixture was stirred for l h. The solvent was removed and the
residue was triturated with t-BuOMe to leave a light yellow powder. The powder was diluted
with H20, acidified to pH=2-3. The yellow solid formed was filtered, dried to afford
Compound 3 (33.7 g, 65%).
Step 3
H “N N
H N Mel EtOH \
S / reflux, 5h S /
\ N
3 4
l5 Into a stirred solution of compound 3 (33.7 g, 0.17 mol) in DMF (200 mL) was added
CH3I (24.3 g, 0.17 mol) slowly at room temperature. The reaction mixture was stirred at RT
for 1 h. TLC showed no ng al left. The solvent was removed, and Compound 4
(34.3 g, 95%) was obtained as ayellow oil.
2016/069511
Step 4
0 /—<_ o
HN H HZN NH2
N H
Y \ OH Y \ OH
8 / reflux, 6h |
NH /
\ N HO N
4 Example C
A mixture of nd 4 (15.5 g, 0.074 mol) and the hydroxy diamino propane (20
g, 0.22 mol) in DMF (100 mL) was heated to reflux and stirred for 5 h. The solid formed was
filtered and dried. Example C (5.2 g, 30%) was obtained as a white solid.
LC/MS (M+H =237) is consistent for the desired product. 1H NMR: DMSO-da 400MHz 8
13053(&11D,9881@,2ED,8783(&11D,8630(a11D,7897(a11D,5492(&11D,4112
(s, 1H), 3.410 (s, 2H), 3228-3190 (m, 2H).
Example D
ation of 2-[[5-[(5-hydr0xy-1,4,5,6-tetrahydr0pyrimidin-2—
yl)amino] pyridine-S-carbonyl]amin0]acetic acid
H O
N N OH
r NW
HO N/
2-[[5- [(5 -hydroxy-1,4,5,6-tetrahydropyrimidinyl)amino]pyridine
carbonyl]amino] acetic acid was prepared according to the following procedure:
Step 1
0 H
H N N 00 H5
N N DIC \ 2
\{HW\ 0H + CIHH N 00sz Y
2 «6 | N/\[r
DMF/DCM/1:1 NH / 0
HO N
HO N
To a suspension of 5-((5-Hydroxy-1,4,5,6-tetrahydropyrimidinyl)amino)nicotinic
acid (1.20 g, 5.08 mmol) in a 1:1 mixture of DMF (10.0 mL) and DCM (10.0 mL) was added
glycine ethyl ester hydrochloride (0.798 g, 5.717 mmol) and the mixture was stirred at room
temperature under nitrogen atmosphere for 10 min. Neat N,N’-diisopropylcarbodiimide (1.10
mL, 7.104 mmol) was added to above reaction mixture and the mixture was stirred at room
ature overnight to give a colorless to cream suspension. The solvent was ated
m-vacuo to afford a pale yellow viscous e. LC-MS analysis of the residue shows the
desired product’s mass: m/z 322 (M+H), m/z 344 (M+Na) and m/z 643 (2M+H Calculated for
C14H19N504z32133. The crude product was used as such in the next step for the
saponification of the above ester.
Step2
H O
N H OH
I H NH O
NH / 0 HO N’
HO N
ExampleD
The above crude product was dissolved in a mixture of M (1:1) (10 mL) and
the solution was cooled to 10 °C (ice-bath) and a 2.5 N NaOH solution (10.0 mL) was added
slowly with stirring, the solution temperature was kept below 20 0C, to give a pale yellow
solution. The reaction mixture was stirred at room temperature overnight. The reaction
mixture was acidified with 5N HCl with stirring to pH 5 to give a yellow-orange solution.
The mixture was diluted with DCM (25 mL) and the organic and the aqueous layers were
separated. The aqueous layer was evaporated in-vacuo to afford a yellow gummy solid. The
crude product was purified by reverse-phase HPLC with a gradient 10-40% CH3CN in water
containing 0.05% TFA to give the desired product as a colorless to yellow gummy solid. The
solid was triturated with itrile to give a colorless to pale yellow crystalline solid which
was recrystallized from methanol to afford a cream solid (869.3 mg, yield 59%). LC-MS
analysis of the solid shows the desired t’s mass: m/Z 294 (M+H), and m/Z 316 ,
Calculated for C12H15N504z29328. 1H NMR (400 MHz, D20): 5 3.19 (dd, J = 12.47 and
3.67 Hz, 2H), 3.37 (dd, J = 12.47 and 2.93 Hz, 2H), 3.96 (s, 2H), 4.11 (m, 1H), 8.12 (t, J =
2.20 Hz, 1H), 8.64 (d, J = 2.45 Hz, 1H), 8.90 (d, J = 1.96 Hz, 1H). 1H NMR spectrum of the
nd was consistent with the suggested ure of the product as Example D.
Beta amino acids and their corresponding beta amino ester intermediates
Beta amino acids and their ponding beta amino ester ediates used as
starting materials and reagents in the synthesis of examples 1 — 17 can be synthesized as
depicted in Scheme 111 above. Briefly, such beta amino acids and esters can be synthesized
from the appropriate benzaldehyde and under the conditions depicted. Alternatively, the
appropriate benzaldehyde can be reacted with mono-ethyl or methyl malonate to yield the
racemic beta amino ethyl ester directly. Examples utilizing such an alternative method are
described below. Unless otherwise exemplified, all relevant benzaldehydes are readily
ble commercially or can be readily synthesized from the appropriate phenyl bromide, 12-
BuLi and DMF by methods known to those skilled in the art. As noted in Scheme III, the
corresponding c beta amino esters can be converted to the desired (5) enantiomer
2016/069511
either via supercritical fluid chiral chromatographic separation or via selective enzymatic
cleavage of the (5) beta amino ester with Amano Lipase PS (Sigma Aldrich) to the readily
isolated (S) beta amino acid, which can then be converted to the (S) ester and used as such for
the synthesis of the examples 1-17 disclosed herein.
The following are representative s exemplifying a variety of general
procedures used in various steps in the formation of all beta amino ester ediates
utilized in the synthesis of examples 1-17 which follow, and are meant to rate the
general utility of such methods:
Example E
Preparation of ethyl (3S)amino[3-chlor0
(trifluoromethyl)phenyl] propanoate hloride
COZEt
*HCI
CI CF3
COZEt
CH0 H2N
HOOCCHZCOOEt
NH4OAc,EtOH
CI CF3
CI CF3
NH4OAc (1.33 g, 0.12 mol), HOOCCH2COOEt (4.5 g, 0.034 mol) and benzaldehyde
1 (3.6 g, 0.017 mol) in EtOH (30 mL) were stirred at 70 °C for 6 h. The e was
concentrated and adjusted to pH=7.5 by addition of aq. NaHCO3. The mixture was extracted
with EtOAc (3X50 mL). The organic layer was washed with brine, dried with NazSO4 and
concentrated to dryness to give an oil. The crude product was purified via silica gel
chromatography to give c compound 2 (1.5 g, 29.4%). The (S) enantiomer, Example
E, was isolated using the enzymatic resolution procedures described for Example F (below).
Example F
Preparation of ethyl (3S)amino[3-bromo-5—
(trifluoromethyl)phenyl] propanoate hydrochloride
H N2
COZEt
*HCI
Br CF3
Step 1
Preparation 0fraceml'c ethyl 3-amin0[3-br0m0-5—(trl'fluoromethyUphenyljpropanoate
0000sz
Br CF3
Ethyl 3-amino[3-bromo(triflu0r0methyl)phenyl]propanoate was ed
according to the method described for the preparation of Example E, substituting 3-br0mo
trifluoromethyl benzaldehyde for 3-chlor0triflu0r0methyl benzaldehyde.
Step 2
Preparation of(3S)amtn0[3-br0m0-5—(trl'fluoromethyUphenyljpropanotc acid
H N2
COZH
Br CF3
Enzymatic resolution of the racemic mixture: A suspension of (rac)-ethyl 3-amin0-
3-[3-br0m0(tIiflu0romethyl)phenyl]propanoate (570.0 mg, 1.676 mmol) in 50 mM
KH2PO4 solution (30.0 mL) was stirred at room temperature and the pH of the aqueous layer
was adjusted to pH 8.32 by the addition of 1.0 N NaOH solution and 50 mM KH2PO4
solution. Amano Lipase PS (625.0 mg) was added to the above suspension and the reaction
mixture was stirred at room temperature for 2 days. The e was diluted with MTBE (25
mL) and reaction mixture was stirred at room temperature for 1 h to extract the (R)-ester. The
MTBE layer containing the (R)-ester was discarded after analyzing by LC-MS. Evaporation
of the s layer tn-vacuo afforded a cream solid containing the (S)—acid as well as
Amano Lipase and ate buffer salt. The above crude product was purified by e-
phase HPLC with a gradient 10-60% CH3CN in water containing 0.05% TFA to give the
desired product as a colorless glassy solid (231.0 mg). LC/MS analysis of the product shows
the desired product's mass: m/z 312 (79BrM+H), m/z 314 (SlBrM+H), m/z 334 (79BrM+Na), and
m/z 336 (SlBrM+Na), Calculated for C10H9BrF3N02: 312.08. The ed TFA salt of the (S)-
acid was used as such for the preparation of the (S)—ester.
Step 3
Preparation ofethyl (3S)amino[3-bromo(trifluoromethyl)phenyl]propanoate
hydrochloride (Example F)
H N2
COZEt
*HCI
Br CF3
To a solution of (3S)amino[3-bromo(trifluoromethyl)phenyl]propanoic acid
TFA salt from step 2 above (231.0 mg, 0.542 mmol) in absolute ethanol (3 mL) was added
absolute ethyl alcohol saturated with dry HCl gas (10 mL) and the reaction mixture was
stirred at room ature for 1.5 h. Evaporation of the solvent uo gave a colorless
crystalline solid, (Example F) (198.5 mg, 97%). LC-MS analysis of the solid shows the
desired product’s mass: m/z 340 (79BrM+H), m/z 342 (SlBrM+H), m/z 362 (79BrM+Na), and m/z
364 (SlBrM+Na), Calculated for C12H13BrF3N02: 340.14.
Example G
ation of ethyl (3S)amino[3-chlor0
oromethoxy)phenyl] propanoate hydrochloride
H N2
COZEt
*HCI
CI OCF3
Step 1
Preparation ofracemic ethyl 3-amino[3-chloro-5—(trifluoromethoxy)phenyl]propanoate
H N2
COZEt
CI OCF3
A solution of a mixture of 3-chloro(trifluoromethoxy)benzaldehyde (1.05 g, 4.676
mmol) mono-ethyl malonate (1.54 g, 11.69 mmol) and ammonium acetate (1.985 g, 25.75
mmol) in absolute l (30 mL) was heated at 80 °C overnight to give a colorless on.
The reaction mixture was cooled to room temperature and the solvent was evaporated in-
vacuo to give a yellow viscous liquid. The residue was partitioned between aqueous saturated
NaHCO3 solution (50 mL) and ethyl acetate (50 mL), the organic layer was removed, dried
over anhydrous sodium sulfate, d and evaporated in-vacuo to give a yellow-brown
viscous liquid (1.56 g). LC-MS is of the crude t shows the desired product's
mass: m/Z 312 (35C1M+H), m/Z 314 (37C1M+H), m/Z 334 (35C1M+Na), and m/Z 336 (37C1M+Na),
Calculated for C12H13ClF3NO3: 311.68. LC-MS also shows the uct: (E)-ethyl 3-(3-
chloro(trifluoromethoxy) phenyl)acrylate’s mass: m/z 295 (35C1M+H), and m/z 297
(37C1M+H), Calculated for C12H10ClF3O3: 294.65. To a solution of the crude residue in
absolute ethanol (2 mL) was added a 2.0 M solution of HCl in diethyl ether (10.0 mL) and the
reaction mixture was stirred at room temperature for 1 h to give a yellow solution. The
residue after evaporation of the solvents was partitioned between water (25 mL) and
dichloromethane (50 mL). The organic and the aqueous layers were separated. The aqueous
layer was evaporated in-vacuo to afford a colorless gummy residue. The residue was purified
by reverse-phase preparative HPLC with a gradient 10-70% CH3CN in water containing
0.05% TFA. The pure fractions mixture was evaporated in-vacuo to afford the desired
product as a colorless lline solid (347.2 mg, yield 24%). LC/MS analysis of the product
shows the desired t's mass: m/z 312 (35C1M+H), m/z 314 (37C1M+H), m/z 334
(35C1M+Na), and m/Z 336 (37C1M+Na), Calculated for C12H13ClF3NO3: 311.68
Step 2
Preparation ofracemic ethyl 3-ammo[3-chloro(trl'fluoromethoxy)phenyl]propanoate
hloride
COZEt
*HCI
CI OCF3
To a solution of ethyl 3-amino[3-chloro
(trifluoromethoxy)phenyl]propanoate TFA salt from above (347.2 mg, 0.816 mmol) in
absolute ethanol (2 mL) was added absolute ethyl alcohol saturated with dry HCl gas (5 mL)
and the reaction mixture was stirred at room temperature for 30 min. Evaporation of the
solvent uo gave a colorless gummy solid. The solid was slurried with hexanes (2X10
mL), the solvent layer was decanted off and the residue was dried in-vacuo to afford a
colorless crystalline solid (270.7 mg, yield 95%). LC-MS analysis of the solid shows the
desired product’s mass: m/z 312 +H), m/z 314 (37C1M+H), m/z 334 +Na), and m/z
336 (37C1M+Na), Calculated for C12H13ClF3NO3: 311.68 1H NMR (400 MHz, DMSO-da): 5
1.08 (t, J :71 Hz, 3H, CH3-CH2-), 3.06 (dd, J = 16.1 and 8.8 Hz, 1H, CHH-C=o-), 3.20 (dd,
J = 16.4 and 10.3 Hz, 1H, -CHH-C=O-), 4.01 (q, J = 7.1 and 2.0 Hz, 2H, CH3-CH2—), 4.72 (
m, 1H, -NH2-CH-CH2-C=O-), 7.62 (s, 1H, H-2), 7.64 (s, 1H, H-6), 7.80 (s, 1H, H-4), 8.87
(brs, 3H, -NH2.HCl). 1H NMR spectrum of the solid was consistent with the suggested
structure of the t.
Step 3
Preparation of(3S)amino[3-chloro-5—(trifluoromeihoxy)phenyl]propanoic acid
H N2
COZH
CI OCF3
Enzymatic resolution of the racemic mixture: A suspension of (rac)-ethyl 3-amino-
3-[3-chloro(trifluoromethoxy)phenyl]propanoate hloride (185.30 mg, 0.532 mmol)
in 50 mM KH2PO4 on (25.0 mL) was d at room temperature and the pH of the
aqueous layer was adjusted to pH 8.32 by the addition of 1.0 N NaOH solution and 50 mM
KH2PO4 on. Amano Lipase PS (201.0 mg) was added to above suspension and the
on mixture was stirred at room temperature for 2 days. The mixture was diluted with
MTBE (25 mL) and reaction mixture was stirred at room temperature for 1 h to extract the
(R)-ester. The MTBE layer containing the (R)-ester was discarded after analyzing by LC-MS.
Evaporation of the aqueous layer in-vacuo afforded a cream solid containing the (S)-acid as
well as Amano Lipase and Phosphate buffer salt. The above crude product was purified by
e-phase HPLC with a gradient 10-70% CH3CN in water containing 0.05% TFA to give
the desired product as a colorless glassy solid (83.1 mg). LC/MS analysis of the product
shows the desired product's mass: m/z 284 (35C1M+H), m/z 286 (37C1M+H), m/z 306
(35C1M+Na), and m/z 308 (37C1M+Na), Calculated for C10H9ClF3NO3: 283.63. The isolated
TFA salt of the (S)-acid was used as such for the preparation of the ter.
Step 4
Preparation ofethyl (3S)amino[3-chloro-5—(irifluoromeihoxy)phenyl]propanoaie
hydrochloride (Example G)
H N2
COZEt
*HCI
CI OCF3
To a solution of (S)amino[3-chloro(trifluoromethoxy)phenyl]propanoic acid
TFA salt from Step 3 above (83.0 mg, 0.209 mmol), in absolute ethanol (2.0 mL), was added
absolute ethyl alcohol saturated with dry HCl gas (5 mL) and the reaction mixture was d
at room temperature for 1 h to give a colorless solution. LC-MS analysis of the on
e after 1 h shows the desired product: ethyl (3S)—3-amino[3-chloro
(trifluoromethoxy)phenyl]propanoate’s mass: m/z 312 (35C1M+H), m/z 314 +H), m/z
334 (35C1M+Na), and m/z 336 (37C1M+Na), Calculated for C12H13ClF3NO3: 311.68. The
solvent was evaporated in-vacuo to afford the desired HCl salt of the ester (Example G) as a
colorless crystalline solid (68.70 mg, yield 94%).
Example H
Preparation of ethyl (3S)amino-3—[3—br0mo-5—
(trifluoromethoxy)phenyl] propanoate hydrochloride
H N2
COZEt
*HCI
Br OCF3
Step 1
Preparation afraceml'c ethyl 3-amm0[3-br0m0(trifluoromethoxy)phenyl]pr0pan0ate
H N2
COZEt
Br OCF3
A solution of a mixture of 3-bromo(trifluoromethoxy)benzaldehyde (1.05 g, 3.90
mmol) mono-ethyl malonate (1.31 g, 9.91 mmol) and ammonium acetate (1.68 g, 21.79
mmol) in absolute ethanol (25 mL) was heated at 80 °C for 5 h to give a colorless solution.
The reaction mixture was cooled to room ature and the solvent was evaporated in-
vacuo to give a colorless viscous liquid. The residue was partitioned between aqueous
saturated NaHCO3 solution (50 mL) and ethyl acetate (50 mL), the organic layer was
removed, dried over anhydrous sodium sulfate, filtered and evaporated in-vacuo to give a
pale yellow viscous liquid (1.40 g). LC-MS analysis of the crude t shows the desired
product's mass: m/Z 356 +H), m/z 358 (SlBrM+H), m/z 378 (79BrM+Na), and m/z 380
(SlBrM+Na), Calculated for C12H13BrF3NO3: . LC-MS also shows the uct: (E)-
ethyl 3-(3-bromo(trifluoromethoxy)phenyl)acrylate’s mass: m/Z 339 (79BrM+H), and m/Z
341 (SlBrM+H); Calculated for C12H10BrF3O3: 339.11. To a solution of the crude residue in
absolute l (2 mL) was added a 2.0 M solution of HCl in diethyl ether (15.0 mL) and the
reaction mixture was stirred at room ature for 30 min to give a pale yellow solution.
The residue after evaporation of the solvents was partitioned between water (25 mL) and
dichloromethane (25 mL). The organic and the s layers were separated. The aqueous
layer was evaporated in-vacuo to afford a colorless gummy residue. The residue was purified
by reverse-phase preparative HPLC with a nt 10-70% CH3CN in water containing
0.05% TFA. The pure fractions mixture was evaporated in-vacuo to afford the desired
product as a colorless crystalline solid (442.5 mg, yield 31%). LC/MS analysis of the product
shows the desired product's mass: m/z 356 (79BrM+H), m/z 358 (SlBrM+H), m/z 378
(79BrM+Na), and m/z 380 +Na); Calculated for C12H13BrF3NO3: 356.14.
Step 2
Preparation ofracemic ethyl 3-ammo[3-bromo(trifluoromethoxy)phenyl]propanoate
hydrochloride
COZEt
*HCI
Br OCF3
To a solution of (rac)-ethyl o[3-bromo
(trifluoromethoxy)phenyl]propanoate TFA salt from above (442.8 mg, 0.942 mmol) in
absolute ethanol (2 mL) was added a 2.0 M HCl solution in diethyl ether (10 mL) and the
reaction mixture was stirred at room temperature for 1 h. Evaporation of the solvent m-vacuo
gave a colorless gummy solid. The solid was slurried with hexanes (2X10 mL), the solvent
layer was decanted off and the e was dried in-vacuo to afford a colorless crystalline
solid (358.0 mg, yield 96%). LC-MS analysis of the solid shows the desired product’s mass:
W2 356 (79BrM+H), m/Z 358 (SlBrM+H), m/Z 378 (79BrM+Na), and W2 380 (SlBrM+Na);
Calculated for BrF3NO3: 356.14. 1H NMR (400 MHZ, g): 5 1.08 (t, J =7.1 Hz,
3H, CH3-CH2-), 3.095 (double AB q, J = 16.4 and 8.7 Hz, and J = 16.4 and 10.3 HZ, (each
1H), 2H, -CHH-C=O- and -CHH-C=O-; diastereotopic), 4.01 (dq, J = 7.1 and 2.0 Hz, 2H,
CH3-CH2—), 4.72 ( dd, J = 8.3 and 6.1 Hz, 1H, -NH2-CH-CH2-C=O-), 7.65 (appt, J = 1.7 Hz,
1H), 7.73 (appt, J = 1.7 Hz, 1H), 7.90 (appt, J = 1.5 Hz, 1H), 8.74 (brs, 3H, -NH2.HC1). 1H
NMR spectrum of the solid was consistent with the suggested structure of the product.
Step 3
Preparation of(3S)ammo[3-bromo-5—(trifluoromez‘hoxy)phenyljpropanol'c acia’
COZH
Br OCF3
Enzymatic resolution of the racemic mixture:
A suspension of (rac)—ethyl 3-amino[3-bromo
(trifluoromethoxy)phenyl]propanoate hydrochloride from step 2 above (345.40 mg, 0.880
mmol) in 50 mM KH2PO4 solution (30.0 mL) was stirred at room temperature and the pH of
the aqueous layer was adjusted to pH 8.32 by the addition of 1.0 N NaOH solution and 50
mM KH2PO4 solution. Amano Lipase PS (317.0 mg) was added to above suspension and the
reaction e was stirred at room temperature overnight. The mixture was diluted with
MTBE (25 mL) and on mixture was stirred at room temperature for 1 h to extract the
(R)-ester. The MTBE layer containing the (R)-ester was discarded after ing by LC-MS.
Evaporation of the aqueous layer in-vacuo afforded a cream solid containing the (S)-acid as
well as Amano Lipase and Phosphate buffer salt. The above crude product was d by
reverse-phase HPLC with a gradient 10-70% CH3CN in water containing 0.05% TFA to give
the desired product as a colorless glassy solid (201.3 mg). LC/MS analysis of the t
shows the desired product's mass: m/z 328 (79BrM+H), m/z 330 (SlBrM+H), m/z 350
(79BrM+Na), and m/z 352 (SIBM+Na), Calculated for C10H9BrF3NO3: . The isolated
TFA salt of the (S)-acid was used as such for the preparation of the (S)—ester.
Step 4
Preparation ofethyl (3S)amino[3-bromo-5—(trifluoromethoxy)phenyl]propanoate
hydrochloride (Example H)
H N2
COZEt
*HCI
Br OCF3
To a solution of (S)amino[3-bromo(trifluoromethoxy)phenyl]propanoic acid
TFA salt from step 3 above (201.30 mg, 0.455 mmol) in absolute ethanol (2.0 mL) was added
absolute ethyl alcohol saturated with dry HCl gas (5 mL) and the reaction mixture was stirred
at room ature for 1.5 h to give a ess solution. LC-MS analysis of the reaction
mixture after 1.5 h shows the desired product: (S)—ethyl 3-amino[3-bromo
(trifluoromethoxy)phenyl]propanoate’s mass: m/Z 356 (79BM+H), m/Z 358 +H), m/Z
378 (79BrM+Na), and m/Z 380 (SlBrM+Na); Calculated for C12H13BrF3NO3: 356.14 The
solvent was ated in-vacuo to afford the desired HCl salt of the ester (Example H) as a
colorless lline solid (171.0 mg, yield 95%).
Example I
Preparation of ethyl (3S)amino[3,5-dichlor0-phenyl]propanoate
hydrochloride
COzEt
*HCI
CI CI
Step 1
Preparation 0f(iS)amm0[3, 5-dich10r0-phenyljpropanoic acid
H N2
COZH
CI CI
Enzymatic resolution of the racemic mixture: A suspension of (rac)-ethyl 3-amino-
3-[3,5-dichlorophenyl]propanoate hydrochloride (synthesized according to procedures
described herein starting from chlorophenyl benzaldehyde) (316.0 mg, 1.058 mmol) in
50 mM KH2PO4 solution (30.0 mL) was stirred at room ature and the pH of the
aqueous layer was adjusted to pH 8.32 by the addition of 1.0 N NaOH solution and 50 mM
KH2PO4 solution. Amano Lipase PS (295.0 mg) was added to above suspension and the
reaction mixture was stirred at room temperature for 2 days. The mixture was diluted with
MTBE (25 mL) and reaction mixture was stirred at room temperature for 1 h to extract the
(R)-ester. The MTBE layer containing the (R)-ester was ded after analyzing by LC-MS.
Evaporation of the aqueous layer in-vacuo afforded a cream solid containing the (S)-acid as
well as Amano Lipase and Phosphate buffer salt. The above crude product was purified by
e-phase HPLC with a gradient 10-50% CH3CN in water containing 0.05% TFA to give
the desired product as a ess glassy solid (103.0 mg). LC/MS analysis of the product
shows the desired product's mass: m/Z 234 (35C1M+H), m/Z 236 (37C1M+H), m/Z 256
(35C1M+Na), and m/Z 258 (37C1M+Na); Calculated for C9H9C12N02: . The isolated TFA
salt of the (S)-acid was used as such for the preparation of the (S)-ester.
Step 2
Preparation ofethyl (3S)ammo[3,5-dl'chloro-phenyljpropanoate hydrochloride
(Example I)
H N2
COZEt
*HCI
CI CI
To a suspension of (S)amino[3,5-dichlorophenyl]propanoic acid from step 1
above (103.0 mg, 0.440 mmol) in absolute ethanol (2.0 mL) was added absolute ethyl
alcohol saturated with dry HCl gas (5 mL) and the reaction e was stirred at room
temperature for 1 h to give a colorless solution. LC-MS analysis of the reaction mixture after
1.5 h shows the desired product: (S)—ethyl 3-amino[3,5-dichlorophenyl]propanoate’s mass:
W2 262 (35C1M+H), m/Z 264 (37C1M+H), m/Z 284 (35C1M+Na), and W2 286 (37C1M+Na);
Calculated for CiiHi3C12N02: 262.13. The solvent was evaporated in-vacuo to afford the
desired HCl salt of the ester (Example I) as a colorless crystalline solid (131.20 mg, yield
99%).
Example J
Preparation of racemic ethyl 3-amino[3,5-bromophenyl]propanoate hydrochloride
COZEt
*HCI
Br Br
Step 1
Preparation ofracemic 3-ammo[3,5-bromo-phenyljpropanol'c acia’
COZH
Br Br
A sion of bromo-benzaldehyde (50 g, 189.39 mmol), malonic acid (39.39
g, 378.78 mmol) and ammonium e (29.19 g, 378.78 mmol) in isopropanol (350 mL)
was heated at reflux under en for 14 h to afford a thick colorless solid. The solid was
filtered hot, washed with hot isopropanol (2 X 100 mL) and dried in vacuo to give the desired
racemic t as a colorless solid (32.2 g).
Step 2
Preparation ofracemic ethyl 3-amiho[3,5-bromophehyljpropahoate hloride
H N2
COZEt
*HCI
Br Br
Absolute ethanol (500 mL, saturated with anhydrous HCl gas) was added to 3-amino-
3-(3,5-dibromo-phenyl)-propionic acid from step 1 above (32 g, 99.07 mmol) and the
reaction mixture was heated to reflux for 1.5 h to give a pale yellow solution. The solvent
was removed in vacuo to give a colorless solid. The solid was washed with hexane (2 X 100
mL). After the solvent layer was decanted off, the residue was dried in vacuo to give the
racemic amino ester hydrochloride salt (Example J) as a white solid (38 g).
Example K
Preparation of ethyl (3S)amino[3-bromo(di-fluoromethyl)phenyl]propanoate
hydrochloride
H N2
COZEt
*HCI
Br CFZH
Step 1
HO/—\OH
TsOH
1 2
3,5-dibromo benzaldehyde 1 (10 g, 37.8 mmol, 1.0 eq), ethane-1,2-diol (7.0 g,114
mmol, 3.0 eq) and TsOH (0.32g, 1.89 mmol) in toluene (20 mL) was stirred at 110 0C for 4 h.
The mixture was cooled to 23 °C and trated, ted with EtOAc. The organic layer
was washed with brine, dried (NazSO4) and concentrated to dryness to give compound 2 (9.2
g, 83.6 %) as an oil.
Step2
O O O O
BuLi
Br Br Br CH0
2 3
Compound 2 (9.2 g, 29.8 mmol, 1.0 eq) in THF (100 mL) was stirred at -78 0C. n-
BuLi (12 mL, 1.0 eq) was added se to above mixture at -78 °C. The mixture was
stirred at -78 0C for 1 h. DMF (4.56 g, 1.5 eq) was added dropwise to above mixture at -78°C.
The e was stirred at -78 °C for 3 h then warmed to 25 °C. Water was added to the
mixture and then extracted with ethyl acetate. The organic layer was washed with brine, dried
(NazSO4) and trated to dryness to give crude product. The crude product was purified
by silica gel chromatograph to give compound 3 (6.6 g, 86.8%) as a white solid.
Step 3
O O O O
DAST
Br CHO Br CF2H
3 4
Compound 3 (6.6 g, 0.026 mol) was added to DCM (50 mL), then DAST (8.3 g,
0.052 mol) was added to the solution and the reaction was stirred for 8h under N2. The
solution was washed with aq. NaHCO3, and the e was extracted with DCM. The
organic layer was washed with brine, dried (NazSO4) and concentrated. The crude material
was purified by silica gel chromatograph to give compound 4 (4.2 g, 58.3 %).
Step 4
O 0 CH0
Br CFZH
Br CFZH
4 5
Compound 4 (4.2 g, 0.026 mol) was added to a solution of THF (40 mL) and 3N HCl
(20 mL) and the reaction was stirred for 6h. The mixture was concentrated and the crude
product was purified by silica gel chromatography to give compound 5 (3.6 g, 76.9%).
Step 5
COzEt
CH0 H2N
Q HOOCCH2COOEt , NH4OAc
Br CF2H
Br CF2H
NH4OAc (0.54 g, ol), HOOCCH2COOEt (2.9 g, 0.022mol) and compound 5
(3.6 g, 0.011 mol), in EtOH (30 mL) were stirred at 70 °C for 6h. The e was
concentrated and adjusted to pH=7.5 by addition of aq. NaHCO3. The mixture was ted
with EtOAc. The organic layer was washed with brine, dried (NazSO4) and concentrated to
dryness to give oil. The crude was purified by silica gel chromatography to give compound 6
(0.6 g, 17.1 %). The (S) enantiomer, Example K, was isolated using the enzymatic resolution
procedures described above.
Example L
Preparation of ethyl (3S)amino[3-chloro(di-fluoromethyl)phenyl]propanoate
hydrochloride
H N2
COZEt
*HCI
CI CF2H
Example L was synthesized as described in the procedure for Example K, but
tuting 3-bromochloro benzaldehyde for 3,5-di-bromo benzaldehyde in Step 1.
Example 1
Preparation of (3S)(3,5-dibromophenyl)(2-(3-hydroxy-S-((5-hydroxy-1,4,5,6-
tetrahydropyrimidin-Z-yl)amino)benzamido)acetamido)propanoic acid
NYNH
HN iii/\ll/ N COZH
Br Br
Step 1
Preparation ofethyl (31$) 3-[3, 5-dibr0m-phenyl)(2-(3-hydr0xy((5-hydr0xy—1,4, 5, 6-
ydropyrimidin-Z—yl)amino)benzamid0)acetamidojpropanoaz‘e
N\ NH
”W COZEt
Br Br
A e of 2-(3-hydroxy((5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid le B) (513.80 mg, 1.667 mmol), ethyl (3S)amino-
3-(3,5-dibromophenyl) propanoate hydrochloride (the (S) ester of Example J formed via the
enzymatic lipase cleavage method) (645.80 mg, 1.667 mmol) and 1-hydroxybenzotriazole
hydrate (52.0 mg, 0.340 mmol) was dissolved in a mixture of DMF (6 mL) and
dichloromethane (6 mL) and the reaction mixture was stirred under nitrogen atmosphere for
min to give a cream suspension. Neat N,N’-diisopropylcarbodiimide (360.0 uL, 2.325
mmol) was added and the reaction e was d at room temperature under nitrogen
atmosphere overnight. The solvent was evaporated in-vacuo to give a colorless viscous
residue of the product: ethyl (3S)—3-[3,5-dibromophenyl][[2-[[3-hydroxy[(5-hydroxy-
1,4,5,6-tetrahydropyrimidinyl)amino]benzoyl]amino]acetyl]amino]propanoate. LC-MS
analysis of the crude residue shows the desired product’s mass: m/z 640 (79Br=79BrM+H), m/z
642 (79Br=81Bri\/1+H), m/Z 644 (SIBLSIBFNHH), W2 662 (79Br=79Bri\/1+Na), m/Z 664 (79Br=81BrM+Na),
and m/z 666 (SlBr=81BrM+Na); Calculated for C24H27Br2N506: 641.31. The crude residue was
used as such for the saponification reaction in Step 2.
Step 2
Preparation of (3S)(3, 5-a’l'br0m0phenyl)(2—(3-hydr0xy-5—((5-hya’r0xy-1, 4, 5, 6-
tetrahydropyrimidmyl)amin0)benzamia’o)acetamia’o)pr0panoic acia’
NYNH
HN I'll/\ll/ N COZH
Br Br
To a solution of crude ethyl (3S)[3,5-dibromophenyl][[2-[[3-hydroxy[(5-
hydroxy-1,4,5 ,6-tetrahydropyrimidinyl)amino] benzoyl] amino] acetyl] amino]propanoate
from step 1 above (1.667 mmol) in a mixture of a 1:1 mixture of acetonitrile/water (10 mL)
was added lithium ide monohydrate (350.0 mg, 8.341 mol) at room temperature and
the reaction mixture was stirred at room ature for 1 h. The mixture was neutralized
with TFA (1.0 mL in 10.0 mL CH3CN) and the mixture was evaporated in-vacuo to give a
colorless gummy residue. The above crude product was purified by reverse-phase HPLC with
a nt 10-70% CH3CN in water containing 0.05% TFA to give the desired product, after
lyophilization, as a ess lyophilized solid (Example 1) (684.2 mg, yield 67%). LC/MS
analysis of the product shows the desired product's mass: m/z 612 (79Br=79BrM+H), m/z 614
ngrM+H), and m/z 616 ngrM+H), Calculated for C22H23Br2N506: 613.26. 1H NMR
(400 MHZ, DMSO-a’6): 5 2.74 (d, J = 7.10 Hz, 2H), 3.16 (d, J = 12.23 Hz, 2H), 3.33 (d, J =
11.25 Hz, 2H), 3.86 (d, J = 5.87 Hz, 2H), 4.08 (brs, 1H), 5.14 (q, J = 7.34 Hz, 1H), 6.74
(appt, J = 2.0 Hz, 1H), 7.11 (appt, 1H), 7.14 (appt, J :17 Hz, 1H),7.56 (d, J =1.71 Hz, 2H),
7.71 (t, J = 1.7 Hz, 1H), 8.11 (s, 1H), 8.53 (d, J = 7.8 Hz, 1H), 8.64 (t, J = 6.0 Hz, 1H), 9.61
(s,1H), 10.01 (brs, 1H),12.40 (brs, 1H). 1H NMR spectrum of the sample was consistent with
the proposed structure for Example 1.
2016/069511
Example 2
Preparation of (3S)(3-bromo(trifluoromethyl)phenyl)—3-(2-(3-hydr0xy((5—
hydroxy—1,4,5,6-tetrahydropyrimidin-Z-yl)amin0)benzamid0)acetamid0)pr0pan0ic acid
NYNH O
HN u/\[O]/N COZH
Br CF3
Step 1
Preparation ofethyl (3S) 3-(3-br0m0(trifluoromethyUphenyU-S-(Z-(3-hydr0xy((5-
hydroxy-I, 4, 5, 6-z‘etrahydropyrimidin-Z—yl)ammo)benzamido)acetamid0)pr0pan0ate
NI—TNrNH o
”W COzEt
Br CF3
A mixture of 2-(3-hydroxy((5-hydroxy-l,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid (Example B) (83.0 mg, 0.269 mmol), ethyl (3S)amino
(3-bromo(trifluoromethyl)phenyl)propanoate hydrochloride (Example F) (102.0 mg, 0.271
mmol) was ved in DMF (4 mL) and dichloromethane (4 mL) to give a cream
suspension. Solid 1-hydroxybenzotriazole hydrate (8.7 mg, 0.057 mmol) was added to above
reaction mixture and the reaction mixture was stirred under nitrogen here for 10 min.
N,N'—diisopropylcarbodiimide (60.0 uL, 0.387 mmol) was added and the reaction mixture
was stirred at room temperature under nitrogen atmosphere overnight. The solvent was
evaporated in-vacuo to give a colorless gummy e of the product: ethyl (3S)—3-[3-
bromo(trifluoromethyl)phenyl][[2-[[3-hydroxy[(5-hydroxy-l,4,5,6-
tetrahydropyrimidinyl)amino]benzoyl]amino]acetyl]amino]propanoate. LC-MS analysis of
the crude residue shows the desired t’s mass: m/z 630 (79BrM+H), m/z 632 (SlBrM+H),
m/z 652 (79BrM+Na), and m/z 654 (SlBrM+Na), Calculated for C25H27BrF3N506: 630.41. The
crude e was used as such for the saponification reaction in step 2.
Step 2
Preparation 0f(31$)(3-br0m0(trifluoromethyUphenyl)(2-(3-hydr0xy((5-hydr0xy-
1, 4, 5, 6—2‘6trahya’ropyrimia’in-Z—yl)am1770)benzaml'a’o)acetamia’o)pr0panoic acia’
N\ NH
”W COZH
Br CF3
To a solution of crude ethyl (3S)—3-[3-bromo(trifluoromethyl)phenyl][[2-[[3-
hydroxy[(5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino]benzoyl]amino]acetyl]amino]propanoate from step 1 above (0.344 mmol) in a
mixture of a 1:1 mixture of acetonitrile/water (4 mL) was added lithium hydroxide
monohydrate (77.0 mg, 1.83 mol) at room temperature and the reaction mixture was stirred
at room temperature for 1.5 h. The mixture was neutralized with TFA (1.0 mL in 10.0 mL
CH3CN) and the mixture was evaporated in-vacuo to give a colorless gummy residue. The
above crude product was purified by reverse-phase HPLC with a gradient 10-60% CH3CN in
water ning 0.05% TFA to give the desired product, after lization, as a colorless
lyophilized solid (Example 2) (124.0 mg, yield 60%). LC/MS analysis of the product shows
the desired product's mass: m/Z 602 (79BrM+H), and m/Z 604 H), Calculated for
C23H23BrF3N506: . 1H NMR (400 MHz, DMSO-a’g): 5 2.78 (d, J = 7.3 Hz, 2H), 3.16
(d, J = 12.2 Hz, 2H), 3.33 (d, J = 12.2 Hz, 2H), 3.87 (d, J = 5.8 Hz, 2H), 4.08 (appt, J = 3.07
Hz, 1H), 5.23 (q, J = 7.3 Hz, 1H), 6.74 (t, J = 2.1 Hz, 1H), 7.11 (t, J = 1.8 Hz, 1H), 7.14 (t, J
= 1.8 Hz, 1H), 7.72 , 7.85 (s,1H), 7.87 (s, 1H), 8.10 (brs, 2H), 8.61 (d, J = 7.9 Hz, 1H),
8.64 (t, J = 5.9 Hz, 1H), 9.60 (s,1H), 10.02 (brs, 1H),12.41 (brs, 1H, -COOH). 1H NMR
spectrum of the t was consistent with the proposed structure for Example 2. 19F NMR
(376 MHz, DMSO-a’g): 8 -61.09 (s), and -73.82 (s).
Preparation of (3S)[3-chloro-S-(difluoromethyl)phenyl)(2-(3-hydroxy-5—((5-
hydroxy-1,4,5,6-tetrahydr0pyrimidin-Z-yl)amin0)benzamid0)acetamid0] oic acid
NYNH O
HN u/\g/N COZH
Cl CF2H
Step 1
ation 0f(3§)-ethyl 3-[3-ch10r0(dl'flu0r0methyUphenyl)(2-(3-hydr0xy-5—((5-
hydroxy-I, 4, 5, 6-z‘etrahydropyrimidin-Z—yUammo)benzaml'do)acetamidojpropanoate
N\ NH
”W COZEt
CI CFZH
A mixture of 2-(3-hydroxy((5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid (Example B) (27.0 mg; 0.088 mmol), (S)—ethyl 3-amino
(3-chloro(1-(difluoromethyl)phenyl)propanoate hydrochloride (Example L) (27.51 mg,
0.088 mmol) was ved in DMF (1 mL) and dichloromethane (1 mL) to give a colorless
suspension. Solid 1-hydroxybenzotriazole hydrate (3.0 mg, 0.020 mmol) was added to above
reaction mixture and the reaction mixture was stirred under nitrogen atmosphere for 10 min.
N,N'—diisopropylcarbodiimide (20.0 uL, 0.129 mmol) was added and the reaction mixture
was stirred at room temperature under nitrogen atmosphere overnight. The solvent was
evaporated in-vacuo to give a pale yellow viscous residue of the product: (3S)—ethyl 3-(3-
chloro(difluoromethyl)phenyl)(2-(3-hydroxy((5-hydroxy-1,4,5,6-
tetrahydropyrimidinyl)amino)benzamido)acetamido)propanoate. LC-MS analysis of the
crude residue shows the desired product’s mass: m/z 568 (35C1M+H), m/z 570 +H), m/z
590 +Na), and m/z 592 (37C1M+Na); Calculated for C25H28C1F2N506: 567.97. The crude
residue was used as such for the saponification reaction in Step 2.
WO 17538
Step 2
Preparation 0f(31$)[3-ch10r0(difluoromethyUphenyZ)(2—(3-hydr0xy((5-hya’r0xy-
1,4,5, 6-z‘etrahydropyrimidm-Z-yl)ammo)benzaml'a’o)acetamia’ojpropanoic acia’
YNH 0
HN ”WN COZH
Cl CF2H
To a suspension of crude (3S)—ethyl 3-(3-chloro(difluoromethyl)phenyl)(2-(3-
hydroxy-5 -((5-hydroxy-l ,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetamido)propanoate from step 1 above (0.088 mmol) in a mixture of a
1:1 mixture of acetonitrile/water (4 mL) was added lithium ide drate (20.0 mg,
0.477 mol) at room temperature and the reaction mixture was stirred at room temperature
overnight. The mixture was lized with TFA (1 mL in 10.0 mL CH3CN) and the mixture
was evaporated uo to give a yellow gummy residue. The above crude product was
purified by reverse-phase HPLC with a gradient 10-60% CH3CN in water ning 0.05%
TFA to give the desired product, after lyophilization, as a colorless lyophilized solid
(Example 3) (41.2 mg, yield 87%). LC/MS analysis of the product shows the desired
product's mass: m/Z 540 (35C1M+H) and m/z 542 (37C1M+H), Calculated for C23H24ClF2N506:
539.92. 1H NMR (400 MHz, DMSO-a’g): 5 2.76 (d, J = 7.34 Hz, 2H, -CH2-COOH), 3.16 (d, J
= 12.23 Hz, 2H), 3.33 (d, J = 10.76 Hz, 2H), 3.87 (dd/m, 3H), 4.08 (t, J = 3.18 Hz, 1H), 5.21
(q, J = 7.34 Hz, 1H, -NH-CH-CH2-COOH), 6.74 (t, J = 2.08 Hz, 1H), 7.03 (s, 1H), 7.11 (t, J
=1.71 Hz, 1H), 7.13 (apt, 1H), 7.53 (brs, 1H), 7.59 (s, 1H), 8.14 (brs, 2H), 8.63 (t, J = 5.87
Hz, 1H), 9.67 (brs,lH), 10.02 (brs, 1H), 12.44 (brs, 1H, -COOH). 1H NMR spectrum of the
product was consistent with the proposed structure for Example 3. 19F NMR (376 MHz,
DMSO-a’g): 6 -74. 12 (s), and -110.28 (d, J = 56.0 Hz).
Example 4
Preparation of (3S)[3-br0mo(difluor0methyl)phenyl)—3—(2-(3-hydr0xy((5-
hydroxy-1,4,5,6-tetrahydr0pyrimidin-Z-yl)amin0)benzamid0)acetamid0] propanoic acid
NYNH O
HN u/\g/N COZH
Br CF2H
Step 1
ation 0f(3§)-ethyl 3-[3-br0m0(diflu0r0methyUphenyl)(2-(3-hydr0xy((5-
hydroxy-I, 4, 5, 6—z‘etrahydropyrimidin-Z—yUammo)benzaml'do)acetamidojpropanoate
N\ NH
”W COZEt
Br CFZH
A e of 2-(3-hydroxy((5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid (Example B) (25.0 mg; 0.081 mmol), ethyl (3S)amino
(3-bromo(1-(difluoromethyl)phenyl)propanoate hloride (Example K) (29.08 mg,
0.081 mmol) was dissolved in DMF (1 mL) and romethane (1 mL) to give a colorless
suspension. Solid 1-hydroxybenzotriazole hydrate (3.0 mg, 0.020 mmol) was added to above
reaction mixture and the reaction mixture was d under nitrogen atmosphere for 10 min.
N,N'—diisopropylcarbodiimide (20.0 uL, 0.129 mmol) was added and the reaction mixture
was stirred at room temperature under nitrogen atmosphere overnight. The solvent was
evaporated in-vacuo to give a yellow orange s residue of the product: (3S)—ethyl 3-(3-
bromo-S-(difluoromethyl)phenyl)(2-(3-hydroxy-5 -((5-hydroxy-1,4,5 ,6-
tetrahydropyrimidinyl)amino)benzamido)acetamido)propanoate. LC-MS analysis of the
crude residue shows the desired product’s mass: m/z 612 (79BrM+H), m/z 614 (SlBrM+H), m/z
634 (79BrM+Na), and m/z 636 (SlBrM+Na); Calculated for C25H28BrF2N506; 612.42. The crude
residue will be used as such for the saponification reaction in Step 2.
WO 17538
Step 2
Preparation of(31$)[3-br0m0-5—(dij‘luoromethyUphenyl)(2-(3-hya’r0xy((5-hya’r0xy-
1, 4, 5, 6—z‘etrahydropyrimidm-Z-yl)ammo)benzaml'a’o)acetamia’ojpropanoic acia’
NYNH
HN ”WN COZH
Br CF2H
To a suspension of crude ethyl -(3-bromo(difluoromethyl)phenyl)(2-(3-
hydroxy-5 -((5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetamido)propanoate from step 1 above (0.080 mmol) in a e of a
1:1 mixture of acetonitrile/water (4 mL) was added lithium hydroxide monohydrate (18.0 mg,
0.429 mol) at room temperature and the reaction mixture was stirred at room temperature
overnight. The mixture was lized with TFA (500 uL in 5.0 mL CH3CN) and the
mixture was evaporated in-vacuo to give a yellow gummy residue. The above crude product
was purified by reverse-phase HPLC with a gradient 10-60% CH3CN in water containing
0.05% TFA to give the desired product, after lyophilization, as a colorless lyophilized solid
(Example 4) (33.4 mg, yield 71%). LC/MS analysis of the product shows the desired
product's mass: m/Z 584 (79BrM+H), m/Z 586 (SlBrM+H), m/Z 606 (79BrM+Na), and m/Z 608
(SlBrM+Na), Calculated for C23H24BI'F2N506: 584.37. 1H NMR (400 MHz, DMSO-a’a): 5 2.76
(d, J = 7.34 Hz, 2H, -CH2-COOH), 3.16 (d, J = 12.47 Hz, 2H), 3.33 (d, J = 10.76 Hz, 2H),
3.87 (dd/m, 3H), 4.08 (t, J = 2.90 Hz, 1H), 5.21 (q, J = 7.34 Hz, 1H, -NH-CH-CH2-COOH),
6.74 (t, J = 2.08 Hz, 1H), 7.02 (appt, 1H), 7.14 (appt, 1H), 7.56 (s, 1H), 7.66 (s, 1H), 7.72 (s,
1H), 8.13 (brs, 1H), 8.58 (s, 1H), 8.62 (t, J = 5.99 Hz, 1H), 9.65 (brs,1H), 10.02 (brs, 1H),
12.40 (brs, 1H, -COOH). 1H NMR spectrum of the t was consistent with the proposed
structure for Example 4. 19F NMR (376 MHz, DMSO-a’g): 6 -73.81 (s), and -110.23 (d, J =
56.0 Hz).
Example 5
Preparation of (3S)[3-chloro—S-(trifluoromethyl)phenyl)(2-(3-hydr0xy((5-
hydroxy-1,4,5,6-tetrahydr0pyrimidin-Z-yl)amin0)benzamid0)acetamid0] propanoic acid
NYNH O
HN u/\[O]/N COZH
Cl CF3
Step 1
Preparation 0f(3§)-ethyl 3-[3-ch10r0(tifluoromethyUphenyl)(2—(3-hydr0xy((5-
hydroxy-I, 4, 5, 6—z‘etrahydropyrimidin-Z—yUammo)benzaml'do)acetamidojpropanoate
N\ NH
”AW COzEt
CI CF3
A mixture of ydroxy((5-hydroxy-l,4,5,6-tetrahydropyrimidin
no)benzamido)acetic acid (Example B) (43.0 mg; 0.139 mmol), ethyl (3S)amino
(3-chloro(l-(trifluoromethyl)phenyl)propanoate hydrochloride (Example E) (46.33 mg,
0.139 mmol) was dissolved in DMF (1 mL) and dichloromethane (1 mL) to give a colorless
suspension. Solid oxybenzotriazole hydrate (4.40 mg, 0.029 mmol) was added to
above reaction mixture and the reaction mixture was stirred under en atmosphere for 10
min. N,N'—diisopropylcarbodiimide (32.0 uL, 0.207 mmol) was added and the reaction
mixture was stirred at room temperature under nitrogen here overnight. The solvent
was evaporated in-vacuo to give a colorless gummy residue of the product: (3S)—ethyl 3-(3-
chloro(trifluoromethyl)phenyl)—3-(2-(3 -hydroxy((5 -hydroxy- 1 ,4,5,6-
tetrahydropyrimidinyl)amino)benzamido)acetamido)propanoate. LC-MS analysis of the
crude residue shows the desired product’s mass: m/Z 586 (35C1M+H), m/z 588 (37C1M+H), m/z
608 (35C1M+Na), and m/z 610 (37C1M+Na); Calculated for C25H27C1F3N506: 585.96. The crude
e was used as such for the saponification reaction in step 2.
Step 2
Preparation )[3-chlor0(triflu0r0methyUphenyl)(2-(3-hydr0xy-5—((5-hya’r0xy-
1, 4, 5, 6-z‘etrahydropyrimidm-Z-yl)ammo)benzaml'a’o)acetamia’ojpropanoic acia’
YNH 0
HN ”WN COZH
Cl CF3
To a sion of crude ethyl (3S)—3-(3-chloro(tiifluoromethyl)phenyl)(2-(3-
hydroxy-5 -((5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetamido)propanoate from step 1 above (0.139 mmol) in a mixture of a
1:1 mixture of acetonitrile/water (4 mL) was added lithium hydroxide monohydrate (30.0 mg,
0.715 mol) at room temperature and the reaction mixture was stirred at room ature
overnight. The mixture was neutralized with TFA (1 mL in 10.0 mL CH3CN) and the mixture
was evaporated in-vacuo to give a cream gummy residue. The above crude product was
purified by reverse-phase HPLC with a gradient 10-60% CH3CN in water containing 0.05%
TFA to give the desired product, after lization, as a colorless lyophilized solid
(Example 5) (63.2 mg, yield 81%)). LC/MS analysis of the product shows the desired
t's mass: m/z 558 (35C1M+H) and m/z 560 (37C1M+H), Calculated for C23H23ClF3N506:
. 1H NMR (400 MHZ, DMSO-a’6): 5 2.79 (d, J = 7.09 Hz, 2H, -CH2-COOH), 3.16 (d, J
= 11.98 Hz, 2H), 3.33 (d, J = 11.00 Hz, 2H), 3.87 (d, J = 5.87 Hz, 2H), 4.08 (t, J = 3.18 Hz,
1H), 5.24 (q, J = 7.09 Hz, 1H, -NH-CH-CH2-COOH), 6.75 (s, 1H), 7.11 (s, 1H), 7.13 (t, J =
2.00 Hz, 1H), 7.69 (s, 1H), 7.74 (s, 1H), 8.12 (brs, 1H), 8.61 (d, J = 8.07 Hz, 1H), 8.65 (t, J =
5.75 Hz, 1H), 9.66 (brs,1H), 10.02 (brs, 1H), 12.43 (brs, 1H, -COOH). 1H NMR spectrum of
the product was consistent with the proposed structure for Example 5. 19F NMR (376 MHz,
DMSO-a’g): 8 -61.11 (s), and -73.94 (s).
Example 6
Preparation of (3S)[3-bromo-5—ch10r0-phenyl)(2-(3-hydr0xy—5-((5—hydroxy-1,4,5,6-
tetrahydr0pyrimidin-Z-yl)amino)benzamid0)acetamid0]propanoic acid
N\ NH
”W COZH
Cl Br
Step 1
Preparation of(359-62102] 3-[3-br0m0ch10r0-phenyl)(2-(3-hydr0xy—5-((5-hydr0xy-
1, 4, 5, mhydropyrimidin-Z—yUammo)benzamid0)acetamidojpropanoate
N\ NH
”W COZEt
Cl Br
A mixture of 2-(3-hydroxy((5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid (Example B) (82.0 mg; 0.266 mmol), ethyl (3S)amino
(3-bromochloro-phenyl)propanoate hydrochloride ( sized as in the methods
described above starting from 3-bromochloro benzaldehyde) (91.40 mg, 0.266 mmol) was
dissolved in DMF (1.5 mL) and dichloromethane (1.5 mL) to give a cream-orange
suspension. Solid 1-hydroxybenzotriazole hydrate (9.0 mg, 0.059 mmol) was added to above
reaction e and the reaction mixture was stirred under en atmosphere for 10 min.
N,N'—diisopropylcarbodiimide (60.0 uL, 0.387 mmol) was added and the reaction mixture
was stirred at room temperature under nitrogen atmosphere overnight. The solvent was
evaporated in-vacuo to give a dirty yellow-orange gummy residue of the product: thyl
3-(3-bromochloro-phenyl)(2-(3-hydroxy((5-hydroxy-1,4,5,6-tetrahydropyrimidin
no)benzamido)acetamido)propanoate. LC-MS analysis of the crude residue shows the
desired product’s mass: m/z 596 (35C1=79BFM+H), m/z 598 (35cm1Br=37C1=79BrM+H), m/z 600
(37C1,81BrM+H)3 m/Z 618 (35C1,79BrM+Na)3 m/Z 620 (35Cl,81Br,37Cl,79BrM+Na) and m/Z 622
(37C1=SlBrM+Na), Calculated for C24H27BrClN506:596.86. The crude residue was used as such
for the saponification reaction in Step 2.
Step 2
Preparation )[3-br0m0-5—ch10r0-phenyl)(2—(3-hydr0xy—5-((5-hydr0xy-1, 4, 5, 6-
tetrahya’ropyrimidin-Z—yUammo)benzamia’o)acetamia’ojpropanoic acia’
NYNH
HN Iii/YN COZH
Cl Br
To a suspension of crude ethyl (3S)(3-bromochloro-phenyl)(2-(3-hydroxy
droxy-1,4,5,6-tetrahydropyrimidinyl)amino)benzamido)acetamido)propanoate from
step 1 above (0.266 mmol) in a mixture of a 1:1 mixture of acetonitrile/water (4 mL) was
added lithium hydroxide drate (56.0 mg, 0.1.334 mol) at room temperature and the
reaction mixture was d at room temperature for 4 h to give an orange-yellow solution.
The mixture was neutralized with TFA (1 mL in 10.0 mL CH3CN) and the mixture was
evaporated in-vacuo to give a colorless gummy residue. The above crude product was
purified by reverse-phase HPLC with a gradient 10-60% CH3CN in water containing 0.05%
TFA to give the desired product, after lyophilization, as a colorless lyophilized solid
(Example 6) (88.7 mg, yield 59%). LC/MS analysis of the product shows the desired
product's mass: m/Z 568 79BM+H), m/z 570 (35C1=81Br=37C1=79Br1\/I+H), and m/z 572
SlBrM+H), Calculated for C22H23BI'ClN506: 568.80. 1H NMR (400 MHz, DMSO-a’a): 5
2.74 (d, J = 7.34 Hz, 2H, -CH2—COOH), 3.16 (d, J = 12.23 Hz, 2H), 3.34 (d, J = 11.74 Hz,
2H), 3.87 (d, J = 5.87 Hz, 2H), 4.08 (appt, 1H), 5.15 (q, J = 7.42 Hz, 1H, -NH-CH—CH2-
COOH), 6.75 (t, J = 1.96 Hz, 1H), 7.11 (s, 1H), 7.14 (s, 1H), 7.43 (s, 1H), 7.52 (s, 1H), 7.60
(s, 1H), 8.13 (brs, 1H), 8.84 (d, J = 8.07 Hz, 1H), 8.64 (t, J = 5.87 Hz, 1H), 9.65 (brs,1H),
.03 (brs, 1H), 12.45 (brs, 1H, -COOH). 1H NMR spectrum of the product was consistent
with the proposed structure for Example 6.
Example 7
Preparation of (3S)[3-chloro-5—(trifluoromethyl)phenyl]-3—[[2-[[5-[(5—hydroxy—1,4,5,6-
tetrahydropyrimidin-Z-yl)amino]pyridine-S-carbonyl]amino]acetyl]amin0]pr0pan0ic
acid
HN N
\ N CO H
| HW 2
Cl 01:3
Step 1
Preparation ofethyl (3S)[3-ch10r0(trifluoromethyUphenylj[[2-[[5-[(5—hydr0xy—
1,4,5, 6-tetrahydropyrimidin-Z—yl)aminojpyridme
carbonyljaml'nojacelyljaml'nojpropanoate
N NH
Y 0
HN N
\ N CO Et
I/ 93 2
CI CF3
A mixture of 2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidinyl)amino]pyridine
carbonyl]amino]acetic acid (Example D) (56.0 mg,0.115 mmol), ethyl (3S)amino[3-
chloro(trifluoromethyl)phenyl)propanoate hydrochloride le E) (38.05 mg, 0.115
mmol) and 1-hydroxybenzotriazole hydrate (3.5 mg, 0.023 mmol) was dissolved in DMF (3
mL) and dichloromethane (3 mL) and stirred at room temperature under nitrogen atmosphere
for 10 min to give a cream suspension. N,N'—diisopropylcarbodiimide (25 uL, 0.161 mmol)
was added and the reaction mixture was stirred at room temperature under en
atmosphere overnight. The solvent was evaporated uo to give a colorless gummy solid
of the intermediate product: ethyl (3S)—3-[3-chloro(trifluoromethyl)phenyl][[2-[[5-[(5-
hydroxy-1,4,5,6-tetrahydropyrimidinyl)amino]pyridine
carbonyl]amino]acetyl]amino]propanoate. LC-MS analysis of the crude e shows the
desired product’s mass: m/z 571 +H), m/z 573 (37C1M+H); m/z 593 (35C1M+Na), and m/z
595 (37C1M+Na); Calculated for C24H26ClF3N605: 570.95. The crude residue was used as such
for the saponification reaction in Step 2.
Step 2
Preparation 0f(31$)[3-ch10r0(trifluoromethyUphenylj[[2—[[5-[(5-hydr0xy—1, 4, 5, 6-
z‘etrahydropyrl'mia’m-Z-yl)ammojpyridme-S-carbonyljammojacetyljammojpropanoic acia’
\ N
I/ Q? COZH
Cl CF3
To a suspension of ethyl (3S)—3-[3-chloro(trifluoromethyl)phenyl][[2-[[5-[(5-
hydroxy-1,4,5 ,6-tetrahydropyrimidinyl)amino]pyridine
carbonyl]amino]acetyl]amino]propanoate from step 1 above (0.115 mmol) in a e of a
1:1 mixture of acetonitrile/water (4 mL) was added lithium hydroxide monohydrate (25.0 mg,
0.596 mmol) and the reaction mixture was d at room temperature for 1 h. The reaction
mixture was neutralized with TFA (250 uL in 5 mL CH3CN) and the mixture was ated
in-vacuo to give a colorless residue. The crude product was purified by e-phase HPLC
with a gradient 10-70% CH3CN in water containing 0.05% TFA to give the desired product,
after lyophilization, as a colorless lyophilized solid le 7) (46.4 mg, yield 74%).
LC/MS analysis of the product shows the desired product’s mass: m/z 558 (35C1M+H), and m/z
560 (37C1M+H); Calculated for C22H22ClF3N605: 542.90. 1H NMR (400 MHz, DMSO-a’a): 5
2.79 (d, J = 7.34 Hz, 2H, -CH2—COOH), 3.17 (d, J = 11.98 Hz, 2H), 3.36 (d, J = 11.98 Hz,
2H), 3.94 (d, J = 5.87 Hz, 2H), 4.11 (brt, 1H), 5.25 (q, J = 7.09 Hz, 1H, -NH-CH-CH2-
COOH), 7.70 (s, 1H), 7.75 (s, 2H), 8.02 (s, 1H), 8.43 (brs, 2H), 8.59 (brs, 1H), 8.66 (d, J =
8.07 Hz, 1H), 8.90 (brs, 1H), 9.04 (t, J = 5.75 Hz, 1H), 9.92 (s,1H), 12.41 (brs, 1H, -COOH).
1H NMR spectrum of the product was consistent with the proposed structure for Example 7.
19F NMR (376 MHz, DMSO-a’g): 8 -61.12 (s), and -74.31 (s).
Example 8
Preparation of (3S)(3-bromo-S-chloro—phenyl)—3—[[2-[[5—[(5-hydr0xy-1,4,5,6—
tetrahydropyrimidin-Z-yl)amino]pyridine-S-carbonyl]amino]acetyl]amin0]pr0pan0ic
acid
HN N
Cl Br
Step 1
Preparation ofethyl (3S)(3-br0m00ch10r0-phenyl)[[2-[[5-[(5—hydr0xy—1,4, 5, 6-
retrahydropyrl'midm-Z-yl)amino]pyridme-S-carbonyljammojacelyljammojpropanoaz‘e
\ N COEt
I/ We 2
Cl Br
A mixture of 2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidinyl)amino]pyridine
carbonyl]amino]acetic acid (Example D) (80.0 mg,0.164 mmol), ethyl -amino[3-
bromochlorophenyl)propanoate hydrochloride (synthesized as in the s bed
above starting from 3-bromochloro benzaldehyde) (56.15 mg, 0.164 mmol) and 1-
hydroxybenzotriazole hydrate (6.0 mg, 0.039 mmol) was dissolved in DMF (3 mL) and
dichloromethane (3 mL) and stirred at room temperature under nitrogen atmosphere for 10
min to give a cream suspension. N,N'—diisopropylcarbodiimide (35.0 uL, 0.226 mmol) was
added and the reaction mixture was stirred at room temperature under nitrogen atmosphere
overnight. The solvent was evaporated in-vacuo to give a colorless solid of the intermediate
product: ethyl (3S)[3-bromochloro-phenyl][[2-[[5-[(5-hydroxy-1,4,5,6-
tetrahydropyrimidinyl)amino]pyridinecarbonyl]amino]acetyl] amino]propanoate. LC-
MS is of the crude residue shows the desired product’s mass: m/z 581 79BFM+H),
m/Z 583 (35Cl,81Br,37Cl,79BrM+H)3 m/Z 585 (37Cl,81BrM+H)3 m/Z 603 (35C1=79BrM+Na), m/Z 605
(35C1=81Br=37C1=79Br1\/I+Na) and m/z 607 (37C1=81BrM+Na); Calculated for C23H26lBrClN6Os; .
The crude residue was used as such for the saponification reaction in Step 2.
Step 2
Preparation of (3S)(3-br0m0-5—chlar0-phenyl)[[2-[[5—[(5-hydr0xy-1, 4, 5, 6-
z‘etrahydropyrl'midm-Z-yl)ammojpyridme-S-carbonyljammojacetyljammojpropanoic acid
HN PrN \
I 004*
Cl Br
To a suspension of ethyl (3S)—3-[3-bromochloro-phenyl][[2-[[5-[(5-hydroxy-
1,4,5,6-tetrahydropyrimidinyl)amino]pyridinecarbonyl]amino]
acetyl]amino]propanoate from step 1 above (0.164 mmol) in a mixture of a 1:1 e of
acetonitrile/water (6 mL) was added m hydroxide monohydrate (35.0 mg, 0.834 mmol)
and the reaction mixture was stirred at room temperature for 2 h. The on mixture was
neutralized with TFA (250 uL in 5 mL CH3CN) and the mixture was evaporated in-vacuo to
give a colorless crystalline solid. The crude product was purified by reverse-phase HPLC
with a gradient 10-50% CH3CN in water containing 0.05% TFA to give the desired product,
after lyophilization, as a colorless lyophilized solid (Example 8) (55.0 mg, yield 61%).
LC/MS analysis of the product shows the desired product's mass: m/z 553 (35C1=79BTM+H), m/z
555 (35C1=81Br=37C1=79BrM+H), and m/z 557 (37C1=81BFM+H); Calculated for C21H22BrClN605:
553.79. 1H NMR (400 MHz, DMSO-dg): 5 2.75 (d, J = 7.34 Hz, 2H, OOH), 3.17 (d, J
= 12.23 Hz, 2H), 3.36 (d, J = 11.00 Hz, 2H), 3.94 (d, J = 5.62 Hz, 2H), 4.11 (t,J = 3.20 Hz,
1H), 5.16 (q, J = 7.42 Hz, 1H, -NH-CH-CH2-COOH), 7.44 (t, J = 1.47 Hz, 1H), 7.53 (apt,
1H), 7.60 (t, J = 1.83 Hz,1H), 8.03 (t, J = 2.08 Hz, 1H), 8.42 (brs, 2H), 8.59 (d, J =7.82 Hz,
1H), 8.90 (brs, 1H), 9.03 (t, J = 5.87 Hz, 1H), 9.90 (s,1H), 12.42 (brs, 1H, -COOH). 1H NMR
spectrum of the product was consistent with the proposed structure for Example 8.
Example 9
Preparation of (3S) [3-brom0-5—(trifluoromethyl)phenyl] [ [2- [ [5- droxy-
1,4,5,6-tetrahydr0pyrimidin-2—yl)amino]pyridine
carbonyl]amin0]acetyl]amin0]pr0pan0ic acid
| HAWN \ N CO H2
Br CF3
Step 1
Preparation ofethyl (35)[3-br0m0-5—(trifluoromethyUphenylj[[2-[[5-[(5—hydr0xy—
1, 4, 5, 6—2‘6trahydropyrimidin-Z—yl)aminojpyridme
carbonyljaml'nojacelyljaml'nojpropanoate
N NH
\Y 0
HN N
\ N CO Et
l/ Hfir 2
Br CF3
A e of 2-[[5-[(5-hydroxy-1,4,5,6-tetrahydropyrimidinyl)amino]pyridine
yl]amino]acetic acid (Example D) (64.0 mg,0.131 mmol), ethyl (3S)amino(3-
bromo(trifluoromethyl)phenyl)propanoate hydrochloride (Example F) (49.31 mg, 0.131
mmol) and 1-hydroxybenzotriazole hydrate (5.0 mg, 0.033 mmol) was dissolved in DMF (3
mL) and dichloromethane (3 mL) and stirred at room temperature under nitrogen atmosphere
for 10 min to give a cream suspension. N,N'—diisopropylcarbodiimide (30.0 uL, 0.194 mmol)
was added and the reaction mixture was stirred at room temperature under nitrogen
atmosphere overnight. The solvent was evaporated in-vacuo to give a colorless gummy solid
of the ediate product: ethyl (359[3-bromo(trifluoromethyl)phenyl][[2-[[5-[(5-
y-1,4,5 ,6-tetrahydropyrimidinyl)amino] pyridine-3 -carbonyl] amino]
acetyl]amino]propanoate. LC-MS analysis of the crude e shows the desired product’s
mass: m/Z 615 (79BrM+H), m/Z 617 (SlBrM+H), m/Z 637 (79BrM+Na), and m/Z 639 (SlBrM+Na);
Calculated for BrF3N605: 615.40. The crude residue was used as such for the
saponification on in Step 2.
Step2
Preparation of (3S)[3-br0m0-5—(trifluoromethyUphenyl][[2—[[5-[(5-hydr0xy—1, 4, 5, 6-
hya’ropyrl'mia’m-Z-yl)ammojpyria’me-S-carbonyljammojacetyljammojpropanoic acia’
NI—jN/NH O
\ 01N I/ COZH
Br CF3
To a suspension of ethyl (3S)[3-bromo(trifluoromethyl)phenyl][[2-[[5-[(5-
hydroxy-1,4,5 ,6-tetrahydropyrimidinyl)amino] pyridine-3 -carbonyl] amino]
acetyl]amino]propanoate from step 1 above (0.131 mmol) in a mixture of a 1:1 mixture of
acetonitrile/water (6 mL) was added lithium hydroxide monohydrate (30.0 mg, 0.715 mmol)
and the reaction e was stirred at room temperature for 1 h. The reaction mixture was
neutralized with TFA (250 uL in 5 mL CH3CN) and the mixture was evaporated in-vacuo to
give a colorless crystalline solid. The crude t was purified by reverse-phase HPLC
with a gradient 10-60% CH3CN in water containing 0.05% TFA to give the desired product,
after lyophilization, as a colorless lyophilized solid (Example 9) (69.6 mg, yield 90%).
LC/MS analysis of the product shows the desired product's mass: m/z 587 (79BrM+H), m/z 589
+H), m/z 609 (79BrM+Na), and m/z 611 (SlBrM+Na), Calculated for C22H22BrF3N605:
587.35. 1H NMR (400 MHz, DMSO-a’g): 5 2.79 (d, J = 7.34 Hz, 2H, -CH2—COOH), 3.17 (d, J
= 12.47 Hz, 2H), 3.36 (d, J = 11.74 Hz, 2H), 3.94 (d, J = 5.87 Hz, 2H), 4.11 (brt, 1H), 5.24
(q, J = 7.25 Hz, 1H, -NH-CH-CH2-COOH), 7.73 (s, 1H), 7.85 (s, 1H), 8.02 (t, J =2.08 Hz,
1H), 8.43 (brs, 2H), 8.59 (d, J = 1.96 Hz, 1H), 8.66 (d, J = 8.07 Hz, 1H), 8.90 (s, 1H), 9.05 (t,
J = 5.75 Hz, 1H), 9.92 (s,1H), 12.43 (brs, 1H, -COOH). 1H NMR spectrum of the product
was consistent with the proposed structure for Example 9. 19F NMR (376 MHz, DMSO-a’a):
6 -61.10 (s), and -74.47 (s).
e 10
Preparation of (3S)[3,5-bis(trifluoromethyl)phenyl)(2-(3-hydr0xy((5-hydroxy-
1,4,5,6-tetrahydropyrimidin-Z-yl)amin0)benzamido)acetamid0] propanoic acid
N\ NH
”W COZH
F3C CF3
Step 1
Preparation ofethyl -[3,5-bis(tifluoromethyUphenyl)(2-(3-hydr0xy—5-((5-hydr0xy-
1, 4, 5, 6—z‘elmhydropyrimidin-Z—yUammo)benzamid0)acetamidojpropanoate
N\ NH
NAH/ COzEt
F3C CF3
A mixture of 2-(3-hydroxy((5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid (Example B) (65.50 mg; 0.212 mmol), ethyl (3S)amino
(3,5-bis(1-(trifluoromethyl)phenyl)propanoate hydrochloride (synthesized as in the methods
described above starting from 3,5-bis romethyl benzaldehyde) (77.70 mg, 0.212 mmol)
was dissolved in DMF (2 mL) and dichloromethane (2 mL) to give a ess suspension.
Solid 1-hydroxybenzotriazole hydrate (7.0 mg, 0.046 mmol) was added to above on
mixture and the reaction mixture was stirred under nitrogen atmosphere for 10 min. N,N'—
diisopropylcarbodiimide (45.0 uL, 0.291 mmol) was added and the reaction mixture was
stirred at room temperature under nitrogen atmosphere overnight. The solvent was evaporated
m-vacuo to give a colorless gummy residue of the product: ethyl (3S)(3,5-
bis(trifluoromethyl)phenyl)(2-(3 -hydroxy((5 -hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetamido)propanoate. LC-MS analysis of the crude residue shows the
desired product’s mass: m/z 620 (M+H), and m/z 642 (M+Na); Calculated for C26H27F6N506:
619.51. The crude residue was used as such for the saponification reaction in Step 2.
Step 2
Preparation of(31$)[3, 5-bis (trifluoromethyl)phenyl)(2-(3-hya’r0xy((5—hya’r0xy-
1,4,5, 6—z‘etrahydropyrimidm-Z-yl)ammo)benzaml'a’o)acetamia’ojpropanoic acia’
NYNH
HN ”WN COZH
F3C CF3
To a suspension of crude ethyl (3S)—3-(3,5-bis(trifluoromethyl)phenyl)(2-(3-
hydroxy-5 -((5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetamido)propanoate from step 1 above (0.212 mmol) in a mixture of a
1:1 mixture of acetonitrile/water (6 mL) was added lithium hydroxide drate (45.0 mg,
1.072 mol) at room ature and the reaction mixture was stirred at room temperature
for 1 h. The e was neutralized with TFA (250 uL in 5.0 mL CH3CN) and the mixture
was evaporated in-vacuo to give a colorless gummy residue. The above crude product was
purified by reverse-phase HPLC with a gradient 10-60% CH3CN in water containing 0.05%
TFA to give the d product, after lyophilization, as a colorless lyophilized solid
(Example 10) (69.2 mg, yield 55%). LC/MS analysis of the product shows the desired
product's mass: m/Z 592 (M+H) and m/z 614 (M+Na), Calculated for C24H23F6N506: 591.46.
1H NMR (400 MHz, DMSO-a’g): 5 2.83 (d, J = 7.34 Hz, 2H, -CH2-COOH), 3.15 (d, J = 12.23
Hz, 2H), 3.33 (brd, J = 10.67 Hz, 2H), 3.87 (d, J = 5.62 Hz, 2H), 4.08 (d,J = 3.18 Hz, 1H),
.33 (q, J = 7.09 Hz, 1H, -NH-CH-CH2-COOH), 6.74 (t, J = 2.08 Hz, 1H), 7.10 (appt, 1H),
7.13 (appt, 1H), 7.85-8.22 (m, 4H), 8.48-8.93 (m, 2H), 9.64 , 10.02 (brs, 1H), 12.45
(brs, 1H, -COOH). 1H NMR spectrum of the product was consistent with the proposed
ure for Example 10. 19F NMR (376 MHz, DMSO-a’g): 6 -61. 14 (s),and -73.73 (s).
Example 11
Preparation of (3S)[3-bromo-S-methyl-phenyl)(2-(3-hydr0xy((5-hydroxy-
1,4,5,6-tetrahydropyrimidin-Z-yl)amin0)benzamid0)acetamid0)pr0pan0ic acid
NYNH O
HN MEN COZH
Br CH3
Step 1
Preparation ofmethyl (3S) 3-[3-br0m0methyl-phenyl)(2-(3-hydr0xy((5-hydr0xy-
1, 4, 5, 6-z‘elmhydropyrimidin-Z—yUammo)benzamid0)acetamidojpropanoate
N\ NH
”W COzMe
Br CH3
A mixture of ydroxy((5-hydroxy-l,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid (Example B) (94.70 mg, 0.307 mmol), methyl -amino-
3-(3-bromomethyl-phenyl)propanoate hydrochloride esized as in the methods
described above starting from 3-bromomethyl benzaldehyde) (94.80 mg, 0.307 mmol) was
dissolved in DMF (2 mL) and dichloromethane (2 mL) to give a cream suspension. Solid 1-
hydroxybenzotriazole hydrate (10.20 mg, 0.067 mmol) was added to above reaction mixture
and the reaction mixture was stirred under nitrogen atmosphere for 10 min. N,N'—
diisopropylcarbodiimide (70 uL, 0.452 mmol) was added and the reaction mixture was stirred
at room temperature under nitrogen atmosphere ght. The solvent was evaporated in-
vacuo to give a colorless gummy residue of the product: methyl (3S)—3-[3-bromomethyl-
phenyl][[2-[[3-hydroxy[(5-hydroxy-l,4,5,6-tetrahydropy1imidin
yl)amino]benzoyl]amino]acetyl]amino]propanoate. LC-MS analysis of the crude residue
shows the d product’s mass: m/z 562 (79BrM+H), m/z 564 (SlBrM+H), m/z 584
(79BrM+Na), and m/z 586 (SlBrM+Na), Calculated for C24H28BrN506: 562.41. The crude
e was used as such for the saponification reaction in Step 2.
Step 2
Preparation of (3S)[3-br0m0-5—methyl-phenyl)(2-(3-hydr0xy—5-((5—hydr0xy-1, 4, 5, 6-
ydropyrimidmyl)amin0)benzamia’o)acetamia’o)pr0panoic acid
N\ NH
NW COZH
Br CH3
To a solution of crude methyl (3S)—3-[3-bromomethyl-phenyl][[2-[[3-hydroxy-
-[(5-hydroxy-l,4,5,6-tetrahydropyrimidin
yl)amino]benzoyl]amino]acetyl]amino]propanoate from step 1 above (0.307 mmol) in a
mixture of a 1:1 mixture of acetonitrile/water (6 mL) was added lithium hydroxide
monohydrate (65 mg, 1.55 mol) at room temperature and the reaction mixture was stirred at
room temperature for l h. The mixture was neutralized with TFA (500 uL in 5.0 mL CH3CN)
and the e was evaporated in-vacuo to give a colorless gummy residue. The above crude
product was purified by reverse-phase HPLC with a gradient 10-50% CH3CN in water
containing 0.05% TFA to give the d product, after lyophilization, as a colorless
lyophilized solid le 11) (105.3 mg, yield 62%). LC/MS analysis of the product shows
the d product's mass: m/Z 548 (79BrM+H), and m/Z 550 (81BM+H), Calculated for
C23H26BI‘N5062 548.39. 1H NMR (400 MHz, DMSO-a’g): 5 2.28 (s, 3H, CH3-), 2.70 (d, J =
7.34 Hz, 2H, -CH2—COOH), 3.16 (d, J = 12.23 Hz, 2H), 3.34 (d, J = 11.98 Hz, 2H), 3.86 (d, J
= 5.87 Hz, 2H), 4.09 (t,J = 2.90 Hz, 1H), 5.13 (q, J = 7.50 Hz, 1H, -NH-CH-CH2-COOH),
6.74 (t, J = 1.96 Hz, 1H), 7.11 (s, 1H), 7.14 (appt, 1H), 7.28 (apt, 1H), 7.31 (apt, 1H), 8.13
(brs, 1H), 8.48 (d, J = 8.31 Hz, 1H), 8.61 (t, J = 5.87 Hz, 1H), 9.64 (s,lH), 10.02 (brs, 1H),
12.37 (brs, 1H, -COOH). 1H NMR spectrum of the product was consistent with the proposed
structure for Example 1 1.
Example 12
ation of (3S)[3-chloro-S-methyl-phenyl)(2-(3-hydr0xy((5-hydroxy—
1,4,5,6-tetrahydropyrimidin-Z-yl)amin0)benzamid0)acetamido)pr0pan0ic acid
NYNH O
HN ”EN COZH
CI CH3
Step 1
Preparation ofethyl (3S) 3-(3-ch10r0methyl-phenyl)(2-(3-hydr0xy-5—((5-hydr0xy—
1, 4, 5, 6-z‘etrahydropyrimidin-Z—yl)amin0)benzamido)acetamid0)pr0pan0ate
N\ NH
NAH/ COzEt
CI CH3
A mixture of 2-(3-hydroxy((5-hydroxy-l,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid (Example B) (81.80 mg, 0.265 mmol), (S)-ethyl 3-amino
(3-chloromethyl-phenyl)propanoate hydrochloride (synthesized as in the methods
described above starting from 3-chloromethyl benzaldehyde) (73.81 mg, 0.265 mmol) was
dissolved in DMF (2 mL) and dichloromethane (2 mL) to give a cream suspension. Solid 1-
hydroxybenzotriazole e (8.4 mg, 0.055 mmol) was added to above reaction mixture
and the reaction mixture was stirred under nitrogen atmosphere for 10 min. N,N'—
diisopropylcarbodiimide (60 uL, 0.390 mmol) was added and the on mixture was d
at room temperature under nitrogen atmosphere overnight. The solvent was evaporated in-
vacuo to give a colorless gummy residue of the product: ethyl (3S)[3-chloromethylphenyl
][[2-[[3-hydroxy[(5-hydroxy-l,4,5,6-tetrahydropyrimidin
yl)amino]benzoyl]amino]acetyl]amino]propanoate. LC-MS analysis of the crude residue
shows the d product’s mass: m/z 532 (35C1M+H), m/z 534 (37C1M+H), m/z 554
(35C1M+Na), and m/z 556 (37C1M+Na), ated for C25H30ClN506: 531.99. The crude
residue was used as such for the saponification reaction in Step 2.
Step 2
Preparation of (3S)[3-ch10r0methyl-phenyl)(2-(3-hydr0xy((5—hydr0xy-1, 4, 5, 6-
tetrahydropyrimidmyl)amin0)benzamia’o)acetamia’o)pr0panoic acid
N\ NH
NW COZH
CI CH3
To a solution of crude ethyl (3S)[3-chloromethyl-phenyl][[2-[[3-hydroxy
[(5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino]benzoyl]amino]acetyl]amino]propanoate from step 1 above (0.265 mmol) in a
mixture of a 1:1 mixture of acetonitrile/water (6 mL) was added lithium ide
drate (56 mg, 1.334 mmol) at room temperature and the reaction mixture was stirred
at room temperature for 1 h. The mixture was neutralized with TFA (500 uL in 5.0 mL
CH3CN) and the mixture was evaporated in-vacuo to give a colorless viscous residue. The
above crude product was purified by e-phase HPLC with a gradient 10-50% CH3CN in
water containing 0.05% TFA to give the desired t, after lyophilization, as a colorless
lyophilized solid (Example 12) (89.4 mg, yield 67%). LC/MS analysis of the product shows
the desired product's mass: m/z 504 (35C1M+H), m/z 506 (37C1M+H), m/z 526 (35C1M+Na), and
m/z 528 +H), Calculated for C23H26ClN506: 503.94. 1H NMR (400 MHz, DMSO-a’a):
2.29 (s, 3H, CH3-), 2.70 (d, J = 7.34 Hz, 2H, -CH2-COOH), 3.16 (d, J = 11.98 Hz, 2H), 3.34
(d, J = 11.00 Hz, 2H), 3.86 (d, J = 5.87 Hz, 2H), 4.09 (appt/m, 1H), 5.14 (q, J = 7.25 Hz, 1H,
-CH2-COOH), 6.74 (t, J = 1.96 Hz, 1H), 7.11 (d, J = 1.47 Hz, 2H), 7.14 (appt, 2H),
7.18 (s, 1H), 8.14 (br s, 2H), 8.48 (d, J = 8.31 Hz, 1H), 8.61 (t, J = 5.99 Hz, 1H), 9.67 (s,1H),
.03 (brs, 1H), 12.32 (brs, 1H, -COOH). 1H NMR spectrum of the product was consistent
with the proposed structure for Example 12.
Example 13
ation of (3S)[3-bromo-S-fluoro-phenyl)(2-(3-hydr0xy((5-hydroxy-1,4,5,6-
ydr0pyrimidin-Z-yl)amino)benzamid0)acetamid0)pr0pan0ic acid
N\ NH
NW COZH
F Br
Step 1
Preparation ofethyl (3S) 3-[3-br0m0flu0r0-phenyl)(2—(3-hydr0xy((5-hydr0xy-
1, 4, 5, 6—z‘elmhydropyrimidin-Z—yUammo)benzamid0)acetamidojpropanoate
N:NrNH o
”W COZEt
F Br
A e of 2-(3-hydroxy((5-hydroxy-l,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid (Example B) (79.50 mg, 0.258 mmol), ethyl (3S)amino-
3-(3-bromofluoro-phenyl)propanoate hydrochloride (synthesized as in the methods
described above starting from 3-bromofluoro benzaldehyde) (84.22 mg, 0.258 mmol) was
dissolved in DMF (2 mL) and dichloromethane (2 mL) to give a cream suspension. Solid 1-
hydroxybenzotriazole hydrate (8.0 mg, 0.052 mmol) was added to above reaction mixture
and the reaction mixture was stirred under en atmosphere for 10 min. N,N'—
diisopropylcarbodiimide (60 uL, 0.387 mmol) was added and the reaction mixture was stirred
at room temperature under nitrogen atmosphere ght. The solvent was evaporated in-
vacuo to give a colorless gummy residue of the product: ethyl (3S)[3-bromofluoro-
phenyl][[2-[[3-hydroxy[(5-hydroxy-l,4,5,6-tetrahydropy1imidin
yl)amino]benzoyl]amino]acetyl]amino]propanoate. LC-MS analysis of the crude residue
shows the desired product’s mass: m/z 580 (79BrM+H), m/z 582 (SlBrM+H), m/z 602
(79BrM+Na), and m/z 604 (SlBrM+Na), Calculated for C24H27BrFN506: 580.40. The crude
e was used as such for the saponification reaction in Step 2.
Step 2
Preparation of (3S)[3-br0m0flu0r0-phenyl)(2—(3-hydr0xy-5—((5-hydr0xy-1, 4, 5, 6-
tetrahydropyrimidmyl)amin0)benzamia’o)acetamia’o)pr0panoic acid
NYNH
HN ”WN COZH
F Br
To a solution of crude ethyl (3S)[3-bromofluoro-phenyl][[2-[[3-hydroxy
[(5-hydroxy-l -tetrahydropyrimidin
yl)amino]benzoyl]amino]acetyl]amino]propanoate from step 1 above (0.258 mmol) in a
mixture of a 1:1 mixture of acetonitrile/water (6 mL) was added lithium hydroxide
monohydrate (55 mg, 1.32 mol) at room temperature and the reaction mixture was stirred at
room temperature overnight. The mixture was neutralized with TFA (250 uL in 5.0 mL
CH3CN) and the mixture was evaporated in-vacuo to give a colorless gummy residue. The
above crude product was purified by reverse-phase HPLC with a nt 10-50% CH3CN in
water containing 0.05% TFA to give the desired product, after lyophilization, as a colorless
lyophilized solid (Example 13) (110.3 mg, yield 77%). LC/MS analysis of the product shows
the desired product's mass: m/Z 552 (79BrM+H), and m/Z 554 (81BM+H), Calculated for
C22H23BrFN506: 552.35. 1H NMR (400 MHZ, DMSO-a’6): 5 2.74 (d, J = 7.58 Hz, 2H, -CH2—
COOH), 3.16 (d, J = 12.23 Hz, 2H), 3.34 (d, J = 10.80 Hz, 2H), 3.87 (d, J = 5.87 Hz, 2H),
4.08 (t, J = 3.18 Hz, 1H), 5.17 (q, J = 7.34 Hz, 1H, -NH-CH-CH2-COOH), 6.75 (t, J = 1.96
Hz, 1H), 7.11 (t,J = 1.47 Hz, 1H), 7.14 (appt, 1H), 7.21 (t, J = 1.71 Hz, 1H), 7.24 (appt, 1H),
7.41 (m, 2H), 8.13 (brs, 1H), 8.53 (d, J = 8.07 Hz, 1H), 8.64 (t, J = 5.75 Hz, 1H), 9.66
(brs,lH), 10.03 (brs, 1H), 12.40 (brs, 1H, -COOH). 1H NMR spectrum of the t was
consistent with the proposed structure for Example 13. 19F NMR (376 MHz, ’a): 6 -
s), and -llO.57 (t, J = 8.85 Hz).
Example 14
Preparation of (3S)(3,5-dibromophenyl)-3—[[2-[[5-[(5-hydroxy-1,4,5,6-
tetrahydropyrimidin-Z-yl)amino]pyridine-S-carbonyl]amino]acetyl]amino]propanoic
acid
NYNH
HN N
\ N COH
I/ 0! 2
Br Br
Step1
Preparation ofethyl (3S)(3, 5-dibr0m0phenyU[[2-[[5-[(5-hydr0xy-1, 4, 5, 6-
retrahydropyrl'midin-Z—yl)ammojpyridme-S-carbonyljammojacelyljammojpropanoaz‘e
_< O
HN 2::
\ N
I COZEt
/ 0;
Br Br
A e of [(5-hydroxy-l,4,5,6-tetrahydropyrimidinyl)amino]pyridine
carbonyl]amino]acetic acid (Example D) (78.0 mg,0.266 mmol), ethyl (3S)amino(3,5-
dibromophenyl)propanoate hydrochloride (the (S) ester of Example J formed via the
tic lipase cleavage ) (103.06 mg, 0.266 mmol) and 1-hydroxybenzotriazole
hydrate (8.15 mg, 0.053 mmol) was dissolved in DMF (2 mL) and dichloromethane (2 mL)
and stirred at room temperature under nitrogen atmosphere for 10 min to give a cream
suspension. N,N'—diisopropylcarbodiimide (60.0 uL, 0.387 mmol) was added and the reaction
mixture was stirred at room temperature under nitrogen atmosphere overnight. The solvent
was evaporated in-vacuo to give a colorless crystalline solid of the intermediate product:
ethyl (3S)—3- [3,5 -dibromophenyl] -3 -[[2- [ [5 - [(5 -hydroxy- l ,4,5,6-tetrahydropyrimidin
yl)amino]pyridinecarbonyl]amino] acetyl]amino]propanoate. LC-MS analysis of the crude
residue shows the desired t’s mass: m/z 625 (79Br=79BrM+H), m/z 627 (79BF=SIBYI\/I+H), m/z
629 ngrM+H), m/Z 647 (79Br=79BrM+Na), m/Z 649 (79Br=SIBrM+Na), and W2 651
(SlBr=SIBrM+Na); Calculated for C23H26Br2N605: 626.30. The crude residue was used as such
for the saponification reaction in Step 2.
Step 2
ation of(3S)(3, 5-dibr0m0phenyU[[2-[[5-[(5-hya’roxy-1, 4, 5, 6-
z‘etrahya’ropyrl'mia’m-Z-yl)ammojpyria’me-S-carbonyljammojacetyljammojpropanoic acia’
\ N
I/ 01 COZH
Br Br
To a suspension of ethyl (3S)[3,5-dibromophenyl][[2-[[5-[(5-hydroxy-1,4,5,6-
tetrahydropyrimidinyl)amino]pyridinecarbonyl]amino] acetyl]amino]propanoate from
step 1 above (0.266 mmol) in a mixture of a 1:1 mixture of acetonitrile/water (6 mL) was
added lithium hydroxide monohydrate (56.0 mg, 0.1.334 mmol) and the reaction mixture was
stirred at room temperature for 1 h. The reaction mixture was neutralized with TFA (250 uL
in 5 mL CH3CN) and the mixture was evaporated in-vacuo to give a colorless
lline/gummy solid. The crude product was purified by reverse-phase HPLC with a
nt 10-50% CH3CN in water containing 0.05% TFA to give the desired product, after
lization, as a colorless lyophilized solid (Example 14) (825mg, yield 52%). LC/MS
analysis of the product shows the desired product's mass: m/z 597 (79Br=79BrM+H), m/z 599
(79Br=81BrM+H), and m/z 601 81BrM+H); Calculated for C21H22Br2N605: 598.24. 1H NMR
(400 MHz, DMSO-a’g): 5 2.74 (d, J = 7.34 Hz, 2H, -CH2-COOH), 3.17 (d, J = 12.23 Hz, 2H),
3.36 (d, J = 11.0 Hz, 2H), 3.93 (d, J = 5.62 Hz, 2H), 4.11 (t, J =3.06 Hz, 1H), 5.15 (q, J = 7.42
Hz, 1H, -NH-CH-CH2-COOH), 7.57 (d, J = 1.71 Hz, 1H), 7.72 (s, 1H), 8.03 (t, J = 2.20 Hz,
1H), 8.42 (brs, 1H), 8.59 (m, 2H), 8.90 (d, J = 1.71 Hz, 1H), 9.03 (t, J = 5.75 Hz, 1H), 9.88
(s,1H), 12.42 (hrs, 1H, -COOH). 1H NMR um of the product was consistent with the
proposed structure for Example 14.
Example 15
Preparation of (3S)[3,5-dichloro-phenyl)(2—(3-hydr0xy((5-hydr0xy—1,4,5,6-
tetrahydr0pyrimidin-Z-yl)amino)benzamid0)acetamid0)pr0pan0ic acid
NYNH O
HN ”El/N COZH
CI CI
Step 1
Preparation ofethyl (3S) 3-(3, 5-dich10r0phenyl)(2-(3-hydr0xy((5-hydr0xy-1,4, 5, 6-
tetrahydropyrimidin-Z—yUammo)benzamido)acetamid0)pr0pan0ate
N\ NH
”W COZEt
CI CI
A mixture of 2-(3-hydroxy((5-hydroxy-l,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid (Example B) (87.0 mg, 0.282 mmol), ethyl (3S)amino
(3,5-dichlorophenyl)propanoate hydrochloride (Example I) (84.26 mg, 0.282 mmol) was
dissolved in DMF (2 mL) and dichloromethane (2 mL) to give a cream suspension. Solid 1-
hydroxybenzotriazole hydrate (9.0 mg, 0.059 mmol) was added to above reaction mixture
and the reaction mixture was stirred under nitrogen here for 10 min. N,N'—
diisopropylcarbodiimide (65 uL, 0.420 mmol) was added and the reaction mixture was stirred
at room temperature under nitrogen atmosphere ght. The solvent was evaporated in-
vacuo to give a colorless gummy residue of the product: ethyl (3S)[3,5-dichlorophenyl]
[[2-[[3-hydroxy[(5-hydroxy-l,4,5,6-tetrahydropyrimidin
yl)amino]benzoyl]amino]acetyl]amino]propanoate. LC-MS analysis of the crude residue
shows the desired product’s mass: m/z 552 (35C1M+H), m/z 554 (37C1M+H), m/z 574
(35C1M+Na), and m/z 576 (37C1M+Na), Calculated for C24H27C12N506: 552.41 The crude
e was used as such for the saponification reaction in Step 2.
Step 2
Preparation )[3, 5-dich10r0-phenyl)(2-(3-hya’r0xy((5—hya’r0xy—1 , 4, 5, 6-
tetrahydropyrimidmyl)amin0)benzamia’o)acetamia’o)pr0panoic acia’
NYNH
HN ”WN COZH
CI CI
To a solution of crude ethyl (3S)—3-[3,5-chlorophenyl][[2-[[3-hydroxy[(5-
hydroxy-1,4,5 ,6-tetrahydropyrimidinyl)amino] benzoyl] amino] acetyl] amino]propanoate
from step 1 above (0.282 mmol) in a mixture of a 1:1 e of acetonitrile/water (6 mL)
was added lithium ide monohydrate (60 mg, 1.43 mol) at room temperature and the
reaction mixture was stirred at room temperature for 2 h. The mixture was neutralized with
TFA (100 uL in 5.0 mL CH3CN) and the mixture was evaporated in-vacuo to give a colorless
viscous residue. The above crude product was purified by reverse-phase HPLC with a
nt 10-50% CH3CN in water containing 0.05% TFA to give the d product, after
lyophilization, as a colorless lyophilized solid (Example 15) (101.2 mg, yield 68%). LC/MS
analysis of the product shows the desired product's mass: m/z 524 (35C1M+H), and m/z 526
(37C1M+H), Calculated for C22H23C12N506: 524.35. 1H NMR (400 MHz, DMSO-a’a): 5 2.75
(d, J = 7.34 Hz, 2H, OOH), 3.16 (brd, J = 11.98 Hz, 2H), 3.33 (brd, J = 12.23 Hz,
2H), 3.87 (d, J = 5.87 Hz, 2H), 4.08 (brs, 1H), 5.15 (q, J = 7.17 Hz, 1H, -NH-CH-CH2-
COOH), 6.75 (t, J =2.08 Hz, 1H), 7.11 (appt, 1H), 7.14 (appt, 1H), 7.40 (d, J =1.96 Hz, 1H),
7.49 (appt, 1H), 8.12 (s, 2H), 8.54 (d, J = 8.07 Hz, 1H), 8.64 (t, J = 5.87 Hz, 1H), 9.64 (s,1H),
10.02 (brs, 1H), 12.40 (brs, 1H, -COOH). 1H NMR spectrum of the product was consistent
with the proposed structure for Example 15.
2016/069511
Example 16
Preparation of (3S)[3-chlor0(triflu0r0meth0xy)phenyl)(2-(3-hydroxy-S-((5-
hydroxy-1,4,5,6-tetrahydropyrimidin-Z-yl)amino)benzamid0)acetamido)pr0pan0ic acid
NYNH O
HN ”EN COZH
CI OCF3
Step 1
Preparation l (3S) 3-(3-ch10r0(z‘rl'flu0r0methoxy)phenyl)(2—(3-hydr0xy((5-
hydroxy-I, 4, 5, rahydropyrimidin-Z—yl)ammo)benzamido)acetamid0)pr0pan0ate
N\ NH
”W COzEt
CI 00F3
A mixture of 2-(3-hydroxy((5-hydroxy-1,4,5,6-tetrahydropyrimidin
yl)amino)benzamido)acetic acid (Example B) (61.0 mg, 0.198 mmol), ethyl (3S)amino
(3-chloro(trifluoromethoxy)phenyl)propanoate hydrochloride (Example G) (68.89 mg,
0.198 mmol) was dissolved in DMF (2 mL) and romethane (2 mL) to give a cream
suspension. Solid 1-hydroxybenzotriazole hydrate (6.1 mg, 0.040 mmol) was added to above
reaction mixture and the reaction mixture was stirred under nitrogen atmosphere for 10 min.
N,N'—diisopropylcarbodiimide (46 uL, 0.297 mmol) was added and the reaction mixture was
stirred at room temperature under nitrogen here overnight. The solvent was evaporated
m-vacuo to give a cream gummy residue of the product: ethyl (3S)—3-[3-chloro
(trifluoromethoxy)phenyl][[2-[[3-hydroxy[(5-hydroxy-1,4,5,6-tetrahydropyrimidin
no]benzoyl]amino]acetyl]amino]propanoate. LC-MS analysis of the crude residue
shows the desired product’s mass: m/Z 602 (35C1M+H), m/z 604 (37C1M+H), m/z 624
(35C1M+Na), and m/z 626 (37C1M+Na), Calculated for C25H27C1F3N507z60196. The crude
residue was used as such for the saponification reaction in Step 2.
Step 2
Preparation of -[3-ch10r0(trifluoromethoxy)phenyl)(2—(3-hydr0xy—5-((5-hydr0xy-
1, 4, 5, 6—2‘6trahya’ropyrimia’in-Z—yl)am1770)benzaml'a’o)acetamia’o)pr0panoic acia’
NYNH
HN ”WN COZH
CI 00F3
To a solution of crude ethyl (3S)[3-chloro(trifluoromethoxy)phenyl][[2-[[3-
hydroxy[(5-hydroxy-1,4,5,6-tetrahydropyiimidin
yl)amino]benzoyl]amino]acetyl]amino]propanoate from step 1 above (0.198 mmol) in a
mixture of a 1:1 mixture of acetonitrile/water (6 mL) was added lithium hydroxide
drate (42 mg, 1.10 mol) at room temperature and the reaction mixture was stirred at
room ature for 1 h. The mixture was neutralized with TFA (100 uL in 5.0 mL CH3CN)
and the mixture was evaporated uo to give a colorless viscous residue. The above crude
product was purified by reverse-phase HPLC with a gradient 10-70% CH3CN in water
containing 0.05% TFA to give the desired product, after lyophilization, as a colorless
lyophilized solid (Example 16) (69.50 mg, yield 61%). LC/MS analysis of the product shows
the desired product's mass: m/Z 574 (35C1M+H), m/z 576 (37C1M+H), m/z 596 (35C1M+Na), and
m/Z 598 (37C1M+Na), Calculated for C23H23ClF3N507: 57391. 1H NMR (400 MHZ, DMSO-
a’6): 5 2.76 (d, J = 7.34 Hz, 2H, -CH2—COOH), 3.17 (d, J = 12.47 Hz, 2H), 3.34 (d, J = 12.72
Hz, 2H), 3.88 (d, J = 5.87 Hz, 2H), 4.09 (t, J = 3.20 Hz, 1H), 5.21 (q, J = 7.17 Hz, 1H, -NH-
CH-CHz-COOH), 6.76 (t, J = 2.08 Hz, 1H), 7.12 (t, J = 1.59 Hz, 1H), 7.14 (t, J = 1.00 Hz,
1H), 7.35 (s, 1H), 7.45 (d, J = 0.73 Hz, 1H), 7.49 (t, J = 1.47 Hz, 1H), 8.13 (brs, 1H), 8.58 (d,
J = 7.82 Hz, 1H), 8.65 (t, J = 5.87 Hz, 1H), 9.64 (s,1H), 10.03 (hrs, 1H), 12.44 (hrs, 1H, -
COOH). 1H NMR spectrum of the product was consistent with the proposed structure for
e 16. ”P NMR (376 MHz, DMSO-a’g): 5 -56.83 (s), and -73.70 (s).
Example 17
Preparation of (3S)(3-bromo(trifluoromethoxy)phenyl)(2—(3-hydroxy((5—
y-1,4,5,6-tetrahydropyrimidin-Z-yl)amino)benzamido)acetamido)propanoic acid
N\ NH
”W COZH
Br ocr=3
Step 1
Preparation ofethyl (35) 3-(3-br0m0(triflu0r0methoxy)phenyl)(2—(3-hydr0xy-5—((5-
hydroxy-I, 4, 5, 6—2‘6trahydropyrimidin-Z—yl)ammo)benzamido)acetamid0)pr0pan0ate
NI—TNrNH o
”W COzEt
Br ocr=3
A mixture of 2-(3-hydroxy((5-hydroxy-1,4,5,6-tetrahydropyrimidin
y1)amino)benzamido)acetic acid (Example B) (65.0 mg, 0.211 mmol), (S)-ethy1 3-amino
(3-bromo(trifluoromethoxy)pheny1)propanoate hydrochloride (Example H) (82.75 mg,
0.211 mmol) was dissolved in DMF (2 mL) and dichloromethane (2 mL) to give a colorless
sion. Solid 1-hydroxybenzotriazole hydrate (7.0 mg, 0.046 mmol) was added to above
reaction mixture and the reaction mixture was stirred under en atmosphere for 10 min.
MN'-diisopropy1carbodiimide (50 uL, 0.323 mmol) was added and the on mixture was
stirred at room ature under nitrogen atmosphere overnight. The solvent was evaporated
m-vacuo to give a cream gummy residue of the product: ethyl (3S)—3-[3-bromo
(trifluoromethoxy)pheny1][[2-[[3-hydroxy[(5-hydroxy-1,4,5,6-tetrahydropyrimidin
y1)amino]benzoy1]amino]acetyl]amino]propanoate. LC-MS analysis of the crude residue
shows the desired product’s mass: m/z 646 (79BrM+H), m/z 648 +H), m/z 668
(79BrM+Na), and m/z 670 (SlBrM+Na), Calculated for C25H27BrF3N507:646.41. The crude
residue was used as such for the saponification reaction in Step 2.
Step 2
Preparation 0f(3S)(3-br0m0(trifluoromethoxy)phenyl)(2—(3-hydr0xy((5-hya’r0xy-
1,4,5, rahya’ropyrimia’in-Z—yl)am1770)benzaml'a’o)acetamia’o)pr0panoic acia’
NYNH
HN ”WN COZH
Br ocr=3
To a solution of the crude product (0.211 mmol) from step 1 above in a mixture of a
1:1 mixture of acetonitrile/water (6 mL) was added lithium hydroxide monohydrate (48 mg,
1.144 mol) at room temperature and the reaction mixture was d at room temperature
for 1 h. The mixture was neutralized with TFA (0.1 mL in 5.0 mL CH3CN) and the mixture
was evaporated in-vacuo to give a colorless viscous residue. The above crude t was
purified by reverse-phase HPLC with a gradient 10-70% CH3CN in water ning 0.05%
TFA to give the desired product, after lyophilization, as a colorless lyophilized solid
(Example 17) (83.2 mg, yield 64%). LC/MS analysis of the product shows the desired
product's mass: m/Z 618 (79BrM+H), m/Z 620 (81BFM+H), m/Z 640 (79BrM+Na), and m/Z 642
(SlBrM+Na), Calculated for C23H23BrF3N507: 618.36. 1H NMR (400 MHz, DMSO-a’a): 5
2.75 (d, J = 7.09 Hz, 2H, -CH2-COOH), 3.16 (d, J = 12.23 Hz, 2H), 3.33 (d, J = 11.25 Hz,
2H), 3.87 (d, J = 5.87 Hz, 2H), 4.08 (t, J = 3.20 Hz, 1H), 5.19 (q, J = 7.42 Hz, 1H, -NH-CHCHz-COOH
), 6.75 (t, J = 1.96 Hz, 1H), 7.11 (appt, 1H), 7.14 (t, J = 1.70 Hz, 1H), 7.38 (s,
1H), 7.55 (s, 1H), 7.61 (s, 1H), 8.12 (brs, 1H), 8.58 (d, J = 7.82 Hz, 1H), 8.64 (t, J = 5.87 Hz,
1H), 9.63 (brs,1H), 10.02 (brs, 1H), 12.42 (brs, 1H, -COOH). 1H NMR spectrum of the
t was consistent with the proposed structure for Example 17. 19F NMR (376 MHz,
’g): 5 —56.81 (s), and —73.81 (s).
C. Biological Assay Results
The activities of the compounds of the present disclosure and comparison compounds
were tested in the following assays and experimental studies. The results are presented in
Tables 2, 3, and 4, and
'1. Solid Phase Receptor Assay (SPRA) for dfifii Function
Purified human frbronectin (R&D Systems, 1918-FN) diluted to 2 ug/mL in TBS+
buffer (25 mM Tris pH 7.4, 137 mM NaCl, 2.7 mM KCl, lmM CaClz, 1 mM MgC12, 1 mM
MnClz) was added to wells (50 l) of a 96-well half-well transparent rnicrotiter plate
(Greiner 675061) and incubated overnight at 4 °C. Wells were washed 3 times with 150 uL
TBS+ and 150 uL of blocking buffer (TBS+ with 1% bovine serum n, Sigma A7906)
were added. The plate was incubated for 1 hr at 37 °C and then washed 3X with TBS+
buffer. Recombinant human integrin (15B1 (R&D Systems, 3230-A5) was diluted to 0.1
ug/mL in TBS+/0.1% bovine serum albumin. Compounds were diluted 1:100 into the
integrin solution and then 50 uL added to empty wells of the washed frbronectin-coated plate
according to a standard template with each sample repeated in triplicate. After incubation for
two hours at room temperature, the plate was washed 3X with 150 uL of TBS+ buffer. To
each well, 50 uL of biotinylated anti-0L5 antibody (R&D Systems, BAF1864) at 0.5 ug/mL in
TBS+/0.1% BSA were added and the plate d and incubated for 1 hr at room
temperature. After washing the plate 3X with 150 uL of TBS+ buffer, 50 uL of avidin-
conjugated adish peroxidase (R&D Systems, DY998) diluted in TBS+ blocking buffer
were added to the wells and the plate incubated for 20 min at room temperature. The plate
was washed 3X with TBS+ buffer followed by 50 uL of room ature TMB substrate
(Sigma, T444) added to each well and the plate incubated for 20 min at room temperature.
Plates were read by colorimetric detection at 650 nm wavelength using a Tecan Safrre 11 plate
reader. Concentration-response curves were constructed by non-linear regression (best fit)
analysis, and ICso values were calculated for each compound.
2. Solid Phase Receptor Assay (SPRA) for avBl Function
Purified human frbronectin (R&D Systems, 1918-FN) d to 5 ug/mL in TBS+
buffer (25 mM Tris pH 7.4, 137 mM NaCl, 2.7 mM KCl, lmM CaClz, 1 mM MgC12, 1 mM
MnClz) was added to wells (50 uL/well) of a 96-well half-well transparent rnicrotiter plate
(Greiner ) and incubated overnight at 4 °C. Wells were washed 3 times with 150 uL
TBS+ and 150 uL of ng buffer (TBS+ with 1% bovine serum albumin, Sigma A7906)
were added. The plate was incubated for 1 hr at 37 °C and then washed 3X with TBS+
buffer. Recombinant human integrin del (R&D Systems. 6579-AV) was diluted to 2.0
ug/mL in TBS+/0.1% bovine serum n. Compounds were diluted 1:100 into the
integrin solution and 50 uL added to empty wells of the washed frbronectin-coated plate
according to a standard te with each sample repeated in triplicate. After incubation for
two hours at room temperature, the plate was washed 3X with 150 uL of TBS+ . To
each well, 50 uL of biotinylated anti-ocv antibody (R&D Systems, BAF1219) at 1 ug/mL in
TBS+/0.1% BSA were added and the plate covered and incubated for 1 hr at room
temperature. After washing the plate 3X with 150 uL of TBS+ , 50 uL of streptavidin-
conjugated horseradish peroxidase (R&D Systems, DY998) diluted in TBS+ blocking buffer
were added to the wells and the plate incubated for 20 min at room ature. The plate
was washed 3X with TBS+ buffer followed by 50 uL of TMB substrate (Sigma, T4444)
added to each well and the plate incubated for 20 min at room temperature. Plates were read
by metric detection at 650 nm wavelength using a Tecan Safire 11 plate reader.
Concentration-response curves were constructed by non-linear regression (best fit) analysis,
and ICso values were calculated for each compound.
3. Solid Phase Receptor Assay (SPRA) for (WM on
Recombinant human vitronectin (R& D Systems, 2308-VN) diluted to 1 ug/mL in
TBS+ buffer (25 mM Tris pH 7.4, 137 mM NaCl, 2.7 mM KCl, lmM CaClz, 1 mM MgC12, 1
mM MnClz) was added to wells (50 uL/well) of a 96-well half-well transparent microtiter
plate (Greiner 675061) and incubated overnight at 4 °C. Wells were washed 3 times with 150
uL TBS+ and 150 uL of blocking buffer (TBS+ with 1% bovine serum albumin, Sigma
A7906) were added. The plate was incubated for 1 hr at 37 °C and then washed 3X with
TBS+ buffer. Recombinant human integrin (va3 (R&D Systems, V) was diluted to 1
ug/mL in TBS+/0.1% bovine serum albumin. Compounds were diluted 1:100 into the
integrin on and then 50 uL added to empty wells of the washed vitronectin-coated plate
according to a standard template with each sample repeated in triplicate. After incubation for
two hours at room ature, the plate was washed 3X with 150 uL of TBS+ buffer. To
each well, 50 uL of biotinylated anti-ocv antibody (R&D Systems, BAF1219) at 0.5 ug/mL in
TBS+/0.1% BSA were added and the plate covered and incubated for 1 hr at room
ature. After washing the plate 3X with 150 uL of TBS+ buffer, 50 uL of streptavidin-
conjugated horseradish peroxidase (R&D Systems, DY998) diluted in TBS+ blocking buffer
were added to the wells and the plate incubated for 20 min at room temperature. The plate
was washed 3X with TBS+ buffer followed by 50 uL of TMB substrate (Sigma, T4444)
added to each well and the plate was incubated for 20 min at room temperature. Plates were
read by metric detection at 650 nm wavelength using a Tecan Safire 11 plate reader.
Concentration-response curves were constructed by non-linear regression (best fit) analysis,
and ICso values were calculated for each compound.
4. Solid Phase or Assay (SPRA) for aVBS Function
Recombinant human ectin (R& D Systems, 2308-VN) at 0.25 ug/mL in TBS+
buffer (25 mM Tris pH 7.4, 137 mM NaCl, 2.7 mM KCl, 1 mM CaClz, 1 mM MgC12, 1 mM
MnClz) was added to wells (50 uL/well) of a 96-well half-well transparent microtiter plate
(Greiner ) and incubated overnight at 4 °C. Wells were washed 3 times with 150 “L
TBS+ and 150 “L of blocking buffer (TBS+ with 1% bovine serum albumin, Sigma A7906)
were added. The plate was incubated for 1 hr at 37 °C and then washed 3X with TBS+
buffer. Recombinant human integrin (va5 (R&D Systems, 2528-AV) was diluted to 0.1
ug/mL in TBS+/0.1% bovine serum albumin. Compounds were diluted 1:100 into the
integrin solution and then 50 “L added to empty wells of the washed vitronectin-coated plate
according to a standard template with each sample repeated in triplicate. After tion for
two hours at room temperature, the plate was washed 3X with 150 “L of TBS+ buffer. To
each well, 50 ul of biotinylated cv antibody (R&D Systems, BAF1219 ) at 0.5 ug/mL in
TBS+/0.1% BSA at 0.5 ug/mL were added and the plate covered and incubated for 1 hr at
room temperature. After washing the plate 3X with 150 uL of TBS+ buffer, 50 “L of
streptavidin-conjugated horseradish peroxidase (R&D sm DY998) diluted in TBS+
blocking buffer were added to the wells and the plate incubated for 20 min at room
temperature. The plate was washed 3X with TBS+ buffer followed by 50 “L of TMB
substrate (Sigma T4444) added to each well and the plate incubated for 20 min at room
temperature. Plates were read by colorimetric ion at 650 nm wavelength using a Tecan
Safire 11 plate . Concentration-response curves were constructed by non-linear
sion (best fit) analysis, and ICso values were calculated for each compound.
. Solid Phase Receptor Assay (SPRA) for aVBG Function
Recombinant human LAP (R&D Systems, 246-LP) diluted to 0.25 ug/mL in TBS+
buffer (25 mM Tris pH 7.4, 137 mM NaCl, 2.7 mM KCl, 1 mM CaClz, 1 mM MgC12, 1 mM
MnClz) was added to wells (50 uL/well) of a 96-well half-well transparent microtiter plate
(Greiner 675061) and incubated overnight at 4 °C. Wells were washed 3 times with 150 “L
TBS+, and 150 “L of blocking buffer (TBS+ with 1% bovine serum albumin, Sigma A7906)
were added. The plate was ted for 1 hr at 37 OC, and then washed 3X with TBS+
buffer. Recombinant human integrin (va6 (R&D Systems, 3817-AV) was diluted to 0.1
ug/mL in TBS+/0.1% bovine serum n. Compounds were diluted 1:100 into the
integrin solution and then 50 “L added to empty wells of the washed LAP-coated plate
according to a standard template with each sample repeated in triplicate. After incubation for
two hours at room temperature, the plate was washed 3X with 150 uL of TBS+ buffer. To
each well, 50 uL of ylated anti-ocv antibody (R&D Systems, BAF1219) at 0.5 ug/mL in
TBS+/0.1% BSA were added and the plate was covered and incubated for 1 hr at room
temperature. After washing the plate 3X with 150 uL of TBS+ buffer, 50 uL of streptavidin-
conjugated horseradish peroxidase (R&D Systems, DY998) diluted in TBS+ blocking buffer
were added to the wells and the plate incubated for 20 min at room temperature. The plate
was washed 3X with TBS+ buffer followed by 50 uL of TMB substrate (Sigma T4444) added
to each well and the plate ted for 20 min at room ature. Plates were read by
colorimetric detection at 650 nm wavelength using a Tecan Safire 11 plate reader.
tration-response curves were constructed by non-linear sion (best fit) analysis,
and ICso values were calculated for each compound.
6. Solid Phase Receptor Assay (SPRA) for (WM Function
Recombinant human LAP protein (R&D s, Inc, 246-LP) diluted to 0.5 ug/mL
in TBS+ buffer (25 mM Tris pH 7.4, 137 mM NaCl, 2.7 mM KCl, 1mM CaClz, 1 mM
MgC12, 1 mM MnClz) was added to wells (50 ul/well) of a 96-well half-well transparent
microtiter plate (Greiner 675061), and incubated overnight at 4 °C. Wells were washed 3
times with 150 uL TBS+ and 150 uL of blocking buffer (TBS+ with 1% bovine serum
albumin, Sigma A7906) were added. The plate was incubated for 1 hr at 37 °C and then
washed 3X with TBS+. Recombinant human integrin (vaS (R&D Systems,4135-AV) was
diluted to 0.1 ug/mL in TBS+/0.1% bovine serum albumin. Compounds were diluted 1:100
into the integrin on and 50 uL added to empty wells of the washed LAP-coated plate
according to a standard template with each sample repeated in triplicate. After incubation for
two hours at room temperature, the plate was washed 3X with 150 uL of TBS+. To each
well, 50 uL of ylated anti-ocv antibody (R&D Systems, BAF1219) at 1 ug/mL in
TBS+/0.1% BSA were added and the plate was covered and incubated for 1 hr at room
ature. After washing the plate 3X with 150 uL of TBS+ buffer, 50 uL of streptavidin-
conjugated horseradish peroxidase (R&D s, DY998) diluted in TBS+ blocking buffer
were added to the wells and the plate incubated for 20 min at room temperature. The plate
was washed 3X with TBS+ followed by 50 uL of TMB substrate (Sigma T4444) added to
each well and the plate incubated for 20 min at room temperature. Plates were read by
colorimetric detection at 650 nm wavelength using a Tecan Safire 11 plate reader.
Concentration-response curves were ucted by non-linear regression (best fit) analysis,
and ICso values were calculated for each compound.
7. Solid Phase Receptor Assay (SPRA) for (1831 Function
Recombinant mouse nephronectin protein (R&D Systems, Inc, 4298-NP) diluted to 1
ug/mL in TBS+ buffer (25 mM Tris pH 7.4, 137 mM NaCl, 2.7 mM KCl, 1 mM CaClz, 1
mM MgC12, 1 mM MnClz) was added to wells (50 ul/well) of a 96-well half-well transparent
microtiter plate (Greiner 675061), and incubated overnight at 4 °C. Wells were washed 3
times with 150 “L TBS+ and 150 “L of blocking buffer (TBS+ with 1% bovine serum
albumin, Sigma A7906) were added. The plate was incubated for 1 hr at 37 °C and then
washed 3X with TBS+. Recombinant human in (18B1 (R&D Systems, pre—launch) was
diluted to 0.25 pg/mL in TBS+/0.1% bovine serum albumin. Compounds were diluted 1: 100
into the integrin solution and 50 pL added to empty wells of the washed nephronectin-coated
plate ing to a standard template with each sample repeated in triplicate. After
incubation for two hours at room temperature, the plate was washed 3X with 150 pL of
TBS+. To each well, 50 “L of biotinylated anti-B1 antibody (R&D Systems, BAF1778) at
0.5 pg/mL in TBS+/0.1% BSA were added and the plate was covered and incubated for 1 hr
at room temperature. After washing the plate 3X with 150 uL of TBS+ buffer, 50 “L of
streptavidin-conjugated horseradish peroxidase (R&D Systems, DY998) d in TBS+
blocking buffer were added to the wells and the plate incubated for 20 min at room
temperature. The plate was washed 3X with TBS+ followed by 50 pL of TMB substrate
(Sigma T4444) added to each well and the plate incubated for 20 min at room ature.
Plates were read by colorimetric detection at 650 nm ngth using a Tecan Safire 11 plate
reader. tration-response curves were constructed by non-linear regression (best fit)
analysis, and ICso values were ated for each compound.
D. Pharmacokinetic Analysis
1. ais
A lly sufficient volume of dimethylsulfoxide (DMSO) was added to each test
compound to achieve solubilization. For intravenous (IV) delivery, compounds were then
formulated as solutions in glycerol formal: saline r 20:80 or 40:60 v/v) (Sigma
Chemicals, St. Louis). For oral (PO) administration, nds were formulated with 0.5%
methylcellulose. Five to siX compound solutions were combined into a singled mixed
solution for IV and PO cassette administration with final DMSO concentrations < 0.6% or <
1.2%, for the IV and PO cassettes, respectively. Analytes were detected in test samples using
an LC/MS/MS (liquid chromatography/mass spectrometry) system consisting of an LC-
20AD pump (Shimadzu, Kyoto, Japan), an HTC PAL autosampler (Leap technologies,
ro, NC), and a Sciex API-4000 mass spectrometer in ESI mode (AB Sciex, Foster
City, CA.). An Amour C18 reverse phase column (Analytical Sales and Services, Pompton
Plains, NJ.) was used for chromatographic separation.
2. Experimental ois
Pharmacokinetic (PK) studies conducted at Saint Louis University used male
Sprague-Dawley rats with an initial body weight of 200 to 220 g. IV PK studies were
performed with the following compounds: Examples 1-3 and 5-17 and comparison
compounds C12-C18, C29, and C30. Animals were allowed free access to food and water.
Rats were individually housed and connected to jugular vein catheters. Each cassette
ation was administered intravenously to two rats (1 mL/kg body weight). Each cassette
formulation contained 5-6 compounds at 1 mg/kg in either 20:80 or 40/60 glycerol
formal/saline (v/v). Blood was collected manually via the catheter into lithium-heparin tubes
at 0.017, 0.083, 0.5, 1, 2, 4, 6 and 24 hours post-dose. Animals were euthanized with C02 at
the end of the experiment.
Oral PK studies were conducted with the following compounds: Examples 1-3 and 5-
17 and comparison compounds C12, C14-16 and C29-30. The P0 cassette formulations were
administered via oral gavage to two rats (10 mL/kg body weight) containing 5-6 nds
per cassette. The oral dose was administered at 2 mg/kg/compound in 0.5% methylcellulose.
Blood collection time points were 0.25, 0.5, 1, 2, 4, 6 and 24 hours post-dose into lithium-
heparin tubes. Animals were euthanized with C02 at the end of the experiment.
al standard was added to all samples at 200 ng/mL (final), as well as 150 uL of
acetonitrile. Plasma samples (50 uL total volume) were diluted with control na'1've rat plasma
as appropriate to bring the sample ement into the linear dynamic range of the rd
curve. The samples were capped and mixed on a multi-plate vortexer for 5 minutes and
fuged for 5 minutes at 3200 rmp. The supemant was transferred to 96-well sample
plate and capped for LC/MS/MS analysis. Compounds were optimized and monitored for
their respective MRM transitions. The mobile phases consisted of 0.1% formic acid
us) and 100% itrile (organic) with an Amour C18 reverse phase column (2.1 X 30
mm, 5 ) at a flow rate of 0.35 mL/min. The starting phase was 10% acetonitrile for the
0.9 minutes then increased to 90% acetonitrile over 0.4 minutes, and was ined for an
additional 0.2 minutes before returning to 10% itrile over 0.4 minutes. The 10%
2016/069511
acetonitrile was held for an additional 1.6 s. Peak areas were integrated using Analyst
1.5.1 (AB ScieX, Foster City, CA.).
Similar rat PK studies were conducted by PRESCOS, LLC (San Diego, CA) for
comparison compounds C19-C28. Female Sprague-Dawley rats with an initial body weight
of 195 to 220 g were used. te formulations with 1 mg/kg/compound in 40/60 glycerol
formal/saline were administered intravenously to three rats. The dosing volume for each
animal was 5 mL/kg body weight. Blood samples were collected via a jugular vein catheter
at 0.017, 0.25, 0.5, 1, 2, 4 and 8 hours post-dose into K2EDTA tubes. Animals were
euthanized with C02 at the end of the experiment. Sample processing and nd
measurement by LC/MS/MS was performed by HT Laboratories (San Diego, CA).
Table 3A - Integrin Assay Results for Comparison Compounds
015131 @8131 owBl och3 ochS owB6 ochS
SPRA SPRA SPRA SPRA SPRA SPRA SPRA
IC50 1C5.) IC50 1C5.) 1C5.) 1C5.) 1C5.)
(11M) (11M) (11M) (11M) (11M) (11M) (11M)
Compounds --_
C1 16::9 8::2 17::2 5:2 3:1
C4 7 4 2
C5 24 4 1
C6 7 :: 4 6 1
C7 59 11 25
C11 33 16 4 4 11
Table 3B - Integrin Assay Results for Examples
_----____--
—-m---
(x5131
SPRA
ICSO
Examples
4 0.7 0.4 0.4
\OOO\]O\UI 0.8 0.5 0.5
0.6 O U] 0.2 0.4
0.7 O N II II 0 0 .0 m
0.6 0.1 0.4
0.3 0.5 U) 0.3 0.3 099 WJ>J>UIOJ>
: 0.4 1.1 2:II I-I N4; I-I O U) I
III O I—* O U) II: 01
11 0.5 0.7 .0 4; 0.3 0.5 .0 ox
12 4; II N 4; 0.4 0.6
13 0.6 0.6 I-I .0 o 0.1 0.4
14 0.6 0.4 O . U) 0.1 0.2
: 0.3 1.2 i0.3 0.6
16 : 0.4 0.5 II .0 U) 0.6 0.5
17 : 0.1 0.7 .N 00 HII I-I I-I 0.6 0.7
Table 4A — Plasma Half Life of Examples
Examples plasma t 1/2 after 1 mg/kg IV bolus dose in rat
.2 hrs
\DOOQQM-bUJN 9.1 hrs
6.1 hrs
Not Tested
6.6 hrs
16.7 hrs
4.6 hrs
23.9 hrs
.6 hrs
I—«I—«I—«I—II—«I—I m-bUJNI—‘O 3.9 hrs
24.0 hrs
13.7 hrs
11.0 hrs
34.2 hrs
23.8 hrs
plasma t 1/2 after 1 mg/kg IV bolus dose1n rat
Table 4B — Plasma Half Life of Comparison Compounds
Comparison nds plasma t 1/2 after 1 mg/kg iv bolus dose in rat
C12 0.5 hrs
C13 1.1 hrs
C14 1.0 hr
C15 0.6 hrs
C16 1.6 hrs
C17 0.8 hrs
C18 1.2 hrs
C19 0.43 hrs
C20 0.38 hrs
C21 1.5 hrs
C22 0.30 hrs
C23 0.21 hrs
C24 0.28 hrs
C25 0.23 hrs
C26 0.25 hrs
C27 0.21 hrs
C28 0.3 hrs
C29 < .08 hrs
C30 1.6 hrs
Table 5A — AUC Plasma Exposure of Compounds
AUC (0-inl) (nthr/mL) after a 2 mg/kg PO dose in rat
25048
19257
4870
11402
Example AUC (0-inl) (nthr/mL) after a 2 mg/kg PO dose in rat
6 34386
7 3887
8 4468
9 4121
12969
11 9136
12 9107
13 13929
14 6502
15610
16 6808
17 13128
Table 5B — AUC Plasma re of Comparison Compounds
Comparison Compound AUC ) (nthr/mL) after a 2 mg/kg PO dose in rat
C12 205
C14 224
C15 87
C16 62
C29 < 1
C30 <1
The AUC of the es described herein and select comparison compounds was
determined after a single 2 mg/kg oral (PO) dose in rat, demonstrating improved plasma
exposure of the examples of the present disclosure.
* >l< * >l< * >l< * >l< * >l< *
All of the compounds, itions, and methods disclosed and claimed herein can
be made and executed without undue experimentation in light of the present disclosure.
While the compounds, compositions, and methods of this disclosure have been described in
terms of preferred embodiments, it will be nt to those of skill in the art that variations
may be applied to the compositions and methods, and in the steps or in the sequence of steps
of the methods described herein without departing from the concept, spirit and scope of the
disclosure. More specifically, it will be apparent that certain agents which are both
ally and logically related may be substituted for the agents described herein
while the same or similar results would be achieved. All such similar substitutes and
modifications apparent to those skilled in the art are deemed to be within the spirit, scope and
concept of the disclosure as defined by the appended claims.
REFERENCES
The following nces to the extent that they provide exemplary procedural or
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Claims (73)
1. A compound of the formula: (I), wherein: A is C−OH or N; R′ is hydrogen, alkyl(C≤8), or substituted alkyl(C≤8); and X and Y are each independently cyano, halo, fluoroalkoxy(C1-2), alkyl(C1-2), or fluoroalkyl(C1-2), with the proviso that X and Y are not both cyano or alkyl(C1-2); or a pharmaceutically able salt or tautomer of the above formula.
2. The compound of claim 1, wherein A is N.
3. The compound of claim 1, wherein A is C−OH.
4. The compound according to any one of claims 1-3, wherein Rʹ is hydrogen.
5. The compound according to any one of claims 1-4, wherein X is halo.
6. The compound of claim 5, wherein X is −F, −Cl, or −Br.
7. The nd of claim 6, wherein X is −F.
8. The compound of claim 6, wherein X is −Cl.
9. The compound of claim 6, wherein X is −Br.
10. The compound according to any one of claims 1-4, wherein X is fluoroalkoxy(C1-2).
11. The compound of claim 10, wherein X is −OCF3.
12. The compound according to any one of claims 1-4, wherein X is fluoroalkyl(C1-2).
13. The compound of claim 12, n X is −CHF2.
14. The compound of claim 12, wherein X is −CF3.
15. The compound according to any one of claims 1-4, wherein X is alkyl(C1-2).
16. The nd of claim 15, wherein X is −CH3.
17. The compound according to any one of claims 1-16, wherein Y is halo.
18. The compound of claim 17, wherein Y is −F, −Cl, or −Br.
19. The compound of claim 17, wherein Y is −F.
20. The nd of claim 17, wherein Y is −Cl.
21. The compound of claim 17, wherein Y is −Br.
22. The nd according to any one of claims 1-16, wherein Y is fluoroalkoxy(C1-2).
23. The compound of claim 22, wherein Y is −OCF3.
24. The compound according to any one of claims 1-16, wherein Y is fluoroalkyl(C1-2).
25. The compound of claim 24, wherein Y is −CHF2.
26. The compound of claim 24, wherein Y is −CF3.
27. The compound according to any one of claims 1-14, wherein Y is alkyl(C1-2).
28. The compound of claim 27, wherein Y is −CH3.
29. The compound ing to any one of claims 1-4, wherein X and Y are each independently selected from the groups consisting of −F, −Cl, −Br, −OCF3, −CH3, −CHF2, and −CF3, with the proviso that X and Y are not both −CH3.
30. The compound ing to any one of claims 1-29, wherein the carbon atom labeled β is in the S configuration.
31. The compound of claim 1, further defined as: , , , , , , , , , , , , , , , , or or a pharmaceutically acceptable salt or tautomer of any of the above formulas.
32. The compound according to any one of claims 1-31, wherein the compound is ive for inhibiting three or more RGD integrins selected from the group consisting of α5β1, αvβ1, α8β1, αvβ3, αvβ5, αvβ6, and αvβ8, n the iveness of the compound corresponds to an IC50 value of less than 10 nM for each of the three or more RGD integrins as measured using a solid phase receptor assay (SPRA) for function of the tive integrin.
33. The compound according to any one of claims 1-31, wherein the compound has a sustained plasma half life of at least 2 hours as measured in a rat using an iv bolus comprising 1 mg of compound per kg of rat.
34. A pharmaceutical composition comprising: a) the compound according to any one of claims 1-33; and b) an excipient.
35. Use of a compound of any one of claims 1-33, or a pharmaceutically acceptable salt thereof in the preparation of a medicament for the treatment of a disease or a disorder.
36. Use according to claim 35, wherein the disease or disorder is associated with angiogenesis.
37. Use according to claim 35, wherein the disease or disorder is associated with fibrosis.
38. Use according to claim 35, wherein the e or disorder is associated with fibrosis and/or angiogenesis.
39. Use ing to any one of claims 35-38, wherein the disease or disorder is pulmonary, liver, renal, cardiac, and pancreatic fibrosis, scleroderma, scarring, retinopathy of prematurity, familial exudative vitreoretinopathy, proliferative vitreoretinopathies, macular degeneration, diabetic retinopathy, cancer, orosis, autoimmune diseases, humoral hypercalcemia of malignancy, Paget’s disease, periodontal e, psoriasis, arthritis, restenosis, and infection.
40. Use according to claim 39, wherein the disease or disorder is pulmonary fibrosis.
41. Use ing to claim 39, n the disease or disorder is liver fibrosis.
42. Use according to claim 39, wherein the disease or disorder is cardiac fibrosis.
43. Use according to claim 39, wherein the disease or er is renal fibrosis.
44. Use according to claim 39, wherein the disease or disorder is atic fibrosis.
45. Use according to claim 39, wherein the disease or disorder is scleroderma.
46. Use according to claim 39, wherein the disease or disorder is scarring.
47. Use ing to claim 46, wherein the scarring is dermal scarring.
48. Use according to claim 46, wherein the scarring is retinal scarring.
49. Use according to claim 46, wherein the scarring is corneal ng.
50. Use according to claim 39, wherein the disease or disorder is retinopathy of prematurity.
51. Use according to claim 39, wherein the disease or disorder is familial exudative retinopathy.
52. Use according to claim 39, wherein the disease or disorder is proliferative vitreoretinopathies.
53. Use according to claim 39, wherein the disease or disorder is macular degeneration.
54. Use according to claim 39, wherein the disease or disorder is diabetic retinopathy.
55. Use according to claim 39, wherein the disease or disorder is cancer.
56. Use according to claim 55, wherein the cancer includes solid tumor growth or neoplasia.
57. Use according to claim 55, wherein the cancer includes tumor metathesis.
58. Use according to claim 55, wherein the cancer is of the bladder, blood, bone, brain, breast, central nervous system, cervix, colon, trium, esophagus, gall bladder, lia, genitourinary tract, head, kidney, larynx, liver, lung, muscle tissue, neck, oral or nasal mucosa, ovary, pancreas, te, skin, spleen, small intestine, large ine, stomach, testicle, or thyroid.
59. Use according to claim 55, wherein the cancer is a carcinoma, sarcoma, lymphoma, leukemia, melanoma, mesothelioma, multiple a, or seminoma.
60. Use according to claim 39, wherein the disease or disorder is osteoporosis.
61. Use according to claim 39, wherein the disease or disorder is an autoimmune disease.
62. Use according to claim 61, wherein the autoimmune disorder is multiple sclerosis.
63. Use according to claim 39, n the disease or disorder is humoral alcemia of malignancy.
64. Use according to claim 39, wherein the disease or disorder is Paget’s disease.
65. Use according to claim 39, wherein the disease or er is periodontal disease.
66. Use according to claim 39, wherein the disease or disorder is psoriasis.
67. Use according to claim 39, wherein the disease or disorder is arthritis.
68. Use according to claim 67, wherein the arthritis is toid arthritis.
69. Use ing to claim 39, wherein the disease or disorder is restenosis.
70. Use according to claim 39, n the disease or disorder is an infection.
71. Use ing to any of claims 35-70, wherein the patient is a human, monkey, cow, horse, sheep, goat, dog, cat, mouse, rat, guinea pig, or transgenic species thereof.
72. Use according to claim 71, wherein the patient is a monkey, cow, horse, sheep, goat, dog, cat, mouse, rat, or guinea pig.
73. Use according to claim 71, wherein the patient is a human. {my}:
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US201562273246P | 2015-12-30 | 2015-12-30 | |
US62/273,246 | 2015-12-30 | ||
PCT/US2016/069511 WO2017117538A1 (en) | 2015-12-30 | 2016-12-30 | Meta-azacyclic amino benzoic acid derivatives as pan integrin antagonists |
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NZ743308B true NZ743308B (en) | 2020-01-28 |
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