NZ719529B2 - Amphotericin b derivatives with improved therapeutic index - Google Patents
Amphotericin b derivatives with improved therapeutic index Download PDFInfo
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- NZ719529B2 NZ719529B2 NZ719529A NZ71952914A NZ719529B2 NZ 719529 B2 NZ719529 B2 NZ 719529B2 NZ 719529 A NZ719529 A NZ 719529A NZ 71952914 A NZ71952914 A NZ 71952914A NZ 719529 B2 NZ719529 B2 NZ 719529B2
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- 239000002270 dispersing agent Substances 0.000 description 1
- 238000004090 dissolution Methods 0.000 description 1
- 239000002552 dosage form Substances 0.000 description 1
- 239000006196 drop Substances 0.000 description 1
- KCXVZYZYPLLWCC-UHFFFAOYSA-N edta Chemical compound OC(=O)CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O KCXVZYZYPLLWCC-UHFFFAOYSA-N 0.000 description 1
- 238000005538 encapsulation Methods 0.000 description 1
- 239000007920 enema Substances 0.000 description 1
- 230000002255 enzymatic Effects 0.000 description 1
- 238000006735 epoxidation reaction Methods 0.000 description 1
- OMAYPGGVIXHKRO-UHFFFAOYSA-N ethanethiol Chemical compound [CH2]CS OMAYPGGVIXHKRO-UHFFFAOYSA-N 0.000 description 1
- 229940093495 ethanethiol Drugs 0.000 description 1
- VGGSQFUCUMXWEO-UHFFFAOYSA-N ethene Chemical compound C=C VGGSQFUCUMXWEO-UHFFFAOYSA-N 0.000 description 1
- 229940093471 ethyl oleate Drugs 0.000 description 1
- 238000002474 experimental method Methods 0.000 description 1
- 230000001815 facial Effects 0.000 description 1
- 150000004665 fatty acids Chemical class 0.000 description 1
- 230000037406 food intake Effects 0.000 description 1
- 229910021485 fumed silica Inorganic materials 0.000 description 1
- 125000000524 functional group Chemical group 0.000 description 1
- 230000000855 fungicidal Effects 0.000 description 1
- YLQBMQCUIZJEEH-UHFFFAOYSA-N furane Chemical compound C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 1
- 239000007789 gas Substances 0.000 description 1
- 230000002496 gastric Effects 0.000 description 1
- 125000005456 glyceride group Chemical group 0.000 description 1
- 125000003827 glycol group Chemical group 0.000 description 1
- 239000000937 glycosyl acceptor Substances 0.000 description 1
- 230000001279 glycosylating Effects 0.000 description 1
- 238000000227 grinding Methods 0.000 description 1
- 150000004820 halides Chemical class 0.000 description 1
- 230000036541 health Effects 0.000 description 1
- WGBBUURBHXLGFM-UHFFFAOYSA-N hexan-2-amine Chemical compound CCCCC(C)N WGBBUURBHXLGFM-UHFFFAOYSA-N 0.000 description 1
- 150000002430 hydrocarbons Chemical class 0.000 description 1
- 239000000017 hydrogel Substances 0.000 description 1
- 125000004435 hydrogen atoms Chemical group [H]* 0.000 description 1
- 229910000041 hydrogen chloride Inorganic materials 0.000 description 1
- 230000002209 hydrophobic Effects 0.000 description 1
- 150000003949 imides Chemical class 0.000 description 1
- 239000003018 immunosuppressive agent Substances 0.000 description 1
- 238000002513 implantation Methods 0.000 description 1
- 230000002458 infectious Effects 0.000 description 1
- 238000001802 infusion Methods 0.000 description 1
- 238000011081 inoculation Methods 0.000 description 1
- 238000007689 inspection Methods 0.000 description 1
- 238000009434 installation Methods 0.000 description 1
- 229960003130 interferon gamma Drugs 0.000 description 1
- 229940079866 intestinal antibiotics Drugs 0.000 description 1
- 239000007928 intraperitoneal injection Substances 0.000 description 1
- 238000007913 intrathecal administration Methods 0.000 description 1
- GHXZPUGJZVBLGC-UHFFFAOYSA-N iodoethene Chemical compound IC=C GHXZPUGJZVBLGC-UHFFFAOYSA-N 0.000 description 1
- 239000003456 ion exchange resin Substances 0.000 description 1
- 229920003303 ion-exchange polymer Polymers 0.000 description 1
- 238000005304 joining Methods 0.000 description 1
- 210000003292 kidney cell Anatomy 0.000 description 1
- 210000002429 large intestine Anatomy 0.000 description 1
- RGLRXNKKBLIBQS-XNHQSDQCSA-N leuprolide acetate Chemical compound CC(O)=O.CCNC(=O)[C@@H]1CCCN1C(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@H](CC=1C2=CC=CC=C2NC=1)NC(=O)[C@H](CC=1N=CNC=1)NC(=O)[C@H]1NC(=O)CC1)CC1=CC=C(O)C=C1 RGLRXNKKBLIBQS-XNHQSDQCSA-N 0.000 description 1
- 230000004301 light adaptation Effects 0.000 description 1
- 238000011068 load Methods 0.000 description 1
- 239000001095 magnesium carbonate Substances 0.000 description 1
- 239000011776 magnesium carbonate Substances 0.000 description 1
- 229910000021 magnesium carbonate Inorganic materials 0.000 description 1
- 235000019359 magnesium stearate Nutrition 0.000 description 1
- 230000014759 maintenance of location Effects 0.000 description 1
- 238000005259 measurement Methods 0.000 description 1
- 230000001404 mediated Effects 0.000 description 1
- 229910052751 metal Inorganic materials 0.000 description 1
- 239000002184 metal Substances 0.000 description 1
- VNWKTOKETHGBQD-UHFFFAOYSA-N methane Chemical compound C VNWKTOKETHGBQD-UHFFFAOYSA-N 0.000 description 1
- IQSHMXAZFHORGY-UHFFFAOYSA-N methyl prop-2-enoate;2-methylprop-2-enoic acid Chemical compound COC(=O)C=C.CC(=C)C(O)=O IQSHMXAZFHORGY-UHFFFAOYSA-N 0.000 description 1
- BAVYZALUXZFZLV-UHFFFAOYSA-N methylamine Chemical compound NC BAVYZALUXZFZLV-UHFFFAOYSA-N 0.000 description 1
- MGJXBDMLVWIYOQ-UHFFFAOYSA-N methylazanide Chemical compound [NH-]C MGJXBDMLVWIYOQ-UHFFFAOYSA-N 0.000 description 1
- YACKEPLHDIMKIO-UHFFFAOYSA-L methylphosphonate(2-) Chemical compound CP([O-])([O-])=O YACKEPLHDIMKIO-UHFFFAOYSA-L 0.000 description 1
- CSNNHWWHGAXBCP-UHFFFAOYSA-L mgso4 Chemical compound [Mg+2].[O-][S+2]([O-])([O-])[O-] CSNNHWWHGAXBCP-UHFFFAOYSA-L 0.000 description 1
- 230000000813 microbial Effects 0.000 description 1
- 239000003094 microcapsule Substances 0.000 description 1
- 239000007932 molded tablet Substances 0.000 description 1
- 238000010172 mouse model Methods 0.000 description 1
- AMQJEAYHLZJPGS-UHFFFAOYSA-N n-pentanol Chemical compound CCCCCO AMQJEAYHLZJPGS-UHFFFAOYSA-N 0.000 description 1
- 239000002105 nanoparticle Substances 0.000 description 1
- 229920005615 natural polymer Polymers 0.000 description 1
- 230000003472 neutralizing Effects 0.000 description 1
- 125000004433 nitrogen atoms Chemical group N* 0.000 description 1
- ALXIFCUEJWCQQL-UHFFFAOYSA-N nonan-2-amine Chemical compound CCCCCCCC(C)N ALXIFCUEJWCQQL-UHFFFAOYSA-N 0.000 description 1
- 230000000269 nucleophilic Effects 0.000 description 1
- 238000005935 nucleophilic addition reaction Methods 0.000 description 1
- HBXNJMZWGSCKPW-UHFFFAOYSA-N octan-2-amine Chemical compound CCCCCCC(C)N HBXNJMZWGSCKPW-UHFFFAOYSA-N 0.000 description 1
- 239000003921 oil Substances 0.000 description 1
- 235000019198 oils Nutrition 0.000 description 1
- 238000006772 olefination reaction Methods 0.000 description 1
- 229940005935 ophthalmologic Antibiotics Drugs 0.000 description 1
- 125000001181 organosilyl group Chemical group [SiH3]* 0.000 description 1
- ZCQWOFVYLHDMMC-UHFFFAOYSA-N oxazole Chemical compound C1=COC=N1 ZCQWOFVYLHDMMC-UHFFFAOYSA-N 0.000 description 1
- 230000001590 oxidative Effects 0.000 description 1
- 125000001820 oxy group Chemical group [*:1]O[*:2] 0.000 description 1
- 229910052760 oxygen Inorganic materials 0.000 description 1
- 239000001301 oxygen Substances 0.000 description 1
- RZVAJINKPMORJF-UHFFFAOYSA-N p-acetaminophenol Chemical compound CC(=O)NC1=CC=C(O)C=C1 RZVAJINKPMORJF-UHFFFAOYSA-N 0.000 description 1
- 125000000636 p-nitrophenyl group Chemical group [H]C1=C([H])C(=C([H])C([H])=C1*)[N+]([O-])=O 0.000 description 1
- RFWLACFDYFIVMC-UHFFFAOYSA-D pentacalcium;[oxido(phosphonatooxy)phosphoryl] phosphate Chemical compound [Ca+2].[Ca+2].[Ca+2].[Ca+2].[Ca+2].[O-]P([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O.[O-]P([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O RFWLACFDYFIVMC-UHFFFAOYSA-D 0.000 description 1
- 150000002978 peroxides Chemical class 0.000 description 1
- 230000003094 perturbing Effects 0.000 description 1
- 125000000286 phenylethyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])C([H])([H])* 0.000 description 1
- ACVYVLVWPXVTIT-UHFFFAOYSA-M phosphinate Chemical compound [O-][PH2]=O ACVYVLVWPXVTIT-UHFFFAOYSA-M 0.000 description 1
- OAICVXFJPJFONN-UHFFFAOYSA-N phosphorus Chemical compound [P] OAICVXFJPJFONN-UHFFFAOYSA-N 0.000 description 1
- 229910052698 phosphorus Inorganic materials 0.000 description 1
- 239000011574 phosphorus Substances 0.000 description 1
- XNGIFLGASWRNHJ-UHFFFAOYSA-L phthalate(2-) Chemical compound [O-]C(=O)C1=CC=CC=C1C([O-])=O XNGIFLGASWRNHJ-UHFFFAOYSA-L 0.000 description 1
- NQRYJNQNLNOLGT-UHFFFAOYSA-N piperidine Chemical compound C1CCNCC1 NQRYJNQNLNOLGT-UHFFFAOYSA-N 0.000 description 1
- 230000036470 plasma concentration Effects 0.000 description 1
- 229920003023 plastic Polymers 0.000 description 1
- 239000004033 plastic Substances 0.000 description 1
- 239000004014 plasticizer Substances 0.000 description 1
- 229920001490 poly(butyl methacrylate) polymer Polymers 0.000 description 1
- 229920000212 poly(isobutyl acrylate) Polymers 0.000 description 1
- 229920000205 poly(isobutyl methacrylate) Polymers 0.000 description 1
- 229920000306 polymethylpentene Polymers 0.000 description 1
- 229920005862 polyol Polymers 0.000 description 1
- 150000003077 polyols Chemical class 0.000 description 1
- 235000010482 polyoxyethylene sorbitan monooleate Nutrition 0.000 description 1
- 239000000244 polyoxyethylene sorbitan monooleate Substances 0.000 description 1
- 235000010483 polyoxyethylene sorbitan monopalmitate Nutrition 0.000 description 1
- 239000000249 polyoxyethylene sorbitan monopalmitate Substances 0.000 description 1
- 235000010989 polyoxyethylene sorbitan monostearate Nutrition 0.000 description 1
- 239000001818 polyoxyethylene sorbitan monostearate Substances 0.000 description 1
- 235000010988 polyoxyethylene sorbitan tristearate Nutrition 0.000 description 1
- 239000001816 polyoxyethylene sorbitan tristearate Substances 0.000 description 1
- 229920000182 polyphenyl methacrylate Polymers 0.000 description 1
- 108010026466 polyproline Proteins 0.000 description 1
- 229940101027 polysorbate 40 Drugs 0.000 description 1
- 229940113124 polysorbate 60 Drugs 0.000 description 1
- 229920000053 polysorbate 80 Polymers 0.000 description 1
- 239000004810 polytetrafluoroethylene Substances 0.000 description 1
- 229920001343 polytetrafluoroethylene Polymers 0.000 description 1
- 229920002451 polyvinyl alcohol Polymers 0.000 description 1
- ZLMJMSJWJFRBEC-UHFFFAOYSA-N potassium Chemical compound [K] ZLMJMSJWJFRBEC-UHFFFAOYSA-N 0.000 description 1
- 239000011591 potassium Substances 0.000 description 1
- 229910052700 potassium Inorganic materials 0.000 description 1
- 159000000001 potassium salts Chemical class 0.000 description 1
- 229920001592 potato starch Polymers 0.000 description 1
- 150000003141 primary amines Chemical class 0.000 description 1
- KYQCOXFCLRTKLS-UHFFFAOYSA-N pyrazine Chemical compound C1=CN=CC=N1 KYQCOXFCLRTKLS-UHFFFAOYSA-N 0.000 description 1
- WTKZEGDFNFYCGP-UHFFFAOYSA-N pyrazole Chemical compound C=1C=NNC=1 WTKZEGDFNFYCGP-UHFFFAOYSA-N 0.000 description 1
- KAESVJOAVNADME-UHFFFAOYSA-N pyrrole Chemical compound C=1C=CNC=1 KAESVJOAVNADME-UHFFFAOYSA-N 0.000 description 1
- 230000000268 renotropic Effects 0.000 description 1
- 229920005989 resin Polymers 0.000 description 1
- 239000011347 resin Substances 0.000 description 1
- 230000000241 respiratory Effects 0.000 description 1
- 230000004044 response Effects 0.000 description 1
- 238000007363 ring formation reaction Methods 0.000 description 1
- 150000003335 secondary amines Chemical class 0.000 description 1
- BUGBHKTXTAQXES-UHFFFAOYSA-N selenium Chemical compound [Se] BUGBHKTXTAQXES-UHFFFAOYSA-N 0.000 description 1
- 229910052711 selenium Inorganic materials 0.000 description 1
- 239000011669 selenium Substances 0.000 description 1
- 238000000926 separation method Methods 0.000 description 1
- 239000008159 sesame oil Substances 0.000 description 1
- 235000011803 sesame oil Nutrition 0.000 description 1
- 239000004208 shellac Substances 0.000 description 1
- 229940113147 shellac Drugs 0.000 description 1
- 235000013874 shellac Nutrition 0.000 description 1
- 231100000486 side effect Toxicity 0.000 description 1
- 125000003808 silyl group Chemical group [H][Si]([H])([H])[*] 0.000 description 1
- 235000021309 simple sugar Nutrition 0.000 description 1
- 239000002002 slurry Substances 0.000 description 1
- 210000000813 small intestine Anatomy 0.000 description 1
- 150000003385 sodium Chemical class 0.000 description 1
- YOQDYZUWIQVZSF-UHFFFAOYSA-N sodium borohydride Substances [BH4-].[Na+] YOQDYZUWIQVZSF-UHFFFAOYSA-N 0.000 description 1
- 229910000033 sodium borohydride Inorganic materials 0.000 description 1
- 235000019333 sodium laurylsulphate Nutrition 0.000 description 1
- 229960001922 sodium perborate Drugs 0.000 description 1
- 239000008109 sodium starch glycolate Substances 0.000 description 1
- 229940079832 sodium starch glycolate Drugs 0.000 description 1
- 229920003109 sodium starch glycolate Polymers 0.000 description 1
- ODGROJYWQXFQOZ-UHFFFAOYSA-N sodium;boron(1-) Chemical compound [B-].[Na+] ODGROJYWQXFQOZ-UHFFFAOYSA-N 0.000 description 1
- 239000007901 soft capsule Substances 0.000 description 1
- 239000007909 solid dosage form Substances 0.000 description 1
- 238000000371 solid-state nuclear magnetic resonance spectroscopy Methods 0.000 description 1
- 239000008347 soybean phospholipid Substances 0.000 description 1
- QIQXTHQIDYTFRH-UHFFFAOYSA-M stearate Chemical compound CCCCCCCCCCCCCCCCCC([O-])=O QIQXTHQIDYTFRH-UHFFFAOYSA-M 0.000 description 1
- 239000008117 stearic acid Substances 0.000 description 1
- 125000004079 stearyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- 230000000707 stereoselective Effects 0.000 description 1
- 125000001424 substituent group Chemical group 0.000 description 1
- 125000000547 substituted alkyl group Chemical group 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- 150000008163 sugars Chemical class 0.000 description 1
- 125000000472 sulfonyl group Chemical group *S(*)(=O)=O 0.000 description 1
- 150000003462 sulfoxides Chemical class 0.000 description 1
- NINIDFKCEFEMDL-UHFFFAOYSA-N sulfur Chemical compound [S] NINIDFKCEFEMDL-UHFFFAOYSA-N 0.000 description 1
- 229910052717 sulfur Inorganic materials 0.000 description 1
- 239000011593 sulfur Substances 0.000 description 1
- 239000002511 suppository base Substances 0.000 description 1
- 239000000375 suspending agent Substances 0.000 description 1
- 229920001059 synthetic polymer Polymers 0.000 description 1
- BCNZYOJHNLTNEZ-UHFFFAOYSA-N tert-butyldimethylsilyl chloride Chemical compound CC(C)(C)[Si](C)(C)Cl BCNZYOJHNLTNEZ-UHFFFAOYSA-N 0.000 description 1
- 125000005931 tert-butyloxycarbonyl group Chemical group [H]C([H])([H])C(OC(*)=O)(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- FZWLAAWBMGSTSO-UHFFFAOYSA-N thiazole Chemical compound C1=CSC=N1 FZWLAAWBMGSTSO-UHFFFAOYSA-N 0.000 description 1
- 150000007970 thio esters Chemical class 0.000 description 1
- YTPLMLYBLZKORZ-UHFFFAOYSA-N thiophene Chemical compound C=1C=CSC=1 YTPLMLYBLZKORZ-UHFFFAOYSA-N 0.000 description 1
- JOXIMZWYDAKGHI-UHFFFAOYSA-M toluene-4-sulfonate Chemical class CC1=CC=C(S([O-])(=O)=O)C=C1 JOXIMZWYDAKGHI-UHFFFAOYSA-M 0.000 description 1
- 239000003440 toxic substance Substances 0.000 description 1
- 150000003626 triacylglycerols Chemical class 0.000 description 1
- 150000003852 triazoles Chemical class 0.000 description 1
- UORVGPXVDQYIDP-UHFFFAOYSA-N trihydridoboron Substances B UORVGPXVDQYIDP-UHFFFAOYSA-N 0.000 description 1
- 235000019801 trisodium phosphate Nutrition 0.000 description 1
- 235000015112 vegetable and seed oil Nutrition 0.000 description 1
- 239000008158 vegetable oil Substances 0.000 description 1
- 239000012178 vegetable wax Substances 0.000 description 1
- 125000000391 vinyl group Chemical group [H]C([*])=C([H])[H] 0.000 description 1
- 230000007279 water homeostasis Effects 0.000 description 1
- 238000005303 weighing Methods 0.000 description 1
- 239000000080 wetting agent Substances 0.000 description 1
Classifications
-
- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01N—PRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
- A01N43/00—Biocides, pest repellants or attractants, or plant growth regulators containing heterocyclic compounds
- A01N43/90—Biocides, pest repellants or attractants, or plant growth regulators containing heterocyclic compounds having two or more relevant hetero rings, condensed among themselves or with a common carbocyclic ring system
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7042—Compounds having saccharide radicals and heterocyclic rings
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7042—Compounds having saccharide radicals and heterocyclic rings
- A61K31/7048—Compounds having saccharide radicals and heterocyclic rings having oxygen as a ring hetero atom, e.g. leucoglucosan, hesperidin, erythromycin, nystatin, digitoxin or digoxin
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/10—Antimycotics
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H17/00—Compounds containing heterocyclic radicals directly attached to hetero atoms of saccharide radicals
- C07H17/04—Heterocyclic radicals containing only oxygen as ring hetero atoms
- C07H17/08—Hetero rings containing eight or more ring members, e.g. erythromycins
Abstract
Provided are certain derivatives of amphotericin B (AmB) characterized by reduced toxicity and retained anti-fungal activity. Certain of the derivatives are C16 urea derivatives of AmB. In particular, the present invention provides a compound, or a pharmaceutically acceptable salt thereof, selected from the group consisting of AmBMU, AmBAU, and AmBCU. Also provided are methods of making AmB derivatives of the invention, pharmaceutical compositions comprising AmB derivatives of the invention, and use of AmB derivatives of the invention in the manufacture of medicaments. d from the group consisting of AmBMU, AmBAU, and AmBCU. Also provided are methods of making AmB derivatives of the invention, pharmaceutical compositions comprising AmB derivatives of the invention, and use of AmB derivatives of the invention in the manufacture of medicaments.
Description
W0 20151054148 PCT/U82014/059334
AMPHOTERICINB DERIVATIVES WITHIMPROVED
THERAPEUTICINDEX
RELATED APPLICATIONS
This application claims benefit of U.S. Provisional Patent Application No.
61/887,729, filed r 7, 2013, and U.S. Provisional Patent ation No. 62/045,956,
filed September 4, 2014.
BACKGROUND OF THE INVENTION
For more than half a century amphotericin B (AmB) has served as the gold rd
for treating systemic fungal infections. AmB has a broad spectrum of activity, is
fungicidal, and is effective even against fungal strains that are resistant to multiple other
agentsm Surprisingly, clinically significant microbial resistance has remained
exceptionally rarem while resistance to next generation ngals has appeared within just
3]
a few years of their clinical introductionpe’ Unfortunately, AmB is also highly toxic.[4]
Thus, the effective treatment of systemic fungal infections is all too often precluded, not by
a lack of efficacy, but by dose-limiting side effectsm Some progress has been made using
liposome delivery systems,[6] but these treatments are prohibitively expensivem and
cant toxicities remain.[8] Thus, a less toxic, but equally effective AmB derivative
stands to have a major impact on human health.
SUMMARY OF THE INVENTION
An aspect of the ion is AmBMU or a pharmaceutically acceptable salt thereof
AmBMU.
An aspect of the invention is AmBAU or a aceutically able salt thereof
WO 2013054148
AmBAU.
An aspect of the invention is AmBCU or a phannaceutically acceptable salt thereof
AmBCU.
An aspect of the invention is C3deOAmB or a pharmaceutically acceptable salt
thereof
C3deOAmB.
An aspect of the invention is B or a pharmacoutically acccptablc salt
thereof
PCT/U52014/059334
C9deOAmB.
An aspect of the ion is C5deOAmB or a pharmaceutically acceptable salt
WOHMe
OH NH2
CSdCOAmB.
An aspect of the invention is C8deOAmB or a pharmaceutically acceptable salt
thereof
C8deOAmB.
An aspect of the invention is Cl ldeOAmB or a pharmaceutically acceptable salt
thereof
C1ldeOAmB.
An aspect of the invention is Cl3deOAmB or a pharmaceutically acceptable salt
thereof
W0 20152054148 2014/059334
C13deOAmB.
An aspect of the invention is ClSdeOAmB or a pharmaceutically acceptable salt
thereof
C15deOAmB.
An aspect of the invention is C3 ’deNHgAmB amino AmB; C3’deAAmB) or a
pharmaceutically acceptable salt thereof
C3'deNHzAmB.
An aspect of the invention is C4’deOAmB or a pharmaceutically acceptable salt
thereof
PCT/U82014/059334
C4'deOAmB.
An aspect of the invention is Compound X
0WOHMe
OH NHFmoc
An aspect of the invention is nd 1
OH NHFmoc
An aspect of the invention is a method of making compound 1 as disclosed in the
I0 specification and drawings.
An aspect of the invention is a method of making a C16 urea derivative of
amphotcricin B according to any one of the six transformations shown in Scheme 2:
W0 20152054148 PCT/U82014/059334
Alkyl NH;
Carbamates 0”
BranchedWNHZ
Ureas 0“
Scheme 2
and each R is independently selected from the group consisting of en, halogen,
straight- or branched-chain alkyl, cycloalkyl, cycloalkylalkyl, heterocyclyl, arylfl heteroaryl,
aralkyl, heteroaralkyl, hydroxyl, sulfhydryl, yl, amino, amido, azido, nitro, cyano,
aminoalkyl, and alkoxyl.
An aspect of the invention is a method of making AmBMU as disclosed in the
specification and drawings.
2014/059334
An aspect of the invention is a method of making AmBAU as disclosed in the
cation and gs.
An aspect of the invention is a method of making AmBCU as disclosed in the
specification and drawings.
An aspect of the invention is a method of making C3deOAmB as disclosed in the
cation and drawings.
An aspect of the invention is a method of making C9deOAmB as disclosed in the
specification and drawings.
An aspect of the invention is a method of making C5deOAmB as disclosed in the
specification and drawings.
An aspect of the invention is a method ofmaking C8deOAmB as disclosed in the
specification and gs.
An aspect of the invention is a method of making C1 1deOArnB as disclosed in the
specification and drawings.
An aspect of the invention is a method of making Cl3deOAmB as disclosed in the
specification and drawings.
An aspect of the invention is a method of making C15deOAmB as sed in the
specification and drawings.
An aspect of the invention is a method of making C3 ’deNHzArnB as disclosed in the
specification and drawings.
An aspect of the invention is a method of making C4’deOAmB as disclosed in the
cation and drawings.
An aspect of the ion is a method of inhibiting growth of a fungus, comprising
contacting a fungus with an effective amount of a nd selected from the group
consisting U, AmBAU, AmBCU, C3deOAmB, CSdeOAmB, C8de0AmB,
C9chArnB, C l lchAmB, C13chAmB, C lSchAmB, C3 ’chHzAmB, and
C4’deOArnB, and pharmaceutically acceptable salts thereof.
An aspect of the invention is a method of treating a fungal infection in a subject,
comprising administering to a subject in need thereof a therapeutically effective amount of
a compound selected from the group consisting ofAmBMU, AmBAU, AmBCU,
C3deOAmB, CSdeOAmB, CSdeOAmB, C9deOAmB, Cl ldeOAmB, Cl 3deOAmB,
C15deOAmB, C3 ’deNHzAmB, and C4’deOAmB, and pharmaceutically acceptable salts
thereof.
WO 2015054148 PCT/US20141059334
In one ment, the compound is administered orally or intravenously.
In one embodiment, the nd is administered orally.
In one embodiment, the compound is administered intravenously.
An aspect of the invention is a pharmaceutical composition, sing a compound
of selected from the group consisting ofAmBMU, AmBAU, AmBCU, C3deOAmB,
CSdeOAmB, C8deOAmB, C9deOAmB, C11deOAmB, C13deOAmB, C15deOAmB,
C3’deNH2AmB, and AmB, and pharmaceutically acceptable salts thereof; and a
pharmaceutically acceptable carrier.
In one embodiment, the pharmaceutical composition is an oral or intravenous
dosage form.
In one ment, the pharmaceutical composition is an oral dosage form.
In one ment, the pharmaceutical composition is an intravenous dosage form.
BRIEF DESCRIPTION OF THE DRAWINGS
Figure 1 depicts structural formulas ofAmB and certain tives f.
Figure 2 depicts a number of synthetic schemes for preparing C16 amino AmB
derivatives by reacting urea 1 with any of a wide range of heteroatom nucleophiles.
Figure 3A depicts a retrosynthetic analysis ofAmB based on an ive cross
coupling strategy using four building blocks, BB1, BB2, BB3, and BB4.
Figure 3B depicts a scheme for retrosynthetic analysis of B81 into two smaller
fragments.
Figure 4A depicts a scheme for stereoselective hydroboration of BB1 to install the
C11 stereocenter.
Figure 4B depicts a scheme for hydroboration of C9—dcoxy BB1 rcsulting in a
mixture of diastereomers at C11.
Figure 5 depicts a generic synthesis ofCSdeOAmb using a degradative strategy.
Figure 6 depicts total synthesis ofAmB via iterative cross-coupling.
Figure 7A depicts a retrosynthetic analysis of C5deOAmB leading to four building
blocks, BB], BB2, BB3, and BB4.
Figure 7B depicts a scheme for retrosynthetic analysis of C5deOBB1 into two
smaller fragments.
Figure 8A depicts a retrosynthetic is of C8deOAmB leading to four ng
blocks, BB1, BB2, BB3, and BB4.
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Figure SB s a scheme for retrosynthetic analysis of C8deOBBl based on
ion of 47.
Figure 9A depicts a retrosynthetic analysis of C9deOAmB leading to four ng
, BB1, BB2, BB3, and BB4.
Figure 9B depicts a scheme for retrosynthetic analysis of C9deOBBl into two
smaller fragments.
Figure 10A depicts a retrosynthetic analysis of Cl B leading to four
building , BB1, BB2, BB3, and BB4.
Figure 10B depicts a scheme for retrosynthetic analysis of Cl ldeOBBl into two
smaller fragments.
Figure 11 depicts a degradative strategy to synthesize of CleeOAmb.
Figure 12 depicts an iterative cross-coupling-based strategy for synthesis of
C l SdeOAmB.
Figure 13 depicts a selective acylation strategy for synthesis of ClSdeOAmB.
Figure 14 depicts a scheme for synthesis of C3 ’—deamino AmB (C3’deAAmB)
using a hybrid glyeosidation strategy.
Figure 15 depicts a scheme for synthesis of C4'deOAmB Via a hybrid glycosylation
Figure 16 depicts Scheme 3, a scheme for synthetic efforts toward C3—deoxy AmB
(C3deOArnb).
Figure 17 depicts Scheme 4, a scheme for sis of left half of BB] and efficient
coupling ofBBl to BBZ.
Figure 18 depicts Scheme 5, a scheme for synthesis of C9-deoxy AmB ning
proper oxidation states and stereochemistry at each carbon.
Figure 19 depicts Scheme 6 in accordance with Example 1.
Figure 20 depicts Scheme 7 in accordance with e 2.
Figure 21 depicts Scheme 8 in accordance with Example 2.
Figure 22 depicts Scheme 9 in accordance with Example 2.
Figure 23 depicts Scheme 10 in accordance with Example 2.
Figure 24 depicts Scheme 11 in accordance with Example 2.
Figure 25 depicts Scheme 12 in accordance with Example 2.
Figure 26 depicts Scheme 14 in accordance with Example 3.
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Figure 27 depicts Scheme 15 in accordance with Example 4.
Figure 28 depicts Scheme 16 in accordance with Example 4.
Figure 29 depicts Scheme 17 in accordance with-Example 5.
Figure 30 depicts Scheme 18 in accordance with e 5.
Figure 31 depicts Scheme 20 in accordance with Example 6.
Figure 32 depicts Scheme 2] in accordance with Example 7.
Figure 33 depicts Scheme 22 in accordance with Example 8.
Figure 34 depicts Scheme 23 in accordance with Example 8.
Figure 35 depicts Scheme 24 in accordance with e 8.
Figure 36 depicts Scheme 25 in accordance with Example 9.
Figure 37 depicts Scheme 26 in accordance with Example 10.
Figure 38 depicts Scheme 27 in accordance with Example 11.
Figure 39 is a group of three graphs depicting kidney fungal load y forming
units, cfu) in neutropenic mice ated intravenously with C. ans and then d
two hours later with a single intraperitoneal dose of vehicle control, AmB, AmBMU, or
AmBAU. Figure 39A, 1 mg/kg AmB, AmBMU, or AmBAU. Figure 39B, 4 mg/kg AmB,
AmBMU, or AmBAU. Figure 39C, 16 mg/kg AmB, AmBMU, or AmBAU.
Figure 40 is a graph depicting lethality in y mice of single intravenous
administration in the doses indicated ofAmB, AmBMU, or AmBAU.
DETAILED DESCRIPTION
A lack of understanding of the mechanism(s) by which AmB is toxic to yeast and
human cells has thus far hindered the rational development of a clinically successful
derivative. The longstanding accepted mechanism of action of AmB has been ion channel
formation within a cell’s membrane leading to electrochemical gradient disruption and
eventually cell deathm’ 9] This model suggests that development of a less toxic derivative
requires selective ion l formation in yeast versus human cells.[1°] Contrary to this
longstanding model, our group recently discovered that the primary mechanism of action of
AmB is not ion channel formation, but simple erol bindingm] Gray, KC et al., Proc
Natl Acaa’ Sci USA 109:2234 (2012). Yeast and human cells possess different s,
ergosterol and cholesterol, respectively. Therefore, the new model suggests a simpler and
more actionable roadmap to an improved therapeutic index; i.e., a less toxic AmB
derivative would retain potent ergosterol binding capability, but lack the ability to bind
~10.
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cholesterol. Recently our group reported that removal of the C2’ hydroxyl group from the
mycosamine sugar produced a tive, C2’deOAmB (Figure 1), which surprisingly
retains ergosterol—binding y, but shows no binding to cholesterol. Wilcock, BC et al., J
Am Chem Soc 13528488 (2013). tent with the preferential sterol binding hypothesis,
in vitro studies demonstrated that C2’deOAmB is toxic to yeast, but not human cells.
To explain why removal of the C2’ alcohol results in loss of cholesterol binding
ability, while maintaining efficient ergosterol binding, we hypothesized that the AmB
structure exists in a ground state conformation capable of binding both sterols. Removal of
the C2’ alcohol potentially results in a conformational change of the AmB ure which
retains ergosterol binding ability but is incapable of binding cholesterol. A generic
molecule is e of binding two different s in a common binding site.
Modification at a site distal to the binding pocket alters the binding site conformation. This
principle of allosteric modification causes preferential binding ofone ligand over the other.
To our knowledge, such ligand-selective allosteric effects have not been previously
ed in small molecule—small molecule interactions. Encouragingly, ligand selective
eric modifications have been observed in proteins which bind multiple ligands in a
common binding sitem] We thus hypothesized that removal of the C2’ alcohol
allosterically modifies the sterol binding pocket, accounting for the decrease in terol
g ability.
Interestingly, we noticed in a previously obtained X—ray crystal structure ofN-
iodoacyl AmB a prominent water bridged hydrogen bond g the C2’ alcohol to the C13
hemiketa|.[l4] We recognized that if such a water d hydrogen bond helped rigidity the
ground state conformation of AmB, it would follow that removal of the C2’ alcohol
abolishes this interaction and thereby potentially enables on of an alternative ground
state conformers having altered affinities for cholesterol and ergosterol. Intrigued by this
capacity of the crystal structure to potcntially rationalizc our observations with
C2’deOAmB, we hypothesized that this crystal structure may represent the ground state
conformation ofAmB which is capable of binding both ergosterol and cholesterol.
Following this logic, we proposed that disruption or removal of any other rigidifying
features observed in the crystal structure might similarly allow access to alternative ground
state conformations and y alter the AmB sterol binding profile. Guided by this logic,
l inspection of the X-ray crystal structure revealed three additional intramolecular
rigidifying es with the potential of stabilizing the AmB ground state: 1) a salt bridge
W0 201511154148
n the C41 carboxylate and C3’ ammonium, 2) a 1,3,5 hydrogen bonding network
between C1 carbonyl 0, C3 and C5 alcohols, and 3) a 1,3,5 hydrogen bonding network
between the C9, C11, and C13 alcohols. We thus set out to atically interrogate the
consequences of perturbing each of these intramolecular stabilizing features to test the
validity of the allosteric modification model as a new way to ally access AmB
derivatives with an improved therapeutic index.
New Allosteric Site #1: C41-C3 ’ Carboxylate
The salt bridge interaction is the energetically strongest of the proposed rigidifying
features. Thus, atic modification of the group appended to the C16 carbon was
targeted as the first series of derivatives to further probe this allosteric cation model.
Multiple AmB derivatives ing the C41 carboxylate have been reported including
“ 106’ b] However, all previous AmB derivatives maintain
esters and amides among others.[
a carbon atom ed to the C16 carbon. We hypothesized that appending a heteroatom
to the C16 carbon would have a great impact on the salt bridge interaction. Therefore, we
sought an efficient, chemoselective synthetic strategy to gain access to such a derivative.
Complicating such a goal, AmB possesses a dense array of complex and sensitive
functional groups, making the direct synthesis of derivatives difficult.
In accordance with the ion, we discovered that a short three—step sequence of
Fmoc protection, methyl ketal formation, and Curtius rearrangement, promoted by diphenyl
phosphoryl azide, es an intermediate isocyanate which is trapped intramolecularly to
generate oxazolidinone 1 (Scheme 0116]
PCT/U82014/059334
Scheme 1: Synthesis of C16 AmB tives
1. FmocONSuccinimide
2. CSA, MeOH
3. DF'PA, Et3N
THF 50°C 3-ste 44°/
1. H2NCH20H2NH2 1. HzNMe 1. B-Alanine ster-HCI;
THF 40°C; THF 23°C; HCOZH, H20
HCOZH. H20 HCOQH, H20 2. 3)4, Thiosalicylic Acid
(42%) (36%) (17% 2-step)
“ °
OH 0,, l1
N N/\)J\OH
H H
0 0 Ma.
4 NH;
AmBCU 0”
This facile sequence quickly generates gram quantities of versatile intermediate 1 in
a ehemoseleetive manner from AmB. Interception of 1 with a variety of amine nucleophiles
efficiently opens the oxazolidinonc while concomitantly ng the Fmoe protecting
group. For example, exposure of 1 to ethylene diamine, followed by methyl ketal ysis
in acidic water generates aminoethylurea (AmBAU) 2 in 42% yield.“71 Similarly, utilizing
methylamine accesses methyl urea (AmBMU) 3 in 36% yield from 1. Exposure of 1 to B—
e allylester followed by allyl removal with 3)4 and thiosalicylic acid yields
ethylcarboxylateurea (AmBCU) 4. This versatile synthetic strategy allows efficient access
to a diverse array of AmB urea derivatives and is capable of generating large quantities of
urea derivatives due to its synthetic ency.
With efficient access to this novel AmB ehemotype, ureas 2-4 were compared to
AmB and a range of previously reported AmB derivatives in an in. vitro antifilngal and
human cell ty screen. Yeast toxicity was measured with broth microdilution assays
(MIC) against Saccharomyces cerevisz'ae. Human cell toxicity was studied by determining
the amount of compound required to cause 90% hemolysis of human erythrocytes (EH90).
These results are summarized in Table l. Amphotericin B inhibits S. cerevz'sz'ae growth at
0.5 uM while 90% red blood cell lysis occurs at only 10.4 uM. Removal of mycosamine
(AmdeB) completely abolishes cell—killing activity in both yeast and human cell assaysuse‘
-13_
18] Methyl esterification (AmBME) retains antifungal activity
at 0.25 M against S.
cerevz‘siae, while decreasing hemolysis tration to one third that seen with AmB.
C41MethylAmB shows, similar to AmBME, an MIC of 0.5 uM while causing hemolysis at
22.0 °’ 18] As previously observed, simple amidation to form amino amide AmB
derivative AmBAA or methyl amide ArnBMA increased potency against yeast to 0.03 uM
and 0.25 M respectively. Hemolysis activity remained similar to AmBME and
C4lMeAmB. Bis—amino alkylated amide derivative AmBNRz was previously shown to
moderately improve the therapeutic index.[19] Consistent with precedent, AmBNRz shows
increased antifungal activity ed to AmB, while requiring elevated trations to
cause hemolysis at 48.5 M.
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Table 1: In vitro biological activity of ArnB tives
we M
Name EH90 {fl-M3
Compound sfiemifisiig red biood ceits
AmB 045 10.37 ¢ 13??
Amdafi >538 >50!)
AmBME 0.25 30.57 3 5.38
C!“Mefimfi 8‘5 23.33 :2 $26
AmflAA 8.03 33396 :c 8‘85
ANBMA 8.35 75.32 3: 339'
AmflNRz 0.25 48.5 a: 3‘?
AmBMU 9‘28 .‘afiflfl
AmBAU 8.125 >589
AmBCU 3 323.6 :3: 36.2
Urea derivatives 2-4 in potent antifiingal activity ranging from 0.125 M to 3
uM against S. cerevisiae. Surprisingly, 2-4 possessed drastically decreased toxicity towards
red blood cells. AmBMU and AmBAU did not reach an EH90 even at 500 uM, greater than
45x that observed with AmB. AmBCU required 324 nM to cause 90% hemolysis in red
blood cells, more than 30x ed by AmB. Encouraged by this initial therapeutic index
screen the urea series was further tested against the clinically relevant fungal cell line
Candida albicans. C. albicans is the most common human fungal infection. AmB inhibits
yeast grown of C. albicans at 0.25 M. Similar to the trend seen with S. siae, the
potency of urea derivatives 3—5 increased with increasing amount of cationic character.
AmBAU, AmBMU, and AmBCU require 0.25, 0.5, and 1 uM respectively (Table 2).
Table 2: In vitro antifungal activity ofAmB urea derivatives t C. albicans
mm M... .m...
Following the allosteric modification model, ureas 2-4 are hypothesized to maintain
I5 potent ergosterol g ability, yet have lost the y to bind cholesterol. To test this
hypothesis a solid-state NMR assay is currently underway to determine binding constants of
AmBMU, as a representative of the novel urea class, to both erol and cholesterol.
The strategy presented above can be used to access a wide variety of AmB
derivatives with an amine appended to the C16 on. The opening of oxazolidinone 1
with a variety of nucleophiles (e.g., , alcohols, and phenols) could efficiently access
a wide range ofurea or carbamate derivatives. A small subset of the possible accessible
derivatives is outlined in Scheme 2 (Figure 2). Oxazolidinone 1 could be intercepted with
y amines to generate primary ureas, secondary amines to generate secondary ureas,
and primary amines with alpha branching to create ureas with chemistry introduced at
the alpha position. Additionally, oxazolidinone 1 could be opened with anilines to create
aryl ureas, phenols to create aryl carbamates, or alcohols to generate alkyl carbamates.
Examples of amines include, without tion, l—(l-Naphthyl)ethylamine; l-(2-
Naphthyl)ethylamine; 1-(4-Bromophenyl)ethylamine; 1,1~Diphenylaminopropane; 1,2,2—
Triphenylethylamine; 1,2,3,4-Tetrahydro-l-naphthylamine; l,2-Bis(2-
hydroxyphenyl)ethylenediamine; l-Amino-2~benzyloxycyclopentane; l-Aminoindane; 1—
-16—
—2,2—diphenylethylamine; 1-Cyclopropylethylamine; 1 —Phenylbutylamine; 2—(3 —
Chloro-2,2-dimethyl—propionylamino)methylbutanol; 2-
(Dibenzylamino)propionaldehyde; 2,2-Dimethyl—5-methylaminophenyl-1,3-dioxane; 2-
Amino- 1 —f1uoromethyl- 1 ,1 —diphenylpentane; 2-Amino—3 ,3-dimethy1- 1 1 -diphenylbutane;
2-Amino—3—methyl-1 , 1 —diphenylbutane; 2-Amino-3 —methylbutane; 2-Amino—4-methyl- 1 ,1—
diphenylpentane; oheptane; 2-Aminohexane; 2-Aminononane; 2-Aminooctane; 2—
Chlorefluor0benzylamine; oxy—a—methylbenzylamine; 2-Methylbutylamine; 2—
Methylbutylamine; 3,3-Dimethyl—2—butylamine; methoxy—or-methylbenzylamine; 3—
Amino(hydroxymethyl)propionic acid; 3~Bromo-a-methylbenzylamine; 3-CthI‘O-CL-
methylbenzylamine; 4~Chloro-0t-methy1benzylamine; 4-Cyelohexene-1,2—diamine; 4—
Fluoro-a—methylbenzylamine; 4-Methoxy-or—methylbenzylamine; 7—Amino-5,6,7,8-
tetrahydro-Z—naphthol; Bis[1 ~phenylethyl] amine; Bornylamine; eis—Z-Aminoeyclopentanol
hydrochloride; cis-Myrtanylamine; cis—N—Boc-Z-aminocyclopentanol;
Isopinocampheylamine; L-Allysine ethylene aeetal; Methyl 3—arninobutyrate p-
toluenesulfonate salt; N,N'—Dimethyl- 1 1 ’-binaphthyldiamine; N,N—Dimethyl— 1 —( l -
naphthyl)ethylamine; N,N—Dimethylphenylethylamine; N,a—Dimethylbenzylamine; N-
allyl-a—methylbenzylamine; N—Benzyl-a-methylbenzylamine; sec—Butylamine; trans-2—
(Aminomethyl)cyclohexanol; transAmino—1,2-dihydro-l-naphthol hydrochloride; trans-
2-Benzyl0xycyelohexylamine; methylbenzylamine; (x-Ethylbenzylarnine; 0t-
Methylbenzylamine; and B-Methylphenethylamine.
New Allasteric Site #2: Cl Carbonyl 0, C3 and C5 Alcohol Hydrogen Bonding Network
Having remarkably developed a second set of derivatives supporting the allosteric
modification model as a guide for ping less toxic AmB tives, the polyol
hydrogen-bonding frameworks were targeted. Ideally, simple removal of either the C3 or
C11 alcohol would completely abolish the observed extended hydrogen-bonding network.
A chemoselective degradative synthesis of either deoxygenated tive is a challenging
synthetic undertaking as chemoselectively targeting one of the nine ary alcohols
present on the ArnB framework is nontrivial. A reaction byproduct hinted that the C3
alcohol could ially be chemoselectively targeted due to its position beta to the C1
carbonyl. Encouraged by this preliminary result, the synthesis of C3deoxyAmB was
pursued.
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A suitable fully ted intermediate was quickly generated from AmB (Scheme
3, Figure 16). This sequence ed Alloc protection of the amine, C3/C5 and C9/C11 p-
methoxyphenyl acetal formation, TES silylation of the remaining alcohols, and lastly
TMSE formation of the C16 carboxylate to form fully protected intermediate 5. Exposure
of 5 to NaHMDS at low temperatures smoothly eliminated the C3 alcohol, generating an d-
[3 unsaturated lactone. Stryker reduction of this intermediate efficiently reduced the
ration yielding 6, leaving only a deprotection sequence to generate mB.
Exposure of 6 to HF cleanly removed the TES groups, followed by TBAF—promoted TMSE
removal. Methyl ketal and PMP ketal hydrolysis was achieved concomitantly under acidic
conditions with HCl. Efforts are currently underway to achieve the final Alloc deprotection
of 7 and synthesize C3deOAmB.
New AZlosteric Site #3: C9, C11, C13 Hydrogen g Network
gh multiple AmB derivatives can be accessed using natural product
I5 degradation, many derivatives are not readily accessible from this platform. An efficient
and e total synthesis would complement degradative synthesis as a platform for
accessing AmB derivativespo] For example, total synthesis is a strategy capable of
generating either C9 or C11 deoxy AmB to probe the final proposed site of allosteric
ation. With this goal in mind, a total sis strategy relying on the efficient and
flexible iterative Suzuki-Miyaura cross coupling (ICC) platform was developed. [21] As
shown in Figure 3A, AmB is rctrosynthctically dividcd into four building blocks (BB1—4).
Using only the Suzuki-Miyaura cross coupling in an iterative fashion we aim to form bonds
between building blocks 1 and 2, 2 and 3, and 3 and 4. Subsequent macrolactonization and
global deprotection would then complete the total synthesis. Using this strategy, synthesis
of C11 deoxy AmB could be ed by simply substituting BB1 with C11 deoxy BB 1,
leaving the remainder of the synthesis unchanged.
In order to e this challenging synthetic undertaking, the synthesis of BB1
preferably will be efficient, scalable, and capable of long-term storage. As shown in Figure
3B, we plan to generate protected BB1 (9) by joining fragments 10 and 11. Hydroboration
of 9 with orane readies it for Suzuki coupling with B82. Two key butions to
this total synthesis effort have been made. First, a scalable route to key fragment 10 was
devised. Then, upon tion of the synthesis of BB1, the cross coupling of BB1 to BB2
in a model system was investigated.
—18-
PCT/U$2014/059334
Three aspects of the initial synthesis of 10 invited improvementm] The existing
route ded in 3% overall yield, required large-scale use of toxic reagents, and
proceeded through intermediates not amenable to erm storage. A second-generation
synthesis of 10 (Scheme 4, Figure 17) was developed to address these issues. Combination
of Chan’s diene and cinnamaldehyde in the presence of a Titanium/BINOL complex
ed an oselective extended aldol reactiondm Then, a sequence ofsyn reduction,
ketaiization, and ozonoiysis generated desired aldehyde 10 with an overall yield of 40%
from 12. This synthesis eliminates le steps, while avoiding unwanted toxic
chemicals. The styrene precursor to 10 proved to be highly crystalline. This property
proved advantageous, as it could be stored for extended periods of time without
decomposition.
With efficient access to 10 established, combination with B—keto phosphonate 11
followed by a 5-step sequence yielded borane 14. With 14 in hand, a reproducible cross
coupling with BB2 was targeted. This transformation was predicted to be the most difficult
I5 in the ICC sequence as it is the only 3 cross coupling. Under anhydrous conditions,
we observed no productive coupling between 14 and BB2 ate 15, in which the sugar
is mimicked with a MOM group. However, addition of 3 equivalents of water, equimolar to
the base, promoted d bond formation. The MIDA boronate on BB2 is stable to these
semi-aqueous reaction ions. These conditions translated to the coupling of BB1 to the
glyeosylated BB2 in a 60-70% yield. t efforts are d on completing the ICC
sequence, maerolactonization, and deprotection.
tive synthesis of AmB using the ICC strategy involves only a simple
swapping of one of the building blocks for a suitable enated building block. As a
demonstration of this inherent flexibility, efforts have been made towards the synthesis of
C9 deoxy BBl. Installation of the Cl l stereoeenter for B81 14 is achieved via a
stereoscleetivc 9BBN hydroboration which proceeds through a chair-like transition state
resulting in only one observed stereochemical outcome (Figure 4A). If the C9 alcohol is
not present, a chair-like transition state is impossible. Therefore, hydroboration would result
in a mixture of diastereomers. To overcome this limitation, 9—deoxy BB1 was assembled
stereoselectively in a linear n starting with a MIDA boronate. This route takes
advantage of the ability of MIDA boronates to withstand a variety of common synthetic
transformations.[24]
PCT/U82014/059334
Starting with allyl MIDA boronate 17, a short sequence of ozonolysis, Brown
allylation, TBS protection, and hydroboration/oxidation resulted in aldehyde 18 (Scheme 5,
Figure 18). During this initial ce it was discovered that a bleach, instead of the
typical en peroxide/sodium hydroxide, oxidative workup of the initial brown
allylation product efficiently oxidized the -boron bond Without decomposition of the
MIDA boronate. Exposure of 18 to lithiated dimethyl methyl phosphonate. followed by
Dess—Martin oxidation, yielded B-keto onate l9. Demonstrating the convergent
nature of the BB1 synthetic strategy, combination of 19 with 10, the same aldehyde used
for fully oxidized BB], in a Homer—Wadsworth—Emmons coupling afforded a-B unsaturated
ester 20. Reduction of the carbonyl with the (IO-CBS st, followed by catalytic
hydrogenation, yielded 21. This C9 deoxy BBl intermediate contains the entire carbon
framework in the correct oxidation state with all of the stereochemistry preinstalled. Only a
TBS protection is required to realize a C9 deoxy BBl analog ready for MIDA boronate
deprotection and coupling with BB2.
nds ofthe Invention
An aspect of the ion is AmBMU or a pharmaceutically acceptable salt thereof
AmBMU.
An aspect of the invention is AmBAU or a pharmaceutically able salt thereof
AmBAU.
An aspect of the invention is AmBCU or a pharmaceutically acceptable salt thereof
AmBCU.
An aspect of the invention is C3deOAmB or a pharmaceutically acceptable salt
thereof
C3deOAmB.
An aspect of the invention is mB or a pharmaceutically acceptable salt
C9deOAmB.
An aspect of the invention is CSdeOAmB or a pharmaceutically acceptable salt
thereof
WO 2013054148
C5deOAmB.
An aspect of the invention is C8deOAmB or a pharmaceutically acceptable salt
thereof
0mmMe
OH NH2
C8deOAmB.
An aspect of the invention is C1 ldeOAmB or a phannaceutically acceptable salt
thereof
AmB.
An aspect of the ion is Cl 3deOAmB or a pharmaceutically acceptable salt
thereof
W0 20152054148 PCT/USZOl4/059334
AmB.
An aspect of the invention is C 1 SdeOArnB or a pharmaceutically acceptable salt
C15deOAmB.
An aspect of the invention is C3 ’deNHgAmB (C3 ’deamino AmB; C3’deAAmB) or a
pharmaceutically acceptable salt thereof
C3'deNHzAmB.
An aspect of the invention is C4’deOAmB or a pharmaceutically acceptable salt
thereof
WO 2013054148 PCT/U52014/059334
C4'deOAmB.
An aspect of the ion is Compound X
0WOHMe
OH NHFmoc
An aspect of the invention is Compound 1
OH NHFmoc
An aspect of the invention is a method of making a C16 urea derivative of
IO amphotericin B according to any one of the six transformations shown in Scheme 2:
Alkyl NHZ
ates
Branched N H2
Ureas 0”
Scheme 2
OH NHFmoc
1; and
each instance of R is ndently selected from the group consisting of hydrogen,
halogen, straight- and branched-chain alkyl, cycloalkyl, cycloalkylalkyl, heterocyclyl, aryl,
heteroaryl, l, heteroaralkyl, hydroxyl, sulfhydryl, carboxyl, amino, amido, azido,
nitro, cyano, aminoalkyl, and alkoxyl.
The term “alkyl” is art-recognized, and includes saturated aliphatic groups,
including straight-chain, alkyl groups, branched-chain alkyl groups, cycloalkyl (alicyclic)
groups, alkyl substituted lkyl groups, and cycloalkyl substituted alkyl groups. in
certain embodiments, a straight—chain or branched—chain alkyl has about 30 or fewer carbon
atoms in its backbone (e.g., C1-C30 for straight chain, C3-C30 for branched chain), and
alternatively, about 20 or fewer. Likewise, cycloalkyls have from about 3 to about 10
carbon atoms in their ring structure, and atively about 5, about 6, or about 7 carbons
in the ring structure.
The terms “alkenyl” and “alkynyl” are art-recognized and refer to unsaturated
aliphatic groups analogous in length and possible substitution to the alkyls described above,
but that contain at least one double or triple bond respectively.
Unless the number of carbons is otherwise specified, “lower alkyl” refers to an alkyl
group, as defined above, but having from one to about ten carbons, alternatively from one
to about six carbon atoms in its backbone ure. Likewise, “lower alkenyl” and “lower
l” have r chain lengths.
The term “aralkyl” is art—recognized and refers to an alkyl group substituted with an
aryl group (i.e., an aromatic or heteroaromatic group).
The term “aryl” is art-recognized and refers to 5—, 6- and 7—membered single-ring
aromatic groups that may include from zero to four heteroatoms, for e, benzene,
naphthalene, anthracene, pyrene, pyrrole, furan, thiophene, imidazole, oxazole, thiazole,
triazole, pyrazole, pyridine, pyrazine, pyridazine and pyrimidine, and the like. Those aryl
groups having heteroatoms in the ring structure may also be referred to as “aryl
cycles” or oaromatics.” The aromatic ring may be substituted at one or more
ring positions with such substituents as, for example, halogen, azide, alkyl, l, alkenyl,
alkynyl, cycloalkyl, hydroxyl, alkoxyl, amino, nitro, sulthydryl, imino, amido,
phosphonate, phosphinate, yl, carboxyl, silyl, ether, alkylthio, yl, sulfonamido,
ketone, aldehyde, ester, heterocyclyl, aromatic or heteroaromatic moieties, -CF3, —CN, or
the like. The term “aryl” also includes polycyclic ring systems having two or more cyclic
rings in which two or more carbons are common to two adjoining rings (the rings are “fused
rings”) wherein at least one of the rings is aromatic, e.g., the other cyclic rings may be
cycloalkyls, cycloalkenyls, cycloalkynyls, aryls and/or heterocyclyls.
The term “heteroatom” is art-recognized and refers to an atom of any element other
than carbon or hydrogen. Illustrative heteroatoms include boron, nitrogen, ,
phosphorus, sulfur and selenium.
The term “nitro” is art-recognized and refers to -N02.
The term “halogen” is art—recognized and refers to -F, -Cl, -Br or -I.
W0 201521154148 PCT/U82014/059334
The term “sulfhydryl” is art—recognized and refers to —SH.
The term “hydroxyl” is art-recognized and refers —OH.
The term “sulfonyl” is art-recognized and refers to -SOz'.
The terms “amine” and “amino” are art—recognized and refer to both unsubstituted
and substituted amines, e.g., a moiety that may be represented by the general as:
R50 I +
-———N —N—R53
\ I
wherein R50, R51 and R52 each independently represent a hydrogen, an alkyl, an
alkenyl, -(CH2)m-R61, or R50 and R51, taken together with the N atom to which they are
attached complete a heterocycle having from 4 to 8 atoms in the ring structure; R61
represents an aryl, a cycloalkyl, a cycloalkenyl, a heterocycle or a polycycle; and m is zero
or an r in the range of l to 8. In other embodiments, R50 and R51 (and optionally
R52) each independently represent a hydrogen, an alkyl, an alkenyl, or -(CH2)m-R61. Thus,
the term “alkylamine” includes an amine group, as defined above, having a tuted or
tituted alkyl attached o, i.e., at least one of R50 and R51 is an alkyl group.
The term “amido” is art recognized as an amino-substituted carbonyl and includes a
moiety that may be represented by the l formula:
A /R51
wherein R50 and R51 are as defined above. Certain embodiments of the amide in the
present invention will not include imides which may be le.
The terms “alkoxyl” or “alkoxy” are art-recognized and refer to an alkyl group, as
defined above, having an oxygen radical attached o. Representative alkoxyl groups
include methoxy, ethoxy, oxy, tert-butoxy and the like.
Also provided are pharmaceutical compositions comprising a compound of the
invention, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable
carrier. Also provided is a method for making such pharmaceutical compositions. The
PCT/USZOl4/059334
method comprises placing a compound of the invention, or a ceutically acceptable
salt thereof, in a pharmaceutically acceptable carrier.
Compounds of the invention and pharmaceutical compositions of the ion are
useful for inhibiting the growth of a fungus. In one embodiment, an effective amount of a
compound of the invention is contacted with a fungus, thereby inhibiting growth of the
fungus. In one ment, a compound of the invention, or a pharmaceutically acceptable
salt thereof, is added to or included in tissue e medium.
Compounds ofthe invention and pharmaceutical itions ofthe invention are
useful for the treatment of fungal infections in a subject. In one embodiment, a
therapeutically effective amount of a compound of the invention, or a pharrnaceutically
acceptable salt thereof, is administered to a subject in need f, thereby treating the
fungal ion.
A fungus is a eukaryotic organism classified in the kingdom Fungi. Fungi include
yeasts, molds, and larger organisms ing mushrooms. Yeasts and molds are of clinical
relevance as infectious .
Yeasts are eukaryotic organisms classified in the kingdom Fungi. Yeasts are
typically described as budding forms of fungi. Of particular importance in connection with
the invention are species of yeast that can cause infections in ian hosts. Such
infections most commonly occur in compromised hosts, including hosts with
compromised barriers to infection (e.g., burn victims) and hosts with compromised immune
systems (e.g., hosts receiving chemotherapy or immune suppressive y, and hosts
infected with HIV). Pathogenic yeasts include, without limitation, various species of the
genus Candida, as well as of Cryptococcus. Of particular note among pathogenic yeasts of
the genus Candida are C. albicans, C. tropicalis, C. stellatoidea, C. glabrata, C. krusez',
C. parapsilosis, C. guillz'ermondz'i, C. viswanathii, and C. lusitaniae. The genus
Cryptococcus specifically includes Cryptococcus neoformans. Yeast can cause infections
of l membranes, for example oral, esophageal, and vaginal infections in humans, as
well as infections of bone, blood, urogenital tract, and central nervous system. This list is
exemplary and is not limiting in any way.
A number of fiangi (apart from yeast) can cause infections in mammalian hosts.
Such infections most commonly occur in immunocompromised hosts, including hosts with
compromised rs to infection (e.g., burn victims) and hosts with compromised immune
systems (e.g., hosts receiving chemotherapy or immune suppressive therapy, and hosts
WO 2013054148
infected with HIV). Pathogenic fungi (apart from yeast) include, without limitation, species
ofAspergillus, ha’zopus, Mucor, Histoplasma, Coccidioides, Blastomyces, phyton,
Mz‘crosporum, and Epidermophyton. Of ular note among the foregoing are A.
fitmz'gatzts, A. flavus, A. niger, H. capsulatzmz, C. z'mmz'zis, and B. demzatz’tidis. Fungi can
cause systemic and deep tissue infections in lung, bone, blood, urogenital tract, and central
nervous system, to name a few. Some fungi are responsible for infections of the skin and
nails.
As used herein, “inhibit” or “inhibiting” means reduce by an objectively
measureable amount or degree compared to l. In one embodiment, inhibit or
inhibiting means reduce by at least a statistically significant amount compared to control.
In one embodiment, inhibit or inhibiting means reduce by at least 5 percent compared to
control. In various individual embodiments, inhibit or inhibiting means reduce by at least
, 15, 20, 25, 30, 33, 40, 50, 60, 67, 70, 75, 80, 90, or 95 percent (%) ed to control.
As used herein, the terms ” and “treating” refer to performing an intervention
that results in (a) preventing a condition or disease from occurring in a subject that
may be
at risk of developing or predisposed to having the condition or disease but has not yet been
diagnosed as having it; (b) inhibiting a condition or disease, e.g., slowing or arresting its
development; or (c) relieving or ameliorating a condition or disease, e. g., causing sion
of the condition or disease. In one embodiment the terms “treating” and “treat” refer to
performing an intervention that results in (a) inhibiting a condition or disease, e.g, slowing
or arresting its development; or (b) ing or rating a condition or disease, e.g.,
causing regression of the ion or disease.
A “fungal infection” as used herein refers to an infection in or of a subject with a
fungus as defined herein. In one embodiment the term “fungal infection” includes a yeast
ion. A “yeast ion” as used herein refers to an infection in or of a t with a
yeast as defined herein.
As used herein, a “subject” refers to a living . In various embodiments a
subject is a non-human mammal, including, without limitation, a mouse, rat, hamster,
guinea pig, rabbit, sheep, goat, cat, dog, pig, horse, cow, or non—human primate. In one
embodiment a t is a human.
As used herein, a ct having a yeast or fungal infection” refers to a subject that
exhibits at least one objective manifestation of a yeast or fungal infection. In one
embodiment a subject having a yeast or fungal infection is a subject that has been
PCT/U52014/059334
diagnosed as having a yeast or fungal infection and is in need of treatment thereof.
Methods of diagnosing a yeast or fungal ion are well known and need not be
described here in any detail.
As used herein, “administering” has its usual meaning and encompasses
stering by any suitable route of administration, including, without limitation,
intravenous, intramuscular, intraperitoneal, intrathecal, intraocular (e.g., intravitreal),
subcutaneous, direct injection (for example, into a tumor), mucosal, inhalation, oral, and
topical.
In one embodiment, the administration is intravenous.
In one embodiment, the administration is oral.
As used herein, the phrase “effective amoun ” refers to any amount that is sufficient
to achieve a desired biological effect.
As used herein, the phrase “therapeutically effective ” refers to an amount
that is sufficient to achieve a desired therapeutic effect, e.g., to treat a yeast or fungal
infection.
Compounds of the invention can be combined with other therapeutic agents. The
compound of the invention and other therapeutic agent may be administered simultaneously
or sequentially. When the other therapeutic agents are administered simultaneously, they
can be stered in the same or separate formulations, but they are administered
substantially at the same time. The other therapeutic agents are administered sequentially
with one another and with nd of the invention, when the stration of the other
therapeutic agents and the compound of the invention is temporally separated. The
separation in time between the administration of these compounds may be a matter of
minutes or it may be longer.
Examples of other therapeutic agents include other antifungal agents, ing
AmB, as well as other antibiotics, anti-viral agents, anti-inflammatory agents,
immunosuppressive agents, and ancer agents.
As stated above, an “effective ” refers to any amount that is ent to
achieve a desired biological effect. Combined with the teachings provided herein, by
choosing among the various active compounds and weighing factors such as y,
relative bioavailability, patient body weight, ty of adverse side-effects and preferred
mode of administration, an effective prophylactic or therapeutic treatment regimen can be
planned which does not cause substantial ed toxicity and yet is effective to treat the
WO 2013054148 PCT/USZO14/059334
particular subject. The effective amount for any particular application can vary depending
on such factors as the disease or condition being treated, the ular compound of the
ion being administered, the size of the subject, or the severity of the disease or
condition. One of ordinary skill in the art can empirically determine the effective amount
of a ular compound of the invention and/or other eutic agent without
necessitating undue experimentation. It is preferred generally that a maximum dose be
used, that is, the highest safe dose according to some medical judgment. Multiple doses per
day may be contemplated to achieve appropriate systemic levels of nds.
Appropriate systemic levels can be determined by, for example, measurement of the
patient’s peak or sustained plasma level of the drug. “Dose” and “dosage” are used
interchangeably herein.
Generally, daily oral doses of active compounds will be, for human subjects, from
about 0.01 milligrams/kg per day to 1000 milligrams/kg per day. It is ed that oral
doses in the range of 0.5 to 50 milligrams/kg, in one or several administrations per day, will
yield the desired results. Dosage may be adjusted appropriately to achieve desired drug
levels, local or systemic, depending upon the mode of administration. For e, it is
expected that intravenous administration would be from one order to several orders of
ude lower dose per day. In the event that the response in a subject is insufficient at
such doses, even higher doses (or effective higher doses by a different, more localized
delivery route) may be employed to the extent that t nce permits. Multiple
doses per day are contemplated to achieve appropriate systemic levels of compounds.
In one embodiment, intravenous stration of a compound of the invention may
typically be from 0.l mg/kg/day to 20 mg/kg/day. enous dosing thus may be similar
to, or advantageously, may exceed maximal tolerated doses ofAmB.
For any compound described herein the therapeutically effective amount can be
initially determined from animal models. A therapeutically effective dose can also be
determined from human data for compounds ofthe invention which have been tested in
humans and for compounds which are known to exhibit similar pharmacological ties,
such as other related active agents. Higher doses may be required for parenteral
administration. The applied dose can be adjusted based on the relative bioavailability and
potency of the administered compound. Adjusting the dose to achieve maximal efficacy
based on the methods described above and other methods as are well-known in the art is
well within the capabilities of the ordinarily skilled artisan.
PCT/U82014/059334
The formulations of the invention are administered in pharmaceutically acceptable
solutions, which may routinely contain pharmaceutically acceptable trations of salt,
buffering agents, preservatives, compatible carriers, adjuvants, and optionally other
eutic ingredients.
Amphotericin B is commercially available in a number of ations, ing
deoxycholate-based formulations and lipid—based (including liposomal) formulations.
Amphoteriein B derivative compounds of the invention similarly may be ated, for
example, and without limitation, as deoxycholate—based ations and lipid—based
ding liposomal) formulations.
For use in y, an effective amount of the compound of the invention can be
administered to a subject by any mode that delivers the compound ofthe invention to the
desired surface. Administering the pharmaceutical composition of the present invention
may be accomplished by any means known to the skilled artisan. Routes of administration
include but are not limited to oral, intravenous, intramuscular, intraperitoneal,
subcutaneous, direct injection (for example, into a tumor or abscess), mucosal, tion,
and topical.
For oral administration, the compounds (i.e., compounds of the invention, and other
therapeutic agents) can be ated readily by combining the active compound(s) with
pharmaceutically acceptable carriers well known in the art. Such carriers enable the
compounds of the invention to be formulated as tablets, pills, dragees, capsules, s,
gels, syrups, slurries, suspensions and the like, for oral ingestion by a subject to be treated.
Pharmaceutical ations for oral use can be obtained as solid exeipient, optionally
grinding a resulting e, and sing the mixture of granules, after adding suitable
auxiliaries, if desired, to obtain tablets or dragee cores. Suitable ents are, in
particular, fillers such as sugars, including lactose, sucrose, mannitol, or sorbitol; cellulose
preparations such as, for example, maize starch, wheat starch, riee starch, potato starch,
gelatin, gum tragacanth, methyl cellulose, hydroxypropylmethyl—eellulose, sodium
carboxymethylcellulose, and/or polyvinylpyrrolidone (PVP). If desired, disintegrating
agents may be added, such as the cross-linked polyvinyl pyrrolidone, agar, or alginic acid
or a salt thereof such as sodium alginate. Optionally the oral formulations may also be
formulated in saline or buffers, e.g., EDTA for neutralizing internal acid conditions or may
be administered without any carriers.
PCT/U82014/059334
Also specifically contemplated are oral dosage forms of the above component or
components. The component or components may be chemically modified so that oral
delivery of the derivative is efficacious. Generally, the chemical modification
contemplated is the attachment of at least one moiety to the component molecule itself,
where said moiety s (a) inhibition of acid ysis; and (b) uptake into the blood
stream from the stomach or intestine. Also desired is the increase in overall ity of the
ent or components and increase in circulation time in the body. Examples of such
moieties include: hylene glycol, copolymers of ethylene glycol and propylene glycol,
carboxymethyl cellulose, dextran, polyvinyl alcohol, polyvinyl pyrrolidone and polyproline.
Abuchowski and Davis, “Soluble Polymer—Enzyme Adducts”, In: Enzymes as Drugs,
Hocenberg and Roberts, eds., Wiley—lnterscienee, New York, N.Y., pp. 367-383 (1981);
Newmark et al., JAppl Biochem 4: 185—9 (1982). Other polymers that could be used are
poly—1,3—dioxolane and poly-1,3,6-tioxocane. Preferred for pharmaceutical usage, as
indicated above, are polyethylene glycol moieties.
For the component (or derivative) the location of release may be the stomach, the
small intestine (the duodenum, the jejunum, or the ileum), or the large intestine. One
skilled in the art has available formulations which will not ve in the stomach, yet will
release the material in the duodenum or elsewhere in the intestine. ably, the release
will avoid the deleterious effects of the stomach environment, either by protection of the
compound of the invention (or derivative) or by release of the biologically active material
beyond the h environment, such as in the intestine.
To ensure full gastric resistance a coating impermeable to at least pH 5.0 is
essential. es ofthe more common inert ingredients that are used as enteric gs
are cellulose acetate litate (CAT), hydroxypropyhnethylcellulose phthalate (HPMCP),
HPMCP 50, HPMCP 55, polyvinyl acetate phthalate , Eudragit L30D, Aquateric,
cellulose acetate phthalate (CAP), Eudragit L, Eudragit S, and shellac. These gs may
be used as mixed films.
A coating or mixture of coatings can also be used on s, which are not intended
for protection against the stomach. This can include sugar coatings, or gs which
make the tablet easier to swallow. Capsules may consist of a hard shell (such as gelatin) for
delivery of dry therapeutic (e.g., powder); for liquid forms, a soft gelatin shell may be used.
The shell material of caehets could be thick starch or other edible paper. For pills,
lozenges, molded tablets or tablet triturates, moist massing techniques can be used.
PCT/U52014/059334
The therapeutic can be included in the formulation as fine multi-particulates in the
form of es or pellets of particle size about 1 mm. The formulation of the al for
capsule administration could also be as a powder, y compressed plugs or even as
tablets. The eutic could be prepared by compression.
nts and flavoring agents may all be included. For example, the compound of
the invention (or derivative) may be formulated (such as by liposome or microsphere
encapsulation) and then further contained within an edible product, such as a refrigerated
beverage containing colorants and flavoring agents.
One may dilute or increase the volume of the therapeutic with an inert material.
These diluents could include carbohydrates, ally mannitol, (it—lactose, anhydrous
lactose, ose, sucrose, modified dextrans and starch. Certain nic salts may be
also be used as fillers including calcium triphosphate, magnesium carbonate and sodium
chloride. Some commercially available diluents are Fast-Flo, Emdex, STA—Rx l500,
Emcompress and Avicell.
Disintegrants may be ed in the formulation of the therapeutic into a solid
dosage form. Materials used as disintegrates include but are not limited to starch, ing
the commercial disintegrant based on starch, Explotab. Sodium starch glycolate,
Amberlite, sodium carboxymethylcellulose, ultramylopectin, sodium alginate, gelatin,
orange peel, acid carboxyrnethyl cellulose, natural sponge and bentonite may all be used.
Another form of the egrants are the insoluble cationic exchange resins. Powdered
gums may be used as disintegrants and as binders and these can include powdered gums
such as agar, Karaya or tragacanth. Alginic acid and its sodium salt are also useful as
disintegrants.
Binders may be used to hold the therapeutic agent together to form a hard tablet and
include materials from natural products such as acacia, tragacanth, starch and gelatin.
Others include methyl cellulose (MC), ethyl cellulose (EC) and carboxymethyl cellulose
(CMC). Polyvinyl pyrrolidone (PVP) and hydroxypropylmethyl cellulose (HPMC) could
both be used in alcoholic solutions to granulate the therapeutic.
An anti-frictional agent may be included in the ation of the therapeutic to
prevent sticking during the formulation process. Lubricants may be used as a layer between
the therapeutic and the die wall, and these can e but are not limited to; stearic acid
including its magncsium and m salts, polytctrafluorocthylcnc (PTFE), liquid paraffin,
vegetable oils and waxes. Soluble lubricants may also be used such as sodium lauryl
PCT/U82014/059334
sulfate, magnesium lauryl sulfate, polyethylene glycol of various molecular weights,
ax 4000 and 6000.
Glidants that might improve the flow properties of the drug during formulation and
to aid rearrangement during ssion might be added. The glidants may include starch,
talc, pyrogenic silica and hydrated silicoaluminate.
To aid dissolution of the therapeutic into the aqueous environment a surfactant
might be added as a wetting agent. Surfactants may include anionic detergents such as
sodium lauryl sulfate, dioctyl sodium sulfosuccinate and dioctyl sodium sulfonate. Cationic
detergents which can be used and can include benzalkonium chloride and benzethonium
chloride. Potential non~ionie detergents that could be ed in the formulation as
surfactants e laurornacrogol 400, yl 40 stearate, polyoxyethylene hydrogenated
castor oil 10, 50 and 60, glycerol monostearate, polysorbate 40, 60, 65 and 80, sucrose fatty
acid ester, methyl cellulose and carboxymethyl cellulose. These surfactants could be
present in the formulation of the compound of the invention or derivative either alone or as
a mixture in different .
Pharmaceutical preparations which can be used orally include push—fit capsules
made of gelatin, as well as soft, sealed capsules made of gelatin and a plasticizer, such as
glycerol or sorbitol. The push-fit capsules can contain the active ingredients in admixture
with filler such as lactose, s such as starches, and/or lubricants such as talc or
magnesium stearate and, optionally, stabilizers. In soft capsules, the active compounds may
be ved or suspended in le s, such as fatty oils, liquid paraffin, or liquid
polyethylene glycols. In addition, stabilizers may be added. Microspheres ated for
oral administration may also be used. Such mierospheres have been well defined in the art.
All formulations for oral administration should be in dosages le for such
administration.
For buccal stration, the compositions may take the form of tablets or
lozenges formulated in conventional manner.
For administration by inhalation, the compounds for use ing to the present
invention may be conveniently delivered in the form of an aerosol spray presentation from
pressurized packs or a nebulizer, with the use of a suitable lant, e.g.,
dichlorodifluoromethane, trichlorofluoromethane, diehlorotetrafluoroethane, carbon dioxide
or other suitable gas. In the case of a pressurized aerosol the dosage unit may be
determined by providing a valve to deliver a metered amount. Capsules and cartridges of
e.g., n for use in an inhaler or insufflator may be formulated containing a powder mix
of the compound and a suitable powder base such as lactose or starch.
Also contemplated herein is pulmonary delivery of the compounds of the invention
(or derivatives f). The compound of the invention (or derivative) is delivered to the
lungs of a mammal while inhaling and traverses across the lung epithelial lining to the
blood . Other reports of inhaled molecules include Adjei et al., Pharm Res 7:565-
569 (1990); Adj ei et al., IntJ Pharmaceutics 63:135-144 (1990) (leuprolide acetate);
Braquet et al., J Cardiovasc Pharmacol 13(suppl. 5): 143—146 (1989) (endothelin—l);
Hubbard et al., Annal Int Med 3 :206—212 (1989) ntitrypsin); Smith et al., 1989, J Clin
Invest 84: 1 145-1 146 (a-l-proteinase); Oswein et al., 1990, ”Aerosolization of Proteins",
Proceedings of ium on Respiratory Drug Delivery 11, Keystone, Colorado, March,
(recombinant human growth hormone); Debs et al., 1988, J Immunol 140:3482-3488
(interferon—gamma and tumor necrosis factor alpha) and Platz et al., US. Pat. No.
,284,656 (granulocyte colony stimulating factor). A method and composition for
pulmonary delivery of drugs for systemic effect is described in US. Pat. No. 5,451,569,
issued Sep. 19, 1995 to Wong et al.
Contemplated for use in the practice of this invention are a wide range of
mechanical devices designed for pulmonary delivery of therapeutic products, including but
not limited to nebulizers, d dose inhalers, and powder rs, all ofwhich are
familiar to those skilled in the art.
Some specific examples of commercially available s suitable for the ce
of this invention are the Ultravent nebulizer, manufactured by Mallinekrodt, Inc., St. Louis,
Mo.; the Acorn 11 nebulizer, manufactured by st l ts, Englewood,
Colo; the Ventolin metered dose inhaler, manufactured by Glaxo 1nc., Research Triangle
Park, North Carolina; and the Spinhaler powder inhaler, manufactured by Fisons Corp,
Bedford, Mass.
All such devices require the use of formulations suitable for the dispensing of
compound ofthe invention (or derivative). Typically, each ation is specific to the
type of device employed and may involve the use of an appropriate propellant material, in
addition to the usual diluents, adjuvants and/or carriers useful in therapy. Also, the use of
liposomes, microcapsules or microspheres, inclusion complexes, or other types of carriers is
contemplated. Chemically modified compound ofthe invention may also be prepared in
PCT/U82014/059334
different ations depending on the type of chemical modification or the type of device
employed.
Formulations suitable for use with a nebulizer, either jet or ultrasonic, will typically
comprise compound of the invention (or derivative) ved in water at a concentration of
about 0.1 to 25 mg of biologically active compound of the invention per mL of solution.
The formulation may also e a buffer and a simple sugar (e.g., for compound of the
invention ization and regulation of osmotic pressure). The nebulizer formulation may
also contain a surfactant, to reduce or prevent surface induced aggregation of the compound
of the invention caused by atomization of the solution in forming the aerosol.
Formulations for use with a metered-dose inhaler device will generally se a
finely divided powder containing the compound of the invention (or derivative) suspended
in a propellant with the aid of a surfactant. The propellant may be any conventional
al employed for this purpose, such as a chlorofluorocarbon, a
hlorofluorocarbon, a hydrofluorocarbon, or a hydrocarbon, including
trichlorofluoromethane, dichlorodifluoromethane, dichlorotetrafluoroethanol, and 1,1,1,2-
tetrafluoroethane, or combinations thereof. Suitable surfactants include sorbitan ate
and soya lecithin. Oleic acid may also be useful as a surfactant.
Formulations for dispensing from a powder inhaler device will comprise a finely
divided dry powder containing compound of the invention (or derivative) and may also
include a bulking agent, such as lactose, sorbitol, e, or mannitol in s which
facilitate dispersal of the powder from the , e. g., 50 to 90% by weight of the
formulation. The compound ofthe invention (or derivative) should advantageously be
prepared in particulatc form with an c lc sizc of less than 10 micromctcrs (um),
most preferably 0.5 to 5 pm, for most effective delivery to the deep lung.
Nasal delivery of a pharmaceutical composition of the present invention is also
contemplated. Nasal delivery allows the passage of a ceutical composition of the
present invention to the blood stream directly after administering the therapeutic product to
the nose, without the necessity for deposition of the product in the lung. Formulations for
nasal delivery include those with dextran or cyclodextran.
For nasal administration, a useful device is a small, hard bottle to which a metered
dose sprayer is attached. In one embodiment, the metered dose is delivered by drawing the
pharmaceutical composition ofthe present invention solution into a chamber of defined
volume, which chamber has an aperture dimensioned to aerosolize and l formulation
by forming a spray when a liquid in the chamber is compressed. The chamber is
compressed to administer the pharmaceutical composition of the present invention. In a
specific embodiment, the chamber is a piston arrangement. Such devices are commercially
available.
Alternatively, a plastic squeeze bottle with an aperture or opening ioned to
lize an aerosol formulation by forming a spray when squeezed is used. The opening
is usually found in the top of the , and the top is generally tapered to partially fit in the
nasal passages for efficient administration of the aerosol formulation. Preferably, the nasal
inhaler will provide a d amount of the aerosol formulation, for administration of a
measured dose of the drug.
The compounds, when it is desirable to deliver them systemically, may be
formulated for parenteral administration by injection, e. g., by bolus injection or continuous
infusion. ations for injection may be presented in unit dosage form, eg, in
ampoules or in multi-dose containers, with an added preservative. The itions may
take such forms as sions, ons, or ons in oily or aqueous vehicles, and
may contain formulatory agents such as suspending, stabilizing and/or dispersing agents.
Pharmaceutical formulations for parenteral administration include aqueous solutions
of the active compounds in water-soluble form. Additionally, sions of the active
compounds may be prepared as appropriate oily injection suspensions. Suitable lipophilic
solvents or vehicles include fatty oils such as sesame oil, or synthetic fatty acid , such
as ethyl oleate or triglycerides, or liposomes. Aqueous injection suspensions may contain
substances which increase the viscosity of the suspension, such as sodium
earboxymethylcellulose, sorbitol, or n. Optionally, the suspension may also n
suitable stabilizers or agents which increase the solubility of the compounds to allow for the
preparation of highly concentrated solutions.
Alternatively, the active compounds may be in powder form for constitution with a
suitable vehicle, e. g., sterile n—free water, before use.
The compounds may also be formulated in rectal or vaginal compositions such as
suppositories or retention enemas, e.g., containing conventional suppository bases such as
cocoa butter or other glycerides.
In addition to the formulations described above, the compounds may also be
formulated as a depot preparation. Such long acting formulations may be formulated with
suitable polymeric or hydrophobic materials (for example as an emulsion in an acceptable
W0 20152054148 PCT/U82014/059334
oil) or ion exchange resins, or as sparingly soluble derivatives, for example, as a sparingly
soluble salt.
The pharmaceutical compositions also may comprise suitable solid or gel phase
carriers or excipients. Examples of such carriers or excipients include but are not limited to
calcium carbonate, calcium phosphate, various , starches, cellulose derivatives,
gelatin, and polymers such as polyethylene glycols.
Suitable liquid or solid pharmaceutical preparation forms are, for example, aqueous
or saline solutions for inhalation, microeneapsulated, eneochleated, coated onto
microscopic gold les, contained in mes, nebulized, aerosols, pellets for
implantation into the skin, or dried onto a sharp obj ect to be scratched into the skin. The
pharmaceutical compositions also include granules, powders, tablets, coated tablets,
(micro)capsules, suppositories, syrups, emulsions, suspensions, creams, drops or
preparations with protracted release of active compounds, in whose preparation excipients
and additives and/0r auxiliaries such as disintegrants, binders, coating agents, ng
agents, lubricants, flavorings, ners or solubilizers are customarily used as described
above. The pharmaceutical compositions are suitable for use in a variety of drug delivery
systems. For a brief review of methods for drug delivery, see Langer R, Science 249: 1527—
33 (1990), which is incorporated herein by nce.
The compounds of the invention and optionally other eutics may be
administered per se (neat) or in the form of a pharmaceutically acceptable salt. When used
in medicine the salts should be pharmaceutically acceptable, but non—pharmaceutically
acceptable salts may conveniently be used to prepare pharmaceutically acceptable salts
thereof. Such salts include, but are not limited to, those prepared from the ing acids:
hydrochloric, romic, sulphuric, nitric, phosphoric, maleic, acetic, salicylic, ene
sulphonic, tartaric, citric, methane sulphonic, formic, malonic, ic, naphthalene-2—
nic, and benzene sulphonic. Also, such salts can be prepared as alkaline metal or
alkaline earth salts, such as sodium, potassium or calcium salts of the carboxylic acid
group.
Suitable ing agents include: acetic acid and a salt (1-2% w/v); citric acid and a
salt (1-3% w/v); boric acid and a salt (05-25% w/v); and phosphoric acid and a salt (0.8-
2% w/v). Suitable preservatives include benzalkonium chloride (0.003-0.03% w/v);
butanol (OS-0.9% w/v); parabens (0.01-0.25% w/v) and osal (0.004-0.02%
w/v).
PCT/U82014/059334
ceutical compositions of the invention contain an effective amount of a
compound of the invention and ally therapeutic agents included in a pharmaceutically
acceptable carrier. The term “pharmaceutically acceptable r” means one or more
compatible solid or liquid filler, diluents or encapsulating substances which are suitable for
administration to a human or other vertebrate animal. The term “carrier” denotes an
organic or inorganic ingredient, natural or synthetic, with which the active ingredient is
combined to facilitate the application. The components of the pharmaceutical compositions
also are capable of being gled with the compounds of the present invention, and
with each other, in a manner such that there is no interaction which would substantially
impair the desired pharmaceutical efficiency.
The therapeutic agent(s), including specifically but not limited to the compound of
the invention, may be provided in particles. Particles as used herein means nanoparticles or
mieropartieles (or in some instances larger particles) which can consist in whole or in part
of the compound of the invention or the other therapeutic agent(s) as described herein. The
I5 particles may n the therapeutic agent(s) in a core surrounded by a coating, including,
but not limited to, an enterie coating. The therapeutic agent(s) also may be dispersed
throughout the particles. The therapeutic s) also may be adsorbed into the particles.
The particles may be of any order release kinetics, including zero—order release, first-order
release, second—order release, delayed release, sustained release, immediate release, and any
combination thereof, etc. The le may include, in addition to the therapeutic agent(s),
any ofthose als routinely used in the art ofpharmacy and medicine, ing, but
nmHmfiahmemfiManmmmmMabmmgmmmkgwmmMmhgmmwemammhn
combinations thereof. The particles may be mierocapsules which contain the compound of
the invention in a solution or in a semi—solid state. The particles may be of virtually any
shape.
Both non-biodegradable and biodegradable polymeric materials can be used in the
cture ofparticles for delivering the therapeutic agent(s). Such polymers may be
natural or synthetic polymers. The polymer is selected based on the period oftime over
which release is desired. Bioadhesive polymers of particular interest include bioerodible
hydrogels described in Sawhney H S et al. (1993) olecules 26:581—7, the ngs
of which are incorporated herein. These include polyhyaluronic acids, casein, n,
, polyanhydrides, rylic acid, alginate, chitosan, poly(methyl methacryiates),
poly(ethyl rylates), poly(butylmethacrylate), poly(isobutyl methacrylate),
poly(hexylmethacry1ate), poly(isodecyl methacrylate), poly(1aurylmethacrylate),
poly(phenyl methacrylate), poly(methyl acrylate), poly(isopropy1 acrylate), poly(isobutyl
acrylate), and poly(octadecyl te).
The therapeutic agent(s) may be contained in controlled release systems. The term
“controlled release” is intended to refer to any drug-containing formulation in which the
manner and profile of drug release from the formulation are controlled. This refers to
immediate as well as non—immediate e formulations, with non-immediate release
formulations including but not limited to sustained e and delayed release
formulations. The term “sustained release” (also referred to as “extended release”) is used
in its conventional sense to refer to a drug formulation that provides for gradual release of a
drug over an extended period of time, and that ably, although not arily, results
in substantially constant blood levels of a drug over an extended time period. The term
“delayed release” is used in its conventional sense to refer to a drug formulation in which
there is a time delay between administration of the formulation and the release of the drug
there from. “Delayed releaSe” may or may not involve l release of drug over an
extended period of time, and thus may or may not be ined release.”
Use of a long-term sustained release implant may be particularly suitable for
treatment of chronic conditions. “Long—term” release, as used , means that the
implant is constructed and ed to deliver eutic levels of the active ingredient for
at least 7 days, and preferably 30—60 days. Long—term sustained release implants are well-
known to those of ordinary skill in the art and include some of the release s
described above.
It will be understood by one of ordinary skill in the relevant arts that other suitable
modifications and adaptations to the compositions and methods described herein are readily
apparent from the description of the invention ned herein in View of information
known to thc ordinarily skilled n, and may be made without departing from the scopc
of the invention or any embodiment thereof. Having now described the present ion in
detail, the same will be more clearly understood by reference to the following examples,
which are included herewith for purposes of illustration only and are not intended to be
limiting of the invention.
W0 20151054148
EXAMPLES
Example 1. C5—de0xy AmB
Degradative Synthesis
See Scheme 6, Figure 19.
One potential tic strategy to gain access to CS-deoxyAmB AmB) is a
ative sis starting with the natural product AmB. Using fully protected
intermediate 5 as a starting point, upon elimination of the C3 alcohol, alpha-beta
unsaturated ester 9 is generated. A nucleophilic oxidation of the beta- carbon would re-
install the necessary hydroxyl group at C-3, g the C-5 alcohol of as the only
unprotected alcohol on the AmB framework. From here a Barton-McCombie type
deoxygenation could remove the C-5 alcohol. Then a short deprotection sequence could
afford CSdeOAmB.
Specifically we anticipate using intermediate 3, an intermediate ible using a
ce similar to that utilized in the sis of C3-deoxyAmB. Exposure of 5 to
NaHMDS cleanly eliminates the C-3 alcohol in 54% yield. A nucleophilic addition using
BzPinz zed by a copper catalyst could selectively borylate at the beta position.
Subsequent oxidation with sodium perborate, followed by TBS silylation could potentially
re-install the oxidation at O3 in a protected form. Then, thiocarbonyl formation using
rbonyldiimidazole followed by a radical deoxygenation with tributyltin hydride and
Azobisisobutyronitrile could generate C-S deoxygenated AmB framework 1]. A
ection sequence involving HF-pyridine removal of silyl groups, followed by ketal
hydrolysis with CSA in THFzHgO 2:1, and lastly concomitant removal ofboth the allyl
ester and alloc carbamate could quickly generate CSdeOAmB.
Example 2. CS-deoxy AmB
Total Synthesis of Doubly 13C Labeled AmB Macrolactone
See Schemes 7-12, Figures 20-25.
A total synthesis strategy relying on the efficient and flexible iterative Suzuki-
Miyaura cross coupling (ICC) platform is envisioned. The ICC strategy takes advantage of
bifunctional B-protected haloboronic acids which can be exposed to a suitable boronic acid
partner and selectively react under Suzuki—Miyaura cross coupling conditions at only the
halide terminus. Deprotection of the MIDA ligand using basic ysis to a free boronic
acid readies the building block for the next cycle of cross coupling. As shown in Figure
3A, AmB is retrosynthetically divided into four building blocks (BBl-BB4). Using only the
Suzuki—Miyaura cross coupling in an iterative fashion we aim to form bonds n
building blocks 1 and 2, 2 and 3, and 3 and 4. Subsequent macrolactonization and global
deprotection would then complete the total synthesis. Using this strategy, synthesis of a
deoxygenated derivative only requires the synthesis of a new deoxygenated building block,
leaving the remainder of the synthesis unchanged. For instance, synthesis of CS-deoxy
AmB could be achieved by simply substituting BB1 with OS deoxy BB1.
The synthesis of 881 arising from the coupling of two r nts, aldehyde
14, and beta-keto phosphonate 17. The synthesis of aldehyde 14 ces with
combination of Chan’s diene 12 and aldehyde 13 in the presence of a
Titanium/BINOL complex affects an enantioselective extended aldol reaction. Then, a
sequence ofsyn reduction, ketalization and ozonolysis generates desired aldehyde 14 with
an overall yield of40% from 12. The sis of the right half of CSdeOAmB begins with
the selective esterification of (R)-malic acid followed by ketalization to provide
cyclopentylidene ketal 15. Exposure of 15, to Petasis’ reagent followed by ketone formation
upon exposure to lithiated yl methyl phosphonate 16 affords beta—keto phosphonate
Upon generation ofboth the left and right halves of B81, a Wadsworth-
Emmons ng joins fragments 14 and 17. Subsequent Stryker reduction then generates
ketone 18. A diastereoselective ketone reduction resulting from exposure of 18 to L—
selectride, ed by acylation. of the resulting alcohol, and a final hydroboration of the
methylene dioxane readies CSdeOAmB for —Miyaura cross coupling with BB2.
Similar to BB], BB2 is also divided into two smaller fragmcnts. Sugar donor 24,
and glycosyl acceptor 33 will be joined in a diastereoselective glycosylation reaction. First,
the two smaller fragments must be synthesized. The synthesis of 24 starts with 2-fiiryl
methyl ketone. Reduction of the ketone ed by an Achmatowitcz reaction promoted
by NBS and subsequent Boc protection generates dihydropyran 20. Next, exchange of the
Boo acetal for a ethoxybenzyl acetal followed by ketone reduction under Luche
conditions provides access to allylic alcohol 21. The allylic alcohol is then used to control
the facial ivity of a mCPBA epoxidation before it is silylated with TBSCl and
WO 2015054148 PCT/U82014/059334
imidazole. Site selective opening of the epoxide is then achieved by opening with a
deithylalumminumazide complex to yield azido-alcohol 22. Next, the free alcohol is
esterified with EDC, DMAP, and TDMBA. Lastly, reduction of the PMB alcohol is
achieved upon exposure to DDQ and subsequent trichloroacetimidate formation realizes the
synthesis of fully protected C2’—epimycosamine sugar donor 24, ready for ylation
with allylic alcohol 33.
Starting from L-(—)-arabitol, bis ketalization followed by l oxidation with
IBX, and Wittig olefination provides l,l—disubstituted olefin 25. Hydroboration of 25,
followed by benzylation, and acid cleavage of both ethyl ketals generates an intermediate
capable cyclization to afford bis—epoxide 26. Opening of bis—epoxide 26 with TMSCN and
KCN in the presence of lS-crown—é generates a bis—cyano diol, which upon hydrolysis to a
bis—carboxylic acid undergoes an intramolecular diastereotopic group selective lactonization
to provide lactone 27. Simple methyl esterification and TBS tion then provide lactone
28. Debenzylation, upon exposure of 28 to palladium on carbon and en, followed by
Pinnick oxidation, and then Mitsunobu reaction with TMS—ethanol provides a entially
substituted di~ester capable of selective saponification with sodium hydroxide to provide
acid 29. Acid chloride ion of 29 with oxalyl chloride followed by Stille coupling
with bis—metalated olefin 31 provides alpha-beta unsaturated ketone 32. Diastereoselective
reduction of ketone 32 to allylic alcohol 33 is achieved with a CBS reduction ready for
glycosylation with 24.
Taking advantage of the anchimeric assistance rm for controlled beta—
glycosylation, combination of 24 and 33 in the presence of buffered chloro-methyl
pyridinium triflate provides 34 with greater than 20:1 beta to alpha selectivity. The TDMB
ing group is then removed upon exposure to CSA in hexafluoroisopropanol, tert-
butanol, and methylene chloride ing free l 35. A three-step sequence of
ion, reduction of the resulting kctonc and silylation accesses TBS cthcr 36. lodo—
degermylation followed exposure to diphenyl phosphoryl chloride and LiHMDS grants
access to ketene acetal phosphonate 38. A selective Stille coupling to tributyl stannane 39
achieves the synthesis of BB2.
Iodo-triene BB3 is the least complex of the four building blocks. lts sis is
achieved in four steps, starting vinyl iodide MlDA boronate 40. A Stille coupling with
31 using Pd(PPh3)4 and CUTC, ed by iodo-degermylation provides diene 41. The
olefin network is then extended by another vinyl group with a second Stille coupling with
W0 2015(054148
‘31, and uent iodo—degermylation to access BB3. The synthesis ofBB4 is achieved
rapidly following literature precedent from our group. Lee, SJ et al., JAm Chem Soc
130:466 (2008); Paterson, I et al., JAm Chem Soc 35 (2001).
With all four building blocks in hand, they can now be led using the ive
cross coupling platform to rapidly generate the AmB macrolactone. Combination of BB]
and BB2 with Buchwald’s 2nd tion SPhos palladacycle, potassium ate, and 3
equivalents ofwater effects a Suzuki-Miyaura cross coupling to form 2 dimer 43.
l exchange of the MIDA boronate, followed by a second Suzuki coupling with BBB,
this time with the XPhos—Generation 2 palladacycle forms pentaene 44. An in—situ release
of the MIDA boronate to a free boronie acid with sodium hydroxide in the presence of the
palladium 2nd generation XPhos palladacycle forms the all carbon linear framework of
AmB, 45. After saponification of methyl ester 45 with lithium hydroxide, a
macrolactonization then affords the double 13C d macrolactone ofAmB, 46. A series
of protecting group removals including TMSE deprotection with TBAF-tBuOH complex,
global lation with HF-pyridine, deketalization with trifluoroacetie acid, and
Staudinger reduction of the C3’ azide with trimethylphosphine should achieve the synthesis
of AmB-”Cg.
Example 3. CS-deoxy AmB
Total Synthesis of CSdeOAmB
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Scheme 13
An alternative synthetic strategy to access C5-deoxy AmB is through a total
synthesis effort. We envision the synthesis of C5deOBBl arising from the ng of two
smaller fragments, aldehyde 47, and beta—keto phosphonate 17. The synthesis of aldehyde
PCT/U82014/059334
47 commences with beta—keto ester 48, available after alkylation of methyl acetoacetate.
Noyori hydrogenation of 48, followed by TBS silylation provides silyl ether 49. From 49,
only an ozonolysis remains to finish the left half of CSdeOAmB.
Upon generation of both the left and right halves of CSdeOAmB we anticipate a
Homer-WadSWOIth-Emmons coupling to join fragments 47 and 17. Subsequent Stryker
reduction would then generate ketone 50. A diastereoselective ketone reduction resulting
from exposure of 50 to L—selectride, followed by acylation of the resulting alcohol, and a
final hydroboration readies Bl for Suzuki-Miyaura cross coupling with BB2.
See Scheme 14, Figure 26.
With all four building blocks in hand, they can now be assembled using the iterative
cross coupling platform to y generate with the mB macrolactone. We
anticipate combination of C5deOBB1 and BB2 with Buchwald’s 2nd generation SPhos
palladacycle, potassium phosphate, and 3 equivalents of water will effect a Suzuki-Miyaura
cross coupling to form C5deOBBl—BB2 dimer 51. Pinacol exchange ofthe MIDA
te, followed by a second Suzuki coupling with BB3, this time with the XPhos—
Generation 2 acycle will form pentaene 52. An in. situ release of the MIDA boronate
to a free boronic acid with sodium hydroxide in the presence of the palladium 2nd
generation XPhos palladacycle will form the all carbon linear framework of mB
53. After saponification of methyl ester 53 with lithium hydroxide, a actonization
should then afford macrolactone 54. A series of protecting group ls including TMSE
deprotection with TBAF-tBuOI—l complex, global desilylation with HF—pyridine,
lization with trifluoroacetic acid, and nger reduction of the C3 ’ azide with
trimethylphosphine should achieve the synthesis of CSdeOAmB.
Example 4. C8-deoxy AmB
Total Synthesis of C8deOAmB
See Scheme 15, Figure 27.
Similar to the strategy to access AmB, we on the synthesis of C8-deoxy AmB
arising fi'om a total synthesis effort, To achieve this synthesis, the only change to the AmB
synthesis that would need to be made is replacing C5deOBBl with C8deOBBl. We
envision the synthesis of C8deOBB1 arising from the reduction of alpha—beta unsaturated
-46—
PCT/USZOI4/059334
ketone 55, which would be accessed from a Homer-Wadsworth—Emmons coupling of
aldehyde 47 and beta-keto phosphonate 17.
An HWE olefination between 47 and 17, followed by Stryker reduction of the
resulting alpha-beta unsaturated carbonyl es ketone 56. We then pate reducing
the ketone to an l with sodium borohydride and activating the alcohol for removal as
thioester 57. Radical mediated removal of the C8-thioester is then achieved upon exposure
to tributyltin hydride and AIBN. A hydroboration of the methylene dioxane with 9BBNH
then readies C8deOAmB for entrance into the ICC sequence.
See Scheme 16, Figure 28.
With all four building blocks in hand, they can now be assembled using the iterative
cross coupling platform to rapidly generate with C8deOAmB macrolactone. We anticipate
combination ofC8deOBBl and BB2 with ld’s 2nd generation SPhos acycle,
potassium phosphate, and 3 equivalents of water will effect a Suzuki-Miyaura cross
coupling to form BB1-BB2 dimer 58. Pinacol exchange of the MIDA boronate, ed by
a second Suzuki coupling with BB3, this time with the XPhos-Generation 2 palladacycle
will form pentaene 59. An in-situ release of the MIDA boronate to a free boronic acid with
sodium hydroxide in the presence of the palladium 2nd generation XPhos acycle will
form the all carbon linear framework of C8deOAmB 56. After saponification ofmethyl
ester 60 with lithium hydroxide, a macrolactonization should then afford macrolactone 61.
A series of protecting group removals including TMSE deprotection with TBAF—tBuOH
complex, global desilylation with HF~pyridine, deketalization with trifluoroacetic acid, and
Staudinger reduction of the C3’ azide with hylphosphine should achieve the sis
of C8deOAmB.
Example 5. C9-deoxy AmB
Total Synthesis of mB
See Scheme 17, Figure 29.
Similar to the strategy to access AmB, we envision the synthesis of C9-deoxy AmB
arising from a total synthesis effort. To achieve this synthesis, the only change to the AmB
synthetic strategy that would need to be made is replacing BB1 with C9deOBB 1. We
foresee the sis of C9deOBBl g from a Homer-Wadsworth-Emmons coupling of
2014/059334
aldehyde 14 and eto phosphonate 62. The C—ll stereocenter cannot be installed Via a
diastereoselective hydroboration, ore to overcome this limitation, 9-deoxy BB1 was
assembled stereoselectively in a linear fashion starting with a MIDA boronate. This route
takes advantage of the ability of MIDA boronates to withstand a y of common
synthetic transformations.
Starting with allyl MIDA boronate 63, a short sequence of ozonolysis, Brown
allylation, TBS protection, and hydroboration/oxidation results in aldehyde 64. During this
initial sequence it was discovered that a bleach, instead of the typical hydrogen
peroxide/sodium ide, oxidatuve workup of the initial brown allylation product
efficiently oxidizes the carbon—boron bond without decomposition of the MIDA boronate.
Exposure of 64 to lithiated dimethyl methyl phosphonate followed by Bess-Martin
oxidation yields B—keto phosphonate 65. Demonstrating the convergent nature of the BB]
tic strategy, combination of 14 with 62 in a Horner-Wadsworth-Emmons coupling
affords 0H3 unsaturated ester 66. Reduction of the carbonyl with the S catalyst,
followed by catalytic hydrogenation yields 67. This C~9 deoxy BB1 intermediate contains
the entire carbon framework in the correct ion state with all of the stereochemistry
preinstalled. Only 3. TBS protection is required to realize a C-9 deoxy BB1 analog ready for
MIDA boronate deprotection and coupling with BB2.
See Scheme 18, Figure 30.
With all four building blocks in hand, they can now be assembled using the iterative
cross ng platform to rapidly generate with C9deOAmB macrolactone. We anticipate
combination of C9deOAmB, after MIDA boronate hydrolysis with NaOH, and BB2 with
Buchwald’s 2nd generation SPhos acycle, potassium phosphate, and 3 equivalents of
water will effect a Suzuki-Miyaura cross coupling to form 2 dimer 68. Pinacol
exchange ofthe MIDA boronate, followed by a second Suzuki coupling with BB3, this time
with the XPhos-Generation 2 palladacycle will form pentaene 69. An in—situ release of the
MIDA boronate to a free boronic acid with sodium hydroxide in the presence of the
ium 2nd generation XPhos palladacycle will form the all carbon linear framework of
C9deOAmB 70. After saponifieation of methyl ester 70 with lithium hydroxide, a
actonization should then afford macrolaetone 7]. A series of protecting group
removals including TMSE deprotection with TBAF-tBuOH complex, global desilylation
-48~
with HF-pyridine, deketalization with trifluoroacetie acid, and Staudinger reduction of the
C3’ azide with trimethylphosphine should achieve the synthesis of C9deOAmB.
e 6. oxy AmB
Total sis of ClldeOAmB
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Scheme 19
Similar to the strategy to access AmB, we envision the synthesis of C8-deoxy ArnB
arising from a total synthesis effort. To achieve this synthesis, the only change to the AmB
sis that would need to be made is replacing BB1 with Cl ldeOBBl. We envision the
synthesis of C1 ldeOBBl arising from a Homer-Wadsworth-Emmons coupling of aldehyde
14 and beta—keto phosphonate 72.
We envision the synthesis of Cl ldeOBBl starting with the TBS silylation of alpha—
hydroxy ester 73. Addition of lithiated dimethyl methyl phosphonate 17 into this ester
should provide beta—keto phosphonate 72. Under Homer-Wadsworth~Emmons coupling
conditions, 72 should react with aldehyde 14. uent reduction of the generated alpha—
beta unsaturated carbonyl with Stryker’s reagent should provide ketone 75. A
diastereoselective ketone ion resulting from exposure of 75 to L-Selectride, followed
by acylation of the resulting alcohol, and hydroboration ofthe methylene dioxane readies
C1 B for Suzuki-Miyaura cross coupling with BB2.
See Scheme 20, Figure 31.
With all four ng blocks in hand, they can now be assembled using the iterative
eross coupling platform to rapidly generate with C1 ldeOAmB maerolactonc. We
anticipate combination of Cl ldeOBBl and BB2 With Buchwald’s 2nd generation SPhos
W0 2015(054148 PCT/U52014/059334
palladacycle, potassium phosphate, and 3 equivalents of water will effect a Suzuki—‘vliyaura
cross coupling to form BB1-BB2 dimer 76. Pinacol exchange of the MIDA boronate,
followed by a second Suzuki coupling with BB3, this time with the XPhos-Generation 2
palladacycle will form pentaene 77. An in-situ release of the MIDA boronate to a free
boronic acid with sodium hydroxide in the presence of the palladium 2nd tion XPhos
palladacycle will form the all carbon linear framework of C1 B 78. After
saponification of methyl ester 78 with m hydroxide, a macrolactonization should then
afford macrolactone 79. A series of protecting group ls including TMSE
deprotection with TBAF-tBuOH complex, global desilylation with HF-pyridine,
deketalization with trifluoroacetic acid, and Staudinger reduction of the C3 ’ azide with
trimethylphosphine should achieve the synthesis of C1 ldeOAmB.
Example 7. C13-deoxy AmB
Total Synthesis of Cl3deOAmB
See Scheme 21, Figure 32.
One approach to the sis of C13deOAmB is presented in Figure 11. Upon
generating a suitably protected intermediate the C—13 alcohol can be activated for ion
either through conversation to r ketal, thioketal, or elimination to a -14
dihydropyran. Upon activation of the C-13 alcohol, it could then be reduced to a simple
hydrogen atom. Then a series of protecting group ls would complete the synthesis of
Cl 3deOAmB.
The synthesis of Cl3deOAmB commences with Fmoc protection of the
mycosamine nitrogen, persilylation of all alcohols except the C13 ketal as TES silyl ethers,
and finally a Misunobu lation of the TMSE ester to provide fully protected
intermediate 80. Then, the C-13 position is easily converted with ethane thiol and acid to
ethyl thioketal 81. Oxidation of 81 with mCPBA provides a sulfoxide which could be
removed under reductive conditions with triethylsilane in DCM. With 82 in hand, a series
of protecting group removals including TMSE removal with tetrabutylammonium fluoride,
global TES desilylation with HF—pyridine complex, and a final Fmoc deprotection with
piperidine could grant access to Cl 3deOAmB.
W0 201521154148
Example 8. C15~deoxy AmB
Total sis of ClSdeOAmB
See Scheme 22, Figure 33.
r to the strategy to access AmB, we on the synthesis of oxy
AmB arising from a total synthesis effort. To achieve this synthesis, the only change to the
AmB synthetic strategy that would need to be made is replacing BBZ with C15deOAmB.
We foresee the synthesis of ClSdeOBBl arising from the glycosylation of allylic alcohol
83, g the C15 alcohol, with a mycosamine sugar donor 24.
The sis of allylic alcohol 83 begins L-(-)-arabitol and proceeds through the
same synthetic sequence as 882 all the way through the diastereotopic group selective
lactonization generating lactone 86. From this branching point, methyl esterification,
followed by activating the C 15~alcohol for removal as the thioearbonyl, and resulting
Barton—McCombie type enation promoted by tributyltin hydride and AIBN should
I5 provide enated lactone 87.
With lactone 87 in hand, debenzylation, upon exposure of 87 to palladium on
carbon and hydrogen, followed by Pinnick oxidation, and then obu reaction with
TMS-ethanol should provide a differentially substituted di—ester capable of selective
saponification with sodium hydroxide to provide acid 88. Acid chloride formation of 88
with oxalyl chloride followed by Stille coupling with bismetalated olefin should provide
alpha-beta unsaturated ketone 90. Diastereoselective reduction of ketone 90 to allylic
alcohol 83 could be achieved with a CBS reduction ready for glycosylation with 24.
_ Taking advantage ofthe anehimeric ance platform for controlled beta—glycosylation,
combination of 83 and 24 in the presence ofbuffered chloro-methyl pyridinium triflate
should provide 91 with excellent beta selectivity. The TDMB directing group could then be
removed upon re to CSA in hexafluoroisopropanol, tert—butanol, and methylene
chloride revealing free alcohol 92. A three step sequence of oxidation, reduction of the
ing ketone and silylation should access TBS ether 93. Iodo-degermylation followed
exposure to diphenyl phosphoryl chloride and LiHMDS could access to ketene aeetal
phosphonate 95. A selective Stille ng to a tributyl stannane should achieve the
synthesis of Cl SdeOBBZ.
W0 2015(054148 2014/059334
See Scheme 23, Figure 34; and Scheme 24, Figure 35.
With all four building blocks in hand, they can now be assembled using the iterative
cross coupling platform to y generate with C15deOAmB macrolactone. We
anticipate combination of B31 and ClSdeOBBZ with ld’s 2nd generation SPhos
acylce, potassium phosphate, and 3 equivalents of water will effect a Suzuki—Viiyaura
cross coupling to form BBl-BB2 dimer 96. Pinacol exchange of the MIDA boronate,
followed by a second Suzuki coupling with BBB, this time with the XPhos-Generation 2
palladacycle will form pentaene 97. An in—situ release of the MIDA boronate to a free
boronic acid with sodium hydroxide in the presence of the palladium 2"d generation XPhos
palladacycle will form the all carbon linear framework of C1 SdeOAmB 98. After
saponification of methyl ester 98 with lithium hydroxide, a macrolactonization should then
afford macrolactone 99. A series of protecting group removals ing TMSE
deprotection with TBAF—tBuOH complex, global desilylation with HF—pyridine,
deketalization with trifluoroacetic acid, and Staudinger reduction of the C3 ’ azide with
trimethylphosphine should achieve the synthesis of Cl SdeOAmB.
Example 9. C15-deoxy AmB
Selective Acylation
See Scheme 25, Figure 36.
A second strategy which could arrive at C15deOAmB is outlined in Figure 13.
Upon producing a suitably protected intermediate, a selective acylation on could
provide solely a C15 acyl derivative. With this entially protected alcohol in hand,
protection of the remaining alcohols, followed by deacylation and deoxygenation of the
now free C-lS alcohol could arrive at an intermediate which is only a series of
dcprotcctions away from C1 5chAmB.
As shown in Scheme 25, starting with AmB a series of protecting group
manipulations including phenyl acyl formation, methyl ketal formation, methyl
esterification using diazomethane, and selective acetal formation ofboth the C,3 — C,5 diol
and the C9 — Q] 1 diol as oxy benzyl s arrives at suitably protected
intermediate 100. Acylation of 100 with p-nitro phenyl anhydride catalyzed by DMAP
selectively acylates the C-15 position. With this differentially ted alcohol 101 in
hand, a sequence of persilylation of the remaining alcohols, ed by deacylation,
W0 20151054148 2014/059334
activation of the now free C—15 alcohol as a thiocarbonyl, and radical deoxygenation
promoted by tributyltin hydride and AIBN should arrive at intermediate 102. A final
deprotection sequence val of the TES groups with HF-pyridine, followed by CSA
catalyzed ketal hydrolysis, methyl ester fication with m hydroxide, and final
enzymatic deacylation should provide access to ClSdeOAmB.
Example 10. C3 '-deamino AmB
Hybrid sis
See Scheme 26, Figure 37.
The synthesis of C3’deAAmB is grounded on the glycosylation of amphoternolide
103 strategy utilized in the synthesis of CZ’deoxyAmB by our group previously. Wilcock,
BC et al., JAm Chem Soc 13528488 (2013). We pate glycosylating 103 with o
sugar donor 104 to achieve the full carbon framework of C3’deaminoAmB. Subsequent
protecting group removal should provide efficient access to this derivative.
The synthesis of 104 begins with PMB ether 105, accessible from 2-fiiryl methyl
ketone as outlined in Scheme 8. Opening of epoxide 105 with a hydride selectively
generates C2’ alcohol 106. Introduction of the ZDMB ing group using EDC and
DMAP, followed by TBS silylation of the remaining alcohol provides pyran 107. DDQ
removal of the PMB protecting group and exchange for a trichloroacetimidate generates
mino sugar donor 104. With 104 in hand, we pate glycosylation to proceed
with exceptional beta selectivity under buffered chloro-methyl pyridinium triflate
conditions to provide 109. We then expect the ZDMB directing
group to be removed under
nger conditions with trimethylphosphine. An oxidation, reduction sequence of
alcohol 110 would then invert the stereochemistry at C2’ and provide alcohol 111. A
dcprotcction sequence of dcsilylation with HF-pyridinc, allyl cstcr removal with Pd(PPh3)4,
and thiosalicylic acid, and methyl ketal hydrolysis CSA in water and dimethylsulfoxide
(DMSO) should provide access to C3 ’deAAmB.
W0 54148
Example 11. C4 y AmB
Hybrid Synthesis
See Scheme 27, Figure 38.
The synthesis of AmB is grounded on the glycosylation of amphoternolide
103 strategy utilized in the synthesis of C2’deoxyAmB by our group previously. k,
BC et al., JAm Chem Soc 13528488 (2013). We anticipate glycosylating 103 with
deoxygenated sugar donor 112 to achieve the full carbon framework of C4’deoxyAmB.
Subsequent protecting group removal should provide efficient access to this derivative.
The synthesis of 112 begins with PMB ether 113, accessible fiom 2-furyl methyl
ketone as outlined in Scheme 8. Epoxide 113 is efficiently opened with sodium azide,
followed by introduction of the ZDMB directing group using EDC and DMAP generating
TBS ether 114. We then anticipate desilylation upon ent with HF providing a free
alcohol at (24’. The C4’ alcohol could then be removed after a ep procedure of
activation to a thiocarbonyl, followed by radical deoxygenation with tributyltin hydride and
AIBN to afford azide 115. DDQ removal of the PMB ting group and exchange for a
trichloroacetimidate would then generate C4’deoxy sugar donor 112. With 112 in hand, we
anticipate glycosylation to proceed with exception beta selectivity under buffered chloro-
methyl pyridinium triflate conditions to provide 117. We then expect the ZDMB directing
group to be removed under Staudinger conditions with trimethylphosphine with
concomitant reduction of the C3’ azide to an amine. ection with Fmoc-succinimide
would then provide alcohol 118. An oxidation, reduction sequence of alcohol # would then
invert the chemistry at C2’ and provide alcohol 119. A deprotection
sequence of
desilylation with HF-pyridine, allyl ester removal with Pd(PPh3)4, and thiosalicylic acid,
and methyl ketal hydrolysis CSA in water and dimethylsulfoxide (DMSO) should provide
access to C4’chAmB.
Example 12. In Vitro Assessment of Biological Activity
Each derivative proposed herein is tested for biological activity against both yeast
and human cells to determine its therapeutic index. A broth microdilution experiment
determines the MIC um inhibitory concentration) of each derivative t S.
cerevz‘sz'ae and the clinically relevant C. albicans, thereby ishing the antifungal
activity of each novel derivative. To test for toxicity against human cells, each compound
PCT/U82014/059334
is d to a hemolysis assay against red blood cells which ines the concentration
required to cause 90% lysis of human red blood cells (EH90). Additionally, each compound
is exposed to human y renal tubule cells to determine the toxicity of each compound
against kidney cells. These assays when compared against the known values ofAmB
against the same cell lines determine the improvement in therapeutic index of each
compound.
Example 13. In Vivo Assessment of ical Activity
The antifungal efficacies ofAmBMU and AmBAU were tested in a mouse model of
disseminated candidiasis. In this experiment neutropenic mice were infected with C.
albicans via the tail vein, and then 2 hours post infection the mice were treated with a single
intraperitoneal injection of AmB, AmBMU, or AmBAU. Then 2, 6, 12, and 24 hours post
infection the mice were sacrificed, and the fungal burden present in their kidneys was
quantified. Results are shown in Figure 39. Both AmBMU and AmBAU were
substantially more effective than AmB at reducing the fungal burden present in the kidneys
at all three tested doses (i.e., 1, 4, and 16 mg/kg). The differences were most pronounced at
the 16 mg/kg dose at 24 hours post inoculation. Relative to AmB, AmBMU reduced the
fungal burden by 1.2 log units (p 5 0.001), and AmBAU reduced the fungal burden by
nearly 3 log units (p S 0.0001). We speculate that an improved pharmacological profile,
potentially due to greatly increased water lity, may contribute to the unexpected and
dramatic improvements in in vivo antifungal activity for the new compounds.
in a separate set of experiments, acute toxicity was evaluated by single intravenous
stration of l, 2, 4, 8, 16, 32, or 64 mg/kg AmB or its tives to healthy mice,
followed by monitoring for lethality. Results are shown in Figure 40. All mice in the 4
mg/kg AmB dosage group died within seconds. AmBAU was drastically less toxic with
>50% lethality not being rcachcd until the 64 mg/kg dosage group. Strikingly, all mice
dosed with 64 mg/kg AmBMU survived with no able toxicity.
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Claims (12)
1. A compound, or a pharmaceutically acceptable salt thereof, ed from the group consisting of: AmBMU, AmBAU, and AmBCU.
2. Compound X
3. Compound 1
4. A method of making a C16 urea derivative of amphotericin B according to the transformation shown in Scheme 2: Scheme 2 wherein 1 represents 1; and R is ed from the group consisting of hydrogen, –CH2NH2, and –CH2C(O)OH.
5. Use of a compound of claim 1 in the manufacture of a medicament for inhibiting growth of a fungus.
6. Use of a compound of claim 1 in the manufacture of a medicament for treating a fungal infection.
7. The use of claim 6, wherein the medicament is to be administered orally.
8. The use of claim 6, wherein the medicament is to be administered intravenously.
9. A pharmaceutical composition, comprising a compound of claim 1; and a pharmaceutically acceptable carrier.
10. The ceutical composition of claim 9, wherein the pharmaceutical composition is an oral dosage form.
11. The pharmaceutical composition of claim 9, wherein the pharmaceutical composition is an intravenous dosage form.
12. The compound of claim 1, ntially as herein bed with reference to any one of the Examples and/or
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