NZ718201B2 - Hydrochloride salt form for ezh2 inhibition - Google Patents
Hydrochloride salt form for ezh2 inhibition Download PDFInfo
- Publication number
- NZ718201B2 NZ718201B2 NZ718201A NZ71820114A NZ718201B2 NZ 718201 B2 NZ718201 B2 NZ 718201B2 NZ 718201 A NZ718201 A NZ 718201A NZ 71820114 A NZ71820114 A NZ 71820114A NZ 718201 B2 NZ718201 B2 NZ 718201B2
- Authority
- NZ
- New Zealand
- Prior art keywords
- polymorph
- methyl
- ezh2
- ethyl
- ray powder
- Prior art date
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- 230000002401 inhibitory effect Effects 0.000 title abstract description 5
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Abstract
Provided herein are novel solid forms of N-((4,6-dimethyl-2-oxo-1,2-dihydropyridin-3-yl)methyl)-5 -(ethyl (tetrahydro-2H-pyran-4-yl)amino)-4-methyl-4'-(morpholinomethyl)-[1,1'-biphenyl]-3-carboxamide hydrochloride, and related compositions and methods, and its use as an inhibitor of histone methyltransferase activity of EZH2 for the treatment of EZH2-mediated cancers such as B cell lymphoma, non-Hodgkin's lymphoma and breast cancer. ansferase activity of EZH2 for the treatment of EZH2-mediated cancers such as B cell lymphoma, non-Hodgkin's lymphoma and breast cancer.
Description
HYDROCHLORIDE SALT FORM FOR EZH2 INHIBITION
RELATED APPLICATIONS
This application claims priority to, and the benefit of, the US. Provisional Application
No. ,786 filed r 16, 2013, the t of which is incorporated by reference in its
entirety.
TECHNICAL FIELD
This disclosure relates to solid crystalline forms of N-((4,6-dimethyloxo-1,2-
dihydropyridinyl)methyl)(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 ’-
(morpholinomethyl)-[1,1’-biphenyl]carboxamide hydrochloride, and related itions and
BACKGROUND OF THE INVENTION
More than 1.6 million people are ted to be diagnosed with cancer in 2013. For
example, one of the most common types of cancer in women is breast cancer, and this disease is
responsible for one of the highest fatality rates of all cancers affecting females. The current
treatment of breast cancer is limited to total, or partial, mastectomy, radiation therapy, or
chemotherapy. More than 232,340 cancer cases in 2013 will be breast cancer, which will result
in an ted 40,030 deaths. See, Siegel et al., CA: Cancer J. Clin. 2013; 63:11—30.
[004] A number of cancer deaths are caused by blood cancers including leukemias, as,
and lymphomas. In 2013, almost 80,000 cancer cases will be lymphomas, estimated to result in
over 20,000 deaths.
Radiation therapy, chemotherapy, and surgery are the primary methods of cancer
treatment. However, these therapies are most successful only when the cancer is ed at an
early stage. Once cancer reaches invasive/metastatic stages, lines of invading cells or
metastasizing cells can escape detection, thus resulting in relapses, which requires the use of
therapy that is highly toxic. At this point, both the cancer cells and the patient’s unaffected cells
are exposed to the toxic therapy, resulting with, among other complications, a weakening of the
immune . As such, there remains a need in the art for new methods for treating cancer,
such as breast cancer or lymphoma, in a patient.
SUMMARY OF THE INVENTION
Accordingly, provided herein are novel solid forms (e.g., crystalline forms) of N-((4,6-
dimethyloxo-l ,2-dihydropyridin-3 -yl)methyl)-5 l (tetrahydro-2H-pyranyl)amino)
methyl-4 ’ -(morpholinomethyl)- [l , l ’ -biphenyl] -3 -carboxamide hydrochloride:
O N
O H I ° HCI
/\N N \
One embodiment of the invention is directed to Polymorph C of N-((4,6-dimethyloxo-
l ,2-dihydropyridin-3 thyl)-5 -(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 ’ -
(morpholinomethyl)-[l,l ’-biphenyl]carboxamide hydrochloride .
In one embodiment,
Polymorph C is substantially free of impurities, meaning there is not a significant amount of
impurities present in the sample of Polymorph C. In another embodiment, Polymorph C is a
lline solid substantially free of amorphous N-((4,6-dimethyloxo-l,2-dihydropyridin
yl)methyl)-5 -(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 ’ -(morpholinomethyl)-[ l , l ’ -
biphenyl]carboxamide (or any of its amorphous mono- or multi-HCl forms). The skilled
artisan understands that a solid sample of Polymorph C may also include Polymorph A,
Polymorph B, and/or amorphous 6-dimethyloxo-l,2-dihydropyridinyl)methyl)
(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 pholinomethyl)- [l , l ’ -biphenyl] -3 -
carboxamide (or any of its amorphous mono- or multi-HCl forms).
Polymorph C of N-((4,6-dimethyloxo-l ,2-dihydropyridinyl)methyl)(ethyl
hydro-2H-pyranyl)amino)methyl-4 ’-(morpholinomethyl)- [l , l ’ -biphenyl] -3 -
carboxamide hydrochloride can be defined according to its X-ray powder diffraction pattern.
Accordingly, in one embodiment, Polymorph C exhibits an X-ray powder ction pattern
having teristic peaks expressed in degrees 2-theta (+/- 0.2) at 17.53, 18.66, 21.14, 22.22,
23.46, 27.72 and 30.30.
In one embodiment, Polymorph C ts an X-ray powder ction pattern having
peaks with 2-theta values substantially in accordance with Figure 3. In another embodiment,
Polymorph C exhibits an X-ray powder diffraction pattern having peaks with 2-theta values
substantially in accordance with Table 3.
Polymorph C can also be defined according to its differential scanning calorimetry
thermogram. In one embodiment, the polymorph exhibits a differential ng metry
thermogram showing a primary erm expressed in units of CC at a temperature of 228 +/-5
c’C. In another embodiment, Polymorph C exhibits a differential scanning metry
thermogram substantially in ance with the lowermost plot shown in Figure 4 (i.e.,
“Polymorph C” plot).
[011] Another aspect of the invention relates to the preparation of rph C using a method
comprising combining N-((4,6-dimethyloxo-1,2-dihydropyridinyl)methyl)(ethyl
(tetrahydro-2H-pyranyl)amino)methyl-4 ’-(morpholinomethyl)- [1 , 1 ’ -biphenyl] -3 -
carboxamide with hydrochloric acid.
Another aspect of the invention relates to the preparation of, ed herein is a method
of recrystallizing Polymorph C, which comprises the following steps: (a) dissolVing Polymorph
C in a first solvent to obtain a first solution, and (b) adding a second solvent to the first on,
such that said polymorph is recrystallized.
In still another aspect, provided herein is a pharmaceutical composition comprising
Polymorph C, and optionally a pharmaceutically acceptable carrier or diluent. In one
embodiment, the pharmaceutical composition comprises Polymorph C and a pharmaceutically
acceptable carrier or diluent.
Also provided herein is a method of treating an EZH2-mediated cancer comprising
administering to a t in need thereof a therapeutically effective amount of Polymorph C, or
a pharmaceutical composition thereof. A variety of EZH2-mediated cancers may be treated with
Polymorph C, including non-Hodgkin’s lymphoma, B cell lymphoma ing diffuse large B
cell lymphoma (DLBCL), follicular lymphoma, or solid tumors including breast cancer.
In another aspect, provided herein is a method of inhibiting the histone methyltransferase
activity of EZH2 in a t in need thereof comprising administering to the subject an effective
amount of Polymorph C, or a pharmaceutical composition f.
In still r aspect, provided herein is a method of inhibiting the histone
methyltransferase activity of EZH2 in vitro comprising administering Polymorph C or a
pharmaceutical composition thereof.
Also ed herein is the use of Polymorph C, or a pharmaceutical composition
thereof, for the preparation of a medicament for the treatment of an EZH2-mediated cancer in a
subject in need thereof.
Another aspect of this invention is a method of treating or preventing an EZH2-mediated
disorder. The method includes administering to a subject in need thereof a eutically
effective amount of one or more polymorphs disclosed herein. The EZH2-mediated disorder is a
disease, disorder, or condition that is mediated at least in part by the ty of EZH2. In one
embodiment, the EZH2-mediated disorder is related to an increased EZH2 activity. In one
embodiment, the sed EZH2 activity is due to a on in the SET domain of EZH2. In
one ment, the mutation is at Y641, A677, or A687, or a combination f In one
embodiment, the EZH2 mutation increases trimethylation of Lys27 of histone H3 7). In
one embodiment, the EZH2-mediated er is a cancer. The EZH2-mediated cancer may be
lymphoma, leukemia or melanoma, for example, diffilse large B-cell lymphoma (DLBCL), non-
Hodgkin’s lymphoma (NHL), follicular lymphoma, chronic myelogenous leukemia (CML),
acute myeloid leukemia, acute lymphocytic leukemia, mixed lineage leukemia, or
myelodysplastic syndromes (MDS). In one embodiment the EZH2-mediated cancer may be a
malignant rhabdoid tumor or INIl-defecient tumor. The histologic diagnosis of malignant
rhabdoid tumor depends on identification of characteristic rhabdoid cells (large cells with
eccentrically located nuclei and abundant, eosinophilic asm) and immunohistochemistry
with antibodies to vimentin, keratin and epithelial membrane antigen. In most malignant
rhabdoid tumors, the SMARCBl/INIl gene, located in chromosome band 22q11.2, is inactivated
WO 57859
by deletions and/or ons. In one embodiment, the malignant rhabdoid tumors may be INIl-
defecient tumor.
Unless otherwise , any description of a method of treatment includes uses of the
polymorphs to e such treatment or prophylaxis as is described in the specification, as well
as uses of the polymorphs to prepare a medicament to treat or prevent such ion. The
treatment includes treatment of human or non-human animals including rodents and other
disease models.
Further, the polymorphs or methods described herein may be used for research (e.g.,
studying epigenetic enzymes) and other non-therapeutic purposes.
BRIEF DESCRIPTION OF THE GS
Figure 1 depicts a representative X-ray powder diffraction pattern of Polymorph A.
Figure 2 depicts a representative X-ray powder diffraction pattern of Polymorph B.
Figure 3 depicts a representative X-ray powder diffraction n of Polymorph C.
[024] Figure 4 depicts differential ng calorimetry (DSC) data for Polymorphs A, B and C.
Figure 5 depicts dynamic vapor sorption (DVS) data for Polymorph C.
Figure 6 depicts DVS data for Polymorph A.
Figure 7 depicts DSC data for Polymorph A.
DETAILED DESCRIPTION OF THE INVENTION
The solid form (e.g., crystal state) of a compound may be important when the compound
is used for pharmaceutical purposes. Compared with an amorphous solid, the solid physical
properties of a crystalline compound may change from one solid form to another, which may
impact its suitability for pharmaceutical use. In addition, different solid forms of a lline
compound may incorporate different types and/or different amounts of ties. Different
solid forms of a compound may also have different chemical stability upon exposure to heat,
light and/or moisture (e.g., atmospheric moisture) over a period of time, or different rates of
dissolution. There remains a need for solid crystalline forms ofN-((4,6-dimethyloxo-l,2-
opyridinyl)methyl)(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 ’-
(morpholinomethyl)-[l ,l ’-biphenyl]carboxamide that are not hygroscopic, and that exhibit
improved chemical ity for use in drug substance and drug product development.
Provided herein are novel crystalline forms ofN-((4,6-dimethyloxo-l,2-
dihydropyridinyl)methyl)(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 ’-
(morpholinomethyl)- [l , l ’ -biphenyl] -3 -carboxamide hydrochloride:
O H | - HCI
Described herein are rphic forms A, B and C ofN—((4,6-dimethyloxo-l,2-
dihydropyridinyl)methyl)(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 ’-
(morpholinomethyl)-[l ,l ’-biphenyl]carboxamide hydrochloride (also referred to herein
respectively as “Polymorph A”, “Polymorph B” and “Polymorph C”).
As used , “Compound 1” refers to N—((4,6-dimethyloxo-l ,2-dihydropyridin
yl)methyl)-5 -(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 ’ -(morpholinomethyl)-[ l , l ’ -
biphenyl]carboxamide. The hydrochloride (i.e., hloride salt) of Compound I may be
used to inhibit the histone methyltransferase activity of EZH2, either in a subject or in vitro. The
hydrochloride of Compound I may also be used to treat EZH2-mediated cancer in a subject in
need thereof.
Compound I can be protonated at one or more of its basic sites, such as the morpholine,
tituted aniline, and/or pyridone moieties. The compound may be protonated at any basic
site. Without being d to the following, it is ed that Compound I is protonated at the
nitrogen of the morpholino substituent, providing a hydrochloride of Compound I having the
following structure:
H |
/\N N\
C] O
If there is any discrepancy as to the identity of Polymorph C as between (i) the above structure
and (ii) the compound identified by the data of Figures 3, 5 and the lowest plot depicted in
Figure 4, the latter (i.e., Figures of (ii)) shall control.
The monohydrochloride drawn in the preceding paragraph can be ed to as “4-((3’-
(((4,6-dimethyloxo- l ,2-dihydropyridinyl)methyl)carbamoyl)-5 ’ -(ethyl(tetrahydro-2H-
pyranyl)amino)-4 ’ -methyl- [1 , l ’ -biphenyl]yl)methyl)morpholinium de.” The
monohydrochloride salt ofN—((4,6-dimethyloxo- l ,2-dihydropyridinyl)methyl)(ethyl
hydro-2H-pyranyl)amino)methyl-4 ’-(morpholinomethyl)- [l , l ’ -biphenyl] -3 -
carboxamide can be produced in a highly crystalline form, which is useful in the preparation of
pharmaceutical formulations, and will improve general handling, manipulation, and storage of
the drug compound. In a red embodiment, the crystalline form of the hydrochloride salt of
nd I is in a form referred to as “Polymorph C.” As described herein, Polymorph C
exhibits physical properties that can be exploited in order to obtain new pharmacological
properties, and that may be utilized in drug substance and drug product development.
The ability of a substance to exist in more than one crystal form is defined as
polymorphism; the different crystal forms of a particular substance are referred to as
“polymorphs” of one another. In general, polymorphism is affected by the ability of a le
of a substance (or its salt or hydrate) to change its conformation or to form different
intermolecular or intra-molecular ctions, (e.g., different hydrogen bond configurations),
which is reflected in different atomic arrangements in the crystal lattices of different rphs.
In contrast, the overall external form of a substance is known as “morphology,” which refers to
the external shape of the crystal and the planes present, without reference to the internal
structure. A particular crystalline polymorph can display ent morphology based on
different conditions, such as, for example, growth rate, stirring, and the presence of impurities.
The different polymorphs of a nce may possess different es of the crystal
lattice and, thus, in solid state they can show different physical properties such as form, density,
melting point, color, stability, solubility, dissolution rate, etc., which can, in turn, effect the
stability, ution rate and/or bioavailability of a given polymorph and its suitability for use as
a pharmaceutical and in pharmaceutical compositions.
Polymorph C has a number of advantageous physical properties over its free base form,
as well as other salts of the free base. In ular, rph C has low hygroscopicity
compared to other salt forms of Compound I. More particularly, Polymorph C has low
hygroscopicity compared to rph A (i.e., another polymorph form of N—((4,6-dimethyl
oxo- l ,2-dihydropyridin-3 -yl)methyl)-5 -(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 -
(morpholinomethyl)-[l,l ’-biphenyl]carboxamide hydrochloride) (see, e. g., Figures 5 and 6).
For consistency with drug formulation (e.g., tableting), it is generally required that the
polymorphic form of the active pharmaceutical ingredient (API) compound be minimally
hygroscopic. Drug forms that are highly hygroscopic may also be unstable, as the drug form’s
dissolution rate (and other physico-chemical properties) may change as it is stored in settings
with varying humidity. Also, hygroscopicity can impact large-scale handling and manufacturing
of a nd, as it can be difficult to determine the true weight of a hygroscopic active agent
when preparing a pharmaceutical composition comprising that agent. For example, in large scale
tableting or other medicinal formulating preparations, highly hygroscopic compounds can result
in batch manufacturing inconsistency creating clinical and/or prescribing difficulties. Polymorph
C has a low hygoscopicity compared to other salt forms of Compound I. As such, it may be
stored over appreciable periods or conditions (e.g., ve humidity conditions), and not suffer
from detrimental ating changes.
In certain embodiments, rph C is identifiable on the basis of teristic peaks
in an X-ray powder diffraction analysis. X-ray powder diffraction pattern, also referred to as
XRPD pattern, is a scientific technique involving the scattering of x-rays by crystal atoms,
producing a diffraction pattern that yields information about the structure of the l. In
certain embodiments, Polymorph C exhibits an X-ray powder diffraction pattern haVing from
two (2) to seven (7) characteristic peaks expressed in degrees 2-theta at 17.53, 18.66, 21.14,
22.22, 23.46, 27.72 and 30.30.
[03 8] The skilled artisan recognizes that some variation is associated with 2-theta
measurements. Typically, 2-theta values may vary from 0.1 to 0.2. Such slight variation can
be caused, for example, by sample preparation and other experimental s. The skilled
artisan appreciates that such variation in values are greatest with low 2-theta , and least
with high 2-theta values. The d artisan recognizes that different instruments may provide
substantially the same XRPD pattern, even though the 2-theta values vary somewhat. Moreover,
the skilled artisan appreciates that the same instrument may provide substantially the same
XRPD pattern for the same or different samples even though the XRPD of the respectively
ted XRPD ns vary slightly in the 2-theta values.
The skilled artisan also iates that XRPD patterns of the same sample (taken on the
same or different instruments) may exhibit variations in peak intensity at the different 2-theta
values. The skilled artisan also appreciates that XRPD patterns of different samples of the same
polymorph (taken on the same or different instruments) may also exhibit variations in peak
intensity at the different 2-theta values. XRPD patterns can be substantially the same pattern
even though they have corresponding 2-theta signals that vary in their peak intensities.
In one embodiment, Polymorph C exhibits an X-ray powder diffraction pattern having
two or more characteristic peaks expressed in degrees 2-theta (+/- 0.2) at 17.53, 18.66, 21.14,
22.22, 23.46, 27.72 and 30.30. In another embodiment, Polymorph C exhibits an X-ray powder
diffraction pattern having three or more characteristic peaks expressed in degrees 2-theta (+/-
0.2) at 17.53, 18.66, 21.14, 22.22, 23.46, 27.72 and 30.30. In r embodiment, Polymorph C
exhibits an X-ray powder diffraction n having four or more teristic peaks expressed
in s a (+/- 0.2) at 17.53, 18.66, 21.14, 22.22, 23.46, 27.72 and 30.30. In another
embodiment, rph C exhibits an X-ray powder diffraction pattern having characteristic
peaks expressed in degrees 2-theta (+/- 0.2) at 17.53, 21.14, 23.46 and 27.72.
In a particular embodiment, Polymorph C exhibits an X-ray powder diffraction pattern
having at least eight characteristic peaks expressed in degrees a (+/- 0.2), selected from the
group consisting of 10.08, 10.94, 16.58, 17.12, 17.53, 18.34, 18.66, 20.50, 21.14, 21.92, 22.22,
23.46, 26.22, 26.60, 27.72, and 30.30. In another particular embodiment, Polymorph C exhibits
an X-ray powder ction pattern having at least nine teristic peaks expressed in degrees
2-theta (+/- 0.2), selected from the group consisting of 10.08, 10.94, 16.58, 17.12, 17.53, 18.34,
18.66, 20.50, 21.14, 21.92, 22.22, 23.46, 26.22, 26.60, 27.72, and 30.30.
In one embodiment, Polymorph C exhibits an X-ray powder diffraction pattern having a
characteristic peaks expressed in degrees 2-theta (+/- 0.2) at 27.72.
Pharmaceutical compositions comprising Polymorph C can be identified by comparison
of the compositions’ X-ray powder diffraction patterns to an X-ray powder diffraction pattern of
rph C. It will be appreciated that pharmaceutical compositions comprising Polymorph C
may exhibit non-identical X-ray powder diffraction ns that are substantially the same
pattern as compared to Fig. 3. Observed slight differences in XRPD patterns may be attributed
to the aforementioned factors, including the presence of other impurities in the sample.
In other embodiments of the invention, Polymorph C is identifiable on the basis of a
characteristic peak observed in a differential scanning calorimetry thermogram. Differential
scanning calorimetry, or DSC, is a thermoanalytical technique in which the difference in the
amount of heat required to increase the temperature of a sample and reference is measured as a
function of temperature. In one embodiment, Polymorph C exhibits a differential scanning
metry thermogram showing a characteristic peak expressed in units of CC with an onset
temperature of about 230 +/- 5 0C. In another ment, Polymorph C exhibits a differential
ng calorimetry thermogram showing a teristic primary endotherm expressed in units
of CC at a temperature of about 228 +/- 5 CC. In another embodiment, Polymorph C exhibits a
differential ng calorimetry thermogram substantially in accordance with Figure 4.
In r ment of the invention, provided herein is Polymorph C characterized as
a solid form ofN—((4,6-dimethyloxo-1,2-dihydropyridinyl)methyl)(ethyl (tetrahydro-
2H-pyranyl)amino)methyl-4 ’-(morpholinomethyl)-[1 ,1 ’ -biphenyl]carboxamide
hydrochloride, wherein the solid form undergoes a weight increase of less than 1.5% upon
increasing relative humidity from 5.0% to 95.0%. In another ment, Polymorph C is
terized as having a dynamic vapor sorption profile that is substantially in accordance with
Figure 5.
In certain embodiments, a sample of Polymorph C may contain impurities. Non-limiting
es of impurities include other polymorph forms, or residual c and inorganic
WO 57859
molecules such as related impurities (e.g., intermediates used to make Polymorph C or fragments
thereof), solvents, water or salts. In one embodiment, a sample of Polymorph C is substantially
free from ties, meaning that no significant amount of impurities are present. In another
embodiment, a sample of Polymorph C contains less than 10% weight by weight (wt/wt) total
impurities. In another embodiment, a sample of Polymorph C ns less than 5% wt/wt total
impurities. In another embodiment, a sample of Polymorph C ns less than 2% wt/wt total
impurities. In another embodiment, a sample of Polymorph C contains less than 1% wt/wt total
impurities. In yet another embodiment, a sample of Polymorph C ns less than 0. l% wt/wt
total impurities.
[047] In certain embodiments, a sample of Polymorph C is a crystalline solid substantially free
of ous Compound I (or any of its amorphous mono- or multi-HCl forms). As used
, the term “substantially free of amorphous Compound I” means that the compound
ns no significant amount of amorphous Compound I (or any of its ous mono- or
multi-HCl forms). In another embodiment, a sample of crystalline Compound I comprises
Polymorph C substantially free of Polymorph A and/or B. As used herein, the term
“substantially free of Polymorph A and/or B” means that a sample of crystalline nd I
hydrochloride contains no significant amount of Polymorph A and/or B. In certain
embodiments, at least about 90% by weight of a sample is Polymorph C, with only 10% being
Polymorph A and/or B and/or amorphous Compound I (or any of its amorphous mono- or multi-
HCl forms). In certain embodiments, at least about 95% by weight of a sample is Polymorph C,
with only 5% being Polymorph A and/or B and/or amorphous Compound I (or any of its
amorphous mono- or multi-HCl forms). In still other embodiments of the invention, at least
about 98% by weight of a sample is Polymorph C, with only 2% by weight being Polymorph A
and/or B and/or amorphous Compound I (or any of its amorphous mono- or multi-HCl forms).
In still other embodiments of the invention, at least about 99% by weight of a sample is
Polymorph C, with only 1% by weight being Polymorph A and/or B and/or amorphous
Compound I (or any of its ous mono- or multi-HCl forms). In still other embodiments of
the invention, at least about 99.5% by weight of a sample is Polymorph C, with only 0.5% by
weight being rph A and/or B and/or amorphous Compound I (or any of its amorphous
mono- or multi-HCl forms). In still other embodiments of the invention, at least about 99.9% by
weight of a sample is Polymorph C, with only 0.1% by weight being rph A and/or B
and/or amorphous Compound I (or any of its amorphous mono- or HCl forms).
rph C may occur as any able tautomer, or a mixture of reasonable
tautomers. As used herein, “tautomer” refers to one of two or more structural isomers that exist
in equilibrium and are readily converted from one isomeric form to another. Examples include
keto-enol tautomers, such as acetone/propenol, and the like. Polymorph C may have one or
more tautomers and therefore include various s, z'.e. and the
, pyridin-2(lH)-one
corresponding pyridinol. All such isomeric forms of these compounds are expressly ed
in the present invention.
Preparation 0fP01ym0rphs
General techniques for making polymorphs are understood by the skilled artisan.
Conventionally, a salt form is prepared by combining in solution the free base compound and an
acid containing the anion of the salt form desired, and then isolating the solid salt product from
the reaction solution (e.g., by crystallization, precipitation, ation, etc.). Other orming
techniques may be employed.
Once a rph is prepared, it may be recrystallized, using the same solvent (or
solvents) that were used to prepare the polymorph, or a different solvent (or solvents), to produce
a composition that has increased crystallinity. In l, polymorphs may be recrystallized by
dissolving the polymorph in one or more solvents, optionally heating, ed by an optional
cooling step, and then isolating the crystal structure, through, e.g., a filtering step. After the
polymorph is initially dissolved in the first solvent (or combination of solvents), an additional,
different solvent may be added at any point in the process (before or after heating, before or after
g, etc.) to produce the desired l structure. For example, a first solvent may be used
to dissolve the polymorph compound, and then a second solvent (e.g., an anti-solvent) may be
added to cause the polymorph to precipitate from solution.
Non-limiting examples of solvents that may be used for the recrystallization of
polymorphs are as follows: methanol, l, ethyl acetate, methyl tert-butyl ether, water,
isopropyl alcohol, tetrahydrofuran, acetone, acetonitrile, and 2-methyltetrahydrofiaran, as well as
combinations thereof. Non-limiting examples of solvent combinations that are useful for the
recrystallization of polymorphs are (solvent and anti-solvent, wherein water can be added to the
first solvent to aid in dissolving the polymorph): methanol/water and ethyl e, pyl
alcohol/water and ethyl acetate, tetrahydrofuran/water and ethyl acetate, acetone and ethyl
acetate, acetonitrile/water and ethyl acetate, ethanol/water and methyl tert-butyl ether, isopropyl
alcohol/water and methyl tert-butyl ether, l/water and ydrofuran, isopropyl
alcohol/water and acetone, and ethanol/water and ethyl e. In particular embodiments, the
solvent combinations may be ethanol/water and ethyl acetate, methanol and ethyl acetate, and
ethanol and ethyl acetate.
In one aspect, provided herein is a method of preparing Polymorph C ofN—((4,6-
dimethyloxo-l ,2-dihydropyridin-3 -yl)methyl)-5 -(ethyl (tetrahydro-2H-pyranyl)amino)
methyl-4 ’ -(morpholinomethyl)-[l , l enyl]carboxamide hydrochloride comprising
combining N—((4,6-dimethyloxo-l ,2-dihydropyridinyl)methyl)(ethyl (tetrahydro-2H-
pyranyl)amino)methyl-4 ’ -(morpholinomethyl)-[ l , l ’ -biphenyl] -3 -carboxamide with
hydrochloric acid.
[053] In one embodiment, the method of making Polymorph C comprises the steps:
a) ving N—((4,6-dimethyloxo-l ydropyridin-3 -yl)methyl)(ethyl
(tetrahydro-2H-pyranyl)amino)methyl-4 ’-(morpholinomethyl)- [l , l ’ -biphenyl] -3 -
carboxamide in a first solvent to obtain a solution;
b) Combining hydrochloric acid with the solution;
c) Combining a second solvent with the solution;
d) Precipitating or crystallizing Polymorph C ofN—((4,6-dimethyloxo-l ,2-
dihydropyridinyl)methyl)-5 -(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 ’ -
(morpholinomethyl)-[l,l ’-biphenyl]carboxamide monohydrochloride from the on; and
e) Collecting Polymorph C ofN—((4,6-dimethyloxo-l,2-dihydropyridin
yl)methyl)-5 -(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 ’ -(morpholinomethyl)-[ l , l ’ -
biphenyl]carboxamide monohydrochloride.
In one embodiment of the method, the first solvent comprises ethanol. In r
embodiment, the hydrochloric acid is in a concentrated aqueous solution. In still another
ment, the second solvent comprises ethyl acetate. In other embodiments, one or more of
the solutions of steps a), b) or c) is heated.
2014/060724
In an embodiment, water is added to the first solvent to aid in dissolving the polymorph.
In a particular embodiment of the method of making Polymorph C, a suspension ofN-
((4,6-dimethyloxo- l ,2-dihydropyridin-3 thyl)-5 -(ethyl(tetrahydro-2H—pyran
yl)amino)methyl-4’-(morpholinomethyl)-[l,l ’-biphenyl]carboxamide (about 1 equivalent)
in ethanol (about 1 ) is heated, and treated with hydrochloric acid (about 1 equivalent).
The mixture is stirred at elevated temperature, and is then treated with ethyl acetate (about 2
volumes). The resulting mixture is stirred at elevated temperature and is then slowly cooled to
room temperature. The resulting precipitate is filtered, washed with ethyl e and dried to
give Polymorph C.
[05 7] In another aspect, ed herein is a method of tallizing rph C, which
comprises the following steps: (a) dissolving Polymorph C in a first solvent to obtain a first
solution, and (b) adding a second solvent, such that said polymorph is recrystallized. In one
embodiment, the method comprises (a) dissolving Polymorph C in ethanol, (b) heating the
mixture, (c) adding ethyl acetate to the mixture, forming a precipitate comprising said
polymorph, and filtering the precipitate such that said polymorph is recrystallized. In one
embodiment, the first solvent is ethanol, and the second t is ethyl acetate. In another
embodiment, the first solvent is ethanol and water, and the second solvent is ethyl acetate. In
another embodiment, the first t is methanol, and the second solvent is ethyl acetate. In
some embodiments, the method further comprises heating the first solution prior to adding the
second solvent.
[05 8] In r aspect, provided herein is Polymorph B of N—((4,6-dimethyloxo-l,2-
dihydropyridinyl)methyl)(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4 ’-
olinomethyl)-[l ,l ’-biphenyl]carboxamide hydrochloride. In one embodiment,
Polymorph B exhibits an X-ray powder diffraction pattern substantially in accordance with
Figure 2. In another embodiment, Polymorph B exhibits an X-ray powder diffraction pattern
substantially in accordance with Table 2. In another embodiment, Polymorph B exhibits a
differential scanning calorimetry thermogram having an onset ature sed in units of
CC at a temperature of 105 +/- 5 CC. In another embodiment, Polymorph B exhibits a DSC
thermogram ntially in accordance with Figure 4. In another embodiment, Polymorph B
exhibits a DSC thermogram substantially in accordance with Table 4.
Pharmaceutical Compositions
[05 9] In another aspect, provided herein is a pharmaceutical composition comprising
polymorphs of the present invention (e.g., Polymorph C), and optionally a pharmaceutically
able carrier or diluent. Also provided herein is a ceutical composition comprising
polymorphs of the present invention (e.g., Polymorph C) and a pharmaceutically acceptable
carrier or diluent.
The term “pharmaceutical composition” includes preparations suitable for administration
to mammals, e. g., humans. When the compounds of the present invention are administered as
pharmaceuticals to mammals, e.g., humans, they can be given per se or as a pharmaceutical
composition containing, for example, 0.1% to 99.9% (more preferably, 0.5 to 90%) of active
ingredient in combination with a pharmaceutically acceptable carrier.
The rphs described herein (e.g., Polymorph C) may be combined with a
pharmaceutically acceptable r according to conventional pharmaceutical compounding
techniques. As used herein, aceutically acceptable carrier” may include any and all
solvents, diluents, or other liquid vehicle, dispersion or suspension aids, surface active agents,
ic , thickening or emulsifying agents, preservatives, solid binders, ants and the
like, as suited to the particular dosage form desired. Remington’s Pharmaceutical Sciences,
nth Edition, E. W. Martin (Mack Publishing Co., Easton, Pa., 1980) discloses various
carriers used in formulating pharmaceutical compositions and known techniques for the
preparation thereof. Except insofar as any conventional carrier medium is incompatible with the
compounds such as by ing any undesirable biological effect or otherwise interacting in a
deleterious manner with any other component(s) of the pharmaceutical composition, its use is
contemplated to be within the scope of this invention. Some examples of als which can
serve as pharmaceutically acceptable carriers include, but are not limited to, sugars such as
lactose, glucose and e; starches such as corn starch and potato starch; cellulose and its
tives such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate;
powdered anth; malt; gelatine; talc; excipients such as cocoa butter and suppository waxes;
oils such as peanut oil, cottonseed oil; safflower oil, sesame oil; olive oil; corn oil and soybean
oil; glycols; such as propylene glycol; esters such as ethyl oleate and ethyl laurate; agar;
buffering agents such as magnesium ide and aluminum hydroxide; alginic acid; pyrogen
free water; isotonic ; Ringer’s on; ethyl l, and phosphate buffer solutions, as
well as other non-toxic compatible lubricants such as sodium lauryl sulfate and magnesium
stearate, as well as coloring agents, releasing agents, coating agents, sweetening, flavoring and
perfuming , preservatives and antioxidants can also be present in the composition,
ing to the judgment of the formulator.
Furthermore, the carrier may take a wide y of forms depending on the form of the
preparation desired for administration, e.g. oral, nasal, rectal, l, parenteral (including
intravenous injections or infusions). In preparing compositions for oral dosage form any of the
usual pharmaceutical media may be employed. Usual pharmaceutical media include, for
example, water, glycols, oils, alcohols, flavoring agents, vatives, ng agents, and the
like in the case of oral liquid preparations (such as for example, suspensions, solutions,
emulsions and elixirs); aerosols; or carriers such as starches, sugars, microcrystalline cellulose,
diluents, granulating agents, lubricants, binders, disintegrating agents and the like, in the case of
oral solid preparations (such as for example, powders, capsules, and tablets).
ceutical compositions sing the polymorphs of the present invention (e.g.,
Polymorph C) may be formulated to have any concentration desired. In some embodiments, the
composition is formulated such that it comprises at least a therapeutically effective amount. As
used herein, “therapeutically effective amount” means that amount necessary to make a clinically
observed improvement in the patient. In some embodiments, the composition is formulated such
that it comprises an amount that would not cause one or more unwanted side effects.
ceutical compositions include those suitable for oral, sublingual, nasal rectal,
vaginal, topical, buccal and parenteral ding subcutaneous, intramuscular, and intravenous)
administration, although the most suitable route will depend on the nature and severity of the
condition being treated. The compositions may be conveniently presented in unit dosage form,
and prepared by any of the methods well known in the art of cy. In certain embodiments,
the pharmaceutical composition is formulated for oral administration in the form of a pill,
capsule, lozenge or tablet. In other embodiments, the ceutical composition is in the form
of a suspension.
The compounds provided herein are suitable as an active agent in pharmaceutical
compositions that are efficacious ularly for treating EZH2-associated disorders, especially
cancer. The pharmaceutical composition in various embodiments has a pharmaceutically
ive amount of a polymorph of the present invention (e.g., Polymorph C), along with other
pharmaceutically acceptable ents, carriers, fillers, diluents and the like.
A therapeutically or ceutically “effective amount” is an amount of a polymorph of
the t invention (e.g., Polymorph C), that when stered to a patient, ameliorates a
m of an EZH2-mediated disease or condition, e.g., t the various morphological and
somatic symptoms of an EZH2-mediated cancer. The amount can vary depending on such
factors as the size and weight of the subject, the type of illness, or the particular compound of the
invention. The amount of a polymorph of the t invention (e.g., Polymorph C) that
constitutes an “effective amount” will vary depending on the compound, the e state and its
severity, the age of the patient to be d, and the like. The effective amount can be
determined ely by one of ordinary skill in the art having regard to their knowledge and to
this disclosure.
The regimen of administration can affect what constitutes a pharmaceutically effective
amount. A polymorph of the present invention (e.g., Polymorph C), and compositions thereof,
can be administered to the t either prior to or after the onset of a disease. Further, several
divided dosages, as well as staggered dosages can be administered daily or sequentially, or the
dose can be continuously infused, or can be a bolus injection. r, the dosages can be
proportionally increased or decreased as indicated by the exigencies of the therapeutic or
prophylactic situation. Further, the dosages may be co-administered in combination with other
chemotherapeutic agents known by the skilled artisan.
Methods ofTreatment
Polymorphs of the present invention (e.g., Polymorph C) inhibit the histone
methyltransferase activity of EZH2 or a mutant thereof and, accordingly, in one aspect of the
invention, certain polymorphs disclosed herein are candidates for treating, or preventing certain
conditions and diseases in which EZH2 plays a role. The present invention provides methods for
treating conditions and diseases the course of which can be influenced by modulating the
WO 57859
methylation status of histones or other proteins, n said methylation status is mediated at
least in part by the activity of EZH2. Modulation of the methylation status of histones can in
turn influence the level of sion of target genes ted by methylation, and/or target
genes suppressed by methylation. The method includes administering to a subject in need of
such treatment, a therapeutically effective amount of a polymorph of the present invention (e.g.,
Polymorph C).
Unless otherwise stated, any description of a method of treatment includes uses of the
polymorphs to provide such treatment or prophylaxis as is described in the specification, as well
as uses of the polymorphs to prepare a medicament to treat or prevent such condition. The
treatment es treatment of human or non-human animals including rodents and other
disease models.
In still another aspect, this invention relates to a method of modulating the activity of the
EZH2, the catalytic subunit of the PRC2 complex which catalyzes the mono- h tri-
methylation of lysine 27 on histone H3 7) in a subject in need thereof. For example, the
method comprises the step of administering to a subject having a cancer expressing a mutant
EZH2 (e.g., a Y64l mutant of EZH2) a eutically effective amount of a polymorph
bed herein, wherein the polymorph inhibits e methyltransferase activity of EZH2,
thereby treating the cancer.
For example, the ediated cancer is selected from the group consisting of
follicular lymphoma and diffuse large B-cell lymphoma (DLBCL) of germinal center B cell-like
(GCB) subtype. For example, the cancer is lymphoma, leukemia or melanoma. Preferably, the
lymphoma is non-Hodgkin’s lymphoma (NHL), follicular lymphoma or diffilse large B-cell
lymphoma. Alternatively, the leukemia is c myelogenous leukemia (CML), acute myeloid
leukemia, acute lymphocytic ia or mixed lineage leukemia.
[072] For example, the EZH2-mediated precancerous condition is myelodysplastic syndromes
(MDS, formerly known as kemia).
For example, the EZH2-mediated cancer is a hematological cancer.
The polymorph of the present invention (e.g., rph C) inhibits the histone
methyltransferase activity of EZH2 or a mutant thereof and, accordingly, the present invention
also provides methods for treating conditions and diseases the course of which can be influenced
by modulating the ation status of histones or other proteins, wherein said methylation
status is mediated at least in part by the activity of EZH2. In one aspect of the invention, certain
polymorphs disclosed herein are candidates for treating, or preventing certain conditions and
diseases. Modulation of the ation status of histones can in turn influence the level of
expression of target genes activated by methylation, and/or target genes suppressed by
methylation. The method includes administering to a subject in need of such treatment, a
therapeutically effective amount of a polymorph of the present invention.
As used herein, a ct” is interchangeable with a “subject in need f’, both of
which refer to a subject having a disorder in which EZH2-mediated n methylation plays a
part, or a t having an increased risk of developing such disorder relative to the population
at large. A “subject” includes a mammal. The mammal can be e.g. a human or appropriate non-
human mammal, such as primate, mouse, rat, dog, cat, cow, horse, goat, camel, sheep or a pig.
The subject can also be a bird or fowl. In one ment, the mammal is a human. A subject
in need thereof can be one who has been previously diagnosed or identified as having cancer or a
precancerous ion. A subject in need thereof can also be one who has (e. g., is suffering
from) an EZH2-mediated cancer or an ediated precancerous condition. atively, a
subject in need thereof can be one who has an increased risk of developing such disorder relative
to the population at large (i.e., a subject who is predisposed to developing such er relative
to the population at large). A subject in need thereof can have an EZH2-mediated precancerous
condition. A subject in need thereof can have refractory or resistant EZH2-mediated cancer (i.e.,
cancer that doesn't respond or hasn’t yet responded to treatment). The subject may be resistant at
start of treatment or may become resistant during treatment. In some embodiments, the t
in need thereof has cancer recurrence following ion on most recent therapy. In some
embodiments, the subject in need thereof received and failed all known effective therapies for
cancer treatment. In some embodiments, the subject in need thereof received at least one prior
therapy. In a preferred embodiment, the subject has an EZH2-mediated cancer or an EZH2-
mediated ous condition. For example, the EZH2-mediated cancer is lymphoma, leukemia,
ma, or rhabdomyosarcoma. Preferably, the lymphoma is non-Hodgkin’s lymphoma,
follicular lymphoma or diffilse large B-cell lymphoma. Alternatively, the leukemia is chronic
myelogenous leukemia (CML). The precancerous condition is myelodysplastic syndromes
(MDS, formerly known as preleukemia).
As used herein, “treating,” ment” or “treat” describes the management and care of a
patient for the purpose of combating a disease, condition, or disorder and includes the
administration of a rph of the present invention (e.g., Polymorph C), to alleViate the
symptoms or complications of a e, condition or disorder, or to eliminate the disease,
condition or disorder. The term “treat” can also include treatment of a cell in vitro or an animal
model.
A polymorph of the present invention may also be used to prevent a relevant disease,
condition or disorder, or used to fy suitable candidates for such purposes. As used ,
“preventing, 3, “prevent,” or “protecting against” describes reducing, ameliorating or eliminating
the onset of the symptoms or complications of such disease, condition or disorder.
Point ons of the EZH2 gene at a single amino acid residue (e. g., Y641, A677, and
A687) of EZH2 have been reported to be linked to lymphoma. More examples of EZH2 mutants
and methods of ion of mutation and methods treatment of mutation-associated disorders
are described in, e.g., US. Patent Application Publication No. US 20130040906, the entire
content of which is incorporated herein by reference in its entirety.
One d in the art may refer to general reference texts for detailed descriptions of
known techniques discussed herein or equivalent techniques. These texts include Ausubel et al.,
Current Protocols in Molecular y, John Wiley and Sons, Inc. (2005); Sambrook et al.,
Molecular Cloning, A Laboratory Manual (3rd edition), Cold Spring Harbor Press, Cold Spring
Harbor, New York (2000); Coligan et al., Current Protocols in Immunology, John Wiley &
Sons, N.Y.; Enna et al., Current Protocols in Pharmacology, John Wiley & Sons, N.Y.; Fingl et
al. The Pharmacological Basis ofTherapeutics (1975), Remington ’s Pharmaceutical es,
Mack Publishing Co., Easton, PA, 18th n (1990). These texts can, of course, also be
referred to in making or using an aspect of the invention.
All percentages and ratios used herein, unless ise indicated, are by weight (i.e.,
weight by weight or wt/wt). Other features and advantages of the t invention are apparent
from the different examples. The provided examples illustrate ent components and
methodology useful in practicing the present invention. The examples do not limit the claimed
invention. Based on the t disclosure the skilled n can identify and employ other
components and methodology useful for practicing the present invention.
EXAMPLES
X-Ray Powder Diffraction
[08l] XRPD for all samples was taken on a Rigaku leX (Target: Cu; Tube voltage: 40
kV; Tube current: 30 mA, at room temperature (about 25 0C), and at 30% relative humidity
(RH)).
Differential Scanning Calorimetry
DSC for all samples was taken on a Mettler—Toledo DSC 1/700 (Run conditions: Initial
temperature 35 CC, Final temp 325-350 c’C, Heating rate 10-30 c’C/min).
Dynamic Vapor Sorption
DVS was measured on a VTI Model SGA-100 system. Measurement method: The
relative humidity (RH) was changed in a controlled fashion, in 5% steps from 5.0% to
95.0% then back to 5.0% using the gravimetric vapor sorption system, and the weight
percentage change (wt%) of the sample at each stage was measured.
Synthesis of Compound I
02N Br
Me: ;
COOH
0methylnitr0benz0ic acid: To a stirred solution of 2-methyl
nitrobenzoic acid (100 g, 552 mmol) in conc. H2S04 (400 mL), l,3-dibromo-5,5-dimethyl-2,4-
imidazolidinedione (88 g, 308 mmol) was added in a portion wise manner at room temperature
and the reaction mixture was then d at room ature for 5 h. The reaction mixture was
poured onto ice cold water, the itated solid was filtered off, washed with water and dried
under vacuum to afford the desired compound as a solid (140 g, 98%). The isolated compound
was taken directly into the next step. 1H NMR (DMSO-dg, 400 MHz) 5 8.31 (s, 1H), 8.17 (s, 1H),
2.43 (s, 3H).
02N Br
O OMe
[085] Methyl 5-br0m0methylnitr0benz0ate: To a stirred solution of 5-bromo
methylnitrobenzoic acid (285 g, 1105 mmol) in DMF (2.8L) at room temperature was added
sodium carbonate (468 g, 4415 mmol) followed by addition of methyl iodide (626.6 g, 4415
mmol). The resulting reaction mixture was heated at 60 CC for 8 h. After completion ored
by TLC), the reaction mixture was filtered (to remove sodium carbonate) and washed with ethyl
acetate (1L X 3). The combined filtrate was washed with water (3L X 5) and the aqueous phase
was back ted with ethyl acetate (1L X 3). The ed organic layers were dried over
anhydrous sodium sulfate, filtered and trated under reduced pressure to afford the title
compound as a solid (290g, 97% yield). The isolated compound was taken ly into the next
step. 1H NMR(CDC13, 400 MHz) 8 8.17 (s, 1H), 7.91 (s, 1H), 3.96 (s, 3H), 2.59 (s, 3H).
H2N Br
O OMe
Methyl 3-amin0bromo-Z-methylbenzoate : To a stirred solution of methyl 5-bromo-
2-methylnitrobenzoate (290 g, 1058 mmol) in ethanol (1 .5L) was added aqueous ammonium
chloride (283 g, 5290 mmol dissolved in 1.5L water). The resulting mixture was stirred at 80°C
to which iron powder (472 g, 8451 mmol) was added in a portion wise manner. The ing
reaction mixture was heated at 80 CC for 12 h. Upon completion as determined by TLC, the
reaction mixture was hot filtered over celite® and the celite bed was washed with methanol (5L)
followed by washing with 30% MeOH in DCM (5L). The combined e was concentrated
in-vacuo, the residue obtained was diluted with aqueous sodium onate solution (2L) and
extracted with ethyl acetate (5L X 3). The combined organic layers were dried over anhydrous
sodium sulfate, filtered and concentrated under reduced re to afford the title compound as
a solid (220 g, 85%). The compound was taken directly into the next step. 1H NMR (CDClg, 400
MHz) 8 7.37 (s, 1H), 6.92 (s, 1H), 3.94 (s, 3H), 3.80 (bs, 2H), 2.31 (s, 3H).
H2N Br CFO
NaBH(OAc)3 ONO
O OMe
[087] Methyl 5-br0m0methyl((tetrahydro-ZH-pyranyl) amino) benzoate : A
reactor was charged with methyl 3-aminobromomethylbenzoate (455.8 g, 1.87 mol), 1,2-
Dichloroethane (4.56 L), and acetic acid (535 ml, 9.34 mol). To the mixture were added
o-2H-pyran-4(3H)-one (280 g, 2.80 mol) and sodium triacetoxyborohydride (594 g, 2.80
mol) maintaining the internal temperature below 40 0C. The e was stirred at 25 0C for 2.5
h and then the reaction was quenched with a solution of sodium hydroxide (448 g, 11.20 mol) in
water (5.61 L). After stirring for 20 minutes at ambient temperature, the organic layer was
separated and the aqueous layer was ted with ethyl acetate (3.65 L). The organic layers
were combined, washed with brine (1.5 L), and concentrated under vacuum.
The e was treated with ethyl acetate (1.8 L) and heated to 65-70 0C. The mixture
was stirred at 65-70 0C for 15 minutes to give a clear solution and then treated with n-heptane
(7.3 L) maintaining the temperature between 60-70 0C. Once the heptane was completely added
to the solution, the mixture was held at 65-70 0C for 15 minutes and then allowed to cool to 18-
22 0C over 3 h. The resulting sion was stirred at 18-22 0C for 4 h, cooled to 0-5 0C over 1
h, and held at 0-5 0C for 2 h. The precipitate was d, washed twice with n-heptane (1.4 L),
and dried under vacuum to give the title compound (540 g, 88%).
N Br CH3CHO
NaBH(OAc)3
O OMe
Methyl 5-br0m0(ethyl (tetrahydro-ZH-pyranyl) amino)—2-methylbenzoate : To
a d solution of methyl 5-bromomethyl((tetrahydro-2H-pyranyl) amino) benzoate
(14 g, 42.7 mmol) in dichloroethane (150 mL) was added acetaldehyde (3.75 g, 85.2 mmol) and
acetic acid (15.3 g, 256 mmol). The resulting reaction mixture was stirred at room temperature
for 15 minutes. The mixture was cooled to 0 oC and sodium triacetoxyborohydride (27 g, 128
mmol) was added. The reaction mixture was stirred at room temperature for 3 hours. Upon
completion of the reaction as determined by TLC, aqueous sodium bicarbonate solution was
added to the reaction mixture until a pH 7-8 was obtained, the organic phase was separated and
the aqueous phase was extracted with ethyl acetate. The combined organic layers were dried
over anhydrous sodium e, filtered and trated under d pressure. The crude
compound was purified by column chromatography (100-200 mesh silica gel) g with ethyl
acetate: hexane to afford the desired nd as a Viscous liquid (14 g, 93%). 1H NMR
(DMSO-dg, 400 MHz) 5 7.62 (s, 1H), 7.52 (s, 1H), 3.80 (bs, 5H), 3.31 (t, 2H), 2.97-3.05 (m, 2H),
2.87-2.96 (m, 1H), 2.38 (s, 3H), 1.52-1.61 (m, 2H), 1.37-1.50 (m, 2H), 0.87 (t, 3H, J=6.8 Hz).
OB (J O Me
Me O
MeMe
Pd(PPh3)4 fit O [Q
0 o
GEO O OMe
Methyl 5-(ethyl(tetrahydro-2H-pyranyl)amin0)methyl-4’-(m0rpholin0methyl)-
[1,1’-biphenyl]carb0xylate : A mixture of methyl 5-bromo(ethyl(tetrahydro-2H-pyran
yl)amino)methylbenzoate (580 g, 1.63 mol), 4-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan
yl)benzyl)morpholine (592 g, 1.95 mol), 1,4-dioxane (3.86 L), sodium carbonate (618 g, 5.83
mol), and water (771 ml) was degassed by bubbling nitrogen through the mixture at 20 0C for 20
minutes and treated with tetrakis(triphenylphosphine)palladium(0) (14.11 g, 12.21 mmol). The
resulting mixture was degassed for an additional 20 minutes and then heated to 87-89 0C for 17
h. After cooling to 20 0C, the mixture was diluted with ethyl acetate (5.80 L) and a on of
(R)Aminomercaptopropionic acid (232 g) in water (2.320 L). After stirring for 1 h at 20
0C, the c layer was separated and washed again with a solution of (R)Amino
mercaptopropionic acid (232 g) in water (2.320 L). The aqueous layers were combined and
extracted with ethyl acetate (5.80 L). The organic layers were combined, washed with a solution
of sodium ide (93 g) in water (2.32 L), and concentrated under vacuum at 35 0C to give
the title nd as an orange oil (1.21 kg, 164% yield).
Et N
0/500 3NNaOH ,{l O (1)
EtOH
00/ O
Me 0 OH
5-(Ethyl(tetrahydr0-2H-pyranyl)amin0)methyl-4’-(m0rpholin0methyl)-[1,1 ’-
biphenyl]carb0xylic acid: Methyl 5-(ethyl(tetrahydro-2H-pyranyl)amino)methyl-4’-
(morpholinomethyl)-[1,1’-biphenyl]carboxylate (69.0 g, 152.5 mmol) (based on the
theoretical yield from the previous step) was suspended in ethanol (380 mL) and treated with a
solution of sodium hydroxide (24.84 g, 621.0 mmol) in water (207 mL). The mixture was stirred
at 40°C for 18 h. After cooling to 0-5 0C, the mixture was neutralized to pH 6.5 with 1 N
hydrochloric acid (580 mL) maintaining the temperature below 25 0C. Then, the mixture was
extracted twice with a mixture of dichloromethane (690 mL) and methanol (69.0 mL). The
organic layers were combined and concentrated under vacuum to give a crude product as a
yellow solid (127g).
The crude product was dissolved in 2-methyltetrahydrofuran (656 mL) at 70 OC and then
treated with IPA (828 mL). The mixture was allowed to cool to rt over 3-4 h and then stirred
ght at rt. The precipitate was filtered, washed twice with IPA (207 mL), and dried under
vacuum to give the title compound as an off white solid (53.54 g, 80%).
o No
0 “COM 0 0
0CV 0
Me OHN O
O OH HN
N-((4,6-dimethyloxo-1,2-dihydropyridinyl)methyl)(ethyl(tetrahydro-2H-
4-yl)amino)—4-methyl-4’-(morpholinomethyl)—[1,1’-biphenyl]carboxamide
(Compound I): A mixture of yl(tetrahydro-2H-pyranyl)amino)methyl-4’-
(morpholinomethyl)-[1,l’-biphenyl]carboxylic acid (540 g, 1.23 mol) and 3-(aminomethyl)-
4,6-din1ethyl-dihydro-pyridin-2(lH)-one hydrochloride (279 g, 1.48 mol) was suspended in
DMSO (2.70 L) and treated with triethylamine (223 ml, 1.60 mol). The mixture was stirred at 25
0C for 30 min and treated with l (354 g, 1.85 mol) and HOBT hydrate (283 g, 1.85
mol). The reaction e was stirred at rt for 16 h. After addition of triethylamine (292 ml,
2.09 mol), the mixture was cooled to 15 OC, diluted with water (10.1 L) maintaining the
temperature below 30 0C, and stirred at 19-25 0C for 4 h. The resulting precipitate was filtered,
washed twice with water (2.70 L), and dried under vacuum to give a crude product (695 g, wt-wt
analysis = 78%).
For the fiarther purification of the product, recrystallization was conducted. A crude
product (20.00 g, 34.92 mmol) was suspended in a e of ethanol (190 ml) and water (10.00
ml) and heated to 75°C until a clear solution was ed. The solution was allowed to cool to
rt overnight. The precipitate was filtered, washed twice with a mixture of ethanol (30.0 ml) and
water (30.0 ml), and dried under vacuum at 35 0C to give the title compound as an off white solid
(14.0 g, 70% recovery from the crude and 90% yield based on wt-wt assay).
Preparation 0fP01ym0rph C
4-((3’-(((4,6-Dimethyloxo-1,2-dihydropyridinyl)methyl)carbamoyl)—5’-
(ethyl(tetrahydro-2H-pyranyl)amino)-4’-methyl-[1,1’-biphenyl]yl)methyl)morpholin-
4-ium chloride
CLN 0
o HN o o HN o
HN HN
I I
Me Me Me Me
A suspension of N—((4,6-dimethyloxo-1,2-dihydropyridinyl)methyl)
(ethyl(tetrahydro-2H—pyranyl)amino)methyl-4 ’ -(morpholinomethyl)-[1 , 1 ’ -biphenyl] -3 -
amide (10.0 g, 17.46 mmol) in ethanol (70.0 ml) was heated to 70 0C (bath) and treated
with cone HCl (1.455 ml, 17.46 mmol). The mixture was stirred at 70 0C for 20 min and then
treated with ethyl acetate (140.0 ml). The resulting mixture was stirred at 70 0C for 30 min and
slowly cooled to room temperature over 20 h. The resulting precipitate was filtered, washed
with ethyl acetate (20 mL) and dried over N2 purge for 20 h to give rph C (6.17 g, 63%).
Preparation 0fP01ym0rph A
4-((3’-(((4,6-Dimethyl0x0-1,2-dihydr0pyridinyl)methyl)carbam0yl)—5’-
(ethyl(tetrahydr0-2H-pyranyl)amin0)-4’-methyl-[1,1’-biphenyl]yl)methyl)m0rpholin-
4-ium chloride (Polymorph A)
Mel O D MeW O @N/fi
001% O o K/o
O HN O O HN O
HN HN
I I
Me Me Me Me
A suspension of N—((4,6-dimethyloxo-1,2-dihydropyridinyl)methyl)
(ethyl(tetrahydro-2H—pyranyl)amino)methyl-4 ’ holinomethyl)-[1 , 1 ’ -biphenyl] -3 -
2014/060724
carboxamide (100 mg, 0.18 mmol) in a mixture of ethanol (0.2 mL) and water (0.1 mL) was
heated to 80 0C (bath) and treated with conc. HCl (0.29 mL, 3.49 mmol). The resulting clear
solution was treated with l (1 ml) at 80 0C (bath), and stirred at 40 0C (bath) for 30 min
and at rt for 16 h. The resulting precipitate was filtered, washed with ethanol (1 mL) and dried
over N2 purge to give a crude title compound (60 mg).
The crude HCl salt was treated with ethyl acetate (1 mL), heated to 80 OC (bath), and
treated with methanol (0.15 mL) to give a clear solution. The mixture was d at ambient
temperature for 16 h. The precipitate was filtered, washed with ethyl e, and dried over N2
purge to give the title compound of Polymorph A (54 mg, 51%).
Preparation 0fP01ym0rph B
4-((3 ’-(((4,6-Dimethyl—2-0x0-1,2-dihydr0pyridinyl)methyl)carbam0yl)—5’-
(ethyl(tetrahydr0-2H-pyranyl)amin0)-4’-methyl-[1,1’-biphenyl]yl)methyl)m0rpholin-
4-ium chloride (Polymorph B)
Mel O D MeW O @N/fi
001% O o K/o
O HN O O HN O
HN HN
I I
Me\ Me Me\ Me
[0 1 0 1 ] N—((4,6-dimethyloxo-1 ,2-dihydropyridin-3 -yl)methyl)-5 -(ethyl(tetrahydro-2H—pyran-
4-yl)amino)methyl-4’-(morpholinomethyl)-[1,1’-biphenyl]carboxamide (2.0 g, 3.49 mmol)
was suspended in a mixture of ol (2.65 mL) and ethyl acetate (2.65 mL), and heated to 60
0C (bath). The mixture was treated with conc. HCl (0.29 mL, 3.49 mmol). The resulting clear
dark solution was d with ethyl acetate (10 ml), stirred at 60 0C (bath) for 10 min, and
slowly cooled to rt over 20 h. The resulting precipitate was filtered, washed twice with ethyl
acetate (5 mL) and dried over N2 purge for 4 h to give a crude title compound (2.05 g, 96%).
Polymorph B was prepared by two methods:
a) 200 mg of the crude HCl salt was treated with acetonitrile (3 mL), heated to 70 0C (bath),
and treated with water (0.3 mL) to give a clear solution. The mixture was stirred at 70 0C
(bath) for 10 min and slowly cooled to rt over 20 h. The itate was filtered, washed
with acetonitrile, and dried under vacuum for 4 h to give the title compound of rph B
(160 mg, 80%).
b) 200 mg of the crude HCl salt was treated with acetone (3 mL), heated to 70 OC (bath), and
treated with water (0.45 mL) to give a clear solution. The mixture was stirred at 70 0C (bath)
for 10 min and slowly cooled to rt over 20 h. The precipitate was filtered, washed with
acetonitrile, and dried under vacuum for 4 h to give the title compound of Polymorph B (152
mg, 76%).
Tables
Table 1 Table 2 Table 3
P01 morhA Pol morh B Pol morh C
2-Theta 2-Theta 2-Theta
11.22 8.438 10.083
12.0 10.18 10.940
13.116 10.74 16.583
13.418 13.318 17.124
13.899 13.541 17.534
17.026 13.762 18.340
18.032 16.443 18.662
18.32 17.219 20.500
19.399 17.78 21.143
.199 18.419 21.917
21.84 20.182 22.219
22.499 20.421 23.460
23.238 20.839 26.222
24.363 21.958 26.596
24.7 23.725 27.722
24.958 24.159 30.299
.557 25.498
.879 26.863
Table 4
Polymorph P01 mo .hA P01 mo .hB P01 mo .hC
Onset temperature (°C) 190:5 °C 105:5 oC 228:5 °C nrima endotherm
Characteristics 0fP01ym0rph Farms
Three solid crystalline forms of Compound I hydrochloride were prepared and
characterized. These forms are identified herein as Polymorph A, rph B and Polymorph
C. Among them, rph C had the most ageous physicochemical properties in terms
of stability (cf. Fig. 4) and hygroscopicity (cf. Figs. 5 and 6). The formation of Polymorph C as
described herein is also advantageous in that it results in a form of Compound I HCl that is
substantially free of amorphous Compound I (or its amorphous mono- or HCl forms).
As shown in Figure 7, DSC data of Polymorph A indicates some degree of non-
crystallinity with an endotherm at 190.5°C. Also, dynamic vapor sorption (DVS) data for
Polymorph A was obtained and found to show some hygroscopicity: between 4 — 6 % weight
gain was observed at 75% relative humidity (RH) at 25°C (Figure 6).
Surprisingly, Polymorph C was found to be highly crystalline and stable (with the highest
endotherm of the three polymorphic forms discussed ; see Figure 4) and non-hygroscopic
(Figure 5).
The entire disclosure of each of the patent documents and scientific articles referred to
herein is incorporated by reference for all es.
The invention can be embodied in other specific forms t departing from the spirit
or essential characteristics thereof. The ing embodiments are therefore to be considered in
all ts illustrative rather than limiting on the invention described herein. Scope of the
invention is thus indicated by the appended claims rather than by the foregoing description, and
all changes that come within the meaning and range of equivalency of the claims are intended to
be embraced therein.
Claims (8)
1. Polymorph C of 6-dimethyloxo-1,2-dihydropyridinyl)methyl)(ethyl (tetrahydro-2H-pyranyl)amino)methyl-4’-(morpholinomethyl)-[1,1’-biphenyl] carboxamide monohydrochloride, wherein the rph ts an X-ray powder diffraction 5 pattern having two or more characteristic peaks expressed in degrees 2-theta (+/- 0.2) at 17.53, 18.66, 21.14, 22.22, 23.46, 27.72 or 30.30.
2. The polymorph according to claim 1, wherein the polymorph exhibits an X-ray powder diffraction pattern having three or more teristic peaks expressed in degrees 2-theta (+/- 10 0.2) at 17.53, 18.66, 21.14, 22.22, 23.46, 27.72 or 30.30.
3. The polymorph according to claim 1, wherein the polymorph exhibits an X-ray powder diffraction pattern having four or more characteristic peaks expressed in degrees 2-theta (+/- 0.2) at 17.53, 18.66, 21.14, 22.22, 23.46, 27.72 or 30.30.
4. The polymorph according to claim 1, wherein the polymorph ts an X-ray powder diffraction pattern having characteristic peaks expressed in degrees 2-theta (+/- 0.2) at 17.53, 21.14, 23.46, and 27.72. 20
5. The polymorph ing to claim 1, wherein the polymorph exhibits an X-ray powder diffraction pattern having at least eight characteristic peaks expressed in degrees 2-theta (+/- 0.2), selected from the group consisting of 10.08, 10.94, 16.58, 17.12, 17.53, 18.34, 18.66, 20.50, 21.14, 21.92, 22.22, 23.46, 26.22, 26.60, 27.72, and 30.30. 25
6. The polymorph according to claim 1, wherein the polymorph exhibits an X-ray powder diffraction pattern having at least nine characteristic peaks expressed in degrees 2-theta (+/- 0.2), selected from the group consisting of 10.08, 10.94, 16.58, 17.12, 17.53, 18.34, 18.66, 20.50, 21.14, 21.92, 22.22, 23.46, 26.22, 26.60, 27.72, and 30.30.
7. The rph according to claim 1, wherein the polymorph ts an X-ray powder diffraction pattern having at least ten characteristic peaks expressed in degrees 2-theta (+/- 0.2), selected from the group consisting of 10.08, 10.94, 16.58, 17.12, 17.53, 18.34, 18.66, 20.50, 21.14, 21.92, 22.22, 23.46, 26.22, 26.60, 27.72, and 30.30.
8. The polymorph of any one of the preceding claims, wherein the polymorph exhibits an X-ray powder diffraction pattern having peaks with 2-theta values substantially in accordance with
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
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US201361891786P | 2013-10-16 | 2013-10-16 | |
US61/891,786 | 2013-10-16 | ||
PCT/US2014/060724 WO2015057859A1 (en) | 2013-10-16 | 2014-10-15 | Hydrochloride salt form for ezh2 inhibition |
Publications (2)
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NZ718201A NZ718201A (en) | 2021-09-24 |
NZ718201B2 true NZ718201B2 (en) | 2022-01-06 |
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