NZ709253B2 - Chimeric antigen receptors - Google Patents

Chimeric antigen receptors Download PDF

Info

Publication number
NZ709253B2
NZ709253B2 NZ709253A NZ70925313A NZ709253B2 NZ 709253 B2 NZ709253 B2 NZ 709253B2 NZ 709253 A NZ709253 A NZ 709253A NZ 70925313 A NZ70925313 A NZ 70925313A NZ 709253 B2 NZ709253 B2 NZ 709253B2
Authority
NZ
New Zealand
Prior art keywords
domain
polypeptide
antigen
ctla4
lymphocyte
Prior art date
Application number
NZ709253A
Other versions
NZ709253A (en
Inventor
Stewart Abbot
Tianjian Li
Bitao Liang
Original Assignee
Celgene Corporation
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Celgene Corporation filed Critical Celgene Corporation
Priority to NZ749028A priority Critical patent/NZ749028B2/en
Priority claimed from PCT/US2013/076486 external-priority patent/WO2014100385A1/en
Publication of NZ709253A publication Critical patent/NZ709253A/en
Publication of NZ709253B2 publication Critical patent/NZ709253B2/en

Links

Classifications

    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P13/00Drugs for disorders of the urinary system
    • A61P13/08Drugs for disorders of the urinary system of the prostate
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • A61P35/02Antineoplastic agents specific for leukemia
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/70503Immunoglobulin superfamily
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/70503Immunoglobulin superfamily
    • C07K14/7051T-cell receptor (TcR)-CD3 complex
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/70503Immunoglobulin superfamily
    • C07K14/70521CD28, CD152
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/2803Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/30Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/30Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
    • C07K16/3061Blood cells
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/30Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
    • C07K16/3069Reproductive system, e.g. ovaria, uterus, testes, prostate
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/60Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments
    • C07K2317/62Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments comprising only variable region components
    • C07K2317/622Single chain antibody (scFv)
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/01Fusion polypeptide containing a localisation/targetting motif
    • C07K2319/03Fusion polypeptide containing a localisation/targetting motif containing a transmembrane segment
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/33Fusion polypeptide fusions for targeting to specific cell types, e.g. tissue specific targeting, targeting of a bacterial subspecies

Abstract

Provided herein are therapeutic polypeptides, e.g., chimeric antigen receptors, able to direct an immune cell, e.g., a T lymphocyte to a target antigen, and able to cause the T cell to proliferate or to kill cells displaying the antigen when the antigen binds to the polypeptide, wherein the polypeptides comprise a transmembrane domain from a T cell co-inhibitory protein such as CTLA4 or PD-1. Also provided herein are T lymphocytes expressing the polypeptides, and use of such T lymphocytes to treat diseases such as cancer. ides comprise a transmembrane domain from a T cell co-inhibitory protein such as CTLA4 or PD-1. Also provided herein are T lymphocytes expressing the polypeptides, and use of such T lymphocytes to treat diseases such as cancer.

Description

CHIMERIC ANTIGEN RECEPTORS This application claims priority to US. Provisional Patent Application No. 61/740,113, filed December 20, 2012, and US. Provisional Patent Application No. 61/779,925, filed March 13, 2013, each of which is incorporated herein by reference in its entirety. 1. FIELD The disclosure herein relates to the field of logy, and more specifically, to the modification of T lymphocytes or other immune cells. 2. BACKGROUND Cells of the immune system such as T lymphocytes (also referred to as T cells) recognize and interact with specific antigens through receptors or receptor complexes which, upon ition or an interaction with such antigens, cause tion of the cell. An example of such a receptor is the antigen-specific T lymphocyte receptor complex (TCIVCD3), a complex of eight proteins. The T cell receptor (TCR) is expressed on the surface of T lymphocytes. One component, CD3, which has an ant structure, is responsible for intracellular signaling following occupancy of the TCR by ligand. The T lymphocyte receptor for antigen-CD3 complex (TCIVCD3) recognizes antigenic peptides that are presented to it by the proteins of the major histocompatibility complex (MHC). Complexes ofMHC and peptide are expressed on the surface of antigen presenting cells and other T lymphocyte targets. Stimulation of the TCIVCD3 complex results in activation of the T lymphocyte and a consequent antigen-specific immune response. The TCIVCD3 complex plays a l role in the effector fianction and regulation of the immune system.
T lymphocytes require a second, co-stimulatory signal to become fully active. Without such a , T lymphocytes are either non-responsive to antigen binding to the TCR, or become anergic. Such a co-stimulatory signal, for example, is provided by CD28, a T lymphocyte protein, which interacts with CD80 and CD86 on antigen-producing cells. ICOS ible COStimulator), another T cyte n, provides a mulatory signal when bound to ICOS ligand. CTLA4 (cytotoxic T-Lymphocyte Antigen 4), also known as CD152, is a receptor expressed on the e of helper T cells and CD4+ T cells, that downregulates T cell activity.
Binding of CTLA4 to its e ligands, CD80 and CD86, results in reduced T cell activation and proliferation. PD-1 ammed Cell Death-1), also known as CD279, is currently understood to negatively regulate T Cell Receptor (TCR) signals, and to broadly negatively regulate immune responses.
The essential antigen-binding, signaling, and stimulatory fianctions of the TCR complex have been reduced by genetic recombination methods to a single polypeptide chain, lly referred to as a Chimeric Antigen Receptor (CAR). See, e. g., Eshhar, US. Patent No. 7,741,465; Eshhar, US. Patent Application Publication No. 2012/0093 842. T lymphocytes bearing such CARs are generally referred to as CAR-T lymphocytes. CARs are constructed specifically to ate T cell activation and proliferation in response to a specific antigen to which the CAR binds. 3. SUMMARY In one aspect, provided herein are polypeptides, e.g., chimeric n receptors (see, e.g., Eshhar, US. Patent No. 7,741,465), that can be expressed by immune system cells, e.g., T lymphocytes (T , are membrane-bound in such immune system cells, and which comprise a transmembrane domain from an immune system n that normally transmits an inhibitory signal to such immune system cells, e. g., a transmembrane domain from CTLA4 (Cytotoxic T- Lymphocyte Antigen 4 or Cytotoxic T-Lymphocyte Associated protein 4) or PD-l (Programmed Cell Death-1).
In one embodiment, provided herein is a polypeptide comprising (i) a transmembrane domain comprising the transmembrane domain from CTLA4 (e.g., GenBank Accession No.
NM_005214.4 (CTLA4 cytotoxic T-lymphocyte-associated protein 4 (Homo sapiens); Gene ID: 1493)) or PD-l (e.g., GenBank Accession No. 018.2 (programmed cell death 1 (Homo sapiens ); Gene ID: 5133)), or a portion thereof, (ii) an intracellular domain (e. g., cytoplasmic ) of an endogenous protein expressed on the surface of lymphocytes that triggers the activation and/or proliferation of said lymphocytes, and (iii) an extracellular domain that binds to an antigen of interest, wherein if the transmembrane domain is from CTLA4, the intracellular domain and extracellular domain of said polypeptide are not from CTLA4; and if the transmembrane domain is from PD-l, the ellular domain and extracellular domain of said polypeptide are not from PD-l. In a specific embodiment, the polypeptide is a chimeric antigen receptor (CAR). In a ic embodiment, a T cyte sing said polypeptide, or any of such polypeptides described herein, is activated or stimulated to proliferate when said polypeptide binds to said antigen. In a specific ment, the polypeptide, when expressed on the surface of a T lymphocyte, s the T lymphocyte to kill a cell expressing said antigen.
In a specific embodiment, provided herein is a polypeptide comprising a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is the polypeptide sequence encoded by exon 3 of a human ctla4 gene (e. g., k Accession No. NM_005214.4 (CTLA4 cytotoxic T-lymphocyte-associated protein 4 (Homo sapiens); Gene ID: 1493)).
In another specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence PEPCPDSDFLLWILAAVSSGLFFYSFLLTAVSLSKM (in three-letter code, u-Pro-Cys- Pro-Asp-Ser-Asp-Phe-Leu-Leu-Trp-Ile-Leu-Ala-Ala-Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser- Phe-Leu-Leu-Thr-Ala-Val-Ser-Leu-Ser-Lys-Met) (SEQ ID NO:1).
In another specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the polypeptide sequence encoded by nucleotides 610-722 of GenBank Accession No. NM_005214.4 (CTLA4 cytotoxic T-lymphocyte-associated protein 4 (Homo sapiens); Gene ID: 1493).
In another specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence PDSDFLLWILAAVSSGLFFYSFLLTAVSL (in three-letter code, Pro-Asp-Ser-Asp-Phe-Leu- Leu-Trp-Ile-Leu-Ala-Ala-Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser-Phe-Leu-Leu-Thr-Ala-Val- Ser-Leu) (SEQ ID NO:2).
In another specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the polypeptide sequence encoded by nucleotides 636-699 of GenBank Accession No. NM_005214.4 (CTLA4 cytotoxic hocyte-associated protein 4 (Homo sapiens); Gene ID: 1493).
In another specific ment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the amino acid ce FLLWILAAVSSGLFFYSFLLTAV (in three-letter code, Phe-Leu-Leu-Trp-Ile-Leu-Ala-Ala-Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser- u-Leu-Thr-Ala-Val) (SEQ ID NO:3).
In another c embodiment, the CTLA4 transmembrane domain of a ptide provided herein is or comprises the polypeptide sequence FLLWILAAVSSGLFFYSFLLT (in three-letter code, Phe-Leu-Leu-Trp-Ile-Leu-Ala-Ala-Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser- u-Leu-Thr) (SEQ ID NO:4).
In another specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the polypeptide ce VAVSLGLFFYSFLVSAVSLS (in three-letter code, Phe-Leu-Leu-Trp-Ile-Leu-Val- Ala-Val-Ser-Leu-Gly-Leu-Phe-Phe-Tyr-Ser-Phe-Leu-Val-Ser-Ala-Val-Ser-Leu-Ser) (SEQ ID NO:5).
In another specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the polypeptide sequence LGIGNGTQIYVIDPEPSPDSDFLLWILAAVSSGLFFYSFLLTAVSLSKM (in three-letter code, Leu Gly Ile Gly Asn Gly Thr Gln Ile Tyr Val Ile Asp Pro Glu Pro Ser Pro Asp Ser Asp Phe Leu Leu Trp Ile Leu Ala Ala Val Ser Ser Gly Leu Phe Phe Tyr Ser Phe Leu Leu Thr Ala Val Ser Leu Ser Lys Met) (SEQ ID NO:9).
In another specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the polypeptide sequence AAVSSGLFFYSFLLTAVSLSKM (in letter code, Phe Leu Leu Trp Ile Leu Ala Ala Val Ser Ser Gly Leu Phe Phe Tyr Ser Phe Leu Leu Thr Ala Val Ser Leu Ser Lys Met) (SEQ ID NO: 10).
In another c embodiment, the PD-l transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence TLVVGVVGGLLGSLVLLVWVLAVICSRAA (in three-letter code, Thr-Leu-Val-Val-Gly-Val- Val-Gly-Gly-Leu-Leu-Gly-Ser-Leu-Val-Leu-Leu-Val-Trp-Val-Leu-Ala-Val-Ile-Cys-Ser-Arg- Ala-Ala) (SEQ ID NO:6).
In another specific embodiment, the PD-l transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence VGVVGGLLGSLVLLVWVLAVI (in three-letter code, Val-Gly-Val-Val-Gly-Gly-Leu-Leu-Gly-Ser-Leu-Val-Leu-Leu-Val-Trp-Val- Leu-Ala-Val-Ile) (SEQ ID NO:7).
In another specific embodiment, the PD-l transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence FQTLVVGVVGGLLGSLVLLVWVLAVI (in three-letter code, Phe-Glu-Thr-Leu-Val-Val-Gly- Val-Val-Gly-Gly-Leu-Leu-Gly-Ser-Leu-Val-Leu-Leu-Val-Trp-Val-Leu-Ala-Val-Ile) (SEQ ID NO:8).
In another specific embodiment, the PD-l transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence FQTLVVGVVGGLLGSLVLLVWVLAVICSRAA (in three-letter code, Phe Gln Thr Leu Val Val Gly Val Val Gly Gly Leu Leu Gly Ser Leu Val Leu Leu Val Trp Val Leu Ala Val Ile Cys Ser Arg Ala Ala) (SEQ ID NO:11).
As exemplified by the CTLA-4 and PD-1 transmembrane domain ces described herein (i.e., SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, and SEQ ID NO:11), the transmembrane domains described herein, in certain embodiments, se one or more amino acids from the extracellular domain and/or one or more amino acids from the intracellular domain of the protein from which they are derived (i.e., CTLA-4 or PD-l). In certain ments, the transmembrane domains described herein comprise 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 amino acids from the extracellular domain of the protein from which they are d (i.e., CTLA-4 or PD-l). In certain embodiments, the embrane domains described herein comprise 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 amino acids from the intracellular domain of the protein from which they are derived (i.e., CTLA-4 or PD-l). In certain embodiments, the transmembrane domains described herein comprise (i) 1, 2, 3, 4, 5, 6, 7, 8, 9, , 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 amino acids from the extracellular domain of the protein from which they are derived (i.e., CTLA-4 or PD-l) and (ii) 1, 2, 3, 4, 5, 6, 7, 8, 9,10,11,12,13,14,15,16,17,18,19, 20, 21, 22, 23, 24, or 25 amino acids from the intracellular domain of the protein from which they are derived (i.e., CTLA-4 or PD-l).
In another specific embodiment, provided herein is a polypeptide that ses a transmembrane domain, wherein the transmembrane domain is or comprises at least 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or 21 consecutive amino acids disclosed in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NOill. In another specific ment, provided herein is a polypeptide that comprises a transmembrane , wherein the transmembrane domain is at least 75%, at least 80%, at least 85%, at least 90%, or at least 95%, identical to SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:11. In another specific embodiment, the polypeptides provided herein comprise 1, 2, 3, 4, or 5 amino mutations, e.g., conservative amino acid mutations (e.g., hydrophobic amino acid mutated to a different hobic amino acid), in the transmembrane domain of the polypeptide.
In certain embodiments, provided herein is a nucleotide sequence that encodes one of the polypeptides disclosed . In a specific embodiment, provided herein is a tide sequence that comprises a nucleotide sequence that encodes any of the amino acid sequences disclosed in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:11. In another specific embodiment, ed herein is a nucleic acid that encodes a polypeptide described herein, wherein the nucleic acid ses a nucleotide sequence that encodes at least , 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or 21 consecutive amino acids disclosed in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:11. In another specific embodiment, provided herein is a nucleic acid sequence that encodes a polypeptide that is at least 75%, at least 80%, at least 85%, at least 90%, or at least 95%, identical to SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:11.
In certain embodiments, the extracellular domain of any of the polypeptides described herein comprises a receptor, or a portion of a receptor, that binds to an antigen. The extracellular domain may be, e.g., a receptor, or a portion of a receptor, that binds to said antigen. In certain ments, the ellular domain comprises, or is, an dy or an antigen-binding portion thereof. In a specific embodiment, the extracellular domain ses, or is, a single- chain Fv domain. The -chain Fv domain can comprise, for example, a VL linked to VH by a flexible linker, n said VL and VH are from an antibody that binds said antigen.
The antigen to which the extracellular domain of the polypeptide binds can be any antigen of interest, e. g., an antigen on a tumor cell. The tumor cell may be, e.g., a cell in a solid tumor, or a cell of lid tumor, e. g., a cell of a blood cancer. In certain embodiments, the antigen is a tumor-associated antigen or a tumor-specific antigen. In a specific embodiment, the tumor-associated antigen or tumor-specific antigen is, without limitation, Her2, prostate stem cell antigen (PSCA), alpha-fetoprotein (AFP), carcinoembryonic antigen (CEA), cancer antigen-125 (CA-125), CA19-9, calretinin, MUC-l, epithelial membrane protein (EMA), epithelial tumor n (ETA), tyrosinase, melanoma-associated antigen (MAGE), CD34, CD45, CD99, CD117, chromogranin, cytokeratin, , glial lary acidic protein (GFAP), gross cystic disease fluid protein (GCDFP-lS), HMB-45 antigen, protein melan-A (melanoma antigen recognized by T lymphocytes; MART-1), myo-D1, muscle-specific actin (MSA), neurofilament, neuron- specific enolase (NSE), placental alkaline phosphatase, ophysis, thyroglobulin, thyroid transcription factor-1, the dimeric form of the pyruvate kinase isoenzyme type M2 (tumor M2- PK), CD19, CD22, CD27, CD30, CD70, GD2 (ganglioside G2), EGFRvIII rmal growth factor variant III), sperm protein 17 (Spl7), mesothelin, PAP (prostatic acid phosphatase), prostein, TARP (T cell receptor gamma alternate reading frame protein), Trp-p8, STEAPl (six- transmembrane epithelial antigen of the te 1), an abnormal ras protein, or an abnormal p53 protein. In another specific embodiment, said tumor-associated antigen or tumor-specific antigen is integrin (va3 (CD61), galactin, K-Ras (V-Ki-ras2 Kirsten rat sarcoma viral oncogene), or Ral-B.
In certain embodiments, the extracellular domain of the polypeptides bed herein is joined to the transmembrane domain of the polypeptide by a , spacer or hinge polypeptide/peptide sequence, e. g., a CH2CH3 hinge sequence or a sequence from CD8, CD28, CTLA4, or PD-1.
In n embodiments, the intracellular domain of the polypeptides described herein is or comprises an ellular domain of a protein that is expressed on the surface of T cells and triggers activation and/or proliferation of said T cells. In a specific embodiment, the intracellular domain is a CD35; ellular signaling domain. In another specific embodiment, the intracellular domain is from a lymphocyte receptor chain, a TCIVCD3 complex protein, an Fc receptor subunit, or an IL-2 receptor subunit.
In certain embodiments, the polypeptides provided herein additionally se one or more co-stimulatory s, e.g., as part of the intracellular domain of the polypeptide. The one or more co-stimulatory domains can be, or can comprise, Without limitation, one or more of a co-stimulatory CD27 polypeptide sequence, a co-stimulatory CD28 polypeptide sequence, a co-stimulatory 0X40 (CD134) polypeptide ce, a co-stimulatory 4-1BB (CD137) polypeptide sequence, or, a co-stimulatory inducible T-cell costimulatory (ICOS) polypeptide In a specific embodiment, a polypeptide ed herein ses, in order, from N- terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen binding domain that binds an n on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CD28 or CTLA4 hinge polypeptide sequence; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a costimulatory domain; and (V) an intracellular signaling domain. In a specific embodiment, the antigen-binding domain of the polypeptide binds to CD19.
In another specific ment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen binding domain that binds an antigen on a tumor cell, e. g., an antigen on a tumor cell described above); (ii) a CH2CH3 hinge polypeptide sequence; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen binding domain that binds an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CD28 hinge polypeptide ce; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a 4-lBB costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain sing a VL linked to VH by a , wherein said VL and VH are from an antibody that binds an n of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CD28 hinge polypeptide sequence; (iii) a CTLA4 transmembrane domain; (iv) a CD28 ulatory domain; and (v) a CD35; ellular signaling domain.
In another specific embodiment, a polypeptide ed herein ses, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CTLA4 hinge ptide sequence; (iii) a CTLA4 transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein ses, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an n of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CD28 hinge polypeptide sequence; (iii) a PD-l transmembrane domain; (iv) a CD28 costimulatory domain; and (V) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an n of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CTLA4 hinge polypeptide sequence; (iii) a PD-l transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen binding domain that binds an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a PD-l hinge polypeptide sequence; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a costimulatory ; and (v) an intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein ses, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a PD-l hinge polypeptide sequence; (iii) a CTLA4 embrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; ellular ing domain.
In another specific embodiment, a polypeptide provided herein ses, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, n said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a PD-l hinge ptide sequence; (iii) a PD-l transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another aspect, provided herein are T cytes, e. g., T cells, that comprise, e.g., express on their cell surface, a membrane-bound polypeptide, wherein said polypeptide comprises (i) a transmembrane domain comprising the transmembrane domain from CTLA4 or PD-l, or a portion thereof, (ii) an intracellular domain of an endogenous protein expressed on the surface of lymphocytes and that rs the activation and/or proliferation of said lymphocytes, and (iii) an extracellular domain that binds to an antigen of st, wherein if the transmembrane domain is from CTLA4, the intracellular domain and extracellular domain nally excluding a CTLA4 linker) of said ptide are not from CTLA4; and if the embrane domain is from PD-l, the intracellular domain and extracellular domain of said polypeptide are not from PD-l. In a specific embodiment, the ptide is a chimeric antigen receptor (CAR).
In a specific embodiment, provided herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is the polypeptide sequence encoded by exon 3 of a human CTLA4 gene (e.g., GenBank Accession No. NM_005214.4 (CTLA4 cytotoxic T-lymphocyte-associated protein 4 (Homo sapiens); Gene ID: 1493)).
In r specific embodiment, ed herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is or comprises the amino acid ce PEPCPDSDFLLWILAAVSSGLFFYSFLLTAVSLSKM (in three-letter code, Pro-Glu-Pro-Cys- Pro-Asp-Ser-Asp-Phe-Leu-Leu-Trp-Ile-Leu-Ala-Ala-Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser- Phe-Leu-Leu-Thr-Ala-Val-Ser-Leu-Ser-Lys-Met) (SEQ ID N021).
In another specific embodiment, provided herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is or comprises the polypeptide sequence encoded by nucleotides 610- 722 of GenBank Accession No. NM_005214.4 (CTLA4 cytotoxic T-lymphocyte-associated n 4 (Homo sapiens); Gene ID: 1493).
In r specific embodiment, provided herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is or comprises the amino acid sequence PDSDFLLWILAAVSSGLFFYSFLLTAVSL (in three-letter code, Pro-Asp-Ser-Asp-Phe-Leu- Leu-Trp-Ile-Leu-Ala-Ala-Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser—Phe-Leu-Leu-Thr-Ala-Val- Ser-Leu) (SEQ ID N02). 2013/076486 In another specific embodiment, provided herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is or comprises the polypeptide sequence encoded by nucleotides 63 6- 699 of GenBank Accession No. NM_005214.4 (CTLA4 cytotoxic T-lymphocyte-associated n 4 (Homo s); Gene ID: 1493).
In another specific embodiment, provided herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from CTLA4, n the CTLA4 transmembrane domain is or comprises the amino acid sequence FLLWILAAVSSGLFFYSFLLTAV (in three-letter code, Phe-Leu-Leu-Trp-Ile-Leu-Ala-Ala- Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser-Phe-Leu-Leu-Thr-Ala-Val) (SEQ ID N03).
In r specific embodiment, provided herein is a T lymphocyte comprising a polypeptide that ses a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is or comprises the polypeptide sequence FLLWILAAVSSGLFFYSFLLT (in three-letter code, Phe-Leu-Leu-Trp-Ile-Leu-Ala-Ala-Val- Ser-Ser-Gly-Leu-Phe-Phe-Tyr—Ser-Phe-Leu-Leu-Thr) (SEQ ID NO:4).
In another specific embodiment, ed herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is or comprises the polypeptide sequence FLLWILVAVSLGLFFYSFLVSAVSLS (in three-letter code, u-Leu-Trp-Ile-Leu-Val- Ala-Val-Ser-Leu-Gly-Leu-Phe-Phe-Tyr-Ser-Phe-Leu-Val-Ser-Ala-Val-Ser-Leu-Ser) (SEQ ID NO:5).
In another specific embodiment, provided herein is a T lymphocyte comprising a polypeptide that ses a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is or comprises the polypeptide sequence LGIGNGTQIYVIDPEPSPDSDFLLWILAAVSSGLFFYSFLLTAVSLSKM (in three-letter code, Leu Gly Ile Gly Asn Gly Thr Gln Ile Tyr Val Ile Asp Pro Glu Pro Ser Pro Asp Ser Asp Phe Leu Leu Trp Ile Leu Ala Ala Val Ser Ser Gly Leu Phe Phe Tyr Ser Phe Leu Leu Thr Ala Val Ser Leu Ser Lys Met) (SEQ ID NO:9).
In another specific embodiment, provided herein is a T lymphocyte comprising a polypeptide that ses a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is or comprises the polypeptide sequence FLLWILAAVSSGLFFYSFLLTAVSLSKM (in letter code, Phe Leu Leu Trp Ile Leu Ala Ala Val Ser Ser Gly Leu Phe Phe Tyr Ser Phe Leu Leu Thr Ala Val Ser Leu Ser Lys Met) (SEQ ID NO: 10).
In another c embodiment, provided herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from PD-l, wherein the PD-l transmembrane domain is or comprises the amino acid sequence TLVVGVVGGLLGSLVLLVWVLAVICSRAA (in three-letter code, Thr-Leu-Val-Val-Gly-Val- y-Gly-Leu-Leu-Gly-Ser-Leu-Val-Leu-Leu-Val-Trp-Val-Leu-Ala-Val-Ile-Cys-Ser-Arg- a) (SEQ ID NO:6).
In another specific embodiment, provided herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from PD-l, wherein the PD-l transmembrane domain is or comprises the amino acid sequence VGVVGGLLGSLVLLVWVLAVI (in three-letter code, y-Val-Val-Gly-Gly-Leu-Leu- Gly-Ser-Leu-Val-Leu-Leu-Val-Trp-Val-Leu-Ala-Val-Ile) (SEQ ID NO:7).
In another c embodiment, provided herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from PD-l, wherein the PD-l transmembrane domain is or comprises the amino acid sequence FQTLVVGVVGGLLGSLVLLVWVLAVI (in three-letter code, Phe-Glu-Thr-Leu-Val-Val-Gly- Val-Val-Gly-Gly-Leu-Leu-Gly-Ser-Leu-Val-Leu-Leu-Val-Trp-Val-Leu-Ala-Val-Ile) (SEQ ID NO:8).
In another specific ment, provided herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain from PD-l, wherein the PD-l transmembrane domain is or comprises the amino acid sequence FQTLVVGVVGGLLGSLVLLVWVLAVICSRAA (in three-letter code, Phe Gln Thr Leu Val Val Gly Val Val Gly Gly Leu Leu Gly Ser Leu Val Leu Leu Val Trp Val Leu Ala Val Ile Cys Ser Arg Ala Ala) (SEQ ID NO: 1 l).
In certain embodiments, a nucleotide sequence expressed or encoded by a T lymphocyte provided herein (i.e., a T lymphocyte comprising a polypeptide described ) comprises a tide sequence that encodes any of the amino acid sequences disclosed in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:lO, or SEQ ID NO:ll.
In another specific embodiment, provided herein is a T lymphocyte comprising a polypeptide that comprises a transmembrane domain, n the transmembrane domain is or comprises at least 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or 21 consecutive amino acids sed in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:ll. In certain embodiments, provided herein is a T lymphocyte comprising a nucleic acid that encodes a polypeptide bed herein, wherein the nucleic acid ses a tide sequence that encodes at least 10, ll, 12, l3, 14, 15, l6, l7, 18, 19,20 or 21 consecutive amino acids disclosed in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:ll.
In n embodiments, the extracellular domain of a polypeptide expressed by the T lymphocytes provided herein comprises a receptor, or a portion of a receptor, that binds to an n of interest. The extracellular domain may be, e.g., a receptor, or a portion of a receptor, that binds to said antigen. In certain embodiments, the extracellular domain ses, or is, an antibody or an antigen-binding portion thereof. In specific embodiments, the extracellular domain comprises, or is, a single-chain Fv domain. The -chain Fv domain can se, for example, a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen.
The antigen to which the extracellular domain of the polypeptide expressed by a T lymphocyte provided herein binds, and therefore to which the T cell is directed by the polypeptide, can be any antigen of interest, e.g., an antigen on a tumor cell. The tumor cell may be, e.g., a cell in a solid tumor, or a cell of a non-solid tumor, e.g., a cell of a blood cancer. In certain embodiments, the antigen is a tumor-associated antigen or a tumor-specific antigen. In certain embodiments, the antigen is one or more of Kappa, Lambda, CD19, CD22, CD27, CD30, CD70, GD2, HER2, CEA, EGFRvIII, Sperm Protein17, PSCA, mesothelin, PAP (prostatic acid phosphatase), prostein, TARP (T cell receptor gamma alternate reading frame n), Trp-p8, STEAP1 (six-transmembrane epithelial antigen of the prostate 1), and/or MUC-l. In various specific embodiments, without limitation, the tumor-associated antigen or tumor-specific antigen is Her2, te stem cell antigen (PSCA), alpha-fetoprotein (AFP), carcinoembryonic antigen (CEA), cancer antigen-125 (CA-125), CA19-9, calretinin, MUC-l, epithelial membrane protein (EMA), lial tumor antigen (ETA), nase, melanoma-associated antigen (MAGE), CD34, CD45, CD99, CD117, chromogranin, cytokeratin, desmin, glial fibrillary acidic protein , gross cystic disease fluid protein (GCDFP-15), HMB-45 antigen, protein melan-A (melanoma antigen ized by T lymphocytes; MART-1), myo-D1, muscle-specific actin (MSA), neurofilament, neuron-specific enolase (NSE), placental alkaline phosphatase, synaptophysis, thyroglobulin, thyroid transcription factor-1, the dimeric form of the pyruvate kinase isoenzyme type M2 (tumor M2-PK), an abnormal ras protein, or an abnormal p53 protein.
In another specific embodiment, said associated antigen or tumor-specific antigen is integrin (va3 (CD61), galactin, K-Ras ras2 Kirsten rat sarcoma viral ne), or Ral-B.
In certain embodiments, the extracellular domain of a polypeptide expressed by a T lymphocyte bed herein is joined to said transmembrane domain of the polypeptide by a linker, spacer or hinge polypeptide sequence, e.g., a sequence from CD8, CD28, CTLA4 or PD-1.
In certain embodiments, the ellular domain of a polypeptide expressed by a T lymphocyte described herein is or comprises an ellular domain of a protein that is normally expressed on the surface of T cells and which triggers activation and/or eration of said T cells. In a specific embodiment, the intracellular domain is a CD35; intracellular signaling domain. In another embodiment, the intracellular domain is from a lymphocyte receptor chain, a TCIVCD3 complex protein, an Fc receptor subunit or an IL-2 receptor subunit.
In certain embodiments, a polypeptide expressed by a T lymphocyte described herein additionally comprises one or more co-stimulatory s, e.g., as part of the intracellular domain of the polypeptide. The one or more co-stimulatory domains can be, or comprise, one or more of a co-stimulatory CD27 polypeptide sequence, a mulatory CD28 ptide sequence, a co-stimulatory 0X40 (CD134) polypeptide ce, a co-stimulatory 4-1BB (CD137) polypeptide sequence, or a co-stimulatory inducible T-cell costimulatory (ICOS) polypeptide ce.
In a specific embodiment, the T lymphocytes provided herein express or comprise a polypeptide that comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen binding domain that binds an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CD28 or CTLA4 hinge polypeptide sequence; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a costimulatory domain; and (v) an intracellular signaling domain. In a c embodiment, the antigen-binding domain of the polypeptide binds to CD19.
In a specific embodiment, the T lymphocytes provided herein express or comprise a polypeptide that comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen g domain that binds an antigen on a tumor cell, e.g., an antigen on a tumor cell bed above); (ii) a CH2CH3 hinge polypeptide sequence; (iii) a CTLA4 or PD- 1 transmembrane domain; (iv) a CD28 ulatory domain; and (V) a CD35; intracellular signaling domain. In a specific ment, the antigen-binding domain of the polypeptide binds to HER2.
In a specific embodiment, the T lymphocytes ed herein express or comprise a polypeptide that comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen binding domain that binds an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CH2CH3 hinge polypeptide sequence; (iii) a CTLA4 or PD- 1 transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; ellular signaling domain. In a specific embodiment, the antigen-binding domain of the polypeptide binds to HER2.
In another c embodiment, the T lymphocytes provided herein express or comprise a polypeptide that comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CD28 hinge polypeptide sequence; (iii) a CTLA4 transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, the T lymphocytes provided herein express or comprise a polypeptide that comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, n said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described ; (ii) a CTLA4 hinge polypeptide ce; (iii) a CTLA4 embrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, the T lymphocytes provided herein express or comprise a polypeptide that comprises, in order, from N—terminus to inus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, n said VL and VH are from an antibody that binds an antigen of st (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell 2013/076486 described above); (ii) a CD28 hinge polypeptide sequence; (iii) a PD-l transmembrane domain; (iv) a CD28 costimulatory domain; and (V) a CD35; intracellular signaling domain.
In another specific embodiment, the T lymphocytes provided herein express or se a ptide that comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, n said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CTLA4 hinge polypeptide sequence; (iii) a PD-l embrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling .
In another specific embodiment, the T lymphocytes provided herein express or comprise a polypeptide that comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an n binding domain that binds an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a PD-l hinge polypeptide sequence; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a costimulatory domain; and (v) an intracellular ing .
In another specific embodiment, the T cytes provided herein express or comprise a polypeptide that comprises, in order, from N—terminus to inus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a PD-l hinge polypeptide sequence; (iii) a CTLA4 transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, the T lymphocytes provided herein express or comprise a polypeptide that comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an n on a tumor cell, e.g., an n on a tumor cell bed above); (ii) a PD-l hinge polypeptide sequence; (iii) a PD-l transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; ellular signaling domain.
In a specific embodiment, the T lymphocytes provided herein that express or comprise one or more of the polypeptides provided herein, become activated or stimulated to proliferate when said polypeptide binds to the antigen to which the antigen binding domain or single-chain Fv domain of the polypeptide is specific. In another specific embodiment, the T lymphocytes provided herein that express or comprise one or more of the polypeptides ed herein, kill cells that express or comprise the antigen to which the antigen binding domain or single-chain Fv WO 00385 domain of the polypeptide is specific when the T lymphocytes come in contact with said antigen- expressing cells.
In another aspect, provided herein are methods of treating an individual having a disease or disorder, wherein the disease or disorder is characterized, or is characterizable, by cells expressing an antigen, comprising stering to the individual one or more of the T lymphocytes provided herein, i.e., T cytes that comprise or express a polypeptide described herein. 4. BRIEF DESCRIPTION OF THE DRAWINGS Figure 1 depicts expression of CARs by T cells three days after transduction of the T cells with lentiviral s that express the CARS.
Figure 2 depicts interleukin-2 (IL-2) production by CAR T cells (i) in the resting state (first bar), (ii) after exposure to anti-CD28 d bar); (iii) after exposure to 0.25 ug/ml HER2- Fc; (iv) after exposure to 0.5 ug/ml HER2-Fc; and (v) after exposure to 1.0 ug/ml HER2-Fc.
Figure 3 depicts GM-CSF production by CAR T cells (i) in the resting state (first bar), (ii) after exposure to aCD28 (second bar); (iii) after exposure to 0.25 ug/ml HER2-Fc; (iv) after re to 0.5 ug/ml HER2-Fc; and (v) after exposure to 1.0 ug/ml HER2-Fc.
Figure 4 depicts interferon-gamma (IFN—y) tion by CAR T cells (i) in the resting state (first bar), (ii) after exposure to aCD28 (second bar); (iii) after exposure to 0.25 ug/ml HER2-Fc; (iv) after exposure to 0.5 ug/ml HER2-Fc; and (v) after exposure to 1.0 ug/ml HER2- Figure 5 s intracellular tumor necrosis factor alpha (TNF-(x) production by CAR T cells after multiple rounds of exposure to 1.0 ug/ml HER2-Fc.
Figure 6 depicts percentages of CAR T cells the express certain anti-HER2 CARs or a mock control in the absence (top ) and presence (bottom panels) of stimulation with HER2-Fc. A) Percentages of anti-HER2 CAR T cells expressing Mock, HER2-28TMC, or HER2-28TM28C. B) Percentages of anti-HER2 CAR T cells sing HER2-CTLA4TM28C or HER2lBBTM28C.
Figure 7 s expression of CARs by T cells eleven days after transduction of the T cells with lentiviral vectors that express the CARS.
Figure 8 depicts IL-2, TNF-(x, and IFN—y tion by CAR T cells (i) in the resting state, (ii) after exposure to 0.25, 0.5, or 1.0 ug/ml HER2-Fc; or (iii) after CD3/CD28 ligation.
First ost) bar in each group: mock-transduced cells (no CAR expressed); second bar in each group: cells transduced with CAR designated HER-PDlTM-CD28-CD3; third bar in each group: cells transduced with CAR designated HER-CTLA4(l 89)TM-4lBB-CD3; fourth bar in each group: cells transduced with CAR ated HER-PDlTM-4lBB-CD3; fifth (rightmost) bar in each group: cells uced with CAR designated HER2-CD28TM-CD28-CD3.
Figure 9 s GM-CSF, Granzyme B, and IL-l3 production by CAR T cells (i) in the g state, (ii) after exposure to 0.25, 0.5, or 1.0 ug/ml HER2-Fc; or (iii) after CD3/CD28 ligation. First (leftmost) bar in each group: mock-transduced cells (no CAR expressed); second bar in each group: cells transduced with CAR designated HER-PDlTM-CD28-CD3; third bar in each group: cells transduced with CAR designated HER-CTLA4(l 89)TM-4lBB-CD3; fourth bar in each group: cells transduced with CAR designated lTM-4lBB-CD3; fifth (rightmost) bar in each group: cells transduced with CAR designated HER2-CD28TM-CD28-CD3.
Figure 10 depicts live T cell counts following stimulation with HER2-Fc. First (leftmost) bar: cells transduced with CAR designated HER2-CD28TM-CD28-CD3; second bar: cells transduced with CAR designated HER-PDlTM-CD28-CD3; third bar: cells transduced with CAR designated HER-CTLA4(l 89)TM-4lBB-CD3; fourth bar: cells transduced with CAR designated HER-PD lTM-4lBB-CD3; fifth (rightmost) bar: mock-transduced cells (no CAR sed).
. ED PTION In one , provided herein are polypeptides, e.g., chimeric antigen receptors (see, e.g., Eshhar, US. Patent No. 7,741,465), that can be expressed by immune system cells, e.g., T cytes (T cells), are membrane-bound in such immune system cells, and which comprise a transmembrane domain from an immune system protein that normally transmits an inhibitory signal to such immune system cells, e. g., a transmembrane domain from CTLA4 (Cytotoxic T- Lymphocyte Antigen 4 or Cytotoxic T-Lymphocyte Associated protein 4) or PD-l (Programmed Cell Death-l). Further provided herein are nucleic acid sequences encoding the polypeptides described herein. Also provided herein are immune system cells, e.g., T lymphocytes (e.g., T cells), sing such polypeptides.
The polypeptides provided herein comprise an extracellular domain that binds to an antigen, e. g., an antigen on a cell, a transmembrane domain, and an intracellular (cytoplasmic) signaling domain that transmits a primary activation signal to an immune cell. When the polypeptides provided herein are expressed on the surface of, e.g., a T lymphocyte, and when the extracellular domain of the CAR binds to an antigen, the intracellular signaling domain transmits a signal to the T cyte to activate and/or proliferate, and, if the antigen is present on a cell surface, to kill the cell expressing the antigen. Because T lymphocytes require two signals in order to fillly activate, a primary activation signal and a costimulatory signal, in certain embodiments, the polypeptides described herein can comprise a costimulatory domain such that binding of the antigen to the extracellular domain results in transmission of both a primary activation signal and a costimulatory signal.
The polypeptides, e.g., CARs, provided herein are fianctional, immune stimulatory polypeptides that comprise a transmembrane domain from a T cell co-inhibitory protein, e.g., CTLA4 or PD-l. In one aspect, provided herein is a polypeptide sing (i) a transmembrane domain from CTLA4 or PD-l, (ii) an intracellular domain (e.g., cytoplasmic domain) of an endogenous protein expressed on the surface of lymphocytes and that triggers the activation and/or proliferation of said lymphocytes, and (iii) an extracellular domain that binds to an antigen, wherein if the transmembrane domain is from CTLA4, the intracellular domain and extracellular domain of said polypeptide are not from CTLA4; and if the transmembrane domain is from PD-l, the intracellular domain and extracellular domain of said polypeptide are not from PD-l. In a specific embodiment, a T cyte sing a ptide described herein is ted or stimulated to proliferate when said ptide binds to an antigen to which the polypeptide is specific (i.e., an antigen that is bound by the extracellular domain of the polypeptide). In a specific embodiment, the polypeptide, when expressed on the surface of a T lymphocyte, directs the T lymphocyte to kill a cell expressing said antigen.
In certain embodiments the ptides provided herein comprise a transmembrane domain from CTLA4 or PD-l, or a portion thereof, wherein the CTLA4 or PD-l embrane domain is from a mammalian CTLA4 or PD-l, e.g., human, primate, or rodent, e. g., murine CTLA4 or PD-l. In a specific embodiment, the transmembrane domain does not comprise amino acids from the ellular domain, extracellular domain, or either the intracellular or extracellular domain of CTLA4 or PD-l. Specific, non-limiting examples of CTLA4 or PD-l embrane domain ces are ed below.
In a specific embodiment, provided herein is a polypeptide comprising a transmembrane domain from CTLA4, wherein the CTLA4 transmembrane domain is the polypeptide sequence encoded by exon 3 of a human ctla4 gene (e.g., GenBank Accession No. NM_005214.4 (CTLA4 cytotoxic T-lymphocyte-associated protein 4 (Homo sapiens); Gene ID: 1493)).
In another specific embodiment, the CTLA4 embrane domain of a polypeptide provided herein is or comprises the amino acid sequence PEPCPDSDFLLWILAAVSSGLFFYSFLLTAVSLSKM (in three-letter code, Pro-Glu-Pro-Cys- Pro-Asp-Ser-Asp-Phe-Leu-Leu-Trp-Ile-Leu-Ala-Ala-Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser- Phe-Leu-Leu-Thr-Ala-Val-Ser-Leu-Ser-Lys-Met) (SEQ ID NO:l).
In another specific ment, the CTLA4 transmembrane domain of a polypeptide provided herein is or ses the polypeptide sequence encoded by nucleotides 610-722 of GenBank Accession No. NM_005214.4 (CTLA4 cytotoxic T-lymphocyte-associated protein 4 (Homo sapiens); Gene ID: 1493).
In another specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence PDSDFLLWILAAVSSGLFFYSFLLTAVSL (in letter code, Pro-Asp-Ser-Asp-Phe-Leu- Leu-Trp-Ile-Leu-Ala-Ala-Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser-Phe-Leu-Leu-Thr-Ala-Val- u) (SEQ ID NO:2).
In another specific embodiment, the CTLA4 transmembrane domain of a ptide provided herein is or comprises the polypeptide sequence encoded by nucleotides 636-699 of GenBank Accession No. NM_005214.4 (CTLA4 cytotoxic T-lymphocyte-associated protein 4 (Homo sapiens); Gene ID: 1493).
In r specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence AAVSSGLFFYSFLLTAV (in three-letter code, Phe-Leu-Leu-Trp-Ile-Leu-Ala-Ala-Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser- Phe-Leu-Leu-Thr-Ala-Val) (SEQ ID NO:3).
In r specific embodiment, the CTLA4 transmembrane domain of a ptide provided herein is or comprises the polypeptide sequence FLLWILAAVSSGLFFYSFLLT (in three-letter code, Phe-Leu-Leu-Trp-Ile-Leu-Ala-Ala-Val-Ser-Ser-Gly-Leu-Phe-Phe-Tyr-Ser- Phe-Leu-Leu-Thr) (SEQ ID NO:4).
In another specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the polypeptide sequence FLLWILVAVSLGLFFYSFLVSAVSLS (in three-letter code, Phe-Leu-Leu-Trp-Ile-Leu-Val- 2013/076486 Ala-Val-Ser-Leu-Gly-Leu-Phe-Phe-Tyr-Ser-Phe-Leu-Val-Ser-Ala-Val-Ser-Leu-Ser) (SEQ ID NO:5).
In another specific embodiment, the CTLA4 transmembrane domain of a polypeptide provided herein is or comprises the polypeptide sequence LGIGNGTQIYVIDPEPSPDSDFLLWILAAVSSGLFFYSFLLTAVSLSKM (in three-letter code, Leu Gly Ile Gly Asn Gly Thr Gln Ile Tyr Val Ile Asp Pro Glu Pro Ser Pro Asp Ser Asp Phe Leu Leu Trp Ile Leu Ala Ala Val Ser Ser Gly Leu Phe Phe Tyr Ser Phe Leu Leu Thr Ala Val Ser Leu Ser Lys Met) (SEQ ID NO:9).
In another specific embodiment, the CTLA4 embrane domain of a polypeptide provided herein is or comprises the polypeptide sequence FLLWILAAVSSGLFFYSFLLTAVSLSKM (in three-letter code, Phe Leu Leu Trp Ile Leu Ala Ala Val Ser Ser Gly Leu Phe Phe Tyr Ser Phe Leu Leu Thr Ala Val Ser Leu Ser Lys Met) (SEQ ID NO: 10).
In another specific embodiment, the PD-l transmembrane domain of a ptide provided herein is or comprises the amino acid sequence TLVVGVVGGLLGSLVLLVWVLAVICSRAA (in three-letter code, Thr-Leu-Val-Val-Gly-Val- Val-Gly-Gly-Leu-Leu-Gly-Ser-Leu-Val-Leu-Leu-Val-Trp-Val-Leu-Ala-Val-Ile-Cys-Ser-Arg- Ala-Ala) (SEQ ID NO:6).
In another specific embodiment, the PD-l transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence LLGSLVLLVWVLAVI (in letter code, Val-Gly-Val-Val-Gly-Gly-Leu-Leu-Gly-Ser-Leu-Val-Leu-Leu-Val-Trp-Val- Leu-Ala-Val-Ile) (SEQ ID NO:7).
In r specific embodiment, the PD-l transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence GVVGGLLGSLVLLVWVLAVI (in three-letter code, Phe-Glu-Thr-Leu-Val-Val-Gly- Val-Val-Gly-Gly-Leu-Leu-Gly-Ser-Leu-Val-Leu-Leu-Val-Trp-Val-Leu-Ala-Val-Ile) (SEQ ID NO:8).
In another specific embodiment, the PD-l transmembrane domain of a polypeptide provided herein is or comprises the amino acid sequence FQTLVVGVVGGLLGSLVLLVWVLAVICSRAA (in three-letter code, Phe Gln Thr Leu Val WO 00385 Val Gly Val Val Gly Gly Leu Leu Gly Ser Leu Val Leu Leu Val Trp Val Leu Ala Val Ile Cys Ser Arg Ala Ala) (SEQ ID .
As exemplified by the CTLA-4 and PD-1 transmembrane domain sequences described herein (i.e., SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, and SEQ ID NO:11), the transmembrane domains described , in certain embodiments, comprise one or more amino acids from the extracellular domain and/or one or more amino acids from the intracellular domain of the protein from which they are derived (i.e., CTLA-4 or PD-l). In certain embodiments, the transmembrane domains described herein comprise 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 amino acids from the extracellular domain of the n from which they are derived (i.e., CTLA-4 or PD-l). In certain ments, the embrane domains described herein comprise 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 amino acids from the intracellular domain of the protein from which they are derived (i.e., CTLA-4 or PD-l). In certain ments, the transmembrane domains described herein comprise (i) 1, 2, 3, 4, 5, 6, 7, 8, 9, , 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 amino acids from the ellular domain of the protein from which they are derived (i.e., CTLA-4 or PD-l) and (ii) 1, 2, 3, 4, 5, 6, 7, 8, 9,10,11,12,13,14,15,16,17,18,19, 20, 21, 22, 23, 24, or 25 amino acids from the intracellular domain of the protein from which they are derived (i.e., CTLA-4 or PD-l).
In another specific embodiment, provided herein is a polypeptide that comprises a embrane domain, wherein the transmembrane domain is or comprises at least 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or 21 consecutive amino acids disclosed in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NOilO, or SEQ ID NOill. In another specific embodiment, provided herein is a polypeptide that comprises a transmembrane domain, wherein the transmembrane domain is at least 75%, at least 80%, at least 85%, at least 90%, or at least 95%, identical to SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:11.
In certain embodiments, provided herein is a nucleotide sequence that encodes one of the polypeptides disclosed herein. In a specific embodiment, provided herein is a nucleotide sequence that comprises a nucleotide sequence that encodes any of the amino acid sequences WO 00385 disclosed in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:11. In another specific embodiment, provided herein is a nucleic acid that encodes a polypeptide described herein, wherein the nucleic acid comprises a nucleotide sequence that encodes at least , 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or 21 consecutive amino acids sed in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:11. In another specific embodiment, provided herein is a nucleic acid sequence that encodes a polypeptide that is at least 75%, at least 80%, at least 85%, at least 90%, or at least 95%, identical to SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:11.
In constructing the polypeptides provided herein, in certain embodiments, human sequences may be ed with non-human sequences. For example, a polypeptide comprising human extracellular and intracellular domain amino acid sequences may comprise a transmembrane domain from a non-human species; e.g., may comprise a murine CTLA4 embrane domain or a murine PD-l embrane domain. In a more specific embodiment, the polypeptide comprises human amino acid sequences for the extracellular and intracellular domains, and comprises a transmembrane domain having, or consisting of, the amino acid ce of SEQ ID NO:5.
The extracellular s of the polypeptides provided herein bind to an antigen of interest. In certain embodiments, the extracellular domain of a polypeptide provided herein comprises a receptor, or a portion of a receptor, that binds to said n. The extracellular domain may be, e.g., a receptor, or a portion of a receptor, that binds to said antigen. In certain embodiments, the extracellular domain comprises, or is, an antibody or an antigen-binding portion thereof. In specific embodiments, the ellular domain comprises, or is, a single- chain Fv domain. The single-chain Fv domain can comprise, for e, a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen.
The antigen to which the extracellular domain of the polypeptides provided herein recognizes can be any antigen of interest, e.g., can be an antigen on a tumor cell. The tumor cell may be, e.g., a cell in a solid tumor, or cell of a non-solid tumor, e.g., a cell of a blood cancer. The antigen can be any antigen that is expressed on a cell of any tumor or cancer type, e.g., cells of a lymphoma, a lung cancer, a breast cancer, a prostate cancer, an adrenocortical carcinoma, a thyroid carcinoma, a nasopharyngeal carcinoma, a melanoma, e.g., a malignant melanoma, a skin carcinoma, a colorectal carcinoma, a desmoid tumor, a desmoplastic small round cell tumor, an endocrine tumor, an Ewing sarcoma, a peripheral primitive neuroectodermal tumor, a solid germ cell tumor, a hepatoblastoma, a neuroblastoma, a non-rhabdomyosarcoma soft tissue sarcoma, an osteosarcoma, a retinoblastoma, a rhabdomyosarcoma, a Wilms tumor, a glioblastoma, a , a fibroma, a lipoma, or the like. In more specific ments, said lymphoma can be chronic lymphocytic leukemia (small lymphocytic lymphoma), B-cell prolymphocytic ia, lymphoplasmacytic lymphoma, Waldenstrom macroglobulinemia, splenic marginal zone lymphoma, plasma cell myeloma, plasmacytoma, extranodal marginal zone B cell lymphoma, MALT lymphoma, nodal marginal zone B cell lymphoma, follicular lymphoma, mantle cell lymphoma, diffuse large B cell lymphoma, mediastinal c) large B cell lymphoma, intravascular large B cell lymphoma, primary effusion lymphoma, Burkitt’s lymphoma, T lymphocyte prolymphocytic leukemia, T lymphocyte large granular lymphocytic leukemia, aggressive NK cell leukemia, adult T lymphocyte ia/lymphoma, extranodal NK/T lymphocyte lymphoma, nasal type, enteropathy-type T lymphocyte lymphoma, hepatosplenic T lymphocyte lymphoma, blastic NK cell lymphoma, mycosis des, Sezary me, primary cutaneous anaplastic large cell ma, lymphomatoid papulosis, angioimmunoblastic T lymphocyte lymphoma, peripheral T lymphocyte ma cified), anaplastic large cell ma, Hodgkin lymphoma, or a non-Hodgkin lymphoma. Antigens specific to certain cancers, as well as s for identifying such antigens, are known in the art.
In a specific embodiment, in which the cancer is chronic lymphocytic leukemia (CLL), the B cells of the CLL have a normal karyotype. In other specific embodiments, in which the cancer is chronic lymphocytic leukemia (CLL), the B cells of the CLL carry a l7p deletion, an llq deletion, a 12q trisomy, a l3q deletion or a p53 deletion.
In certain embodiments, the antigen recognized by the ellular domain of a polypeptide bed herein is a tumor-associated n (TAA) or a tumor-specific antigen (TSA). In various specific embodiments, the tumor-associated antigen or tumor-specific antigen is, without limitation, Her2, prostate stem cell n (PSCA), fetoprotein (AFP), carcinoembryonic antigen (CEA), cancer antigen-125 (CA-125), CAl9-9, calretinin, MUC-l, lial membrane protein (EMA), epithelial tumor antigen (ETA), tyrosinase, melanoma- associated antigen (MAGE), CD19, CD22, CD27, CD30, CD34, CD45, CD70, CD99, CD117, EGFRVIII (epidermal growth factor variant III), mesothelin, PAP (prostatic acid phosphatase), prostein, TARP (T cell receptor gamma alternate reading frame n), , STEAPl (six- transmembrane epithelial antigen of the prostate 1), chromogranin, cytokeratin, desmin, glial lary acidic protein (GFAP), gross cystic disease fluid protein (GCDFP-15), HMB-45 antigen, protein melan-A (melanoma antigen recognized by T lymphocytes; MART-1), myo-D1, muscle-specific actin (MSA), neurofilament, neuron-specific enolase (NSE), placental alkaline phosphatase, synaptophysis, thyroglobulin, thyroid transcription factor-1, the dimeric form of the pyruvate kinase isoenzyme type M2 (tumor M2-PK), an abnormal ras protein, or an al p53 protein.
In certain embodiments, the TAA or TSA ized by the extracellular domain of a polypeptide described herein is in owB3 (CD61), galactin, or Ral-B.
In certain embodiments, the TAA or TSA recognized by the ellular domain of a polypeptide described herein is a cancer/testis (CT) antigen, e.g., BAGE, CAGE, CTAGE, FATE, GAGE, HCA661, HOM-TES-85, MAGEA, MAGEB, MAGEC,NA88,NY-ESO-1,NY-SAR- , OY-TES-l, SPANXBl, SPA17, SSX, SYCPl, or TPTE.
In certain other embodiments, the TAA or TSA recognized by the extracellular domain of a polypeptide described herein is a ydrate or ganglioside, e.g., filC-GMl, GM2 (oncofetal antigen-immunogenic-l; OFA-I-l); GD2 (OFA-I-2), GM3, GD3, and the like.
In certain other embodiments, the TAA or TSA recognized by the extracellular domain of a polypeptide described herein is alpha-actinin-4, Bage-l, BCR—ABL, Bcr-Abl fiasion protein, beta-catenin, CA 125, CA 15-3 (CA 27.29\BCAA), CA 195, CA 242, CA-50, CAM43, Casp-8, cdc27, cdk4, cdkn2a, CEA, coa-1, dek-can fiasion protein, EBNA, EF2, Epstein Barr Virus antigens, ETV6-AML1 fusion protein, HLA-A2, HLA-A11, hsp70-2, KIAAO205, Mart2, Mum- 1, 2, and 3, neo-PAP, myosin class I, OS-9, pml-RARu fusion protein, PTPRK, K-ras, N—ras, triosephosphate isomerase, Gage 6,7, GnTV, HerV-K-mel, Lage-l, NA-88, NY-Eso- 1/Lage-2, SP17, SSX-2, nt2, , gp100 (Pmel 17), nase, TRP-1, TRP-2, MAGE-l, MAGE-3, RAGE, , GAGE-2, p15(58), RAGE, H- , SCP-l, Hom/Mel-40, PRAME, p53, Ras, neu, E2A-PRL, H4-RET, K, MYL-RAR, human papillomaVirus (HPV) antigens E6 and E7, TSP-180, MAGE-4, MAGE-5, MAGE-6, bB2, p180erbB-3, c-met, nm-23H1, PSA, TAG4, CA 19-9, CA 72-4, CAM 17.1, NuMa, K-ras, 13-Catenin, Mum-1, WO 00385 p16, TAGE, PSMA, CT7, telomerase, 43-9F, 5T4, 79ngp72, l3HCG, BCA225, BTAA, , CD68\KPl, CO-029, FGF-S, G250, Ga733 (EpCAM), HTgp-l75, M344, MA-SO, MG7-Ag, MOV18, NB\70K, NY-CO-l, RCAS l, SDCCAGl6, TA-90, TAAL6, TAG72, TLP, or TPS.
Other tumor-associated and tumor-specific ns are known to those in the art.
Antibodies, and scFvs, that bind to TSAs and TAAs are known in the art, as are nucleotide sequences that encode them.
In certain specific embodiments, the antigen ized by the extracellular domain of a polypeptide described herein is an antigen not considered to be a TSA or a TAA, but which is nevertheless associated with tumor cells, or damage caused by a tumor. In certain embodiments, for example, the antigen is, e. g., a growth factor, cytokine or eukin, e. g., a growth , ne, or interleukin associated with angiogenesis or vasculogenesis. Such growth factors, cytokines, or eukins can include, e.g., vascular endothelial growth factor (VEGF), basic last growth factor (bFGF), platelet-derived growth factor (PDGF), hepatocyte growth factor (HGF), insulin-like growth factor (IGF), or interleukin-8 (IL-8). Tumors can also create a hypoxic environment local to the tumor. As such, in other ic embodiments, the antigen is a hypoxia-associated factor, e.g., HIF-lu, HIF-lB, HIF-20L, HIF-2B, HIP-30L, or HIF-3B. Tumors can also cause localized damage to normal tissue, causing the release of les known as damage associated molecular pattern molecules (DAMPs; also known as alarmins). In certain other specific embodiments, therefore, the antigen is a DAMP, e.g., a heat shock protein, chromatin-associated protein high mobility group box 1 (HMGB l), SlOOA8 (MRP8, calgranulin A), SlOOA9 (MRPl4, calgranulin B), serum amyloid A (SAA), or can be a deoxyribonucleic acid, adenosine triphosphate, uric acid, or heparin sulfate.
In certain ments, the extracellular domain of the polypeptides described herein is joined to the transmembrane domain of the polypeptide by a linker, spacer or hinge polypeptide sequence, e.g., a sequence from CD28 or a sequence from CTLA4.
In n embodiments, the intracellular domain of a polypeptide described herein is or comprises an ellular domain or motif of a protein that is expressed on the surface of T cells and triggers activation and/or proliferation of said T cells. Such a domain or motif is able to transmit a primary antigen-binding signal that is necessary for the activation of a T lymphocyte in response to the antigen’s binding to the CAR’s extracellular portion. Typically, this domain or motif comprises, or is, an ITAM (immunoreceptor tyrosine-based tion motif). ITAM- containing polypeptides suitable for CARS include, for example, the zeta CD3 chain (CD35;) or ontaining portions thereof. In a specific embodiment, the intracellular domain is a CD35; intracellular signaling domain. In other specific embodiments, the intracellular domain is from a lymphocyte or chain, a TCIVCD3 complex protein, an Fc receptor subunit or an IL-2 receptor subunit.
In certain embodiments, the ptides provided herein additionally comprise one or more co-stimulatory domains or motifs, e.g., as part of the intracellular domain of the polypeptide. The one or more co-stimulatory domains or motifs can be, or comprise, one or more of a co-stimulatory CD27 polypeptide sequence, a mulatory CD28 polypeptide sequence, a co-stimulatory 0X40 (CD134) polypeptide sequence, a co-stimulatory 4-1BB ) polypeptide sequence, or a mulatory inducible T-cell costimulatory (ICOS) polypeptide sequence, or other costimulatory domain or motif.
In a specific embodiment, a polypeptide provided herein ses, in order, from N- terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen binding domain that binds an n on a tumor cell, e.g., an antigen on a tumor cell bed above); (ii) a CD28 or CTLA4 hinge polypeptide sequence; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a costimulatory domain; and (v) an intracellular signaling domain.
In another ic embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen binding domain that binds an n on a tumor cell, e. g., an antigen on a tumor cell bed above); (ii) a CH2CH3 hinge polypeptide sequence; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an n binding domain that binds an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CD28 hinge polypeptide sequence; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a 4-lBB costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen binding domain that binds an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a PD-l hinge polypeptide sequence; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a costimulatory ; and (V) an intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CD28 hinge polypeptide sequence; (iii) a CTLA4 transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CTLA4 hinge polypeptide sequence; (iii) a CTLA4 embrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; ellular signaling domain.
In another c ment, a ptide provided herein comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain sing a VL linked to VH by a , wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CD28 hinge polypeptide sequence; (iii) a PD-l transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; ellular signaling domain.
In another specific ment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an n on a tumor cell described above); (ii) a CTLA4 hinge polypeptide sequence; (iii) a PD-l transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide ed herein comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CTLA4 hinge polypeptide WO 00385 sequence; (iii) a PD-l transmembrane domain; (iv) a CD28 costimulatory ; and (V) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide ed herein comprises, in order, from N—terminus to C-terminus: (i) an antigen-binding domain (e.g., an antigen binding domain that binds an n on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a PD-l hinge polypeptide sequence; (iii) a CTLA4 or PD-l transmembrane domain; (iv) a costimulatory domain; and (v) an ellular signaling .
In another specific embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an dy that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an n on a tumor cell described above); (ii) a PD-l hinge polypeptide sequence; (iii) a CTLA4 transmembrane ; (iv) a CD28 ulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide ed herein comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, n said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a PD-l hinge polypeptide sequence; (iii) a PD-l transmembrane domain; (iv) a CD28 costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, a polypeptide provided herein comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an dy that binds an antigen of interest (e.g., an antigen on a tumor cell, e.g., an antigen on a tumor cell described above); (ii) a CTLA4 hinge polypeptide sequence; (iii) a CTLA4 transmembrane domain; (iv) a 4-lBB costimulatory domain; and (v) a CD35; intracellular signaling domain.
In another specific embodiment, the polypeptide comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, n said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e. g., an antigen on a tumor cell described above); (ii) a CD28 hinge polypeptide sequence; (iii) a PD-l transmembrane domain; (iv) a 4-lBB costimulatory domain; and (v) a CD35; intracellular signaling domain. 2013/076486 In another specific embodiment, the polypeptide comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of interest (e.g., an antigen on a tumor cell, e. g., an antigen on a tumor cell described above); (ii) a CTLA4 hinge polypeptide sequence; (iii) a PD-l transmembrane ; (iv) a 4-lBB costimulatory domain; and (V) a CD35; ellular signaling domain.
In r specific embodiment, the polypeptide comprises, in order, from N—terminus to C-terminus: (i) a single-chain Fv domain comprising a VL linked to VH by a linker, wherein said VL and VH are from an antibody that binds an antigen of st (e.g., an antigen on a tumor cell, e. g., an antigen on a tumor cell described above); (ii) a PD-l hinge ptide sequence; (iii) a CTLA4 transmembrane domain; (iv) a 4-lBB costimulatory domain; and (V) a CD35; intracellular signaling domain. .1. Isolated Polypeptides [Chimeric Antigen Receptors] The T lymphocyte-stimulatory polypeptides provided herein, which comprise a CTLA4 or PD-l transmembrane domain, may be modified by, e. g., acylation, amidation, glycosylation, methylation, phosphorylation, sulfation, sumoylation, tylation, or the like. The polypeptides may be labeled with a label capable of ing a detectable signal, e. g., with radioisotopes and fluorescent compounds. One or more side chains of the first or second polypeptides may be derivatized, e.g., derivatization of l and amino terminal residues with succinic or other carboxylic acid ides, or derivatization with, e.g., imidoesters such as methyl picolinimidate; pyridoxal phosphate; pyridoxal; chloroborohydride; trinitrobenzenesulfonic acid; O-methylisourea; 2,4 pentanedione; and transaminase-catalyzed reaction with glyoxylate. Carboxyl side groups, aspartyl or glutamyl, may be selectively modified by reaction with carbodiimides (R—N=C=N—R') such as l-cyclohexyl(2- linyl-(4-ethyl)carbodiimide or l-ethyl(4-azonia-4,4-dimethylpentyl)carbodiimide. .2. Isolated Nucleic Acids ed herein are nucleic acid sequences (polynucleotides) that encode one or more of the polypeptides provided herein. The polynucleotides may be contained within any polynucleotide vector suitable for the ormation of immune cells, e.g., T lymphocytes. For example, T lymphocytes may be transformed using synthetic vectors, lentiviral or retroviral vectors, autonomously replicating plasmids, a virus (e.g., a retrovirus, lentivirus, adenovirus, or 2013/076486 herpes virus), or the like, ning polynucleotides encoding the first and second ptides (e. g., chimeric receptors). Lentiviral vectors suitable for transformation of T lymphocytes include, but are not limited to, e. g., the lentiviral vectors described in US. Patent Nos. 136; 782; 953; 7,083,981; and 7,250,299, the disclosures of which are hereby incorporated by nce in their entireties. HIV s suitable for transformation of T lymphocytes include, but are not limited to, e.g., the vectors described in US. Patent No. ,665,577, the disclosure of which is hereby incorporated by reference in its entirety.
Nucleic acids useful in the production of the first and second polypeptides, e.g., within a modified T lymphocyte, include DNA, RNA, or nucleic acid analogs. Nucleic acid analogs can be modified at the base moiety, sugar moiety, or phosphate backbone, and can include deoxyuridine substitution for deoxythymidine, 5-methyl-2'-deoxycytidine or 5-bromo-2'- deoxycytidine substitution for deoxycytidine. Modifications of the sugar moiety can include modification of the 2' hydroxyl of the ribose sugar to form 2'-O-methyl or llyl sugars. The deoxyribose phosphate backbone can be modified to produce morpholino nucleic acids, in which each base moiety is linked to a six membered, morpholino ring, or peptide nucleic acids, in which the hosphate backbone is replaced by a pseudopeptide backbone and the four bases are retained. See, for example, Summerton and Weller (1997) Antisense Nucleic Acid Drug Dev. 7:187-195; and Hyrup et al. (1996) Bioorgan. Med. Chain. . In addition, the deoxyphosphate ne can be replaced with, for example, a phosphorothioate or phosphorodithioate backbone, a phosphoroamidite, or an alkyl phosphotriester backbone. .3. T Lymphocytes Provided herein are immune cells, e. g., T lymphocytes, comprising the polypeptides provided . The T lymphocytes provided herein may be naive T lymphocytes or MHC- restricted T lymphocytes. In certain embodiments, the T lymphocytes provided herein are tumor infiltrating lymphocytes (TILs). In certain embodiments, the T lymphocytes provided herein have been isolated from a tumor biopsy, or have been ed from T lymphocytes isolated from a tumor biopsy. In certain other embodiments, the T lymphocytes provided herein have been isolated from, or expanded fiom, T lymphocytes expanded from, peripheral blood, cord blood, or lymph.
In certain embodiments, the immune cells provided herein that comprise a polypeptide provided herein, e.g., modified T lymphocytes, are autologous to an individual to whom the modified T cytes are to be administered. In n embodiments, the modified T lymphocytes provided herein are allogeneic to an individual to Whom the modified T lymphocytes are to be administered. Where allogeneic T lymphocytes are used to e modified T lymphocytes, T lymphocytes can be selected that will reduce the possibility of graft- versus-host disease (GVHD) in the individual. For example, in certain embodiments, virus- specific T lymphocytes can be selected for ation of modified T lymphocytes; such lymphocytes will be expected to have a greatly reduced native capacity to bind to, and thus become activated by, any recipient antigens. In certain embodiments, recipient-mediated rejection of allogeneic T lymphocytes can be reduced by co-administration to the host of one or more immunosuppressive agents, e.g., cyclosporine, tacrolimus, sirolimus, cyclophosphamide, or the like.
In one embodiment, T lymphocytes are obtained from an individual, optionally expanded, and then transformed with a polynucleotide ng a CTLA4 or PD-l transmembrane domain- containing polypeptide described herein, and optionally expanded. In another embodiment, T lymphocytes are obtained from an individual, ally then expanded, and then transformed with a polynucleotide encoding a CTLA4 or PD-l transmembrane domain-containing polypeptide described herein, and optionally then expanded at least one more time. Cells containing the polynucleotides may be selected using a selectable .
In certain embodiments, the modified T lymphocytes described herein s or comprise native TCR proteins, e.g., TCR-0t and TCR-B that are capable of forming native TCR complexes, in addition to the CTLA4 or PD-l transmembrane domain-containing ptide.
In certain other embodiments, either or both of the native genes encoding TCR-0t and TCR-B in the d T lymphocytes are modified to be non-functional, e.g., a portion or all are deleted, a mutation is ed, etc.
In certain embodiments, the T lymphocytes described herein are isolated from a tumor lesion, e.g., are tumor-infiltrating lymphocytes; such T lymphocytes are expected to be specific for a TSA or TAA.
In n embodiments, the signaling motifs of the CTLA4 or PD-l transmembrane -containing polypeptide, e.g., CAR, can be used to promote proliferation and expansion of the modified T lymphocytes described herein. For example, fied T lymphocytes, and T lymphocytes comprising a polypeptide comprising a CD35; signaling domain and a CD28 co- WO 00385 atory domain can be expanded using antibodies to CD3 and CD28, e.g., antibodies attached to beads, or to the surface of a cell culture plate; see, e.g., US. Patent Nos. 5,948,893; 6,534,055; 6,352,694; 6,692,964; 6,887,466; and 6,905,681. In certain embodiments, the antigen, to which the extracellular domain of the CTLA4 or PD-l transmembrane domain-containing polypeptide binds, can be used to promote selective expansion of T lymphocytes expressing the polypeptide. For example, in one embodiment, in which the antigen is a TSA, T lymphocytes comprising the polypeptide cultured in the presence of the TSA, e.g., a soluble form of the TSA, resulting in sed proliferation as compared to culturing in the absence of the TSA.
In certain embodiments, T lymphocytes comprising a CTLA4 or PD-l transmembrane domain-containing polypeptide described herein are stimulated to proliferate using an antibody that binds to a signaling domain on the polypeptide coupled with the antigen that can be bound by the extracellular antigen-binding domain of the polypeptide. For example, in embodiments in which the ptide’s signaling domain is CD35; and the antigen that binds to the polypeptide is a TSA, T lymphocytes comprising the polypeptide are stimulated to proliferate by culturing the cells in the presence of the TSA (e. g., a soluble form of the TSA) in combination with an antibody that binds to CD35; In any of the above embodiments, the antigen and/or antibody can exist free in the medium in which the T lymphocytes are cultures, or either or both can be attached to a solid support, e.g., tissue e plastic surface, beads, or the like.
The T cytes comprising a CTLA4 or PD-l transmembrane domain-containing polypeptide bed herein can optionally comprise a "suicide gene" or y switch" that enables killing of all or substantially all of the T lymphocytes when desired. For example, the modified T lymphocytes described herein, in certain ments, can comprise an HSV thymidine kinase gene (HSV-TK), which causes death of the modified T lymphocytes upon contact with lovir. In r embodiment, the modified T lymphocytes express or comprise an inducible caspase, e. g., an inducible caspase 9 (icaspase9), e. g., a fusion protein between caspase 9 and human FK506 binding protein allowing for dimerization using a specific small molecule pharmaceutical. See Straathof et al., Blood ):4247-4254 (2005). .4. Methods of Using Modified T Lymphocytes The modified immune cells, e. g., the modified T lymphocytes, provided herein that comprise a CTLA4 or PD-l transmembrane -containing polypeptide, e.g., CAR, can be used to treat an individual having one or more types of cells d to be targeted by T lymphocytes, e.g., one or more types of cells to be killed. In certain embodiments, the cells to be killed are cancer cells, e.g., tumor cells. In certain embodiments, the cancer cells are cells of a solid tumor. In certain embodiments, the cells are cells of a ma, a lung cancer, a breast cancer, a prostate cancer, an cortical carcinoma, a d carcinoma, a aryngeal carcinoma, a ma, e. g., a ant melanoma, a skin carcinoma, a colorectal carcinoma, a desmoid tumor, a desmoplastic small round cell tumor, an endocrine tumor, an Ewing sarcoma, a peripheral primitive neuroectodermal tumor, a solid germ cell tumor, a hepatoblastoma, a neuroblastoma, a non-rhabdomyosarcoma soft tissue sarcoma, an osteosarcoma, a retinoblastoma, a myosarcoma, a Wilms tumor, a glioblastoma, a myxoma, a fibroma, a lipoma, or the like. In more specific embodiments, said lymphoma can be chronic lymphocytic leukemia (small lymphocytic lymphoma), B-cell prolymphocytic leukemia, lymphoplasmacytic lymphoma, Waldenstrom lobulinemia, splenic marginal zone lymphoma, plasma cell myeloma, plasmacytoma, extranodal al zone B cell lymphoma, MALT lymphoma, nodal marginal zone B cell lymphoma, follicular ma, mantle cell lymphoma, diffuse large B cell lymphoma, mediastinal (thymic) large B cell lymphoma, intravascular large B cell lymphoma, primary effilsion lymphoma, Burkitt’s lymphoma, T lymphocyte prolymphocytic leukemia, T lymphocyte large granular lymphocytic leukemia, aggressive NK cell leukemia, adult T lymphocyte leukemia/lymphoma, extranodal NK/T lymphocyte lymphoma, nasal type, enteropathy-type T lymphocyte lymphoma, hepatosplenic T lymphocyte lymphoma, blastic NK cell lymphoma, mycosis filngoides, Sezary syndrome, primary cutaneous anaplastic large cell lymphoma, lymphomatoid sis, angioimmunoblastic T lymphocyte lymphoma, peripheral T lymphocyte lymphoma (unspecified), anaplastic large cell lymphoma, Hodgkin lymphoma, or a non-Hodgkin lymphoma.
Efficacy of the modified T lymphocytes described herein, after administration to an individual having a disease or disorder remediable by T lymphocytes, e.g., an individual having cancer, can be assessed by one or more criteria, specific to the particular disease or disorder, known to those of ordinary skill in the art, to be tive of progress of the disease or er.
Generally, administration of the d T lymphocytes described herein to such an individual is effective when one or more of said criteria detectably, e.g., significantly, moves from a disease state value or range to, or towards, a normal value or range.
The d T lymphocytes described herein may be formulated in any pharmaceutically-acceptable solution, preferably a solution suitable for the delivery of living cells, e.g., saline solution (such as Ringer's solution), gelatins, carbohydrates (e.g., lactose, amylose, starch, or the like), fatty acid esters, hydroxymethylcellulose, polyvinyl pyrolidine, etc.
Such preparations are preferably sterilized prior to addition of the modified T lymphocytes, and may be mixed with auxiliary agents such as lubricants, preservatives, stabilizers, fiers, salts for influencing osmotic pressure, buffers, and coloring. Pharmaceutical carriers le for use in formulating the modified T lymphocytes are known in the art and are described, for example, in WO 96/05309.
In certain embodiments, the modified T cytes described herein are formulated into individual doses, wherein said individual doses comprise at least, at most, or about 1x104, 5x104, 5x105,1x106,5x106,1x107,5x107,1x108,5x108,1x109,5x109,1x101°,5><101°,or 1 modified T lymphocytes. In certain embodiments, the modified T lymphocytes are formulated for intravenous, intraarterial, parenteral, intramuscular, subcutaneous, intrathecal, or intraocular administration, or administration within a particular organ or tissue. 6. EXAMPLES 6.1. Example 1: Treatment of B Cell Lymphoma An individual presents with B-cell chronic lymphocytic leukemia, a B cell lymphoma.
Testing of B cells from the individual determines that the B cells carry a 17p deletion. T lymphocytes are obtained from the individual, transfected with a lentiviral vector comprising a nucleotide sequence that s a chimeric antigen receptor (CAR), and expanded using CD3+CD28-coated beads to sufficient numbers for administration. The chimeric receptor comprises an extracellular antigen-binding region that binds to CD19; a embrane domain from CTLA4; an intracellular mulatory domain from CD28; and an intracellular CD35; domain. The dual is administered between 109 and 1010 of the T lymphocytes in a 200 ml saline solution by intravenous infusion over 30 minutes. The individual is red for two weeks afterwards to establish a ion of at least 90% of CD19+ B cells in the individual’s blood. 6.2. Example 2: Treatment of a B Cell Lymphoma An individual presents with B-cell chronic lymphocytic leukemia, a B cell lymphoma. g of B cells from the individual determines that the B cells carry a 17p deletion. About 106 T lymphocytes are ed from the individual, transfected with a lentiviral vector comprising a nucleotide sequence that s a CAR. The CAR comprises an extracellular antigen-binding region that binds to CD19; a transmembrane domain from PD-l; an intracellular co-stimulatory domain from CD28; and an ellular CD35; . CAR-expressing T cells are administered to the individual without prior expansion of the T cells. The individual is administered between 105 and 106 of the T lymphocytes in 200 ml saline solution by intravenous infusion over 30 minutes. The individual is monitored for two weeks afterwards to establish a ion of at least 90% of CD19+ B cells in the individual’s blood. 6.3. Example 3: ent of B Cell Lymphoma An dual presents with B-cell chronic lymphocytic ia, a B cell lymphoma.
Testing of B cells from the individual determines that the B cells carry a p53 deletion. T lymphocytes are obtained from the individual, transfected with a lentiviral vector comprising a nucleotide sequence that encodes a CAR, and expanded using CD3+CD28-coated beads to sufficient numbers for administration. The CAR comprises an extracellular antigen-binding region that binds to CD19; a transmembrane domain from CTLA4; intracellular co-stimulatory domains from each of CD28, 4-lBB, and 0X40; and an intracellular CD35; domain. The individual is administered between 109 and 1010 of the T lymphocytes in 200 ml saline solution by intravenous infusion over 30 minutes. The individual is monitored for two weeks afterwards to establish a reduction of at least 90% of CD19+ B cells in the individual’s blood. 6.4. Example 4: ent of a B Cell Lymphoma An individual presents with B-cell chronic lymphocytic leukemia, a B cell lymphoma. Testing of B cells from the individual ines that the B cells carry a p53 deletion. About 106 T lymphocytes are obtained from the individual, transfected with a lentiviral vector comprising a nucleotide sequence that encodes a CAR. The CAR comprises an ellular antigen-binding region that binds to CD19; a transmembrane domain from PD-l; ellular co-stimulatory domains from each of CD28, 4-lBB, and 0X40; and an intracellular CD35; domain. CAR- expressing T cells are administered to the individual without prior expansion of the T cells. The individual is administered n 105 and 106 of the T lymphocytes in 200 ml saline solution by intravenous infiJsion over 30 minutes. The individual is monitored for two weeks afterwards to establish a reduction of at least 90% of CD19+ B cells in the individual’s blood. 6.5. Example 5: Treatment of Prostate Cancer An individual presents with stage T2 prostate cancer, with no spread to regional or other lymph nodes (N0, M0). Histological grade is determined to be G2. l, the individual is determined to have Stage 11 prostate cancer. The individual is administered between 109 and 1010 modified T lymphocytes that comprise a CAR, in 200 ml saline solution by intravenous on over 30 minutes. The CAR comprises an extracellular antigen-binding region that binds to PSCA, a transmembrane domain from CTLA4, an intracellular co-stimulatory domain from CD28, and an intracellular CD35; domain. The individual is re-assessed for prostate cancer stage and spread to lymph nodes, and histology of biopsied prostate tissue is performed, at 30, 60 and 90 days post-administration. 6.6. Example 6: Treatment of Prostate Cancer An individual presents with stage T2 prostate cancer, with no spread to regional or other lymph nodes (N0, M0). Histological grade is determined to be G2. Overall, the individual is determined to have Stage 11 prostate cancer. The individual is administered n 109 and 1010 modified T lymphocytes that comprise a CAR, in 200 ml saline solution by intravenous infusion over 30 minutes. The CAR comprises an ellular antigen-binding region that binds to PSCA, a transmembrane domain from PD-l an intracellular co-stimulatory domain from CD28, and an intracellular CD35; domain. The dual is re-assessed for prostate cancer stage and spread to lymph nodes, and histology of ed te tissue is performed, at 30, 60 and 90 days post-administration. 6.7. Example 7: Treatment of Prostate Cancer An individual presents with stage T2 prostate cancer, with no spread to regional or other lymph nodes (N0, M0). Histological grade is ined to be G2. Overall, the individual is determined to have Stage 11 te cancer. The individual is administered between 109 and 1010 ed T lymphocytes that comprise a CAR, in 200 ml saline solution by intravenous infusion over 30 minutes. The CAR comprises an extracellular antigen-binding region that binds to PSCA, a transmembrane domain from CTLA-4, intracellular co-stimulatory domains from each of CD28, 4-lBB, and 0X40, and an ellular CD35; domain. The individual is re- assessed for prostate cancer stage and spread to lymph nodes, and histology of ed prostate tissue is performed, at 30, 60 and 90 days post-administration. 6.8. Example 8: Treatment of Prostate Cancer An individual presents with stage T2 prostate , with no spread to regional or other lymph nodes (N0, M0). Histological grade is determined to be G2. Overall, the individual is determined to have Stage 11 prostate cancer. The individual is administered n 109 and 1010 modified T lymphocytes that comprise a CAR, in 200 ml saline solution by intravenous infusion over 30 minutes. The CAR comprises an extracellular antigen-binding region that binds to PSCA, a transmembrane domain from PD-l intracellular co-stimulatory s from each of CD28, 4-1BB, and 0X40, and an intracellular CD35; domain. The individual is re-assessed for prostate cancer stage and spread to lymph nodes, and histology of biopsied prostate tissue is performed, at 30, 60 and 90 days post-administration. 6.9. e 9: CARS Comprising a CTLA-4 or PD-l Transmembrane Domain This e demonstrates that a chimeric antigen receptor comprising a CTLA-4 or PD- 1 transmembrane domain is functional and active in T cells. 6.9.1 CARS sing a CTLA-4 Transmembrane Domain CARs sing an extracellular domain (anti-HER2 scFV) that binds the antigen HER2 were generated. Specifically, the following CARs were generated: (i) HER-28TMC, comprising an Anti-HER2 scFV, a CD28 transmembrane domain, and a CD35; intracellular domain; (ii) HER-28TM28C, comprising an Anti-HER2 scFV, a CD28 transmembrane domain, and a CD28-CD3C intracellular domain; (iii) HER2-CTLA4TM28C, comprising an Anti-HER2 scFV, a CH2CH3 hinge, a CTLA-4 transmembrane domain (SEQ ID NO: 10), and a CD28-CD3C intracellular domain; and (iv) 1BBTM28C, comprising an Anti-HER2 scFV, a CD8 hinge, a 4-lBB transmembrane domain, and a CD28-CD3C intracellular .
The ability of human T cells to express the CARs described above was assessed. Pan T cells and naive Pan T cells were ed from buffy coat of donor sample blood by negative selection using a human Pan T isolation Kit 11 and human na'ive Pan T isolation kit, respectively (Miltenyi, Cambridge, MA). Isolated T cells were cultured in RPMI complete media in the presence of 10 ng/ml IL-7 for 11 days, and then transduced with lentivirus sing CAR constructs at MOI of 5.
Three days after transduction, CAR T cell phenotype was characterized staining the cells with a HER2-Fc fusion protein (R&D Systems, Minneapolis, MN), followed by staining with a onal goat anti-human IgG-Fc dy conjugated with FITC or APC) (Jackson ImmunoRessearch, West Grove, PA). On the same day, T cells were stimulated with HER2-Fc fusion protein at a gradient of concentrations ranging from 0.25 ug/ml to l ug/ml. Supernatant was collected 48 hours post-stimulation for cytometric beads array (CBA) analysis, to assess cytokine production by the T cells, using a customized CBA flex set (BD Biosciences, San Jose, CA). The cells from the culture after supernatant removal were stained for measurement of T cell activation surface markers CD69, 4-lBB, CD71, HLA-DR, and CD25 using anti-human onal antibodies with fluorochrome conjugates (BD Biosciences). Flow cytometric analysis for both CBA and surface markers was performed on a FACS Canto 11 machine and data were ed with FACSDiva software (BD Biosciences). The CBA data were analyzed with FCAP Assay re (Soft Flow Ltd., Pecs, y). Surface marker flow data were analyzed using FlowJo flow cytometry software (Tree Star, Ashland, OR).
As shown in Figure 1, three of the CARs generated, including the CAR having a CTLA-4 transmembrane domain, were highly expressed by the T cells. T cell activation surface markers CD69, 4-lBB, and HLA-DR each were upregulated upon CAR ligation, i.e., when the CAR T cells were ated with HER2-Fc fusion protein. In each case, the highest levels were observed in CAR T cells expressing the construct HER2-CTLA4TM28C.
As shown in Figures 2-4, two of the four sets of CAR T cells demonstrated cytokine tion in response to HER2 stimulation. Specifically, T cells expressing the CAR designated HER2-28TM28C and T cells expressing the CAR designated HER2-CTLA4TM28C ed the cytokines interleukin-2 (IL-2) (Figure 2), GM-CSF (Figure 3), and interferon- gamma (IFN—y) (Figure 4) in a dose-dependent manner in response to HER2 stimulation.
Surprisingly, T cells expressing a CAR comprising a transmembrane domain from a protein that normally transmits an inhibitory signal to immune system cells (i.e., CTLA-4 transmembrane domain) produced a much higher level of each cytokine as compared to T cells expressing each of the other CARs, including T cells expressing the CAR designated HER2-28TM28C. See Figures 2-4.
It further was examined r stimulation of T cells expressing the CARs described above with HER2 induces intracellular tumor necrosis factor-alpha (TNF-(x) production by the T cells. The CAR T cells were stimulated with HER2-Fc (l ug/ml) for 2 days in medium containing IL-2 (50 IU/ml). The HER2 ation was med two more times, separated by seven days each time. After the third stimulation, intracellular TNF-(x was examined by flow try. As shown in Figure 5, T cells expressing the CAR designated HER2-28TM28C, T cells expressing the CAR designated HER2-CTLA4TM28C, and T cells expressing the CAR designated HER2-28TME; produced TNF-u, with the highest amount of TNF-u produced by T cells expressing a CAR comprising a transmembrane domain from a protein that normally its an inhibitory signal to immune system cells (i.e., CTLA-4 transmembrane domain).
Finally, it was determined whether stimulation of T cells expressing the CARs described above with HER2 results in enrichment of the CAR T cell populations. CAR T cells expressing the CARs bed above were stimulated with HER2-Fc fusion protein. en days post- stimulation with HER2, CAR T cells were analyzed by flow cytometry, as described above.
Surprisingly, as shown in Figure 6, only CAR T cells expressing the CAR designated HER2- CTLA4TM28<‘; were enriched following HER2 stimulation. 6.9.2 CARS Comprising a PD-1 or CTLA-4 Transmembrane Domain This example demonstrates that a chimeric n receptor sing a CTLA-4 transmembrane domain or a PD-l transmembrane domain is fianctional and active in T cells.
CARs comprising an extracellular domain (anti-HER2 scFV) that binds the antigen HER2 were generated. Specifically, the following CARs were generated: (i) HER-PDlTM- CD28-CD3, sing an Anti-HER2 scFV, a CH2CH3 hinge, a PD-l transmembrane domain (SEQ ID NO: 1 l), and a CD28-CD3 intracellular domain; (ii) HER-CTLA4(l89)TM-4lBB-CD3, comprising an Anti-HER2 scFV, a CD28 hinge, a CTLA-4 transmembrane domain (SEQ ID NO: 10), and a 4-lBB-CD3 intracellular domain; (iii) lTM-4lBB-CD3, comprising an Anti-HER2 scFV, a CD28 hinge, a PD-l transmembrane domain (SEQ ID NO: 1 l), and a 4-lBB- CD3 intracellular domain; and (iv) HER2-CD28TM-CD28-CD3, comprising an Anti-HER2 scFV, a CD28 hinge, a CD28 transmembrane domain, and a CD28-CD3 intracellular domain.
Pan T cells and naive Pan T cells were isolated from buffy coat of donor sample blood by negative selection using a human Pan T isolation Kit II and human na'ive Pan T isolation kit, tively (Miltenyi, Cambridge, MA). ed T cells were cultured in RPMI complete media in the presence of 10 ng/ml IL-7 for 11 days, and then transduced with lentivirus expressing CAR constructs at MOI of 7.
Three days after transduction, CAR T cell phenotype was characterized ng the cells with a HER2-Fc fusion protein (R&D Systems, Minneapolis, MN), followed by staining with a polyclonal goat anti-human IgG-Fc antibody conjugated with FITC or APC) (Jackson ImmunoRessearch, West Grove, PA). On the same day, T cells were stimulated with HER2-Fc fusion protein at a gradient of concentrations ranging from 0.25 ug/ml to l ug/ml. Supernatant was collected 48 hours post-stimulation for cytometric beads array (CBA) analysis, to assess cytokine production by the T cells, using a ized CBA flex set (BD Biosciences, San Jose, CA). The cells from the culture after supernatant l were stained for measurement of T cell activation surface markers CD69, 4-lBB, CD71, HLA-DR, and CD25 using anti-human monoclonal antibodies with fluorochrome conjugates (BD Biosciences). Flow cytometric analysis for both CBA and surface markers was performed on a FACS Canto 11 machine and data were acquired with FACSDiva software (BD Biosciences). The CBA data were analyzed with FCAP Assay software (Soft Flow Ltd., Pecs, Hungary). Surface marker flow data were analyzed using FlowJo flow cytometry re (Tree Star, Ashland, OR).
As shown in Figure 7, each of the CARs generated were highly expressed by the T cells.
T cell activation surface markers CD69, CD71, and HLA-DR each were lated upon stimulation of the described CAR T cells with HER2. In each case, the observed levels of upregulation were highest in CAR T cells expressing CARs with either a PD-l or a CTLA-4 embrane domain.
As shown in Figures 8-9, the CAR T cells demonstrated ne production in response to HER2 stimulation. Specifically, T cells sing the CARs described above produced the cytokines IL-2 (Figure 8), TNF-(x (Figure 8), and IFN—y (Figure 8), GM-CSF (Figure 9), Granzyme B (Figure 9), and IL-l3 (Figure 9) in a dose-dependent manner in response to HER2 stimulation. In each case, T cells expressing CARs comprising a PD-l or CTLA-4 transmembrane domain exhibited the highest levels of cytokine production, with T cells expressing the CAR ated HER-PDlTM-CD28-CD3 consistently producing the highest levels of each cytokine (see Figs. 8 and 9).
Finally, it was determined whether stimulation of T cells sing the CARs described above with HER2 results in enrichment of the CAR T cell populations. CAR T cells expressing the CARs described above were stimulated with HER2-Fc fusion n. Eleven days post- stimulation with HER2, CAR T cells were analyzed by flow cytometry, as described above. As shown in Figure 10, CAR T cells expressing the CAR designated HER-PDlTM-CD28-CD3 were enriched following HER2 stimulation, with T cells expressing the other CARs described showing modest levels of increase in live cells over the initial cell number. 6.9.3 Conclusion In conclusion, generation of T cells expressing a CAR that ses a transmembrane domain from a protein that normally transmits an inhibitory signal to immune system cells has been demonstrated. Further, it has been shown that such CAR T cells possess surprising characteristics. In particular, such T cells (i) demonstrate elevated levels of cytokine production in response to stimulation with the antigen to which the extracellular domain of the CAR they s is directed, as compared to T cells expressing CARs that comprise a transmembrane domain from a n that normally transmits a stimulatory signal to immune system cells; and (ii) are enriched when cultured in the presence of the antigen to which the extracellular domain of the CAR they s is directed, s T cells expressing CARs that comprise a transmembrane domain from a protein that normally transmits a stimulatory signal to immune system cells are not enriched to the same extent, when stimulated with the n.
EQUIVALENTS The t disclosure is not to be limited in scope by the specific embodiments bed herein. Indeed, various modifications of the subject matter provided herein, in addition to those described, will become apparent to those skilled in the art from the foregoing description.
Such modifications are intended to fall within the scope of the appended claims.
Various publications, patents and patent applications are cited herein, the disclosures of which are incorporated by reference in their entireties.

Claims (82)

What we claim is:
1. A polypeptide comprising (i) a embrane domain from CTLA4 or PD-1, (ii) an intracellular domain of an endogenous protein expressed on the surface of lymphocytes that triggers the activation and/or proliferation of said lymphocytes, and (iii) an extracellular domain that binds to an antigen, n if the transmembrane domain is from CTLA4, the intracellular domain and extracellular domain of said ptide are not from CTLA4; and if the transmembrane domain is from PD-1, the intracellular domain and extracellular domain of said polypeptide are not from PD-1.
2. The polypeptide of claim 1, n said polypeptide is a ic antigen receptor (CAR).
3. The polypeptide of claim 1 or claim 2, wherein a T lymphocyte expressing said polypeptide is activated or stimulated to proliferate when said polypeptide binds to said antigen.
4. The polypeptide of any one of claims 1-3, wherein said polypeptide, when expressed on the surface of a T lymphocyte, directs the T lymphocyte to kill a cell expressing said antigen.
5. The polypeptide of any one of claims 1-4, wherein the CTLA4 transmembrane domain is the polypeptide sequence encoded by exon 3 of a human CTLA4 gene.
6. The polypeptide of any one of claims 1-4, wherein the CTLA4 transmembrane domain is or comprises the amino acid sequence of SEQ ID NO:1.
7. The polypeptide of any one of claims 1-4, wherein the CTLA4 transmembrane domain is or comprises the amino acid ce of SEQ ID NO:2.
8. The ptide of any one of claims 1-4, wherein the CTLA4 transmembrane domain is or comprises the amino acid sequence of SEQ ID NO:3.
9. The polypeptide of any one of claims 1-4, wherein the CTLA4 transmembrane domain is or ses the amino acid sequence of SEQ ID NO:4.
10. The polypeptide of any one of claims 1-4, wherein the CTLA4 transmembrane domain is or comprises the amino acid sequence of SEQ ID NO:5.
11. The polypeptide of any one of claims 1-4, wherein the PD-1 transmembrane domain is or comprises the polypeptide sequence of SEQ ID NO:6.
12. The polypeptide of any one of claims 1-4, wherein the PD-1 transmembrane domain is or comprises the polypeptide sequence of SEQ ID NO:7.
13. The polypeptide of any one of claims 1-4, wherein the PD-1 transmembrane domain is or ses the polypeptide sequence of SEQ ID NO:8
14. The polypeptide of any one of claims 1-13, wherein said extracellular domain comprises a receptor, or a n of a receptor, that binds to said antigen.
15. The polypeptide of any one of claims 1-13, wherein said extracellular domain is a receptor, or a portion of a receptor, that binds to said antigen.
16. The polypeptide of any one of claims 1-13, wherein said extracellular domain comprises an antibody or an antigen-binding portion thereof.
17. The polypeptide of any one of claims 1-13, wherein said extracellular domain is an antibody or an n-binding portion thereof.
18. The polypeptide of any one of claims 1-13, wherein said extracellular domain comprises a single-chain Fv .
19. The polypeptide of claim 18, wherein said single-chain Fv domain comprises a VL linked to VH by a flexible , wherein said VL and VH are from an antibody that binds said antigen.
20. The polypeptide of any one of claims 1-19, wherein said antigen is an antigen on a tumor cell.
21. The ptide of claim 20, wherein said tumor cell is a cell in a solid tumor.
22. The polypeptide of claim 20, wherein said tumor cell is a cell of a blood
23. The polypeptide of any one of claims 1-22, n said antigen is a tumorassociated antigen or a tumor-specific n.
24. The polypeptide of claim 23, wherein said tumor-associated antigen or tumorspecific antigen is Her2, te stem cell antigen (PSCA), alpha-fetoprotein (AFP), carcinoembryonic antigen (CEA), cancer antigen-125 (CA-125), CA19-9, calretinin, MUC-1, epithelial membrane protein (EMA), epithelial tumor antigen (ETA), tyrosinase, melanoma- associated antigen (MAGE), CD34, CD45, CD99, CD117, chromogranin, cytokeratin, desmin, glial fibrillary acidic protein , gross cystic disease fluid protein -15), HMB-45 antigen, n melan-A (melanoma antigen recognized by T cytes; MART-1), myo-D1, muscle-specific actin (MSA), neurofilament, neuron-specific enolase (NSE), placental alkaline phosphatase, synaptophysis, thyroglobulin, thyroid transcription factor-1, the dimeric form of the pyruvate kinase isoenzyme type M2 (tumor M2-PK), CD19, CD22, CD27, CD30, CD70, GD2 (ganglioside G2), II (epidermal growth factor variant III), sperm protein 17 (Sp17), mesothelin, PAP (prostatic acid phosphatase), prostein, TARP (T cell or gamma ate reading frame n), Trp-p8, STEAP1 (sixtransmembrane epithelial antigen of the prostate 1), an abnormal ras protein, an abnormal p53 protein, integrin αvβ3 (CD61), galactin, K-Ras (V-Ki-ras2 Kirsten rat sarcoma viral oncogene), or Ral-B.
25. The polypeptide of any one of claims 1-24, wherein said extracellular domain is joined to said embrane domain by a linker, spacer or hinge polypeptide sequence.
26. The polypeptide of claim 25, wherein said linker, spacer or hinge polypeptide sequence is from CD28.
27. The polypeptide of claim 25, wherein said linker, spacer or hinge polypeptide sequence is from CTLA4.
28. The polypeptide of claim 25, wherein said linker, spacer or hinge polypeptide is from PD-1.
29. The polypeptide of any one of claims 1-28, wherein said intracellular domain is an intracellular domain of a protein that is expressed on the surface of T cells and triggers activation and/or proliferation of said T cells.
30. The polypeptide of claim 29, wherein said intracellular domain is a CD3ζ intracellular signaling domain.
31. The polypeptide of claim 29, wherein said ellular domain is from a lymphocyte receptor chain, a 3 complex protein, an Fc receptor subunit or an IL-2 receptor subunit.
32. The polypeptide of any one of claims 1-31, wherein said polypeptide onally comprises one or more co-stimulatory domains.
33. The polypeptide of claim 32, wherein said one or more co-stimulatory s comprises one or more of a co-stimulatory CD27 polypeptide sequence, a costimulatory CD28 polypeptide sequence, a co-stimulatory OX40 (CD134) ptide sequence, a co-stimulatory 4-1BB (CD137) polypeptide sequence, or a co-stimulatory inducible T-cell costimulatory (ICOS) polypeptide sequence.
34. The polypeptide of any one of claims 1-33, wherein said polypeptide comprises, in order, from inus to C-terminus: (i) the extracellular domain that binds to an antigen; (ii) a CD28 or CTLA4 hinge polypeptide ce; (iii) the transmembrane domain from CTLA4 or PD-1; (iv) a costimulatory domain; and (v) a CD3ζ intracellular signaling domain.
35. The polypeptide of claim 34, wherein said polypeptide comprises, in order, from N-terminus to C-terminus: (i) the extracellular domain sing a single-chain Fv domain comprising a VL linked to VH by a flexible linker, wherein said VL and VH are from an dy that binds said antigen; (ii) a CD28 hinge ptide sequence; (iii) the transmembrane domain from CTLA4; (iv) a CD28 costimulatory domain; and (v) the CD3ζ intracellular signaling domain.
36. The polypeptide of claim 34, wherein said ptide comprises, in order, from N-terminus to C-terminus: (i) the extracellular domain comprising a single-chain Fv domain sing a VL linked to VH by a flexible , wherein said VL and VH are from an antibody that binds said antigen; (ii) a CTLA4 hinge polypeptide sequence; (iii) the transmembrane domain from CTLA4; (iv) a CD28 costimulatory domain; and (v) the CD3ζ intracellular signaling domain.
37. The polypeptide of claim 34, wherein said polypeptide comprises, in order, from N-terminus to C-terminus: (i) the extracellular domain comprising a single-chain Fv domain comprising a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen; (ii) a CD28 hinge polypeptide sequence; (iii) the transmembrane domain from PD-1; (iv) a CD28 costimulatory domain; and (v) the CD3ζ intracellular signaling domain.
38. The polypeptide of claim 34, wherein said polypeptide comprises, in order, from N-terminus to C-terminus: (i) the ellular domain comprising a single-chain Fv domain comprising a VL linked to VH by a flexible linker, n said VL and VH are from an antibody that binds said antigen; (ii) a CTLA4 hinge polypeptide sequence; (iii) the transmembrane domain from PD-1; (iv) a CD28 costimulatory domain; and (v) the CD3ζ intracellular signaling domain.
39. The polypeptide of claim 34, wherein said polypeptide comprises, in order, from N-terminus to C-terminus: (i) the extracellular domain comprising a single-chain Fv domain comprising a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen; (ii) a PD-1 hinge polypeptide sequence; (iii) the transmembrane domain from CTLA4; (iv) a CD28 costimulatory domain; and (v) the CD3ζ ellular signaling domain.
40. The polypeptide of claim 34, wherein said polypeptide comprises, in order, from N-terminus to C-terminus: (i) the extracellular domain comprising a single-chain Fv domain comprising a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen; (ii) a PD-1 hinge polypeptide ce; (iii) the transmembrane domain from PD-1; (iv) a CD28 costimulatory domain; and (v) the CD3ζ intracellular signaling .
41. A T lymphocyte comprising a membrane-bound polypeptide, wherein said ptide comprises (i) a transmembrane domain from CTLA4 or PD-1 (Programmed Cell Death 1), (ii) an intracellular domain of an endogenous protein expressed on the e of lymphocytes and that triggers the activation and/or proliferation of said lymphocytes, and (iii) an extracellular domain that binds to an antigen, wherein if the transmembrane domain is from CTLA4, the intracellular domain and extracellular domain of said polypeptide are not from CTLA4; and if the transmembrane domain is from PD-1, the intracellular domain and extracellular domain of said polypeptide are not from PD-1.
42. The T lymphocyte of claim 41, wherein said polypeptide is a ic antigen receptor (CAR).
43. The T lymphocyte of claim 41 or claim 42, wherein a T lymphocyte expressing said polypeptide is activated or ated to proliferate when said polypeptide binds to said antigen.
44. The T cyte of any one of claims 41-43, wherein said polypeptide, when expressed on the surface of the T lymphocyte, s the T lymphocyte to kill a cell expressing said antigen.
45. The T cyte of any one of claims 41-44, wherein the CTLA4 transmembrane domain is the polypeptide sequence encoded by exon 3 of a human CTLA4 gene.
46. The T lymphocyte of any one of claims 41-44, wherein the CTLA4 transmembrane domain is or comprises the amino acid sequence of SEQ ID NO:1.
47. The T cyte of any one of claims 41-44, wherein the CTLA4 transmembrane domain is or ses the amino acid sequence of SEQ ID NO:2.
48. The T lymphocyte of any one of claims 41-44, wherein the CTLA4 transmembrane domain is or comprises the amino acid sequence of SEQ ID NO:3.
49. The T lymphocyte of any one of claims 41-44, wherein the CTLA4 transmembrane domain is or comprises the amino acid ce of SEQ ID NO:4.
50. The T lymphocyte of any one of claims 41-44, wherein the CTLA4 transmembrane domain is or comprises the amino acid sequence of SEQ ID NO:5.
51. The T lymphocyte of any one of claims 41-44, wherein the PD-1 transmembrane domain is or comprises the polypeptide ce of SEQ ID NO:6.
52. The T lymphocyte of any one of claims 41-44, wherein the PD-1 transmembrane domain is or comprises the polypeptide sequence of SEQ ID NO:7.
53. The T lymphocyte of any one of claims 41-44, wherein the PD-1 transmembrane domain is or comprises the polypeptide sequence of SEQ ID NO:8.
54. The T lymphocyte of any one of claims 41-53, n said extracellular domain comprises a receptor, or a n of a receptor, that binds to said antigen.
55. The T lymphocyte of any one of claims 41-53, wherein said extracellular domain is a receptor, or a portion of a receptor, that binds to said antigen.
56. The T lymphocyte of any one of claims 41-53, n said extracellular domain comprises an antibody or an antigen-binding portion thereof.
57. The T lymphocyte of any one of claims 41-53, wherein said extracellular domain is an antibody or an antigen-binding portion thereof.
58. The T lymphocyte of any one of claims 41-53, wherein said extracellular domain comprises a single-chain Fv domain.
59. The T lymphocyte of claim 58, wherein said single-chain Fv domain comprises a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen.
60. The T lymphocyte of any one of claims 41-59, wherein said antigen is an antigen on a tumor cell.
61. The T cyte of claim 60, wherein said tumor cell is a cell in a solid tumor.
62. The T lymphocyte of claim 60, wherein said tumor cell is a cell of a blood cancer.
63. The T cyte of any one of claims 41-62, wherein said antigen is a tumor-associated antigen or a tumor-specific antigen.
64. The T lymphocyte of claim 63, wherein said tumor-associated antigen or tumor-specific antigen is Her2, prostate stem cell antigen (PSCA), alpha-fetoprotein (AFP), oembryonic antigen (CEA), cancer antigen-125 (CA-125), CA19-9, calretinin, MUC-1, epithelial membrane protein (EMA), epithelial tumor antigen (ETA), tyrosinase, melanomaassociated antigen (MAGE), CD34, CD45, CD99, CD117, chromogranin, cytokeratin, desmin, glial fibrillary acidic protein (GFAP), gross cystic disease fluid protein (GCDFP-15), HMB-45 antigen, protein melan-A (melanoma antigen recognized by T lymphocytes; MART-1), myo-D1, muscle-specific actin (MSA), neurofilament, -specific enolase (NSE), tal alkaline phosphatase, synaptophysis, thyroglobulin, thyroid transcription factor-1, the c form of the pyruvate kinase isoenzyme type M2 (tumor M2-PK), an abnormal ras protein, an abnormal p53 protein, CD19, CD22, CD27, CD30, CD70, GD2 (ganglioside G2), II (epidermal growth factor variant III), sperm protein 17 (Sp17), mesothelin, PAP (prostatic acid phosphatase), prostein, TARP (T cell receptor gamma alternate reading frame protein), Trp-p8, STEAP1 (six-transmembrane epithelial antigen of the prostate 1), an abnormal ras protein, an abnormal p53 protein, integrin αvβ3 , galactin, K-Ras (V-Ki-ras2 Kirsten rat sarcoma viral oncogene), or .
65. The T cyte of any one of claims 41-64, n said extracellular domain is joined to said transmembrane domain by a linker, spacer or hinge polypeptide sequence.
66. The T cyte of claim 65, wherein said linker, spacer or hinge polypeptide sequence is from CD28.
67. The T lymphocyte of claim 65, wherein said linker, spacer or hinge polypeptide sequence is from CTLA4.
68. The T lymphocyte of claim 65, wherein said linker, spacer or hinge polypeptide sequence is from PD-1.
69. The T lymphocyte of any one of claims 41-68, wherein said intracellular domain is an intracellular domain of a protein that is expressed on the surface of T cells and triggers activation and/or proliferation of said T cells.
70. The T lymphocyte of claim 69, wherein said intracellular domain is a CD3ζ intracellular signaling domain.
71. The T lymphocyte of claim 69, wherein said intracellular domain is from a lymphocyte or chain, a TCR/CD3 complex protein, an Fc receptor t or an IL-2 receptor subunit.
72. The T cyte of any one of claims 41-71, wherein said polypeptide additionally comprises one or more co-stimulatory domains.
73. The T lymphocyte of claim 72, wherein said one or more co-stimulatory domains comprises one or more of a co-stimulatory CD27 polypeptide sequence, a costimulatory CD28 polypeptide sequence, a co-stimulatory OX40 (CD134) polypeptide sequence, a co-stimulatory 4-1BB (CD137) ptide ce, or a co-stimulatory inducible T-cell costimulatory (ICOS) polypeptide sequence.
74. The T lymphocyte of any one of claims 41-73, wherein said ptide comprises, in order, from N-terminus to C-terminus: (i) the ellular domain that binds to an antigen; (ii) a CD28 or CTLA4 hinge polypeptide sequence; (iii) the transmembrane domain from CTLA4 or PD-1; (iv) a costimulatory domain; and (v) a CD3ζ ellular signaling domain.
75. The T lymphocyte of claim 74, wherein said polypeptide comprises, in order, from N-terminus to C-terminus: (i) the extracellular domain comprising a single-chain Fv domain comprising a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen; (ii) a CD28 hinge polypeptide sequence; (iii) the transmembrane domain from CTLA4; (iv) a CD28 ulatory domain; and (v) the CD3ζ intracellular signaling domain.
76. The T lymphocyte of claim 74, wherein said polypeptide comprises, in order, from N-terminus to C-terminus: (i) the extracellular domain sing a single-chain Fv domain comprising a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen; (ii) a CTLA4 hinge polypeptide ce; (iii) the transmembrane domain from CTLA4; (iv) a CD28 costimulatory domain; and (v) the CD3ζ intracellular signaling domain.
77. The T cyte of claim 74, wherein said polypeptide comprises, in order, from N-terminus to C-terminus: (i) the extracellular domain comprising a single-chain Fv domain comprising a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen; (ii) a CD28 hinge polypeptide sequence; (iii) the transmembrane domain from PD-1; (iv) a CD28 costimulatory ; and (v) the CD3ζ intracellular signaling domain.
78. The T lymphocyte of claim 74, wherein said polypeptide comprises, in order, from N-terminus to inus: (i) the extracellular domain comprising a single-chain Fv domain comprising a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen; (ii) a CTLA4 hinge polypeptide ce; (iii) the embrane domain from PD-1; (iv) a CD28 costimulatory domain; and (v) the CD3ζ intracellular signaling domain.
79. The T lymphocyte of claim 74, wherein said ptide comprises, in order, from inus to C-terminus: (i) the extracellular domain comprising a single-chain Fv domain comprising a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen; (ii) a PD-1 hinge polypeptide sequence; (iii) the transmembrane domain from CTLA4; (iv) a CD28 costimulatory domain; and (v) the CD3ζ intracellular ing domain.
80. The T lymphocyte of claim 74, wherein said polypeptide comprises, in order, from N-terminus to C-terminus: (i) the extracellular domain comprising a single-chain Fv domain comprising a VL linked to VH by a flexible linker, wherein said VL and VH are from an antibody that binds said antigen; (ii) a PD-1 hinge polypeptide sequence; (iii) the transmembrane domain from PD-1; (iv) a CD28 costimulatory domain; and (v) the CD3ζ ellular ing domain.
81. A polypeptide according to claim 1, substantially as herein described or exemplified.
82. A T-lymphocyte according to claim 41, ntially as herein described or exemplified.
NZ709253A 2012-12-20 2013-12-19 Chimeric antigen receptors NZ709253B2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
NZ749028A NZ749028B2 (en) 2012-12-20 2013-12-19 Chimeric antigen receptors

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US201261740113P 2012-12-20 2012-12-20
US61/740,113 2012-12-20
US201361779925P 2013-03-13 2013-03-13
US61/779,925 2013-03-13
PCT/US2013/076486 WO2014100385A1 (en) 2012-12-20 2013-12-19 Chimeric antigen receptors

Publications (2)

Publication Number Publication Date
NZ709253A NZ709253A (en) 2020-09-25
NZ709253B2 true NZ709253B2 (en) 2021-01-06

Family

ID=

Similar Documents

Publication Publication Date Title
US20220106404A1 (en) Chimeric antigen receptors
US11806365B2 (en) Modified T lymphocytes comprising a CD52 antibody-inducible caspase and methods of apoptosis
EP2953475A1 (en) Modified t lymphocytes having improved specificity
AU2017204617B2 (en) Chimeric antigen receptors
NZ709253B2 (en) Chimeric antigen receptors
NZ749028B2 (en) Chimeric antigen receptors
NZ712373B2 (en) Modified t lymphocytes
NZ751539B2 (en) Modified t lymphocytes