NZ702470B2 - Beta-hairpin peptidomimetics - Google Patents
Beta-hairpin peptidomimetics Download PDFInfo
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- NZ702470B2 NZ702470B2 NZ702470A NZ70247012A NZ702470B2 NZ 702470 B2 NZ702470 B2 NZ 702470B2 NZ 702470 A NZ702470 A NZ 702470A NZ 70247012 A NZ70247012 A NZ 70247012A NZ 702470 B2 NZ702470 B2 NZ 702470B2
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Abstract
Hairpin peptidomimetics of the general formula cyclo(-Tyr1-His2-Xaa3-Cys4-Ser5-Xaa6-DPro7-Xaa8-Arg9-Tyr10-Cys11-Tyr12-Xaa13-Xaa14-Xaa15-Pro16-), disulfide bond between Cys4 and Cys11, and pharmaceutically acceptable salts thereof, with Xaa3, Xaa6, Xaa8, Xaa13, Xaa14 and Xaa15 being amino acid residues of certain types which are defined in the description and the claims, have favorable pharmacological properties and can be used for preventing HIV infections in healthy individuals or for slowing and halting viral progression in infected patients; or where cancer is mediated or resulting from CXCR4 receptor activity; or where immunological diseases are mediated or resulting from CXCR4 receptor activity; or for treating immunosuppression; or during apheresis collections of peripheral blood stem cells and/or as agents to induce mobilization of stem cells to regulate tissue repair. These peptidomimetics can be manufactured by a process which is based on a mixed solid-and solution phase synthetic strategy. dues of certain types which are defined in the description and the claims, have favorable pharmacological properties and can be used for preventing HIV infections in healthy individuals or for slowing and halting viral progression in infected patients; or where cancer is mediated or resulting from CXCR4 receptor activity; or where immunological diseases are mediated or resulting from CXCR4 receptor activity; or for treating immunosuppression; or during apheresis collections of peripheral blood stem cells and/or as agents to induce mobilization of stem cells to regulate tissue repair. These peptidomimetics can be manufactured by a process which is based on a mixed solid-and solution phase synthetic strategy.
Description
BETA-HAIRPIN PEPTIDOMIMETICS
The present invention provides B-hairpin peptidomimetics which are having CXCR4
antagonizing activity.
The B-hairpin peptidomimetics of the ion are cyclo(—Tyr1-HisZ-Xaas-Cys4-Ser5-
Xaas—DPro7-Xaas—ArgQ—Tyrlo-Cysll-Tyrlz—Xaa13—Xaa14-Xaa15-Prole-), disulfide bond
between Cys4 and Cysll, and ceutically acceptable salts f, with Xaa3
being Tyr, Tyr(Me) as described herein below or Tyr(CFg) as described herein below,
Xaa6 being Ala or Acc as described herein below, Xaa8 being r) as described
herein below, Xaa13 being Gln or Glu, Xaa14 being Lys(iPr) as described herein below,
Xaa15 being DPro or DLys(iPr) as described herein below; with the proviso that if Xaa6 is
Ala, then Xaa15 is DLys(iPr) as described herein below.
In addition, the t invention provides an efficient synthetic process by which
these nds can, if desired, be made in parallel library-format. These B-hairpin
peptidomimetics have favorable pharmacological properties and, in addition, show
suitable plasma protein binding and appropriate clearance rates. Therefore they can
be used as active ingredients in low amounts for all kind of drug formulations, in
particular extended release drug formulations.
Many medically significant biological processes are mediated by signal transduction
that involves ines and their receptors in general and stromal derived factor 1
(SDF-l/ CXCL12) and its receptor CXCR4 in ular.
CXCR4 and its ligand SDF-l are involved in trafficking of B—cells, hematopoietic stem
cells (HSC) and hematopoietic progenitor cells (HPC). For instance, CXCR4 is expressed
on CD34+ cells and has been implicated in the process of CD34+ cell migration and
homing (S.M. Watt, S.P. Forde, Vox sanguinis 2008, 94, 18-32). It has also been shown
that the CXCR4 receptor plays an important role in the release of stem and progenitor
W0 82240
cells from the bone marrow to the peripheral blood (L.M. Pelus, S. Fukuda, Leukemia
2008, 22, 466—473). This activity of CXCR4 could be very important for efficient
sis collections of peripheral blood stem cells. Autologous peripheral blood cells
provide a rapid and sustained hematopoietic recovery following auto-transplantation
after the administration of high-dose herapy or radiotherapy in patients with
haematological malignancies and solid tumors (W.C. Liles et al., Blood 2003, 102,
2728—2730).
Recently, it has been demonstrated that SDF-l is locally up-regulated in animal
models of injury including focal ischemic stroke, global cerebral ischemia, myocardial
infarction and hind limb ischemia as well as being involved in recovery after
peripheral ischemia or following injury to the liver, kidney or lung (A.E. Ting, R.W.
Mays, M.R. Frey, W. Van’t Hof, S. Medicetty, R. Deans, Critical Reviews in
Oncology/Hematology 2008, 65, 81—93 and ture cited herein; F. Lin, K. Cordes, L.
Li, L. Hood, W.G. , S.J. Shankland et al., J. Am. Soc. Nephrol. 2003, 14, 1188-
1199; CC. Dos Santos, Intensive Care Med. 2008, 34, 619-630). These results t
that SDF-l may be a chemoattractant for CXCR4—positive stem cells for tissue and
organ repair/regeneration (M.Z. zak, M. Kucia, R. Reca, M. Majka, A. Janowska-
Wieczorek, J. Ratajczak, Leukemia 2004, 18, 29—40). Therefore, modulating the
SDF-l/CXCR4 axis by CXCR4 inhibitors should result in a significant therapeutic t
by using released stem cells to regulate tissue repair.
More recently, it has been shown that disrupting the CXCR4/SDF-1 axis by CXCR4
tors plays a crucial role in differential mobilization of progenitor cells like HPCs,
endothelial (EPCs) and stromal progenitor cells (SPCs) from the bone marrow (S.C.
Pitchford, R.C. Furze, C.P. Jones, A.M. Wegner, S.M. Rankin, Cell Stem Cell 2009, 4,
62). In addition, bone —derived CXCR4+ Very Small Embryonic-Like Stem Cells
(VSELs) were mobilized in patients with acute myocardial infarction indicating a
hypothetical reparatory mechanism (W. Wojakowski, M. Tendra, M. Kucia, E. Zuba-
Surma, E. Paczkowska, J. , M. Halasa, M. Krol, M. Kazmierski, P. Buszman, A.
W0 2013l182240
Ochala, J. Ratajczak, B. Machalinski, M.Z. Ratajczak, J. Am. Coll. l. 2009, 53, 1).
These findings may be exploited to provide efficacious stem cell therapy for tissue
regeneration.
Mesenchymal stem cells (MSC) are nonhematopoietic progenitor cells having the
capability of differentiating into tissues such as bone and cartilage (DJ. Prockop,
Science 1997, 276, 71). As a small proportion of MSCs strongly expresses onally
active CXCR4, modulation of the CXCR4/SDF-1 axis may mediate specific ion
and homing of these cells (R.F. Wynn, C.A. Hart, C. Corradi-Perini, L. O’Neill, C.A.
Evans, J.E. Wraith, LJ. Fairbaim, I. Bellantuono, Blood 2004, 104, 2643).
There is increasing evidence suggesting that ines in general and the SDF-
1/CXCR4 interaction in particular play a l role in enesis. Chemokines
induce angiogenesis directly by binding their cognate receptors on endothelial cells or
indirectly by promoting inflammatory cell infiltrates, which deliver other angiogenic
stimuli. A number of proinflammatory chemokines including interleukin 8 (IL-8),
growth—regulated oncogene, stromal cell—derived factor 1 (SDF-l), te
actic protein 1(MCP—1), eotaxin 1, and I-309 have been shown to act as direct
inducers of angiogenesis (X. Chen, J.A. Beutler, T.G. McCloud, A. Loehfelm, L. Yang,
H.F. Dong, O.Y. Chertov, R. Salcedo, J.J. Oppenheim, O.M. Howard. Clin. Cancer Res.
2003, 9(8), 3115-3123; R. Salcedo, JJ. Oppenheim, Microcircu/ation 2003, (3-4), 359-
370).
Recently obtained results show that the CXCR4 receptor is ed in the
chemotactic activity of cancer cells, such as breast cancer metastasis or in metastasis
of ovarian cancer (A. Muller, B. Homey, H. Soto, N. Ge, D. Catron, M.E. Buchanan, T.
Mc Clanahan, E. Murphey, W. Yuan, S.N. Wagner, J.L. Barrera, A. Mohar, E.
egui, A. Zlotnik, Nature 2001, 50, 410; J.M. Hall, K.S. Korach, Molecular
inology 2003, 17, 792-803), Non—Hodgin’s Lymphoma (F. Bertolini, C.
Dell’Agnola, P. Manusco, C. Rabascio, A. Burlini, S. Monestiroli, A. Gobbi, G. Pruneri,
W0 2013l182240
G. Martinelli, Cancer Research 2002, 62, 112), or lung cancer (T. Kijima, G.
Maulik, P.C. Ma, E.V. Tibaldi, R.E. Turner, B. Rollins, M. Sattler, B.E. Johnson, R. Salgia,
Cancer Research 2002, 62, 6304-6311), melanoma, prostate cancer, kidney ,
neuroblastomia, pancreatic cancer, multiple myeloma, chronic cytic leukemia,
hepatocellular carcinoma, colorectal carcinoma, trial cancer and germ cell
tumor (H. Tamamura et al., FEBS Letters 2003, 550, 79-83, cited ref.; Z. Wang, Q. Ma,
Q. Liu, H.Yu, L. Zhao, S. Shen, J. Yao, British Journal of Cancer 2008, 99, 1695; B. Sung,
S. Jhurani, K.S. Ahn, Y. Mastuo, T. Yi, S. Guha, M. Liu, B. Aggarwal, Cancer Res. 2008,
68, 8938; H. Liu, Z. Pan, A. Li, S. Fu, Y. Lei, H. Sun, M. Wu, W. Zhou, Cellular anal
Molecular logy, 2008, 5, 373; C. Rubie, O. Kollmar, V.O. Frick, M. Wagner, B.
Brittner, S. Graber, M.K. Schilling, Scandinavian Journal oflmmunology 2008, 68, 635;
S. Gelmini, M. Mangoni, F. Castiglioe, C. Beltrami, A. Pieralli, K.L. Andersson, M.
ni, G.|. Taddie, M. Serio, C. Orlando, Clin. Exp. Metastasis 2009, 26, 261; DC
Gilbert, |. Chandler, A. McIntyre, N.C. Goddard, R. Gabe, R.A. Huddart, J. y, J.
Pathol. 2009, 217, 94). ng the chemotactic activity with a CXCR4 inhibitor
should stop the migration of cancer cells and thus metastasis.
CXCR4 has also been implicated in the growth and eration of solid tumors and
leukemia/lymphoma. It was shown that activation of the CXCR4 receptor was critical
for the growth of both malignant neuronal and glial . Moreover, systemic
stration of the CXCR4 antagonist AMD3100 ts growth of intracranial
glioblastoma and medulloblastoma xenografts by increasing apoptosis and decreasing
the proliferation of tumor cells (J.B. Rubin, A.L Kung, R.S Klein, J.A. Chan, Y. Sun, K.
Schmidt, M.W. Kieran, A.D. Luster, R.A. Segal, Proc Natl Acad Sci U 5 A. 2003,
100(23),13513-13518; S. Barbero, R. Bonavia, A. Bajetto, C. Porcile, P. Pirani, J.L.
Ravetti, G.L. Zona, R. Spaziante, T. Florio, G. Schettini, Cancer Res. 2003, 63(8), 1969-
1974; T. Kijima, G. Maulik, P.C. Ma, E.V. Tibaldi, R.E. Turner, B. Rollins, M. Sattler,
B.E. n, R. Salgia. Cancer Res. 2002, 62(21), 6304-6311). CXCR4 inhibitors also
showed promising in vitro and in vivo efficacies in breast cancer, small cell lung
cancer, pancreatic cancer, gastric cancer, colorectal cancer, malignant melanoma,
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ovarian cancer, rhabdomyo-sarcoma, prostate cancer as well as chronic lymphocytic
leukemia, acute myelogenous leukemia, acute lymphoblastic leukemia, multiple
myeloma and Non-Hodgkin’s lymphoma (J.A. Burger, A. Peled, Leukemia 2009, 23,
43-52 and literature cited herein).
It is well established that ines are involved in a number of inflammatory
pathologies and some of them show a pivotal role in the modulation of osteoclast
development. Immunostaining for SDF-l (CXCL12) on synovial and bone tissue
biopsies from both rheumatoid arthritis (RA) and osteoarthritis (OA) samples have
revealed strong increases in the expression levels of chemokines under inflammatory
conditions (F. Grassi, S. Cristino, S. Toneguzzi, A. Piacentini, A. Facchini, G. Lisignoli, J.
Cell Physiol. 2004; 199(2), 244—251). It seems likely that the CXCR4 receptor plays an
ant role in inflammatory diseases such as rheumatoid tis, asthma,
multiple sclerosis, Alzheimer’s disease, Parkinson’s disease, atherosclerosis, or eye
diseases such as diabetic retinopathy and age related macular degeneration (K.R.
Shadidi et al., Scandinavian Journal of Immunology 2003, 57, 192-198; J.A. Gonzalo, J.
Immunol. 2000, 165, 499-508; S. Hatse et al., FEBS s 2002, 527, 255—262 and
cited references, A.T. Weeraratna, A. Kalehua, |. DeLeon, D. Bertak, G. Maher, M.S.
Wade, A. Lustig, K.G. Becker, W. Wood, D.G. , T.G. Beach, D.D. Taub, Exp. Cell
Res. 2007, 313, 450; M. Shimoji, F. Pagan, E.B. Healton, I. Mocchetti, Neurotox. Res.
2009, 16, 318; A. Zernecke, E. Shagdarsuren, C. Weber, Arteriosc/er. Thromb. Vasc.
Biol. 2008, 28, 1897; R. Lima e Silva, J. Shen, S.F. Hackett, S. Kachi, H. Akiyama et al.,
FASEB 2007, 21, 3219). The mediation of recruitment of immune cells to sites of
inflammation should be stopped by a CXCR4 inhibitor.
To date the available therapies for the treatment of HIV infections have been leading
to a able ement in symptoms and recovery from disease in infected
people. gh the highly active anti-retroviral therapy ) which involves a
combination of e transcriptase/ protease-inhibitor has ically improved
the clinical treatment of individuals with AIDS or HIV infection, there have still
remained several serious ms including multi drug resistance, significant adverse
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effects and high costs. Particularly desired are IV agents that block the HIV
infection at an early stage ofthe infection, such as the viral entry. It has recently been
recognized that for efficient entry into target cells, human immunodeficiency viruses
require the ine receptors CCR5 and CXCR4 as well as the primary receptor
CD4 (N. Levy, Engl. J. Med. 1996, 335, 1528—1530). Accordingly, an agent which could
block the CXCR4 chemokine receptors should prevent infections in healthy individuals
and slow or halt viral progression in infected patients (J. Cohen, e 1997, 275,
1261-1264).
Among the ent types of CXCR4 inhibitors (M. z, T.N.C. Wells, A.E.|.
oot, Receptors and Channels 2001, 7, 417-428; Y. Lavrovsky, Y.A. Ivanenkov,
K.V. Balakin, D.A. Medvedewa, P.V. Ivachtchenko, Mini Rev. Med. Chem. 2008, 11,
1075-1087), one emerging class is based on lly occurring cationic peptide
analogues derived from Polyphemusin II which have an antiparallel B-sheet structure,
and a B-hairpin that is maintained by two disulfide bridges (H. Nakashima, M.
Masuda, T. Murakami, Y. Koyanagi, A. Matsumoto, N. Fujii, N. Yamamoto,
crobial Agents and Chemoth. 1992, 36, 1249—1255; H. Tamamura, M. Kuroda,
M. Masuda, A. Otaka, S. Funakoshi, H. Nakashima, N. to, M. Waki, A.
Matsumotu, J.M. Lancelin, D. Kohda, S. Tate, F. Inagaki, N. Fujii, Biochim. Biophys.
Acta 1993, 209, 1163; WO 95/10534 A1).
Synthesis of structural analogs and structural studies by nuclear magnetic nce
(NMR) spectroscopy have shown that the cationic peptides adopt well defined B-
hairpin conformations, due to the constraining effect of one or two disulfide bridges
(H. Tamamura, M. Sugioka, Y. Odagaki, A. Omagari, Y. Kahn, S. Oishi, H. Nakashima, N.
Yamamoto, S.C. Peiper, N. Hamanaka, A. Otaka, N. Fujii, Bioorg. Med. Chem. Lett.
2001, 359-362). These results show that the B-hairpin structure plays an ant
role in CXCR4 antagonizing activity.
onal structural studies have indicated that the antagonizing activity can also be
influenced by modulating amphiphilic structure and the pharmacophore (H.
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ra, A. Omagari, K. Hiramatsu, K. Gotoh, T. Kanamoto, Y. Xu, E. Kodama, M.
Matsuoka, T. Hattori, N. Yamamoto, H. Nakashima, A. Otaka, N. Fujii, Bioorg. Med.
Chem. Lett. 2001, 11, 1897-1902; H. ra, A. Omagari, K. Hiramatsu, S. Oishi, H.
Habashita, T. Kanamoto, K. Gotoh, N. Yamamoto, H. Nakashima, A. Otaka N. Fujii,
Bioorg. Med. Chem. 2002, 10, 1417—1426; H. Tamamura, K. Hiramatsu, K. Miyamoto,
A. Omagari, S. Oishi, H. Nakashima, N. Yamamoto, Y. Kuroda, T. Nakagawa, A. Otaki,
N. Fujii, Bioorg. Med. Chem. Letters 2002, 12, 923-928).
The compounds cyclo(—Tyr1-HisZ-Xaa3-Cys4-Ser5-Xaa6-DPro7-Xaa8-Arg9—Tyr10-Cys11-
TyrlZ-Xaa13-Xaa14-Xaa15—Pr016—), disulfide bond between Cys4 and Cys“, of the
invention are cyclic B-hairpin omimetics exhibiting high CXCR4 antagonizing
activity, being useful for efficient apheresis collections of mobilized peripheral blood
stem cells and/or using these mobilized cells to regulate tissue repair, and/or having
anti-cancer activity, nflammatory activity and/or anti-HIV activity.
The cyclic B-hairpin conformation is d by the D-amino acid residue DPro7 and
the D—amino acid residue Xaa15. Further stabilization of the hairpin conformation is
achieved by the amino acid es Cys at positions 4 and 11, which, taken together,
form a disulfide bridge.
Surprisingly we have found that the introduction of the basic amino acid residues
Orn(iPr) at position 8, Lys(iPr) at position 14, supported by an optional introduction of
DLys(iPr) at position 15 of cyclo(—Tyr1—HisZ-Xaa3-Cys4—SerS-Xaae-DPro7—Xaa8-Arg9-
TyrlO-Cysll-Tyrlz-Xaa13-Xaa14—Xaa15-Pr016-), disulfide bond between Cys4 and Cys“,
result in pin peptidomimetics which have favorable pharmacological properties.
These properties, combined with suitable plasma protein binding and riate
clearance rates form a pharmacological e which allows these compounds to be
used as active ingredients in low amounts for all kind of drug formulations, in
particular extended release drug formulations.
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The B-hairpin peptidomimetics of the present invention are compounds of the
general formula
cyclo(—Tyrl-HisZ-Xaa3—Cys4-Ser5-Xaa6-DPro7-Xaa8-
Argg-Tyrlo-Cysll-Tyrn—Xaa13-Xaa14- XaalS-Pr016-),
disulfide bond between Cys4 and Cysll, and pharmaceutically acceptable salts
thereof,
wherein
Xaa3 is Tyr, Tyr(Me), i.e. (2$)amino-(4-methoxyphenyl)propionic acid, or
Tyr(CF3), i.e. (2$)amino-(4—trifluoromethoxyphenyl)propionic acid,
Xaa6 is Ala or Acc, the latter being l-aminocyclopropane-carboxylic acid,
Xaa8 is r), i.e. °’-isopropyl-2,5-diaminopentanoic acid,
Xaa13 is Gln or Glu,
Xaa14 is Lys(iPr), i.e. (2$)-N“’-isopropyl-2,6-diaminohexanoic acid,
Xaa15 is DPro, or DLys(iPr), i.e. (2R)-N‘”—isopropyl-2,6-diaminohexanoic acid,
with the proviso that if Xaa6 is Ala, then Xaa15 is DLys(iPr).
In a particular ment of the present invention the compound is
cyclo(—Tyrl-HisZ-Tyr3-Cys4-Ser5-Ala6-DP ro7-O rn(iPr)8-Arg9-Tyrlo-Cysll—Tyrlz-G|n13-
Lys(iPr)14-DLys(iPr)15—Pr016-), disulfide bond between Cys4 and Cysll, and
pharmaceutically acceptable salts thereof.
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In r particular embodiment of the present invention the compound is
cyclo(—Tyrl-HisZ—Tyrg—Cys4-SerS—Accs—DP ro7-Orn(iPr)8—Arg9-Tyr10—Cysll—Tyr12-G|n13-
Lys(iPr) 14-DProl‘r’-Pr016—), disulfide bond n Cys4 and Cys“, and pharmaceutically
acceptable salts thereof.
In accordance with the present invention these B-hairpin omimetics can be
prepared by a process which comprises
(a) coupling an appropriately onalized solid support with an appropriately
N-protected derivative of Pro which in the desired end-product is in position
16;
removing the N-protecting group from the product thus obtained;
coupling the product thus obtained with an appropriately N—protected
derivative of that amino acid which in the desired end-product is in position
, any functional group which may be present in said N-protected amino acid
derivative being likewise appropriately protected;
removing the N-protecting group from the product obtained in step (c);
effecting steps ntially corresponding to steps (c) and (d) using
appropriately N-protected derivatives of amino acids which in the d
oduct are in positions 14 to 1, any functional group(s) which may be
present in said ected amino acid derivatives being likewise
appropriately protected;
if desired, forming a disulfide bridge between the side—chains of the Cys
residues at position 4 and position 11; or alternatively, forming the aforesaid
linkage subsequent to step (i), as described herein below;
detaching the product thus obtained from the solid support;
cyclizing the product cleaved from the solid support;
removing any protecting groups present on functional groups of any s
of the chain of amino acid e; and
if desired, attaching one or several isopropyl groups
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(k) if d, converting the product thus obtained into a pharmaceutically
able salt or ting a pharmaceutically acceptable, or unacceptable,
salt thus ed into the corresponding free compound or into a different,
pharmaceutically acceptable, salt.
The B-hairpin peptidomimetics of this invention can be produced, for example, by
following a procedure comprising the synthesis of the linear e on resin whereas
the isopropyl bearing amino acid residue(s) Orn(iPr), Lys(iPr) or DLys(iPr) will be
incorporated as amino acid building block(s) being commercially available or
synthesized hand; or a procedure comprising the synthesis of a linear peptide
on resin and the derivatisation of the amino group—bearing side chains of amino acid
residues protected by acid labile protecting groups suitable to the Fmoc—based solid
phase peptide synthesis strategy by coupling isopropyl groups in solution at a very
late stage of the synthesis cascade; or following a ure sing a suitable
combination of the procedures described before.
The proper choice of the functionalized solid-support (i.e. solid support plus linker
molecule) and the site of cyclization play key roles in the synthesis process of the B-
n peptidomimetics of the invention.
The functionalized solid support is conveniently derived from polystyrene crosslinked
with, preferably 1-5%, divinylbenzene; polystyrene coated with polyethyleneglycol
spacers (Tentagel®),' and polyacrylamide resins (see also D. Obrecht, J.-M. Villalgordo,
”Solid— Supported Combinatorial and Parallel Synthesis of Small—Molecular-Weight
Compound Libraries”, Tetrahedron Organic Chemistry Series, Vol. 17, on,
Elsevier Science, 1998).
The solid support is onalized by means of a linker, Le. a bifunctional spacer
molecule which contains on one end an anchoring group for attachment to the solid
support and on the other end a selectively cleavable functional group used for the
W0 2013!182240
subsequent chemical transformations and cleavage procedures. For the purposes of
the present invention two types of linkers are used:
Type 1 linkers are designed to release the amide group under acidic conditions (H.
Rink, Tetrahedron Lett. 1987, 28, 3783-3790). Linkers of this kind form amides of the
carboxyl group of the amino acids; examples of resins functionalized by such linker
structures include 4-[(((2,4-dimethoxy-phenyl)Fmoc-aminomethyl)phenoxyacet
amido) ethyl] PS resin, 4-[(((2,4-dimethoxyphenyl)Fmoc-aminomethyl)
y-acetamido) aminomethyl] —4-methyl-benzydrylamine PS resin (Rink amide
MBHA PS Resin), and 2,4-dimethoxyphenyl)Fmoc-aminomethyl)
phenoxyacetamido) aminomethyl] benzhydrylamine PS-resin (Rink amide BHA PS
resin). Preferably, the support is derived from polystyrene crosslinked with, most
preferably 1—5%, divinylbenzene and functionalized by means of the
4-(((2,4-dimethoxy-phenyl)Fmoc-aminomethyl)phenoxyacetamido) linker.
Type 2 linkers are designed to eventually release the carboxyl group under acidic
conditions. Linkers of this kind form acid-labile esters with the carboxyl group of the
amino acids, usually acid-labile benzyl, benzhydryl and trityl ; examples of such
linker structures include 2-methoxyhydroxymethylphenoxy (SasrinR linker),
4-(2,4—dimethoxyphenyl-hydroxymethyl)-phenoxy (Rink linker), 4—(4-hydroxymethyl-
3-methoxyphenoxy)butyric acid (HMPB linker), trityl and 2-chlorotrityl. Preferably,
the support is derived from yrene crosslinked with, most preferably 1—5%,
lbenzene and functionalized by means of the 2—chlorotrityl linker.
When carried out as parallel array syntheses the processes of the invention can be
advantageously carried out as bed herein below but it will be immediately
nt to those skilled in the art how these procedures will have to be modified in
case it is desired to synthesize one single compound of the ion.
A number of reaction vessels equal to the total number of compounds to be
synthesized by the parallel method are loaded with 25 to 1000 mg, preferably 60 mg,
W0 2013!182240
of the appropriate functionalized solid support, preferably 1 to 3% cross-linked
polystyrene or Tentagel resin.
The solvent to be used must be e of swelling the resin and includes, but is not
limited to, dichloromethane (DCM), ylformamide (DMF), ylpyrrolidone
(NMP), dioxane, toluene, tetrahydrofuran (THF), ethanol (EtOH), trifluoroethanol
(TFE), isopropylalcohol and the like. Solvent mixtures containing as at least one
component a polar solvent (e. g. 20% TFE/DCM, 35% THF/NMP) are beneficial for
ensuring high reactivity and solvation of the resin-bound peptide chains (G.B. Fields,
C.G. Fields, J. Am. Chem. SOC. 1991, 113, 4202-4207).
With the pment of various linkers that release the C-terminal carboxylic acid
group under mild acidic conditions, not affecting acid—labile groups protecting
functional groups in the side chain(s), considerable sses have been made in the
sis of protected peptide nts. The 2—methoxyhydroxybenzylalcohol-
derived linker n® linker, Mergler et al., Tetrahedron Lett. 1988, 29 4005-4008) is
cleavable with diluted trifluoroacetic acid (0.5-1% TFA in DCM) and is stable to Fmoc
deprotection conditions during the peptide synthesis, Boc/tBu—based additional
protecting groups being compatible with this protection scheme. Other linkers which
are suitable for the process of the invention include the super acid labile
-dimethoxyphenyl-hydroxymethyl)-phenoxy linker (Rink linker, H. Rink,
Tetrahedron Lett. 1987, 28, 3787-3790), where the removal of the peptide requires
% acetic acid in DCM or 0.2% trifluoroacetic acid in DCM; the
4-(4-hydroxymethyl-3—methoxyphenoxy)butyric acid-derived linker (HMPB-linker,
Fl'orsheimer & Riniker, Peptides 1991, 1990 131) which is also cleaved with 1%
TFA/DCM in order to yield a peptide fragment ning all acid labile hain
protective groups; and, in addition, the 2-chlorotritylchloride linker (Barlos et al.,
Tetrahedron Lett. 1989, 30, 3943-3946), which allows the peptide detachment using a
mixture ofglacial acetic acid/trifluoroethanol/DCM (12:7) for 30 min.
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Suitable protecting groups for amino acids and, respectively, for their residues are,
for example,
- for the amino group (as is t e.g. also in the side-chain of lysine or
ornithine)
Cbz be nzyloxyca rbonyl
Boc tert-butyloxyca rbonyl
Fmoc renylmethoxycarbonyl
Alloc allyloxycarbonyl
Teoc trimethylsilylethoxyca rbonyl
ch trichloroethoxycarbonyl
Nps o-nitrophenylsulfonyl;
Trt triphenymethyl or trityl
idee (4,4-dimethyl-2,6-dioxocyclohexylidene)—3-
methylbutyl
- for the carboxyl group (as is present e. g. also in the side-chain of glutamic
acid) by conversion into esters with the alcohol components
tBu tert-butyl
Bn benzyl
Me methyl
Ph phenyl
Pac phenacyl
allyl
Tse trimethylsilylethyl
Tce trichloroethyl;
idee (4,4-dimethyl—2,6-dioxocyclohexylidene)—3-
methylbutyl
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- for the guanidino group (as is present e. g. in the hain of arginine)
Pmc 2,2,5,7,8—pentamethylchromansulfonyl
Ts tosyl (i. e. p-toluenesulfonyl)
Cbz be nzyloxyca rbonyl
be pentamethyldihydrobenzofuran-S-sulfonyl
- for the hydroxy group (as is t e. g. in the side-chain of serine)
tBu tert-butyl
Bn benzyl
Trt trityl
Alloc allyloxycarbonyl
- and for the mercapto group (as is present e. g. in the
side-chain of cysteine)
Acm acetamidomethyl
tBu tert-butyl
Bn benzyl
Trt trityl
Mtr 4-methoxytrityl.
The 9-fluorenylmethoxycarbonyl (Fmoc) —protected amino acid derivatives are
ably used as the building blocks for the uction of the B-hairpin loop
mimetics of the invention. For the deprotection, i. e. cleaving off of the Fmoc group,
% piperidine in DMF or 2% DBU/2% piperidine in DMF can be used.
The linkage of isopropyl groups to amino group—bearing side chains of
9-fluorenylmethoxycarbonyl (Fmoc) -protected amino acid derivatives to form
W0 2013!182240
isopropylated amino group—bearing side chains of (Fmoc) -protected amino acid
derivatives is known in the art. The procedure for introducing an isopropyl group can
be accomplished e.g. by reductive alkylation e.g. treatment ofthe amino group ofthe
amino group—bearing side chain of an amino acid building block like e.g. Orn with
acetone in the presence of a suitable reducing agent like e.g. sodium
triacetoxyborohydride. Protecting groups like e.g Boc suitable for ispropylated amino
group—bearing side chains of (Fmoc) -protected amino acid derivatives can be
introduced by subsequent reaction with di-tert-butyl onate in the presence of a
base such as sodium bicarbonate.
The quantity of the reactant, i.e. of the amino acid derivative, is usually 1 to 20
equivalents based on the milliequivalents per gram (meq/g) loading of the
functionalized solid support (typically 0.1 to 2.85 meq/g for polystyrene resins)
originally weighed into the on tube. Additional lents of reactants can be
used, if ed, to drive the reaction to completion in a reasonable time. The
preferred workstations (without, however, being limited thereto) are rce's
Combi—chem station, Protein Technologies’ Symphony and MultiSyn Tech's—Syro
sizer, the latter additionally equipped with a transfer unit and a reservoir box
during the process of detachment of the fully ted linear peptide from the solid
support. All synthesizers are able to provide a controlled environment, for example,
reactions can be accomplished at temperatures different from room temperature as
well as under inert gas here, if desired.
Amide bond formation requires the activation of the oc-carboxyl group for the
ion step. When this activation is being carried out by means of the commonly
used carbodiimides such as dicyclohexylcarbodiimide (DCC, Sheehan & Hess, J. Am.
Chem. Soc. 1955, 77, 1067-1068) or diisopropylcarbodiimide (DIC, Sarantakis et al
m. Biophys. Res. Commun. 1976, 73, 336-342), the resulting dicyclohexylurea
and, tively, ropylurea is insoluble and, respectively, soluble in the
solvents generally used. In a variation of the carbodiimide method
1-hydroxybenzotriazole (HOBt, Konig & Geiger, Chem. Ber. 1970, 103, 788-798) is
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included as an additive to the coupling mixture. HOBt prevents dehydration,
suppresses racemization of the activated amino acids and acts as a catalyst to
improve the sluggish coupling reactions. Certain phosphonium reagents have been
used as direct coupling reagents, such as benzotriazol-l-yl—oxy-tris—(dimethyl-
amino)—phosphonium uorophosphate (BOP, Castro et al., Tetrahedron Lett.
1975, 14, 222; Synthesis 1976, 751-752), or benzotriazol-l-yl-
oxy-tris—pyrrolidino-phosphonium hexaflurophoshate (Py—BOP, Coste et al.,
Tetrahedron Lett. 1990, 31, 205-208), or 2-(1H-benzotriazol1—yl-)
1,1,3,3-tetramethyluronium tetrafluoroborate (TBTU), or hexafluorophosphate
(HBTU, Knorr et al., Tetrahedron Lett. 1989, 30, 930); these phosphonium
reagents are also suitable for in situ formation of HOBt esters with the protected
amino acid derivatives. More recently diphenoxyphosphoryl azide (DPPA) or
O-(7-aza-benzotriazol—l-yl)-N,N,N’,N'—tetramethyluronium tetrafluoroborate (TATU)
or O—(7-aza—benzotriazol-l—yl)—N,N,N’,N’-tetramethyluronium hexafluorophosphate
(HATU)/7-azahydroxy benzotriazole (HOAt, o et al., Tetrahedron Lett. 1994,
, 2279-2281) or -(6-Ch|oro-1H-benzotriazol-l-yl-)-N,N,N’,N’-1,1,3,3-tetramethyl-
uronium tetrafluoroborate (TCTU), or hexafluorophosphate (HCTU, Marder, Shivo and
Albericio: HCTU and TCTU: New Coupling Reagents: pment and Industrial
Applications, Poster Presentation, Gordon Conference February 2002) have also been
used as coupling ts as well as 1,1,3,3-bis(tetramethylene)chlorouronium
hexafluoro-phosphate (PyClU) ally for coupling N-methylated amino acids (J.
Coste, E. Frérot, P. Jouin, B. Castro, Tetrahedron Lett. 1991, 32, 1967) or
pentafluorophenyl diphenyl—phosphinate (S. Chen, J. Xu, Tetrahedron Lett. 1991, 32,
6711)
Due to the fact that near-quantitative coupling ons are essential, it is desirable
to have experimental evidence for completion of the reactions. The ninhydrin test
(Kaiser et al., Anal. Biochemistry 1970, 34, 595), where a positive colorimetric
response to an aliquot of bound peptide indicates qualitatively the presence of
the y amine, can easily and quickly be performed after each coupling step.
W0 2013!182240
Fmoc try allows the ophotometric detection of the Fmoc phore
when it is released with the base (Meienhofer et al., Int. J. Peptide Protein Res. 1979,
13, 35—42).
The bound intermediate within each on vessel is washed free of excess of
retained ts, of solvents, and of by-products by repetitive exposure to pure
solvent(s) by one of the two following methods:
1) The on vessels are filled with solvent (preferably 5 mL), agitated for 5 to
300 minutes, preferably 15 minutes, and drained to expel the solvent;
2) The reaction vessels are filled with solvent (preferably 5 mL) and drained into a
receiving vessel such as a test tube or vial.
Both of the above washing procedures are repeated up to about 50 times (preferably
about 10 times), monitoring the efficiency of reagent, solvent, and by-product
removal by methods such as TLC, GC, or inspection ofthe washings.
The above described procedure of reacting the resin-bound compound with ts
within the reaction tubes followed by removal of excess reagents, by-products, and
solvents is repeated with each successive transformation until the final resin-bound
fully protected linear peptide has been obtained.
Before this fully protected linear e is detached from the solid support, a
disulfide bridge between Cys4 and Cys11 can be formed.
For the formation of a disulfide bridge preferably a solution of 10 lents of
iodine solution is applied in DMF or in a mixture of CHZCIZ/MeOH for 1.5 h which is
repeated for another 3 h with a fresh iodine solution after filtering of the iodine
solution, or in a mixture of DMSO and acetic acid solution, buffered with 5% NaHC03
to pH 5—6 for 4h, or in water after adjusting to pH 8 with ammonium hydroxide
solution by stirring for 24 h, or in a solution of NMP and tri—n-butylphosphine
(preferably 50 eq.).
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Alternatively, the formation of the disulfide bridge between Cys4 and Cys11 can be
carried out subsequent to the work—up method 2), as described herein below, by
stirring the crude fully deprotected and cyclized peptide for 24h in water containing
DMSO up to 15% by volume, buffered with 5% NaHC03 to pH 5—6, or buffered with
ammonium acetate to pH 7—8, or adjusted with ammonium ide to pH 8.
Following evaporation to dryness cyclo(-Tyr1-HisZ—Xaa3-Cys4-Ser5-Xaa6-DPro7-
Xaa8—ArgQ-Tyrlo—Cysll—Tyrlz-Xaal3—Xaal4—Xaa15—Pr016—), disulfide bond between Cys4 and
Cysll, is obtained as end-product.
Detachment of the fully protected linear peptide from the solid support is achieved
by exposing the loaded resin with a solution of the reagent used for cleavage
(preferably 3 to 5 mL). Temperature control, agitation, and reaction monitoring are
implemented as described above. Via a transfer-unit the reaction vessels are
connected with a reservoir box containing reservoir tubes to ently collect the
cleaved product solutions. The resins remaining in the on vessels are then
washed 2 to 5 times as above with 3 to 5 mL of an riate solvent to extract
(wash out) as much of the detached products as possible. The t solutions thus
obtained are combined, taking care to avoid cross-mixing. The individual
solutions/extracts are then manipulated as needed to isolate the final compounds.
Typical manipulations include, but are not limited to, evaporation, tration,
/liquid extraction, acidification, basification, neutralization or additional
reactions in solution.
The solutions containing fully protected linear peptide tives which have been
cleaved off from the solid support and lized with a base, are evaporated.
Cyclization is then effected in solution using solvents such as DCM, DMF, dioxane, THF
and the like. Various coupling reagents which were mentioned earlier can be used for
the cyclization. The duration of the cyclization is about 6—48h, ably about 16h.
The progress of the reaction is ed, e. g. by RP-HPLC se Phase High
Performance Liquid Chromatography). Then the solvent is removed by evaporation,
the fully protected cyclic e derivative is dissolved in a solvent which is not
W0 2013!182240 2012/060766
miscible with water, such as DCM, and the solution is extracted with water or a
mixture of water-miscible solvents, in order to remove any excess of the coupling
reagent.
Finally, the fully protected e derivative is treated with 95% TFA, 2.5% H20, 2.5%
TIS or another combination of gers for effecting the cleavage of protecting
groups. The cleavage reaction time is commonly 30 minutes to 12 h, preferably about
2.5 h.
Alternatively, the detachment and complete deprotection of the fully protected
peptide from the solid support can be achieved ly in glass vessels.
After full ection, for example, the ing methods can be used for further
work—up:
l) The volatiles are evaporated to dryness and the crude peptide is dissolved in
% AcOH in water and extracted with isopropyl ether or other solvents which are
suitable therefor. The aqueous layer is collected and evaporated to dryness, and the
fully deprotected cyclic peptide, cyclo(—Tyr1—HisZ-Xaa3-Cys4—SerS-Xaae-DPro7—Xaa8-Arg9-
TyrlO—Cysll-Tyrlz-Xaa13-Xaa14—Xaa15-Pr016-), disulfide bond between Cys4 and Cysll,is
obtained as final t;
2) The deprotection mixture is concentrated under vacuum. Following
precipitation of the fully deprotected peptide in diethylether at preferably 0 °C the
solid is washed up to about 10 times, preferably 3 times, dried, and the fully
deprotected cyclic peptide, cyclo(-Tyr1-HisZ-Xaa3-Cys4-Ser5-Xaa6-DPro7-Xaa8-Arg9-
TyrlO-Cysll-Tyrlz-Xaa13-Xaa14—Xaa15-Pr016-), disulfide bond n Cys4 and Cysll, is
obtained as final product, if a disulfide bond between Cys4 and Cys11 has been formed
on solid support as described herein above.
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If the above mentioned orthogonal protecting group strategy for introducing one or
more isopropyl groups in on has been followed, then all amino groups of amino
acid residues formerly protected by acid labile protecting groups have been liberated
at this stage of the synthesis cascade. Thus, it is possible, if desired, to couple an
isopropyl group. This ng can be accomplished by applying e.g. a reductive
alkylation using acetone in the presence of a suitable reducing agent like e.g. sodium
cyano borhydride. Thus, for example, the peptide is dissolved in MeOH (4.4 mM)
containing acetic acid (0.2 M). After adding an excess of acetone (780 eq) the reaction
mixture is completed with a solution of sodium cyano borhydride in MeOH (0.6 M;
1.3 eq per isopropyl group desired to be introduced) and vigorously shaken at room
ature. Following completion of the conversion monitored by LC-MS, water is
added and the solvents are evaporated.
As mentioned earlier, it is thereafter possible, if desired, to convert the fully
ected cyclic product thus ed into a pharmaceutically acceptable salt or
to convert a pharmaceutically acceptable, or unacceptable, salt thus obtained into
the corresponding free compound, or into a different, pharmaceutically acceptable,
salt. Any of these ions can be carried out by methods well known in the art.
The B-hairpin peptidomimetics of the invention can be used in a wide range of
applications in order to prevent HIV infections in healthy individuals and slow or halt
viral progression in infected ts, or where cancer is mediated or resulting from
the CXCR4 or activity, or where immunological diseases are mediated or
resulting from CXCR4 receptor activity; or these B-hairpin peptidomimetics can be
used to treat immunosuppression, or they can be used during apheresis collections of
peripheral blood stem cells and/or as agents to induce zation of stem cells to
regulate tissue repair.
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The B-hairpin peptidomimetics of the invention may be stered per se or may
be applied as an appropriate ation together with rs, diluents or excipients
well known in the art.
When used to treat or prevent HIV infections or cancer such as breast cancer, brain
cancer, prostate cancer, heptatocellular carcinoma, colorectal cancer, lung cancer,
kidney cancer, neuroblastoma, ovarian cancer, endometrial cancer, germ cell tumor,
eye cancer, multiple myeloma, pancreatic cancer, gastric cancer,
rhabdomyo-sarcoma, melanoma, chronic lyphomphocytic leukemia, acute
myelogenous leukemia, acute blastic leukemia, multiple myeloma and
Non-Hodgkin’s lymphoma; metastasis, angiogenesis, and haematopoetic tissues; or
inflammatory ers such as asthma, allergic rhinitis, hypersensitivity lung
diseases, hypersensitivity pneumonitis, eosinophilic pneumonias, delayed-type
hypersensitivity, interstitial lung disease (ILD), idiopathic pulmonary fibrosis, ILD
associated with rheumatoid arthritis, systemic lupus erythematosus, ankylosing
itis, systemic sclerosis, Sjogren‘s me, systemic laxis or
hypersensitivity responses, drug allergies, rheumatoid arthritis, psoriatic arthritis,
multiple sclerosis, Alzheimer’s disease, Parkinson’s disease, atherosclerosis,
myasthenia , juvenile onset diabetes, glomerulonephritis, autoimmune
throiditis, graft ion, including allograft rejection or graft-versus-host disease,
inflammatory bowel diseases and inflammatory dermatoses; or to treat eye diseases
like ma, diabethic pathy and age related macular degeneration; or to
treat focal ischemic stroke, global cerebral ischemia, myocardial infarction, hind limb
ischemia or peripheral ischemia; or to treat injury of the liver, kidney or lung; or to
treat immunosuppression, including immunosuppression induced by chemotherapy,
ion therapy or graft/transplantation rejection, the B-hairpin peptidomimetics of
the invention can be administered , as mixtures of several B-hairpin
peptidomimetics, in combination with other anti-HIV agents, or antimicrobial agents
or anti-cancer agents or anti-inflammatory agents, or in combination with other
W0 2013!182240
pharmaceutically active . The B-hairpin peptidomimetics of the invention can
be administered per se or as pharmaceutical compositions.
Pharmaceutical compositions comprising B—hairpin peptidomimetics of the invention
may be manufactured by means of conventional mixing, dissolving, granulating,
coated tablet-making, levigating, emulsifying, encapsulating, entrapping or
|yophi|izing processes. Pharmaceutical compositions may be formulated in
tional manner using one or more logically acceptable carriers, diluents,
ents or auxilliaries which facilitate processing of the active B-hairpin
peptidomimetics into preparations which can be used pharmaceutically. Proper
formulation s upon the method of administration chosen.
For topical administration the B-hairpin omimetics of the invention may be
formulated as solutions, gels, ointments, creams, suspensions, powders etc. as are
well-known in the art.
Systemic formulations include those designed for administration by injection, e.g.
subcutaneous, intravenous, intramuscular, intrathecal or intraperitoneal ion, as
well as those designed for transdermal, transmucosal, oral or ary
administration.
For injections, the B—hairpin peptidomimetics of the invention may be formulated in
adequate ons, preferably in physiologically compatible buffers such as Hank’s
solution, Ringer’s on, or physiological saline buffer. The solutions may contain
formulatory agents such as suspending, stabilizing and/or dispersing agents.
Alternatively, the B-hairpin peptidomimetics of the invention may be in powder form
for combination with a suitable vehicle, e.g., sterile pyrogen—free water, before use.
For transmucosal administration, penetrants appropriate to the r to be
permeated are used in the formulation as known in the art.
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For oral administration, the compounds can be readily formulated by combining the
active B—hairpin peptidomimetics of the invention with pharmaceutically acceptable
carriers well known in the art. Such carriers enable the B-hairpin peptidomimetics of
the invention to be formulated as tablets, pills, dragees, es, liquids, gels, syrups,
slurries, suspensions, powders etc., for oral ingestion by a patient to be treated. For
oral formulations such as, for e, powders, capsules and tablets, suitable
excipients include fillers such as sugars, such as lactose, sucrose, mannitol and
sorbitol; cellulose preparations such as maize starch, wheat starch, rice starch, potato
, gelatin, gum tragacanth, methyl cellulose, hydroxypropylmethyl cellulose,
sodium carboxymethylcellulose, and/or polyvinylpyrrolidone (PVP); granulating
agents; and binding agents. If desired, egrating agents may be added, such as
cross—linked polyvinylpyrrolidones, agar, or alginic acid or a salt thereof, such as
sodium alginate. If desired, solid dosage forms may be sugar-coated or enteric-coated
using standard ques.
For oral liquid preparations such as, for example, sions, elixirs and solutions,
suitable carriers, ents or ts include water, glycols, oils, alcohols, etc. In
addition, flavoring agents, preservatives, coloring agents and the like may be added.
For buccal stration, the composition may take the form of tablets, lozenges,
etc. formulated as usual.
The compounds may also be formulated in rectal or vaginal compositions such as
suppositories together with appropriate suppository bases such as cocoa butter or
other glycerides.
In addition to the formulations bed above, the B-hairpin peptidomimetics of the
invention may also be formulated as depot preparations. Such long acting
formulations may be administered by implantation (e.g. subcutaneously or
intramuscularly) or by intramuscular injection. For the manufacture of such depot
W0 82240
preparations the B-hairpin peptidomimetics of the invention may be formulated with
suitable polymeric or hydrophobic materials (e.g. as an on in an acceptable oil)
or ion exchange resins, or as sparingly e salts.
In addition, other pharmaceutical delivery systems may be employed such as
liposomes and emulsions well known in the art. Certain organic ts such as
dimethylsulfoxide may also be employed. Additionally, the B-hairpin peptidomimetics
of the ion may be delivered using a sustained—release system, such as
semipermeable matrices of solid polymers containing the therapeutic agent (e.g. for
coated stents). Various sustained-release materials have been ished and are
well known by those skilled in the art. Sustained-release capsules may, depending on
their chemical nature, release the compounds for a few weeks up to over 100 days.
Depending on the chemical nature and the biological stability of the therapeutic
agent, additional strategies for protein stabilization may be employed.
As the pin peptidomimetics ofthe ion contain charged residues, they may
be included in any of the above described formulations as such or as
pharmaceutically acceptable salts. Pharmaceutically acceptable salts tend to be more
soluble in aqueous and other protic solvents than are the corresponding free forms.
Particluarly suitable pharmaceutically acceptable salts include salts with carboxylic,
onic, sulfonic and sulfamic acids, e.g. acetic acid, propionic acid, octanoic acid,
decanoic acid, dodecanoic acid, glycolic acid, lactic acid, fumaric acid, succinic acid,
adipic acid, pimelic acid, suberic acid, azelaic acid, malic acid, tartaric acid, citric acid,
amino acids, such as glutamic acid or aspartic acid, maleic acid, hydroxymaleic acid,
maleic acid, cyclohexanecarboxylic acid, adamantanecarboxylic acid, benzoic
acid, lic acid, 4-aminosalicylic acid, phthalic acid, phenylacetic acid, mandelic
acid, cinnamic acid, methane- or -sulfonic acid, 2-hydroxyethanesulfonic acid,
ethane—1,2-disulfonic acid, benzenesulfonic acid, 2—naphthalenesulfonic acid, 1,5-
naphthalenedisulfonic acid, 2-, 3- or 4-methyl-benzenesulfonic acid, methylsulfuric
acid, ethylsulfuric acid, dodecylsulfuric acid, N-cyclohexylsulfamic acid, N—methy|—, N-
ethyl- or yl-sulfamic acid, and other organic protonic acids, such as ascorbic
W0 2013!182240
acid. Suitable inorganic acids are for e hydrohalic acids, such as hydrochloric
acid, sulfuric acid and phosphoric acid.
The B-hairpin peptidomimetics of the invention, or compositions f, will
generally be used in an amount effective to achieve the intended purpose. It is to be
understood that the amount used will depend on a particular ation.
For topical stration to treat or prevent HIV infections a therapeutically
effective dose can be determined using, for example, the in vitro assays provided in
the examples. The ent may be applied while the HIV infection is visible, or even
when it is not visible. An ordinary skilled expert will be able to determine
therapeutically effective amounts to treat topical HIV infections without undue
experimentation.
For systemic administration, a eutically effective dose can be estimated initially
from in vitro assays. For example, a dose can be formulated in animal models to
achieve a circulating B—hairpin peptidomimetic concentration range that includes the
IC50 as determined in the cell culture. Such information can be used to more
accurately determine useful doses in humans.
Initial dosages can also be determined from in vivo data, e.g. animal , using
techniques that are well known in the art. One having ordinary skill in the art could
readily optimize administration to humans based on animal data.
Dosage amounts for applications as anti-HIV agents may be adjusted individually to
provide plasma levels of the B-hairpin peptidomimetics of the ion which are
sufficient to maintain the therapeutic effect. Therapeutically effective serum levels
may be achieved by administering multiple doses each day.
In cases of local administration or selective , the effective local concentration
of the B-hairpin peptidomimetics of the invention may not be related to plasma
W0 2013!182240
concentration. One having the ordinary skill in the art will be able to optimize
therapeutically effective local dosages without undue experimentation.
The amount of B-hairpin peptidomimetics stered will, of course, be dependent
on the subject being d, on the subject’s weight, the ty of the affliction,
the manner of administration and the judgement ofthe prescribing ian.
The anti-HIV therapy may be repeated intermittently while infections are detectable
or even when they are not detectable. The therapy may be provided alone or in
combination with other drugs, such as for example other anti-HIV agents or anti-
cancer agents, or other antimicrobial agents.
Normally, a therapeutically effective dose ofthe B-hairpin peptidomimetics described
herein will provide therapeutic benefit without causing ntial toxicity.
Toxicity of the B-hairpin peptidomimetics of the invention can be determined by
standard ceutical procedures in cell cultures or experimental animals, e.g., by
determining the LD50 (the dose lethal to 50% of the population) or the LD100 (the dose
lethal to 100% of the population). The dose ratio n toxic and therapeutic
effect is the therapeutic index. Compounds which exhibit high therapeutic indices are
preferred. The data obtained from these cell culture assays and animal studies can be
used in formulating a dosage range that is not toxic for use in humans. The dosage of
the B—hairpin omimetics of the ion lies preferably within a range of
circulating concentrations that include the effective dose with little or no toxicity. The
dosage may vary within the range depending upon the dosage form employed and
the route of administration utilized. The exact formulation, route of administration
and dose can be chosen by the individual physician in view of the patient's condition
(see, e.g. Fingl et al. 1975, In: The Pharmacological Basis of Therapeutics, Ch.1, p.1).
The present invention may also include nds, which are identical to the
compounds of the general formula cyclo(—Tyr1—HisZ—Xaa3—Cys4-Ser5—Xaa6—DPro7—Xaa8—
W0 2013!182240
Arg9-Tyrlo-Cysll-Tyrlz-Xaa13-Xaa14-Xaa15-Prol6-), disulfide bond n Cys4 and
Cysll, except that one or more atoms are replaced by an atom having an atomic mass
number or mass different from the atomic mass number or mass usually found in
nature, e.g. compounds enriched in 2H (D), 3H, 11C, 14C, 129| etc. These isotopic analogs
and their pharmaceutical salts and ations are considered useful agents in the
therapy and/or stic, for example, but not limited to, where a fine-tuning of in
vivo half—life time could lead to an optimized dosage regimen.
The following Examples illustrate the present invention but are not to be construed as
limiting its scope in any way.
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Examples
1. Peptide Synthesis
Coupling of the first protected amino acid residue to the resin
1 g (1.4 mMol) 2—chlorotritylchloride resin (1.4 mMol/g; 100 — 200 mesh,
copoly(styrene-1% DVB) polymer matrix; Barlos et al. Tetrahedron Lett. 1989, 30,
946) was filled into a dried flask. The resin was suspended in CHZCIZ (5 mL) and
allowed to swell at room temperature under constant shaking for 30 min. A solution
of 0.98 mMol (0.7 eq) of the first suitably protected amino acid residue (see below) in
CHZCIZ (5 mL) mixed with 960 pl (4 eq) of ropylethylamine (DIEA) was added.
After shaking the reaction mixture for 4 h at 25 °C, the resin was filtered off and
washed successively with CHZCIZ (1x), DMF (1x) and CHZCIZ (1x). A solution of
CHZClz/MeOH/DIEA (17/2/1, 10 mL) was added to the resin and the sion was
shaken for 30 min. After filtration the resin was washed in the following order with
CH2C|2(1x), DMF (1x), CH2C|2(1x), MeOH (1x), CHZCIZ (1x), MeOH (1x), CHZCIZ (2x), EtZO
(2x) and dried under vacuum for 6 hours.
Loading was typically 0.6-0.7 mMol/g.
The following preloaded resins was prepared:
Fmoc—Pro-O-Z—chlorotrityl resin.
The synthesis was carried out employing a Syro-peptide sizer (MultiSynTech)
using 24-96 reaction vessels. In each vessel 0.04 mMol of the above resin was placed
and the resin was swollen in CHZCIZ and DMF for 15 min, respectively. The following
on cycles were programmed and carried out:
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Step Reagent Time
1 DMF, wash 2x1 min
2 20% piperidine/DMF 1x5 min, 1x15 min
3 DMF, wash 5x1 min
4 5 eq Fmoc amino MF
+5 eq /DMF, 10 eq DIEA/DMF 1x60 min
DMF, wash 3x1 min
Step 4 was repeated once.
Unless indicated otherwise, the final coupling of an amino acid was followed by Fmoc
deprotection by applying steps 1-3 ofthe above described reaction cycle.
Amino acid building block syntheses
Synthesis of Fmoc-Orn(iPr,Boc)-OH
The synthesis of (25)-N°‘-fluorenylmethoxylcarbonyl-N‘”,Nw-tert-butyloxycarbonyl-
isopropyl-2,5—diaminopentanoic acid was lished by suspending 15.2 g Fmoc-
Orn-OH*HC| in 150 mLTHF (0.26 M) ed by adding 375 mL acetone (132 eq) and
.6 g sodium triacetoxyborohydride (2.5 eq). The reaction mixture was stirred for 2 h
and uent to completion of the reaction (monitored by LC—MS) 120 mL of sat.
Na2C03-solution and 10.2 g Boczo (1.2 eq) were added. After stirring overnight sat.
Na2C03-solution and BocZO were added again twice in portions according to the
remaining starting material. Following completion of the Boc-introduction hexane
was added twice, separated, and the aqueous layer was acidified with 5 N HCIaq (pH =
1) and extracted thrice with ethyl acetate thereafter. Finally, the combined organic
layers were dried with NaZSO4 and evaporated to obtain the product as white foam.
W0 2013i182240
The amino acid building blocks Fmoc-DLys(iPr,Boc)-OH and Fmoc-Lys(iPr,Boc)-OH
could be synthesized accordingly; the latter is also commercially available.
ation and work up of backbone cyclized peptides
Cleavage of the fully ted peptide nt
After completion of the synthesis, the resin (0.04 mMol) was suspended in 1 mL (0.13
mMol, 3.4 eq) of 1% TFA in CHZCIZ (v/v) for 3 minutes, filtered, and the filtrate was
neutralized with 1 mL (0.58 mMol, 14.6 eq) of 10% DIEA in CHZCIZ (v/v). This
procedure was repeated three times to ensure completion of the cleavage. The
filtrate was evaporated to dryness and a sample ofthe t was fully deprotected
by using a cleavage mixture containing 95% trifluoroacetic acid (TFA), 2.5% water and
2.5% triisopropylsilane (TIS) to be analyzed by reverse phase-HPLC (C18 column) and
ESI-MS to monitor the efficiency of the linear peptide synthesis.
Cyclization of the fully protected linear peptide
The fully protected linear peptide (0.04 mMol) was dissolved in DMF (4 uMol/mL).
Then 30.4 mg (0.08 mMol, 2 eq) of HATU, 10.9 mg (0.08 mMol, 2 eq) of HOAt and 28
pl (0.16 mMol, 4 eq) DIEA were added, and the mixture was vortexed at 25 °C for 16
hours and subsequently concentrated under high vacuum. The residue was
partitioned between CHZCIZ and H20/CH3CN (90/10: v/v). The CHZCIZ phase was
ated to yield the fully ted cyclic peptide.
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Full deprotection of the cyclic peptide
The fully protected cyclic peptide obtained was ved in 3 mL of the cleavage
mixture containing 82.5% trifluoroacetic acid (TFA), 5% water, 5% thioanisole, 5%
phenol and 2.5% ethanedithiole (EDT). The e was allowed to stand at 25 °C for
2.5 hours and thereafter concentrated under vacuum. After precipitation of the cyclic
fully ected peptide in diethylether (EtZO) at 0 °C the solid was washed twice
with EtZO and dried.
Formation of disu/fide ,B-strand linkage and purification
Afterfull deprotection, the crude peptide was dissolved in 0.1 M ammonium acetate
buffer (1 mg/ 1 mL, pH = 7—8). DMSO (up to 5% by volume) was added and the
solution was shaken overnight. ing evaporation the residue was ed by
preparative reverse phase HPLC.
After lyophilisation the products were obtained as white powders and analysed by
the following analytical method: Analytical HPLC retention times (RT, in minutes)
were determined using a Ascentis Express C18 column, 50 x 3.0 mm, (cod. 53811-U-
Supelco) with the following solvents A (H20 + 0.1% TFA) and B (CH3CN + 0.1% TFA)
and the gradient: 0-0.05 min: 97% A, 3% B; 3.4 min: 33% A 67% B; 3.41-3.65 min: 3%
A, 97% B; 3.66—3.7 min: 97% A, 3% B. Flow rate = 1.3 mL/min; UV_Vis = 220 nm.
Example 1: Starting resin was Fmoc-Pro-O-Z-chlorotrityl resin, which was prepared as
described above. To that resin Pr), y at position 15, was grafted. The linear
peptide was sized on solid support according to the procedure described above
in the following sequence:
Resin—Prole-DLys(iPr)15-Lys(iPr)14-Gln13-Tyrlz—Cysll-Tyrlo-Argg—Orn(iPr)8-DPro7-Ala6-Ser5-
Cys4-Tyr3-Hisz-Tyr1. Following a final Fmoc deprotection as described above, the
W0 2013!182240
peptide was cleaved from the resin, cyclized, deprotected and, after formation ofthe
disulfide B-strand linkage as described above, purified as indicated above.
The HPLC-retention time (minutes) was determined using the analytical method as
described above (UV-purity [after preparative HPLC]: 95%; RT: 1.54; [M+3H]/3 =
709.9).
Example 2: Starting resin was Fmoc—Pro-O—2—chlorotrityl resin, which was prepared as
described above. To that resin DPro, finally at position 15, was grafted. The linear
e was synthesized on solid support according to the procedure described above
in the following sequence:
Resin-Prole-DProls-LysfiPr)14-G|n13-Tyrlz-Cysfl-Tyrlo-Argg-Orn(iPr)8-DPro7-Acc6-Ser5-
Cys4—Tyr3-Hisz—Tyr1. Following a final Fmoc deprotection as bed above, the
peptide was cleaved from the resin, cyclized, deprotected and, after formation ofthe
disulfide B-strand e as described above, purified as ted above.
The HPLC-retention time (minutes) was determined using the ical method as
described above rity [after preparative HPLC]: 95%; RT: 1.58; [M+3H]/3 =
689.3).
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2. Biological methods
2.1. Preparation of the peptides
Lyophilized peptides were d on a Microbalance (Mettler MT5) and dissolved in
DMSO to a final concentration of 10 mM. Stock solutions were kept at +4 °C, light
protected. The biological assays were carried out under assay conditions having less
than 1% DMSO unlike ted otherwise.
2.2. Cell culture
Namalwa cells (CXCR4 ly sing non-adherent cells, ATCC 32) were
cultured in RPM|1640 plus 10% FBS, and pen/strept. HELA cells were maintained in
RPMI164O plus 10% FBS, pen/strept and 2 mM L-glutamine. Cos-7 cells were grown in
DMEM medium with 4500 mg/mL glucose supplemented with 10% FCS, pen/strept
and 2 mM L—glutamine. All cell lines were grown at 37 °C at 5% C02. Cell media, media
supplements, ffer, HEPES, antibiotic/antimycotic, pen/strept, non essential
amino acid, L—glutamine, B—mercaptoethanol and sera were purchased from Gibco
(Pailsey, UK). All fine chemicals were supplied by Merck (Darmstadt, Germany).
2.3. Chemotactic Assay (Cell migration assay)
The Chemotactic response of Namalwa cells (ATCC CRL-1432) to a gradient of stromal
cell-derived factor 1d (SDF-l) was measured using a modified Boyden chamber
axis system (ChemoTx; Neuroprobe). In this system, the upper chamber of
each well is separated from the lower chamber containing the chemoattractant SDF-l
by a polycarbonate membrane (5pm pore size). A circular area of that membrane in
the region that covers each lower well is enclosed by a hydrophobic mask to retain
W0 2013!182240
the cell suspension within this area. The system was prepared by loading the bottom
wells with aliquots of 30 pL of chemotaxis medium (RPMI 1640 without Phenol red +
0.5% BSA) comprising either appropriate serial dilutions of peptides or no peptide at
all in combination with SDF-l (0.9 nM) or without the chemoattractant. The
membrane was placed over the bottom wells, and aliquots of 50 uL of a suspension of
Namalwa cells (3.6 x 106 cells/mL) in chemotaxis , premixed with chemotaxis
medium comprising either appropriate serial dilutions of peptides or no peptide at all,
was delivered onto each of the hydrophobically limited regions of the upper surface
ofthe membrane. The cells were allowed to migrate into the bottom chamber for 5 h
at 37 °C in 5% C02. After this period, the membrane was d and its topside was
carefully wiped and washed with PBS to eliminate non-migrated cells. Migrated cells
were transferred using a ”funnel” adaptor to a receiving 96-well plate and the cell
number was determined by using the CyO.uantTM NF cell proliferation assay
(lnvitrogen) based on the measurement of cellular DNA content via scent dye
binding. Following the manufacturer’s directions, 50 uL of CyQuantTM dye
t/HBSS buffer (1/500 [v/v]) were added to each well of the above ned
receiving 96—well plate. After incubation for 0.5 h at room temperature the plate was
sealed and the fluorescence ity of each sample was measured by using a Wallac
1420 VICTOR2TM plate reader (PerkinElmer) with excitation at 485 nm and emission
ion at 535 nm. Finally, the data were normalized by using the controls and |C50-
values were determined using GraphPad M (GraphPad) by fitting a logarithmic
curve to the averaged datapoints.
2.4. Cytotoxicity assay
The cytotoxicity of the es to HELA cells (Acc57) and COS-7 cells (CRL—1651) was
determined using the MTT reduction assay (T. Mossman, J. Immunol. Meth. 1983, 65,
55-63; M.V. Berridge, A.S. Tan, Arch. Biochem. Biophys. 1993, 303, 474-482). y,
the method was as follows: 4000 HELA cells/well and 3400 COS-7 cells/well were
W0 2013!182240
seeded and grown in 96-well microtiter plates for 24 h at 37 °C at 5% C02. Thereafter,
time zero (T2) was determined by MTT ion (see below). The supernatant ofthe
remaining wells was ded, and fresh medium and compounds in serial dilutions
(12.5, 25 and 50 (1M, triplicates; 0 uM, blank) were pipetted into the wells. After
incubation of the cells for 48 h at 37 °C at 5% C02 the supernatant was discarded
again and 100 pL MTT reagent (0.5 mg/mL in RPMI1640 and DMEM,
respectively)/well was added. Following incubation at 37 °C for 2—4 h the media were
aspirated and the cells were spiked (100 pL isopropanol/well). The absorbance ofthe
solubilized formazan was measured at 595 nm (OD595peptide). For each
tration averages were calculated from triplicates. The tage of growth
was calculated as follows: (OD595peptide-OD595Tz)/(OD595blank-OD595Tz) x 100%. The
Glso (Growth Inhibition) concentrations were calculated for each peptide by using a
trend line function for the trations (50, 25, 12.5 and 0 uM), the corresponding
percentages and the value 50, (=TREND (C502C0,%50:%0,50).
2.5. Hemolysis
The peptides were tested for their hemolytic activity against human red blood cells
(hRBC). Fresh hRBC were washed four times with phosphate buffered saline (PBS) and
centrifuged for 10 min at 3000 x g. Compounds (100 uM) were incubated with 20%
hRBC (v/v) for 1 h at 37 °C and shaking at 300 rpm. The final erythrocyte
concentration was approximately 0.9 x 109 cells/mL. A value of 0% and 100% cell lysis,
respectively, was determined by incubation of hRBC in the ce of PBS ning
0.001% acetic acid and 2.5% Triton X-100 in H20, respectively. The samples were
centrifuged, the supernatants were 8-fold diluted in PBS buffer and the optical
densities (OD) were measured at 540 nm. The 100% lyses value (OD540H20) gave an
OD540 of approximately 0.5-1.0.
Percent hemolysis was calculated as follows: (OD540peptide/OD540HZO) x 100%.
W0 2013!182240
2.6. Plasma stability
The stability ofthe peptides in human and mouse plasma was determined by applying
the following : 346.5 p well of freshly thawed human plasma (Basler
BIutspende-dienst) and mouse plasma (Harlan Sera-Lab, UK), tively, were
spiked with 3.5 uL/well of compound dissolved in DMSO/HZO (90/10 [v/v], 1 mM,
cate) and incubated at 37° C. At t = 0, 15, 30, 60, 120, 240 and 1440 min aliquots
of 50 (LL were transferred to filtration plate wells containing 150 l of 2% formic
acid in acetonitrile. Following shaking for 2 min the occurred suspensions were
filtrated by vacuum. 100 uL of each filtrate were transferred to a propylene microtiter
plate and dried under N2. The residual solids were reconstituted by adding 100
l of water/acetonitrile, 95/5 (v/v) + 0.2% formic acid and analyzed by LC/MS as
follows: Column: , XBridge C18, mobile phases: (A) water + 0.1% formic acid
and (B) acetonitriIe/water, 95/5 (v/v) + 0.1% formic acid, gradient: 5%-100% (B) in 1.8
minutes, electrospray ionization, MRM detection (triple quadrupole). The peak areas
were determined and triplicate values are averaged. The stability is expressed in
t of the initial value at t = 0. (tx/tO x 100). By using the TREND function of
EXCEL (Microsoft Office 2003) T1/2 were determined.
2.7. Plasma Protein Binding
495 uL aliquots of human plasma (Basler Blutspendedienst) as well as 495 uL aliquots
of PBS were placed in individual deepwells of a polypropylene plate (Greiner) and
spiked each with 5 (1L of 1 mM solutions of peptides in 90% DMSO. After shaking the
plate for 2 min at 600 rpm 150 uL aliquots of the plasma/peptide mixtures were
transferred in triplicates to the polypropylene filter plate (10 kDa, Millipore) whereas
150 uL ts of the PBS/peptide mixtures were transferred either to the individual
wells of the filter plate (filtered controls) or directly into the individual wells of the
W0 2013!182240
receiving plate (Greiner) (non-filtered controls). The plate sandwich consisting of filter
and ing plate was incubated for 1 h at 37 °C and subsequently centrifuged at
3220 g for 2h at 15 °C. The filtrates in the receiving plate were analysed by LC/MS as
follows: Column: Waters, XBridge C18, mobile phases: (A) water + 0.1% formic acid
and (B) acetonitrile/water, 95/5 (v/v) + 0.1% formic acid, gradient: 5%-100% (B) in 1.8
minutes, electrospray ionization, MRM detection (triple quadrupole). The peak areas
were determined and cate values are averaged. The g is expressed in
t of the filtered and non-filtered controls by 100—(100x Tlh/Tctr)- Finally the
average of these values is calculated.
The results of the experiments described under 2.3 — 2.7 are indicated in the Tables 1,
2, 3 and 4 herein below.
2.8. Pharmacokinetic study (PK)
For the compounds of Ex. 1 and Ex. 2 pharmacokinetic studies after intravenous (iv)
administration were performed.
grams (i 20%) male CD-1 mice obtained from Charles River Laboratories
Deutschland GmbH were used. The e, phosphate buffered , was added to
give a final concentration of0.5 mg/mL of the compound. The volume was
2 mL/kg and the compound was injected to give a final intravenous dose of 1 mg/kg.
Approximately 300-400 pL of blood was removed under light isoflurane anesthesia by
cardiac puncture at ermined time intervals (5, 15, 30 min and 1, 2, 3, 4, hours)
and added to heparinized tubes. Plasma was d from pelleted cells upon
centrifugation and frozen at —80 °C prior to HPLC-MS analysis.
Preparation of plasma calibration- and plasma study-samples
Aliquots of 50 (LL each of mouse plasma of untreated s (”blank” mouse plasma)
were spiked with known s of the compounds Ex. 1 and Ex. 2 in order to obtain
plasma calibration samples for each compound in the range 1 — 4000 ng/mL.
Aliquots of 50 pL each of mouse plasma from treated animals were used as plasma
study samples.
Extraction ma calibration- and plasma study-samples
All plasma samples were spiked with an riate internal standard and extracted
with acetonitrile containing 2% formic acid. Supernatants were evaporated to dryness
under nitrogen and the remaining solids reconstituted in water + 0.2% formic
cetonitrile 95/5 (v/v).
LC—MS/MS-analysis
Extracts were then analyzed by reverse—phase chromatography (Acquity HSS C18 SB,
100 x 2.1 mm, 1.8 pm column, ), using the following conditions: mobile
phases: (A) water + 0.1% formic acid/acetonitrile 95/5 (v/v), (B) aceto-nitrile/water +
0.1% formic acid 95/5 (v/v), gradient: 1% (B) 001 min, 40% (B) 01-25. The detection
and quantification was performed by mass spectrometry, with electrospray interface
in positive mode and selective fragmentation of analytes (4000 Q Trap mass
spectrometer, AB Sciex).
cokinetic evaluation
PK parameters were calculated by WinNonLinTM software version 5.3 (Pharsight— A
CertaraTM Company, Moutain View, CA 94041 USA) using a one-compartmental
model is. PK parameters were determined by least-square fitting of the model
to the experimental data.
The results of the experiments bed in 2.8 are indicated in Tables 5a and 5b
herein below.
2.9. Drug loading calculations via maintainance dose rate (rate of infusion)
The drug load for an implant comprising a peptide of the ion was calculated
following the basic principles in pharmacokinetics (see also J. Gabrielsson, D. Weiner,
”Pharmacokinetics and Pharmaco-dynamics Data is: Concepts and
ations”, 4th edition, Swedish Pharmaceutical Press, Stockholm, Sweden, 2006)
whereby the maintainance dose rate (rate of infusion, Rm) can be defined as the rate
at which a drug is to be administered to reach a steady state of a certain dose in the
plasma. The maintainance dose rate can be expressed using the correlation Rm
[g/(h*kg)] = CLiV [L/(h*kg)] x Css’eff [g/L], wherein CLiV is the clearance (i.v. — admin.)
and Cssfiff the effective concentration of the drug in the plasma at steady state
considering an efficacy margin A: Cssfiff [g/L] = A x (IC50/fu) x MW [(Mol/L)*(g/Mol)].
Therefore, the total amount of a drug loaded into an implant providing for a constant
effective tration of that drug in the plasma for a certain period of time in a
subject of a certain body weight can be calculated by ng the following
correlation:
Drugload [g/subject] = Rm [g/(h*kg)] x on [h] x BW [kg/subject].
The results of the calculations bed in 2.9 are indicated in Table 6 herein below
and based on the data given in Tables 1, 4 and 5b. Further pre-conditions are an
efficacy margin of A = 3, a study duration of 672 h (28 days) and a body weight of a
human suject of 70 kg. The glomerular filtration rate (GFR) which mainly influences
the clearance of the peptide is highly dependent on the species. In general, the GFR
of humans is averaged to be 107 mL/(h*kg) compared to the GFR of mouse being 840
mL/(h*kg). Therefore, the CLiV-mouse values indicated in Table 5b were allometrically
scaled by 107 kg)/840 mL/(h*kg) = 0.127 before employed in the above
described correlations.
2012/060766
Table 1
m leo [nM] i SD, CXCR4 receptor
0.17 i 0.1
Table 2
_Hemolysis
Hela Cells Cos—7 Cells at
GI50 [HM] GI50 [MM] 100 PM
Table 3
a Plasma stability
human pl. human pl. mouse pl. mouse pl.
Tl/z [min] cpd left at Tl/z [min] cpd left at
1440 min 1440 min
[%] [%]
1440 1440
n 1440 1440
Table 4
E Plasma protein binding [%] Fraction unbound, fu
2012/060766
Table 5a
Ex. 1 Ex. 2
i.v. route i.v. route
Dose: 1 mg/kg Dose: 1 mg/kg
< LoQ below Limit of Quantification
Molecular Weight CLiV, human
(salt free), (allometric
MW [g/Mol] scaled)
1 212753
E 206640
Claims (15)
1. A compound of the general formula cyclo(-Tyr 1-His 2-Xaa 3-Cys 4-Ser 5-Xaa 6-DPro 7-Xaa 8- 5 Arg 9-Tyr 10 -Cys 11 -Tyr 12 -Xaa 13 -Xaa 14 -Xaa 15 -Pro 16 -), disulfide bond between Cys4 and Cys11 , or a pharmaceutically able salt thereof, wherein Xaa 3 is Tyr; Tyr(Me); or Tyr(CF Tyr(Me) is (2S)amino-(4-methoxyphenyl)propionic acid, 10 Tyr(CF 3) is (2S)amino-(4-trifluoromethoxyphenyl)propionic acid, Xaa 6 is Ala; or Acc Acc is 1-aminocyclopropane-carboxylic acid, Xaa 8 is Orn(iPr), r) is (2S)-Nω-isopropyl-2,5-diaminopentanoic acid, 15 Xaa 13 is Gln; or Glu, Xaa 14 is Lys(iPr), Lys(iPr) is (2S)-Nω-isopropyl-2,6-diaminohexanoic acid, Xaa 15 is DLys(iPr), DLys(iPr) is (2R)-Nω-isopropyl-2,6-diaminohexanoic acid, 20 with the proviso that if Xaa6 is Ala, then Xaa15 is DLys(iPr).
2. cyclo(-Tyr1-His 2-Tyr 3-Cys 4-Ser 5-Ala 6-DPro 7-Orn(iPr) 8-Arg 9-Tyr 10 -Cys 11 -Tyr 12 -Gln 13 - Lys(iPr) 14 -DLys(iPr) 15 -Pro 16 -), disulfide bond n Cys4 and Cys11 , or a ceutically acceptable salt thereof.
3. A compound according to claim 1 or claim 2 for use as a therapeutically active substance.
4. A compound according to claim 3, for use as a therapeutically active substance 30 having CXCR4 antagonizing, anti-cancer activity and/or anti-inflammatory activity and/or stem cell mobilizing activity.
5. A ceutical composition comprising a compound according to any one of claims 1 to 3 and a pharmaceutically inert carrier.
6. The pharmaceutical composition according to claim 5, in a form suitable for 5 oral, topical, transdermal, injection, buccal or transmucosal administration.
7. The pharmaceutical composition according to claim 6, in the form of a tablet, dragee, capsule, solution, liquid, gel, plaster, cream, nt, syrup, slurry, suspension, powder or suppository.
8. The use of a compound according to any one of claims 1 to 3 for the cture of a medicament having CXCR4 antagonizing, anti-cancer ty and/or anti-inflammatory activity and/or stem cell mobilizing activity. 15
9. Use ing to claim 8, wherein the ment is for preventing HIV infections in healthy individuals; for slowing, or halting, the viral progression in an HIV ed patient; for treating or preventing, a cancer, or an immunological disease, that is mediated by, or results from, CXCR4 receptor activity; for treating immunosuppression; for accompanying the apheresis collection of eral blood 20 stem cells; or for inducing the mobilization of stem cells to regulate tissue repair.
10. A process for the manufacture of compounds according to any one of claims 1-3 which process comprises (a) ng an appropriately functionalized solid support with an appropriately 25 N-protected derivative of Pro which in the desired end-product is in position (b) removing the N-protecting group from the product thus obtained; (c) coupling the product thus obtained with an appropriately N-protected derivative of that amino acid which in the desired end-product is in position 15, any functional group which may be present in said N-protected amino acid derivative being likewise appropriately ted; (d) removing the N-protecting group from the t obtained in step (c); (e) effecting steps substantially corresponding to steps (c) and (d) using 5 appropriately N-protected derivatives of amino acids which in the desired end-product are in positions n-2 to 1, any onal group(s) which may be present in said N-protected amino acid derivatives being likewise appropriately protected; (f) if desired, forming a disulfide bridge between the side-chains of the Cys 10 residues at P4 and P11; or alternatively, forming the aforesaid linkage subsequent to step (i), as described herein below; (g) detaching the product thus obtained from the solid support; (h) cyclizing the product cleaved from the solid support; (i) removing any protecting groups present on onal groups of any members 15 of the chain of amino acid e; and (j) if desired, attaching one or several isopropyl groups (k) if desired, ting the product thus obtained into a pharmaceutically acceptable salt or ting a ceutically acceptable, or unacceptable, salt thus obtained into the corresponding free compound or into a different, 20 pharmaceutically acceptable, salt.
11. The compound according to claim 1, substantially as herein described with reference to any one of the Examples thereof. 25
12. The compound according to claim 2, substantially as herein bed with reference to any one of the Examples thereof.
13. The pharmaceutical composition according to claim 5, wherein the compound is substantially as herein described with reference to any one of the Examples 30 thereof.
14. The use according to claim 8, wherein the compound is substantially as herein described with reference to any one of the Examples thereof.
15. The process according to claim 10, substantially as herein described with 5 nce to any one of the Examples thereof.
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
PCT/EP2012/060766 WO2013182240A1 (en) | 2012-06-06 | 2012-06-06 | Beta-hairpin peptidomimetics |
Publications (2)
Publication Number | Publication Date |
---|---|
NZ702470A NZ702470A (en) | 2016-12-23 |
NZ702470B2 true NZ702470B2 (en) | 2017-03-24 |
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