NZ701995B - Therapeutic biologic for treatment of hepatocellular carcinoma - Google Patents
Therapeutic biologic for treatment of hepatocellular carcinomaInfo
- Publication number
- NZ701995B NZ701995B NZ701995A NZ70199514A NZ701995B NZ 701995 B NZ701995 B NZ 701995B NZ 701995 A NZ701995 A NZ 701995A NZ 70199514 A NZ70199514 A NZ 70199514A NZ 701995 B NZ701995 B NZ 701995B
- Authority
- NZ
- New Zealand
- Prior art keywords
- conjugate
- tumor
- seq
- plvap
- variable region
- Prior art date
Links
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P1/00—Drugs for disorders of the alimentary tract or the digestive system
- A61P1/16—Drugs for disorders of the alimentary tract or the digestive system for liver or gallbladder disorders, e.g. hepatoprotective agents, cholagogues, litholytics
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- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
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- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/745—Blood coagulation or fibrinolysis factors
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- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
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- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
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Abstract
The invention provides, inter alia, conjugates comprising a coagulating agent conjugated to an antibody, where the antibody specifically binds an extracellular domain epitope of a mammalian PLVAP protein. These agents specifically target HCC tumors and treat the HCC. The invention also provides methods of using these conjugates, such as methods of treating HCC by administering the conjugates provided by the invention or compositions provided by the invention, such as pharmaceutical compositions. thods of using these conjugates, such as methods of treating HCC by administering the conjugates provided by the invention or compositions provided by the invention, such as pharmaceutical compositions.
Description
THERAPEUTIC BIOLOGIC FOR TREATMENT OF HEPATOCELLULAR
CARCINOMA
RELATED APPLICATION
This application claims the benefit of U.S. Provisional Application No.
61/904,951, filed on November 15, 2013. The entire teachings of the above
application are incorporated herein by reference.
INCORPORATION BY REFERENCE OF MATERIAL IN ASCII TEXT FILE
This application incorporates by reference the Sequence Listing
contained in the following ASCII text file being submitted concurrently herewith:
a) File name: SEQUENCELISTING.txt; created October 28, 2014, 38
KB in size.
BACKGROUND OF THE INVENTION
Primary liver cancer is the fifth most common cancer in men and the
seventh in women worldwide. Globally, it is the second leading cause of cancer
death in men and the sixth leading cause of cancer death among women.
Hepatocellular carcinoma (HCC) accounts for 85% of primary liver cancer. HCC is
endemic in southeast Asia and Sub-Saharan Africa. The incidence in western
countries has increased in recent years and is expected to continue to increase. HCC
is the fifth and the ninth leading cause of cancer deaths for men and women in the
U.S. The 5 years overall survival for HCC is only 15%.
In view of the significant incidence of this disease, and its immense tolls
on patients, their support systems and society at large, further improvement in
treatment of HCC patients with intermediate and advance stage disease is urgently
needed—more specifically, a need exists for agents that can specifically target HCC
tumors and, e.g., reduce the volume of the tumors to treat the HCC and/or eliminate
th tumors, as well as methods of making and using the same.
SUMMARY OF THE INVENTION
The invention provides, inter alia, agents that specifically target vascular
endothelial cells of HCC tumors and treat the HCC, along with associated methods
of using these agents. In a first aspect, the invention provides conjugates comprising
a coagulating agent conjugated to an antibody, where the antibody specifically binds
an extracellular domain epitope of a mammalian PLVAP protein.
In some embodiments, the coagulating agent is a coagulating protein. In
more particular embodiments, the coagulating protein is a tissue factor. In still more
particular embodiments, the tissue factor comprises an amino acid sequence at least
about: 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 96, 97, 98, 99%, or more
identical to SEQ ID NO: 1; e.g., at least 80, 85, 90, 95, 96, 97, 98, 99%, or more
identical to SEQ ID NO: 1; e.g., at least 95, 96, 97, 98, 99%, or more identical to
SEQ ID NO: 1.
In a related aspect, the invention provides conjugates comprising a tissue
factor with an amino acid sequence at least 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90,
95, 96, 97, 98, 99%, or more identical to SEQ ID NO: 1 conjugated, by a peptide
bond, to an antibody, wherein the antibody specifically binds an epitope in an
extracellular domain of a human PLVAP protein.
In any of the preceding aspects and embodiments, the mammalian
PLVAP protein can comprise an amino acid sequence at least 50, 55, 60, 65, 70, 75,
80, 85, 90, 95, 96, 97, 98, 99%, or more identical to SEQ ID NO: 2; more preferably
at least 80, 85, 90, 95, 96, 97, 98, 99%, or more identical to SEQ ID NO: 2; still
more preferably at least 95, 96, 97, 98, 99%, or more identical to SEQ ID NO: 2.
For any of the preceding aspects and embodiments, the antibody can
specifically bind an epitope selected from PPAGIPVAPSSG (SEQ ID NO: 25) or
LAIRNSALDTCIKTKSQPMMPVSRPM (SEQ ID NO: 26). In more particular
embodiments, the antibody specifically binds the epitope PPAGIPVAPSSG (SEQ
ID NO: 25).
For the conjugates of any of the preceding aspects and embodiments, in
some embodiments, the coagulating protein and antibody are chemically cross-
linked. In other embodiments, the coagulating protein and antibody are linked by a
peptide bond.
In the conjugates of any one of the preceding aspects and embodiments,
the antibody can be an immunoglobulin comprising a light chain variable region and
a heavy chain variable region. In more particular embodiments, the coagulating
protein and antibody are linked by a peptide bond between the carboxy terminus of a
protein comprising the heavy chain variable region and the amino terminus of the
coagulating protein. In other embodiments, the coagulating protein and antibody are
linked by a peptide bond between the carboxy terminus of a protein comprising the
light chain variable region and the amino terminus of the coagulating protein.
In some embodiments, in the conjugate of any one of the preceding
aspects or embodiments, the coagulating protein and antibody are linked by a
peptide bond by a linker peptide. In more particular embodiments, the linker peptide
comprises (Gly -Ser) , wherein n is 1, 2, 3, 4, 5, or 6; more preferably wherein n is
In certain embodiments, the conjugate of any one of the preceding
aspects or embodiments, the antibody is an immunoglobulin comprising:
i) a heavy chain variable region comprising the CDRs of the variable
region comprising the amino acid sequence of SEQ ID NO: 3 and a
light chain variable region comprising the CDRs of the variable
region comprising the amino acid sequence of SEQ ID NO: 4,
optionally wherein the variable light chain and variable heavy chain
have up to 1, 2, 3, or 4 conservative amino acid substitutions in each
CDR; or
ii) a heavy chain variable region comprising the CDRs of the variable
region comprising the amino acid sequence of SEQ ID NO: 5 and a
light chain variable region comprising the CDRs of the variable
region comprising the amino acid sequence of SEQ ID NO: 6,
optionally wherein the variable light chain and variable heavy chain
have up to 1, 2, 3, or 4 conservative amino acid substitutions in each
CDR.
In more particular embodiments, the light chain variable region and/or
heavy chain variable region are humanized. In still more particular embodiments,
the light chain variable region and heavy chain variable region are given by:
i) a heavy chain variable region selected from SEQ ID NO: 7, 8, 9, 10,
or 11, more particularly wherein the heavy chain variable region is
SEQ ID NO: 11; and a light chain variable region selected from SEQ
ID NO: 12, 13, or 14, more particularly wherein the light chain
variable region is SEQ ID NO: 13; or
ii) a heavy chain variable region selected from SEQ ID NO: 15, 16, 17,
18, or 19, more particularly wherein the heavy chain variable region
is SEQ ID NO: 19; and a light chain variable region selected from
SEQ ID NO: 20, 21, or 22, more particularly wherein the light chain
variable region is SEQ ID NO: 22.
In certain embodiments of any of the preceding aspects and
embodiments, the conjugate comprises an amino acid sequence at least 80, 85, 90,
95, 96, 97, 98, 99%, or more identical to the amino acid sequence of SEQ ID NO:
In a related aspect, the invention provides a nucleic acid encoding the
conjugate of any one of the preceding aspects and embodiments. In a particular
embodiment, the nucleic acids provided by the invention are contained in a vector.
In a related embodiment, the vector can be in a host cell, and in certain
embodiments, the host cell is a bacteria (such as, e.g., Escherichia coli). In other
embodiments, the host cell is a eukaryotic cell (e.g., a fungus, such as yeast,
including budding yeast; an insect cell, such as Sf9, Sf21, or high five cells; or
mammalian cells, such as CHO, VERO, or COS cells).
In another related aspect, the invention provides pharmaceutical
compositions comprising the conjugate of any of the preceding aspects and
embodiments, wherein the composition further comprises a suitable carrier,
excipient, or contrast medium. In more particular embodiments, the composition is
in a dosage form suitable for administration to a subject.
In another aspect, the invention provides methods of making the
conjugate of any one of the preceding aspects and embodiments by culturing the
host cell of any one of the preceding aspects and embodiments under conditions that
support the expression of the conjugate by the host and isolating the expressed
conjugate.
In yet another embodiment, the invention provides methods of: treating a
tumor with PLVAP-positive vasculature, treating hepatocellular carcinoma (HCC),
reducing volume of a tumor with PLVAP-positive vasculature, or inducing
thrombosis and tumor necrosis of a tumor with PLVAP-positive vasculature, in a
mammalian subject in need thereof. In these methods, a therapeutically effective
amount of the conjugate of any one of the preceding aspects and embodiments or a
pharmaceutical composition of any one of the preceding aspects and embodiments
are provided (e.g., administered, by any suitable means) to the subject (e.g., a
human).
In some embodiments, the HCC tumor volume is reduced following
thrombosis and tumor necrosis induced by the conjugate.
In certain embodiments, the conjugate is administered intravascularly to
the tumor, e.g., HCC, of the subject. In more particular embodiments, the conjugate
is infused directly into one or more tumor-feeding arteries.
In some embodiments, the subject is undergoing concurrent or sequential
treatment with one or more chemotherapeutic agents, radio-therapy, intratumoral
alcohol injection, surgery, cryotherapy, radio frequency ablation, or a combination
of one or more of the foregoing. In more particular embodiments, the conjugate is
administered to the subject together with one or more chemotherapeutic agents. In
still more particular embodiments, the one or more chemotherapeutic agents
comprise a therapeutically effective amount of sorafenib (see, e.g., PubChem
216239), bevacizumAb, or other antiangeogenic therapeutic drugs. In certain
embodiments, the conjugate is administered to the subject in a pharmaceutical
composition further comprising the one or more chemotherapeutic agents.
In some embodiments, the conjugate is administered at a dose of about 5
to about 200 µg/cm of tumor, more particularly about 10 to about 150 µg/cm of
tumor, and more particularly about 15 to about 100 µg/cm of tumor.
In certain embodiments, the conjugate is administered in a single dose.
In other embodiments, the conjugate is administered in 2, 3, 4, 5, 6, 7, 8, 9, 10 doses,
or more. In more particular embodiments, the doses are administered over a period
of 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 days; or 1, 2, 3, 4, 5, or 6 weeks; or 1, 2, 3, 4, 5, or 6
months, or more.
BRIEF DESCRIPTION OF THE DRAWINGS
This patent or application file contains at least one drawing executed in
color. Copies of this patent or patent application publication with color drawing(s)
will be provided by the Office upon request and payment of the necessary fee.
The foregoing will be apparent from the following more particular
description of example embodiments of the invention, as illustrated in the
accompanying drawings.
is a picture of an electrophoretic gel, which shows SDS-PAGE
analysis of purified GST-tagged human tissue factor protein. Ten percent
polyacrylamide gel was used. Three micrograms of recombinant human tissue
factor tagged with GST (GST-hTF) was loaded on the gel.
is a graph of OD405nm as a function of protein concentration,
illustrating the binding of MECA32 chemically conjugated with human tissue factor
(MECA32-hTF) to human PLVAP by enzyme-linked immunoassay. Each well of
the assay plate was coated with water soluble extracellular domain of mouse PLVAP
protein. After blocking, the coated wells were incubated with increasing
concentrations of MECA32-hTF. One well was incubated with human tissue factor
(hTF). Binding of MECA32-hTF to PLVAP was detected with biotinylated anti-
hTF antibody from R&D Systems, Inc. (Minneapolis, MN) and strepavidin-alkaline
phosphotase conjugate from Thermo Scientific, Inc. (Rockford, IL). The result
showed that MECA32-hTF bound to mouse PLVAP and carried hTF detectible with
anti-hTF antibody. Control soluble hTF without antibody (solid circle) could not
bind to PLVAP and be detected.
FIGs. 3A and 3B are diagrams showing construction of MECA32-Fab-
TF expression vectors.
is a diagram of the expression construct for CSRO2-Fab-TF.
is a picture of an SDS-PAGE of recombinant human PLVAP and
mouse PLVAP. Recombinant human PLVAP (5µg) and mouse PLVAP (2.5µg)
were analyzed with 12% polyacrylamide gel.
FIGs. 6A and 6B are micrographs illustrating immunohistochemical
(IHC) staining of PLVAP expression in vascular endothelial cells of Hep3B tumor
xenograft in SCID mouse. MECA32 anti-mouse PLVAP monoclonal antibody
(10µg/ml) was used for IHC staining (panel B). The left panel was the section of the
same block stained with normal rat IgG at the same concentration as negative
control (panel A). The result shows that vascular endothelial cells in Hep3B tumor
xenograft like human HCC were stained positively for PLVAP expression (dark
brown precipitates pointed by arrows in panel B). The PLVAP expressed by tumor
vascular endothelial cells can therefore be targeted to assess therapeutic effects of
MECA32-TF and MECA32-Fab-TF. The same vessels cannot be stained with
control rat IgG (arrows in panel A).
shows pictures of blood flow in tumors by sonography,
illustrating the effect of anti-PLVAP MECA32 monoclonal antibody (mAb)
conjugated with recombinant human tissue factor (MECA32-TF) on tumor blood
flow. Tumor blood flow was assessed with 3D Power Doppler sonography. Power
Doppler was performed 48 hours before and 48 hours after the treatment. The result
show that blood flow was significantly diminished in the group treated with 20µg
MECA32-TF (white arrows) but not in the control group treated with 24µg
MECA32 mAb. Red blood flow signals were present inside tumors before
treatment.
is a line graph of tumor volume over time, illustrating the effect of
MECA32-TF infusion on tumor growth. The result shown in this figure are from
the same experiment described in SCID mice bearing Hep3B tumor
xenografts were treated by infusion of 20µg MECA32-TF into a tumor feeding
artery. The control group was treated with 24µg MECA32 mAb. Tumor volumes
were monitored using 3D sonography before and after treatment on day 0. One of
the mice in the control group died on day 20 after the initial treatment due to rapid
progressive tumor growth (†). The growth rates of the treatment group and the
control group were compared using linear mixed-effects model and were
significantly different (p=0.0002). The results of this study (FIGs. 7 and 8)
demonstrated that anti-PLVAP antibody conjugated with tissue factor was able to
block tumor blood flow and effectively inhibit tumor growth. Solid circle (•):
MECA32 mAb control (n=3); Cross (x): MECA32-TF treatment group (n=3).
is a picture providing diagrams of the structure of recombinant
anti-mouse PLVAP MECA32-Fab-TF and anti-human PLVAP CSRO2-Fab-TF
conjugates. The major difference between two anti-PLVAP Fab-TFs is that there is
a histidine-tag (His-tag) at the C-terminus of kappa light chain of MECA32-Fab-TF.
The histidine-tag was introduced for purification purposes. CSRO2-Fab-TF does
not require histidine-tag for purification.
is a line graph of OD405nm versus concentration of competing
antibody, illustrating MECA32-Fab-TF binding to mouse PLVAP by competitive
enzyme-linked immunoassay. ELISA plate wells were coated with recombinant
water soluble mouse PLVAP (2.5µg/ml) overnight. After blocking wells with buffer
containing bovine serum albumin, increasing concentrations of rat IgG (0.5µg/ml to
50µg/ml), MECA32-Fab-TF (0.5µg/ml to 50µg/ml) or MECA32 mAb (0.05µg/ml to
5µg/ml) were incubated with 0.25µg/ml of biotinylated MECA32 mAb. Binding of
biotinylated MECA32 mAb to PLVAP was measured with streptavidin-alkaline
phosphatase conjugate and chromogenic substrate. The results show that both
MECA32 mAb and MECA32-Fab-TF could compete with biotinylated MECA32
mAb for binding to mouse PLVAP, but not rat IgG control. As expected MECA32
mAb was approximately one log more potent than MECA32-Fab-TF for their
binding to mouse PLVAP, because the binding affinity of MECA32-Fab-TF is one
log lower than MECA32 mAb.
is a set of micrographs illustrating induction of Hep3B tumor
xenograft tumor necrosis by MECA32-Fab-TF (3, 6 and 12 µg) and control
MECA32 monoclonal antibody (12 µg). After infusion of MECA32-Fab-TF or
MECA32 mAb into tumor feeding artery, tumor xenografts were harvested 72 hours
after treatment and submitted for histological sections. The micrographs shown
illustrate massive necrosis of tumor (areas highlighted in pink) for all three different
doses of MECA32-Fab-TF. The remaining areas of viable tumor tissue are
highlighted in blue. All three tumors from the control group were 100% viable as
shown at the right column. Areas of necrosis of the treated tumors were calculated
by weighing cutouts of whole tumor images and necrotic areas, and were expressed
in percentage. Tumor boundaries are outlined with red and blue lines. There were
three mice in each treated group.
is a set of micrographs illustrating induction of Hep3B tumor
xenograft tumor necrosis by MECA32-Fab-TF (2.5, 5 and 10 µg) and control
MECA32 monoclonal antibody (10 µg). This study was similar to that shown in
. The main difference was the doses used to treat Hep3B tumor xenografts.
Again, tumors were harvested 72 hours after infusion into tumor feeding arteries and
submitted for histology sections. There were two mice in each group. Again, the
results showed significant tumor necrosis at all three doses after treatment. Necrotic
area in each treated tumor highlighted in pink was determined in percentage of
whole tumor section as described in . Tumor boundary is outlined with red
and blue lines. Areas of square were magnified (40x and 100x) and shown on the
right to demonstrate residual viable tumor cells (arrows). Percentage shown in each
tumor is the relative necrotic area to total tumor cross section.
FIGs. 13A and 13B are sets of micrographs illustrating changes of tumor
histology at 2, 4, 24, 48 and 72 hours after infusion of 10µg MECA32-Fab-TF. The
sections were stained with hematoxylin and eosin. In A, appearance of
fibrin thrombi (arrows) in blood vessels was noticed at 2 hours after infusion. The
number of blood vessels containing fibrin thrombi became more prominent
thereafter (arrows). No fibrin thrombi were observed in tumor blood vessels before
treatment (0 hour). Tumor tissue became completely necrotic at 48 and 72 hours.
Photomicrographs were taken at 100x magnification. In B, tumor cells show
slight separation with increased clear space between each other at 4 hours after
treatment. This change became more prominent at 24 hours. Frank necrosis with
loss of blue nuclear staining became apparent 48 hours after treatment, and became
more pronounced at 72 hours. The photomicrographs were taken at 200x
magnification.
is a set of photographs of tumor blood flow by sonography,
illustrating changes of tumor blood flow at different time points after infusion of 10
µg MECA32-Fab-TF. Tumor blood flow was assessed by 3D power Doppler before
and after treatment. There were two mice at each time point. Mice were euthanized
immediately after post-treatment 3D power Doppler study. Sonographs with power
Doppler signal (red) from one of the two mice at each time point before and after
treatment were shown here. Sonographs of tumors collected 48 hours before
treatment are shown on the left. After treatments are shown on the right, in which
tumor blood flow signals disappeared at 2 hours and persisted up to 72 hours after
treatment.
is a line graph of tumor volume over time, illustrating the effect
of intra-arterial infusion of MECA32-Fab-TF on growth of Hep3B tumor
xenografts. SCID mice bearing Hep3B human hepatocellular carcinoma xenografts
were treated with single infusion of 10 µg control MECA32 monoclonal antibody
(mAb) and 5 or 10 µg MECA32-Fab-TF on day 0. Tumor volumes were measured
using 3D sonography -2, 9, and 24 days from treatment on day 0. The average
initial tumor volumes measured on day -2 for MECA32 mAb control group and two
MECA32-Fab-TF treatment groups (10 and 5 µg) were 26.8, 29.0 and 23.1 mm ,
respectively. The tumor volume of each group is expressed as mean ± SD in mm .
The different growth rates of the treatment groups and the control group were
compared using linear mixed-effects model. P values were 0.0003 and 0.0001 for
comparisons between the 5µg treatment group and the control group, and the 10µg
treatment group and the control group, respectively.
A shows photographs and weights of the excised Hep3B tumors
days after initial treatment with MECA32 mAb or MECA32-Fab-TF (panel A).
The average tumor weights of each treatment group and the control groups
(mean±SEM) are shown in B as bar graphs. Tumor weights of each
MECA32-Fab-TF treatment group were compared with those of the control group
by t-test. P values were 0.01 and 0.03 for 10 µg and 5 µg MECA32-Fab-TF
treatment groups, respectively.
is a line graph of tumor volume over time, illustrating the effect
of systemic administration of MECAFab-TF on growth of Hep3B tumor
xenografts. Mice were treated with systemic administration of MECA32-Fab-TF for
treatment or phosphate buffered saline for control through a tail vein. Tumor growth
was monitored by measurement of three perpendicular dimensions with a caliper
before and after treatment on day 0. The final tumor volumes of all three groups
were compared by ANOVA. The result showed no significant difference among all
three groups with p value of 0.96. The average tumor volumes (mean±SEM) of
these three groups were 1844±840 mm (control), 1867±602 mm (20 µg MECA32-
Fab-TF) and 1617±559 mm (10 µg MECA32-Fab-TF).
is a set of micrographs, illustrating immunohistochemical
staining of sections from three different cases of human hepatocellular carcinomas
(HCC) and adjacent non-tumorous liver tissues with biotinylated CSRO2-Fab-TF.
All blood vessels in three HCC sections shown on left column were stained
positively (arrows) for PLVAP with brown color precipitate in vascular endothelial
cells. In contrast, endothelial cells lining liver sinusoid, portal vein and hepatic
veins (diamonds) showed negative staining without detectible PLVAP expression.
is an annotated sequence of SEQ ID NO: 2, wherein the
extracellular region of the complete NP_112600.1 (hPLVAP) is underlined.
is an annotated sequence of SEQ ID NO: 3 >KFCC-
GY4_VH_domain_4, wherein the CDRs are underlined.
is an annotated sequence of SEQ ID NO: 4 >KFCC-
GY4_VL_domain_9, wherein the CDRs are underlined.
is an annotated sequence of SEQ ID NO: 5 >KFCC-
GY5_VH_14, wherein the CDRs are underlined.
is an annotated sequence of SEQ ID NO: 6 >KFCC-
GY5_VL_19, wherein the CDRs are underlined.
is an annotated sequence of SEQ ID NO: 23, the recombinant
CSR02-Fd-TF insert, wherein the VH domain of Fd (1-114) is underlined, the CH1
domain of Fd (115-216) is bolded, the hinge (217-224) is double-underlined, the
linker (225-239) is represented by lowercase letters, and the extracellular domain of
human tissue factor (240-458) is italicized.
DETAILED DESCRIPTION OF THE INVENTION
A description of example embodiments of the invention follows.
Definitions of certain terms will be adhered to throughout the application.
Conjugates and compositions provided by the invention
The invention provides conjugates comprising a coagulating agent
conjugated to an antibody, where the antibody specifically binds an extracellular
domain epitope of a mammalian PLVAP protein. Such conjugates are referred to as
“conjugate(s) provided by the invention,” “conjugate(s) of the invention,” and the
like, while compositions containing them, such as pharmaceutical compositions, are
known as “composition(s) provided by the invention” and the like. The application
may also refer to “conjugates(s) and composition(s) provided by the invention” to
describe “conjugate(s) provided by the invention” and “composition(s) provided by
the invention.”
A “coagulating agent” promotes the formation of a thrombus in vivo in
the circulatory system of a mammal, i.e., in the presence of a functional coagulation
cascade and platelet activation pathway. A peptide “coagulating agent” is a
“coagulating protein.” Exemplary elements of the coagulation cascade include, e.g.,
Tissue factor, Hageman factor (human GeneID No. 2161), plasma thromboplastin
(human GeneID No. 2160), thrombin (human GeneID No. 2147), Christmas factor
(human GeneID No. 2158), stable factor VII (human GeneID No. 2155), and fibrin
stabilizing factor (human GeneID Nos. 2162, 2165); see also human GeneID Nos.
2156, 2157, and 2159. Exemplary elements of the platelet activation pathway
include, e.g., ADP, serotonin, platelet-activating factor (PAF; human GeneID No.
7941), Von Willebrand factor (vWF; human GeneID No. 7450), platelet factor 4
(human GeneID No. 5196), and thromboxane A (TXA )). The coagulating agent
can be a component or product of the coagulation cascade (i.e., a component of the
intrinsic, extrinsic, or common pathway) or platelet activation pathway, as well as
heterologous proteins, including coagulating venoms, such as convulxin (see, e.g.,
uniprot IDs O93426 and O93427 for reference protein sequences for the α and β
subunits, respectively) and Russellysin (see, e.g., uniprot Q7LZ61), provided that
the agent promotes thrombogenesis, e.g., in the presence of a functional coagulation
cascade and platelet activation pathway.
In particular embodiments, the coagulating agent is a coagulating protein.
The coagulating protein can be in the conjugate as a monomer, or an oligomer, such
as a dimer, or trimer; or a polymer of higher order structure. In more particular
embodiments, the coagulating protein is a tissue factor. A “tissue factor,” also
known as factor III, thromboplastin, and CD142, is a receptor for factor VII that
promotes thrombogenesis. A tissue factor is exemplified by human GeneID No.
2152, and numerous homologues are known (see HomoloGene ID 1511), including
proteins from human: NP_001984.1, mouse: NP_034301.3, chimp:
XP_001156450.1, and dog NP_001019811.1. The human protein includes motifs
such as a pair of fibronectin type 3 domains (cl00065) conserved amongst
homologues, as well as a pair of WKS motifs (Uniprot P13726.1), and an interferon-
binding region (conserved domain CDD:204189). In particular embodiments, the
tissue factor is a soluble, extracellular portion of tissue factor, exemplified by SEQ
ID NO: 1, which is amino acid 33-251 of NP_001984.1, and corresponding
sequences as identifiable by alignments with homologous sequences from other
organisms, as well as functional variants thereof, including substitutions and
truncations (e.g., of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 residues, or more). In some
embodiments the tissue factor comprises an amino acid sequence at least 40, 45, 50,
55, 60, 65, 70, 75, 80, 85, 90, 95, 96, 97, 98, 99%, or more identical to SEQ ID NO:
1; more preferably at least 80, 85, 90, 95, 96, 97, 98, 99%, or more identical to SEQ
ID NO: 1; still more preferably at least 95, 96, 97, 98, 99%, or more identical to
SEQ ID NO: 1. Variant tissue factors, with altered levels of activity, can be used in
the invention as well, either as monomers, or, in some embodiments, multimers,
such as dimers. These include the “coagulation-deficient” tissue factor, as described
in U.S. Patent No. 6,156,321, incorporated by reference in its entirety, which are
100-fold, or more, less active than native tissue factor, e.g., with regard to activating
Factor VII.
“Antibody” encompasses both immunoglobulins (as well as antigen-
binding fragments thereof) and non-immunoglobulin scaffolds that can be adapted
and used similar to immunoglobulins—so-called antibody-mimetics. Exemplary
antibody mimetics include those based on fibronectin 3 domains (Fn3 domains; also
known as monobodies; see, e.g., Koide and Koide, Methods Mol. Biol. 352: 95–109
) (2007)), Z domains of protein A (also known as affibodies; see, e.g., Nygren FEBS
J. 275 (11): 2668–76 (2008), gamma-B crystalline or ubiquitin (afflins; see, e.g.,
Ebersbach, et al.. J. Mol. Biol. 372 (1): 172–85 (2007)), lipocalins (anticalins; see,
e.g., Skerra, FEBS J., 275 (11): 2677–83(2008)); A domains of membrane receptors
(avimers; see, e.g., Silverman, et al. Nat. Biotechnol. 23 (12): 1556–61 (2005));
ankryn repeats (darpins; see, e.g., Stumpp et al., Drug Discov. Today 13 (15–16):
695–701 (2008)); SH3 domain of Fyn (fynomers; see, e.g., Grabulovski et al., J
Biol Chem 282 (5): 3196–3204(2007)), and Kunitz type domains (Kunitz domain
peptides; see, e.g., Nixon and Wood CR, Curr Opin Drug Discov Devel 9 (2): 261–8
(2006)).
Antibodies for use in the conjugates provided by the invention
specifically bind an extracellular domain epitope of a mammalian PLVAP protein.
Exemplary extracellular domain epitopes of a mammalian PLVAP include regions
corresponding to (e.g., as evaluated by sequence alignments, such as BLASTp,
ClustalW, COBALT, et cetera, using default parameters) to the extracellular domain
of a PLVAP (from about amino acid 49 and on in SEQ ID NO: 2), or, more
particularly, in the C-terminus of PLVAP, such as: from about amino acid 238 and
on in SEQ ID NO: 24 (NP_115774.2, the mouse PLVAP reference sequence, e.g.,
such as a peptide consisting of the amino acid sequence of amino acids 238-413 of
SEQ ID NO: 24), or sequences contained in about amino acids 370 to about 442 of
SEQ ID NO: 2, (the human PLVAP reference sequence, NP_112600.1), such as
amino acids 378 to 404 of SEQ ID NO: 2 or amino acids 431 to 442 of SEQ ID NO:
2. In particular embodiments, the antibodies for use in the conjugates provided by
the invention specifically bind to an epiotope in amino acids 378 to 404 of SEQ ID
NO: 2 or amino acids 431 to 442 of SEQ ID NO: 2; and/or a corresponding primate
homologue of either of these, such as corresponding sequences from Macaca
fascicularis (XP_005588437.1) and Macaca mulatta (AFH29537.1).
In particular embodiments, the antibody is an immunoglobulin.
“Immunoglobulin” refers to both full-length immunoglobulins, as well as antigen-
binding fragments of immunoglobulins, such as Fab, F(ab')2, Fv, scFv, Fd, dAb, and
other immunoglobulin fragments that retain antigen-binding function.
Immunoglobulins will have at least 3 CDRs (complementarity determining regions)
in their antigen-binding domain, and, in more particular embodiments, 4, 5, or 6
CDRS, and still more particularly, 6 CDRs in an antigen-binding domain.
Immunoglobulins for use in the invention include, for example, human, orangutan,
mouse, rat, goat, sheep, rabbit and chicken antibodies. Immunoglobulins may be
polyclonal, monoclonal, monospecific, polyspecific, non-specific, humanized,
camelized, single-chain, chimeric, synthetic, recombinant, hybrid, mutated, or
CDR-grafted. Particular immunoglobulins for use in the invention include those
with the CDRs of the antibodies produced by murine hybridoma KFCC-GY4
(ATCC Patent Deposit Designation PTA-9963) or murine hybridoma KFCC-GY5
(ATCC Patent Deposit Designation PTA-9964), or conservative substitutions
thereof, e.g., in particular embodiments, with up to about: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10,
11, 12, 13, 14, 15, 16, 17, or 18 conservative amino acid substitutions (more
particularly 1, 2, 3, 4, 5, or more substitutions) in the antigen-binding domain, e.g.,
up to about: 1, 2, 3, or 4 conservative substitutions in each CDR; more particularly
up to 1 or 2 conservative substitutions in each CDR. In certain embodiments, the
immunoglobulin comprises humanized heavy and light variable domains. The
KFCC-GY4 and KFCC-GY5 antibodies, including the amino acid sequences of their
variable domains and CDRs are described in U.S. Patent Application Publication
Nos. US 2011/0085973 (first describing the monoclonal antibodies, which were
generated in mouse) and US 2011/0262349 (describing particular chimeric and
humanized variants), both of which are incorporated by reference in their entirety.
See also SEQ ID NOs: 3-22, providing variable domain sequences, and identified
CDRs for these antibodies.
“PLVAP,” also known as plasmalemma vesicle associated protein, PV1,
FELS, and gp68, is a protein expressed in tumor vasculature, such as HCC tumor
vasculature, and is described in human GeneID No. 83483. PLVAPs have been
identified in several organisms (see HomoloGene ID 10578), such as: human
(NP_112600.1, see also SEQ ID NO: 2), chimp (XP_512490.3), mouse
(NP_115774.2), and dog (XP_541953.3) and comprise a PV-1 domain (pfam06637).
Antibodies that specifically bind a PLVAP , such as a mammalian PLVAP , in some
embodiments, bind an extra cellular domain of PLVAP, which corresponds to
approximately amino acids 49-442 or 51-442 of SEQ ID NO: 2. In particular
embodiments, the mammalian PLVAP comprises an amino acid sequence at least
50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 96, 97, 98, 99%, or more identical to SEQ ID
NO: 2 (or an extracellular domain thereof); more preferably at least 80, 85, 90, 95,
96, 97, 98, 99%, or more identical to SEQ ID NO: 2 (or an extracellular domain
thereof); still more preferably at least 95, 96, 97, 98, 99%, or more identical to SEQ
ID NO: 2 (or an extracellular domain thereof). In some embodiments, the PLVAP
protein includes substitutions (e.g., of 1, 2, 3, 4, 5, residues or more) and/or
truncations (e.g., of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 residues, or more), relative to SEQ ID
NO: 2, or an extracellular domain thereof.
A linker peptide for use consonant with the invention can couple the
antibody and coagulating agent, e.g., coagulating protein, by a peptide bond—e.g.,
the antibody (e.g., one of the variable domains of an immunoglobulin) and
coagulating protein can be expressed as a single polypeptide chain. The linker
peptide can vary in length from, e.g., about: 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, 25, 30, 35,
40, 45, or 50 amino acids, or more, e.g., about: 75, 100, 150, 200, 250, or 300 amino
acids. In some embodiments, the linker comprises a hinge region, analogous to the
cysteine-rich and proline-rich domains found in naturally-occurring
immunoglobulins, and optionally including a further linker peptide, such as (Gly -
Ser) , to space the antibody (e.g., immunoglobulin) and coagulating agent (e.g.,
coagulating protein).
Conjugates provided by the invention can optionally comprise a label,
such as a detectable label, such as a fluorescent, enzymatic, or radio label. In certain
embodiments, the conjugate provided by the invention is biotinylated.
In a related aspect the invention provides nucleic acids encoding the
conjugates provided by the invention, vectors containing the nucleic acids, and host
cells containing the nucleic acids and vectors. Exemplary nucleic acids include
those encoding proteins at least 80, 85, 90, 95, 96, 97, 98, 99%, or more identical to
a conjugate provided by the invention, including, in particular embodiments, the
conjugate having the amino acid sequence of SEQ ID NO: 23. In other
embodiments, the nucleic acid can hybridize under highly stringent hybridization
conditions to a nucleic acid encoding a conjugate provided by the invention.
“Highly stringent hybridization” conditions are: at least about 6X SSC and 1% SDS
at 65ºC, with a first wash for 10 minutes at about 42ºC with about 20% (v/v)
formamide in 0.1X SSC, with a subsequent wash with 0.2 X SSC and 0.1% SDS at
65ºC. In particular embodiments, a nucleic acid provided by the invention can be
codon modified, e.g., for the particular host cell used for production of the
conjugate. Vectors encoding a nucleic acid provided by the invention can contain
additional sequences required for, e.g., expression of a conjugate provided by the
invention (such as regulatory sequences, promoters, and enhancers) as well as
certain suitable ancillary sequences, such as one or more replication origins, one or
more selectable markers, and integration sequences (e.g., for integration into a host
genome, either by random integration, transposable elements, or site specific
integration, e.g., by homologous recombination, such as by targeted nucleases).
In related aspects, the invention provides methods of making the
conjugates provided by the invention, e.g., by culturing a host cell containing a
nucleic acid provided by the invention under conditions that support the expression
of the conjugate by the host (e.g., if a promoter is inducible, by adding the inducing
agent, et cetera), and then isolating the expressed conjugate. Suitable hosts include
bacteria (e.g., Escherichia coli) as well as eukaryotic cells, such as a fungus, such as
yeast, including budding yeast; an insect cell, such as Sf0, Sf21, or high five cells; or
mammalian cells, such as CHO, VERO, or COS cells, or mesenchymal stem cells
(MSCs).
The conjugates provided by the invention can usefully be formulated in
compositions, such as pharmaceutical compositions—e.g., where a conjugate
provided by the invention is compounded with a suitable carrier or excipient. Any
suitable pharmaceutical carrier can be used in the invention. In particular
embodiments, the carrier will promote the stability of the conjugate, e.g., when
lyophilized for storage or transportation, and support the stability of the conjugates
provided by the invention when in a solution, such as an aqueous solution after
reconstitution, consistent with best pharmaceutical practices. Pharmaceutical
compositions can include one or more of: a buffer (such as a histidine, phosphate, or
succinate buffer), a bulking or caking agent (such as glycine or sorbitol, or a sugar,
such as sucrose, dextrose, lactose, or fructose), a tonicity modifier (such as an
inorganic salt, such as sodium chloride, potassium phosphate, or sodium phosphate),
a preservative, wetting agents, emulsifiers, et cetera.
In particular embodiments, the conjugates provided by the invention are
formulated in a pharmaceutical composition suitable for direct administration to
HCC tumor vasculature, e.g., through transvascular administration, such as
transarterial administration. In particular embodiments, the conjugates provided by
the invention can be formulated in a lipidol oil. In other embodiments, the
conjugates provided by the invention can be formulated with microparticles with an
average diameter of between about 45 µm and about 90 µm, such as IVALON®
embolic particles. Injection with presence of such excipients may increase the
availability of the conjugates provided by the invention, when administered to the
treated tumors, e.g., by inducing stasis of blood within tumor blood vessels after
injection.
In some embodiments, the compositions provided by the invention can
include a compatible water-soluble contrast medium (for radiographic, MRI, or
ultrasound applications) to, for example, allow assessment of the distribution of the
conjugate provided by the invention in the treated tumors by fluoroscopy and/or to
assess the completeness of a tumor exposed to the conjugates provided by the
invention.
The pharmaceutical compositions provided by the invention can be
prepared in dosage form(s) for distribution and administration to a subject in need
thereof (consonant with the methods provided by the invention), including kits of
multiple dosage forms, which can contain one or more containers filled with one or
more of the ingredients of the pharmaceutical compositions of the invention.
Optionally associated with such container(s) can be a notice in the form prescribed
by a governmental agency regulating the manufacture, use or sale of
pharmaceuticals or biological products, that notice reflects approval by the agency
of manufacture, use of sale for human administration. The pack or kit can be labeled
with information regarding mode of administration, sequence of drug administration
(e.g., separately, sequentially or concurrently in the case of multi-agent kits), or the
like. The pack or kit may also include means for reminding the patient to take the
therapy. The pack or kit can be a single unit dosage of the combination therapy or it
can be a plurality of unit dosages. In particular, the compound(s) can be separated,
mixed together in any combination, present in a single form, e.g., vial or tablet. For
the purpose of this invention, unit dosage is intended to mean a dosage that is
dependent on the individual pharmacodynamics of each compound and administered
in FDA approved dosages in standard time courses.
The conjugates provided by the invention, the pharmaceutical
compositions provided by the invention, and kits provided by the invention
containing them therefore are useful in methods of treating a subject with a tumor
with PLVAP-positive vasculature, such as HCC, as well as methods of visualizing a
tumor with PLVAP-positive vasculature.
Treatment methods
The conjugates and compositions provided by the invention can be used
in methods of, for example: treating a tumor with PLVAP-positive vasculature (such
as HCC or glioblastoma), treating hepatocellular carcinoma (HCC), reducing tumor
volume of a tumor with PLVAP-positive vasculature, or inducing thrombosis and
tumor necrosis of a tumor with PLVAP-positive vasculature, in a mammalian
subject in need thereof. These methods comprise administering a therapeutically
effective amount of the conjugates provided by the invention or compositions
provided by the invention to the subject.
A “subject” refers to a mammal, more particularly, a human patient (male
or female), and in more particular embodiments, a human patient with HCC,
glioblastoma, or any tumor with PLVAP-positive vasculature. While subjects may
be of any stage of life and any age, e.g., neonate, infant, toddler, child, young adult,
adult, or geriatric; in particular embodiments the subject is an adult, e.g., a human
adult, i.e., about 18 years old, or older, e.g., about:18-70, 20-60, 25-55, 25-50, 30-
50, 25-65 years old, as well as greater than about: 30, 40, 50, 60, 70, 80 or 90 years
old. In more particular embodiments, the subject is 60 years old, or older, such as,
more particularly, 65 years old, or older. In still more particular embodiments, the
subject is between about 70 and about 79 years old.
As used herein, the terms “treat,” “treating,” or “treatment” mean to
counteract a medical condition (e.g., HCC or a tumor with PLVAP-positive
vasculature) so that the medical condition is improved according to a clinically-
acceptable standard. For example, an improvement in HCC includes reduced tumor
volume, reduced tumor blood flow, tumor necrosis and/or apoptosis, normalized
hepatic function, et cetera.
A “therapeutically effective amount” is an amount sufficient to achieve
the desired therapeutic or prophylactic effect under the conditions of administration,
such as an amount sufficient to treat HCC. The effectiveness of a therapy can be
determined by one skilled in the art using standard measures and routine methods.
In particular embodiments, the conjugate is administered at a dose of about 5 to
about 200 µg/ cm of tumor, more particularly about 10 to about 150 µg/cm of
tumor, and more particularly about 15 to about 100 µg/cm of tumor. Dosages found
to be effective in one organism, such as the mouse examples provided herein, can be
converted for use in another organism, such as humans, using known methodologies.
See, e.g., Reagan-Shaw et al., FASEB J. 22:659-61 (2008); Schein et al., Clin.
Pharmacol. Ther. 11: 3-40 (1970); and Freireich et al., Cancer Chemother. Reports
50(4):219-244 (1966). For example, human equivalent dosing (HED) in mg/kg
based on animal dosing can be given by the following equation: HED (mg/kg) =
animal human
animal dose (mg/kg) X (Km /Km ), where Km = weight/surface area (kg/
m ). Exemplary conversion factors based on the above equation are shown in Table
Table A
From: Mouse Rat Monkey Dog Human
(20 g) (150 g) (3.5 kg) (8 kg) (60 kg)
Mouse 1 0.5 0.25 0.17 0.08
Rat 2 1 0.5 0.25 0.14
Monkey 4 2 1 0.6 0.33
Dog 6 4 1.7 1 0.5
Human 12 7 3 2 1
The conjugates provided by the invention and compositions provided by
the invention can be provided (e.g., administered) to the subject by any suitable
means, including, in particular embodiments, intravascularly to the tumor of the
subject, e.g., the conjugate is infused directly into one or more tumor-feeding vessels
of the HCC.
Subjects treated by the methods provided by the invention may be
undergoing concurrent or sequential treatment with: one or more chemotherapeutic
agents, radio-therapy, intratumoral alcohol injection, surgery, cryotherapy, radio
frequency ablation, or a combination of one or more of the foregoing. In certain
embodiments, the one or more chemotherapeutic agents include a therapeutically
effective amount of sorafenib (see, e.g., PubChem 216239), bevacizumAb, or other
antiangeogenic therapeutic drugs. For combination methods, the conjugate provided
by the invention (or composition provided by the invention) can be administered
concurrently (either in a single composition or in separate compositions) or
sequentially (either before or after the other treatment).
Where the method employs a composition provided by the invention that
includes a contrast agent, the methods provided by the invention can, in some
embodiments, include the step of visualizing the tumor (e.g., HCC or glioblastoma)
using the contrasting agent, e.g., by x-ray (including CAT scan), MRI, or ultrasound.
Subjects can be administered the conjugates or compositions provided by
the invention in a single dose or, in other embodiments, in multiple doses, e.g., in 2,
3, 4, 5, 6, 7, 8, 9, 10 doses, or more. When administered multiple doses, the doses
can be administered over a period of 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 days; or 1, 2, 3, 4,
, or 6 weeks; or 1, 2, 3, 4, 5, or 6 months.
High risk groups for developing HCC can include subjects that: are
HBV-positive; are HCV-positive; have impaired liver function; have liver cirrhosis;
have mutations in one or more of TP53 (OMIM 191170), MET (OMIM 164860),
CTNNB1 (OMIM 116806), CASP8 (OMIM 601763), PIK3CA (OMIM 171834),
AXIN1 (OMIM 603816), PDGFRL (OMIM 604584), and APC (OMIM 611731);
alphaantitrypsin deficiency (OMIM 613490); hemochromatosis (OMIM 235200);
tyrosinemia (OMIM 276700); and combinations of the foregoing. Accordingly, in
certain embodiments, the methods provided by the invention entail the step of
providing a subject with (or suspected of having) HCC, who has one or more of
these mutations, e.g., the subject is identified as having one of the mutations (or any
mutation that is associated with increased pathogenicity of the HCC) before
administration of the conjugate provided by the invention.
The conjugates provided by the invention and compositions provided by
the invention can be administered to the subject (such as a human) by any suitable
route and by any suitable means. For example, the conjugate or composition can be
administered intravascularly to the HCC of the subject, e.g., by infusion directly into
one or more tumor-feeding vessels, such as a hepatic artery or a femoral artery or
through the hepatic portal vein. The conjugates provided by the invention and
compositions provided by the invention can be administered to the subject alone or
together (either in the same composition, or concurrent or sequential administration)
with one or more chemotherapeutic agents, such as one or more of sorafenib (see,
e.g., PubChem 216239), bevacizumAb, or other antiangeogenic therapeutic drugs.
In any of the methods provided by the invention the conjugate is
administered at a dose of about 5 µg/cm of tumor to about 200 µg/cm of tumor,
more particularly about 10 to about 150 µg/cm of tumor, and more particularly
about 15 to about 100 µg/cm of tumor. The conjugates provided by the invention or
compositions provided by the invention can be administered in a single dose, or in
multiple doses, such as 2, 3, 4, 5, 6, 7, 8, 9, 10 doses, or more. Multiple does can be
over any useful period, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 days; or 1, 2, 3, 4, 5, or 6
weeks; or 1, 2, 3, 4, 5, or 6 months.
EXEMPLIFICATION
PLVAP gene expression is restricted to vascular endothelial cells of HCC
and not in non-tumorous liver tissue. PLVAP protein is a structural protein of
vascular endothelia fenestrae and caveolae. It is not known to be involved in
signaling. Anti-PLVAP antibody treatment was recently reported to affect leukocyte
trafficking crossing vascular endothelial cells in mice.
In this patent application, we describe the development of a novel
therapeutic biologic for treatment of HCC by exploiting differential expression of
PLVAP in vascular endothelial cells of HCC not in non-tumorous liver tissue. For
our approach, we develop this therapeutic biologic by co-expressing human tissue
factor protein on anti-PLVAP antibody or its Fab fragment. Human tissue factor is a
potent trigger of blood coagulation. Infusion of such a therapeutic agent developed
by us into blood vessels of HCC can lead to its binding to tumor vascular endothelial
cells and trigger blood clot formation in all blood vessels of HCC. The thrombosis
of HCC tumor blood vessels leads to deprivation of tumor blood supply and
ischemic necrosis. Using a HCC xenograft model in SCID mice, we showed that
infusion into tumor feeding artery of the developed anti-PLVAP monoclonal
antibody, or its Fab fragment, with human tissue factor successfully induced massive
ischemic necrosis of the tumor xenografts and suppressed tumor growth. Systemic
administration of such a therapeutic agent through a peripheral vein was ineffective.
Thus, infusion of this novel agent into tumor feeding arteries is preferred to achieve
therapeutic effect.
Materials and Methods
Rat anti-mouse PLVAP MECA32 monoclonal antibody (mAb)
MECA 32 hybridoma was obtained from Developmental Studies
Hybridoma Bank at University of Iowa (Iowacity, IA). The hybridoma cells were
cultured in RPMI medium containing 10% low-IgG fetal bovine serum, 1%
GLUTA-Max (Life Technologies, Carlsbad, CA), 1% Antibiotics-antimycotics (Life
Technologies) and 1% HEPES (Life Technologies). Rat anti-mouse PLVAP
MECA32 mAb was purified from thick culture supernatant of MECA 32 hybridoma
cells using HiTrap Protein G column from GE Healthcare Life Sciences according to
the instruction of the manufacturer. The purified antibody was dialyzed into
phosphate buffered saline (PBS), pH 7.4. The concentration of antibody was
determined by absorbance at 280nm wave length using extinction coefficient of 1.37
for 1mg/ml.
Production of water-soluble extracellular domain of human tissue factor
protein
To produce recombinant water soluble extracellular portion of human
tissue factor protein (hTF), a PCR fragment for the extracellular domain of human
tissue factor cDNA (amino acid residues 33 to 251) was prepared from a full length
cDNA clone of human tissue factor (NM001993.2) (OriGene Corp., Rockville,
MD). Primers used for PCR contained restriction sequences for BamH1 and SalI at
the 5' end of both forward and backward primers, respectively. The amplified
cDNA fragment was inserted into pGEX -6P–1 plasmid (GE Heathcare Life
Sciences) and tagged with glutathione transferase (GST). The expression construct
described above was verified by DNA sequencing and transformed into Escherichia
coli strain SHuffle™ T7 Express (New England Biolabs, Inc. Ipswich, MA) for
production of hTF. The E. coli transformants were plated on selective medium.
Later, a colony of 1-2mm was selected randomly and inoculated into 4 ml of 2xYT
medium containing 100μg/ml ampicillin at 30°C and incubated in a 230 rpm
incubator shaker overnight. The following day, the overnight culture was inoculated
into 400 ml of 2xYT medium containing 100μg/ml ampicillin and continued to grow
at 30°C in a 230 rpm incubator shaker overnight. When the absorbance at 600 nm
reached about 0.6~0.8, Isopropyl β-Dthiogalactopyranoside (IPTG) was added to
a final concentration of 0.4 mM to induce protein production. Shaking was
continued at 30°C for about 20 hours. Following the induction with IPTG, the cells
were harvested by centrifugation (10,000 x g; 20 min) and subjected to lysis in 1x
PBS with 0.2% Tween 80 containing lysozyme and Benzonase Nuclease (Novagen)
at room temperature for 2 hours. Cell lysate was centrifuged at 10,000 rpm for 30
minutes at 4°C. Supernatant was collected and filtered as soluble fraction.
The recombinant human tissue factor tagged with GST (GST-hTF) was
purified from GSTrap FF column (GE Helathcare Life Sciences, Piscataway, NJ)
according to the instruction of the manufacturer. The eluted fractions containing the
GST-hTF were identified with SDS-polyacrylamide gel electrophoresis (SDS-
PAGE), pooled and dialyzed into PBS. The concentration of the purified protein
was determined using Bradford protein assay (Bio-Rad laboratories, Hercules, CA )
and bovine serum albumin as standard. The purified GST-hTF showed a protein
band with expected molecular weight of 50 kDa in SDS-PAGE gel (10%
polyacrylamid) (. The tissue factor activity of the purified protein was
assayed against a commercial human tissue factor using a chromogenic assay. The
purified GST-hTF was assayed against a commercial hTF standard and had hTF
activity of 3ug per microgram protein. The procedure of this hTF activity assay is
detailed in a later section.
Conjugation of recombinant GST-hTF to rat anti-mouse PLVAP MECA32
monoclonal antibody
First, the purified MECA32 mAb was dialyzed in 0.1 M MES buffer
containing 0.5M NaCl at pH 6.0. MES is 2-(N-morpholino) ethanesulfonic acid.
The antibody was adjusted to 1 mg/ml using the same MES buffer. To 1 ml of
MECA32 mAb, 1.2 mg EDC (1-Ethyl[3-dimethylaminopropyl]carbodiimide
hydrochloride) and 3.3 mg of sulfo-NHS (N-hydroxysulfosuccinimide) were added.
After gentle vortexing to dissolve the added reagents, the mixture was incubated at
room temperature for one hour. Zeba desalting column pre-equilibrated with PBS
coupling buffer was used to recover activated MECA32 mAb. PBS coupling buffer
consisted 140 mM NaCl, 10 mM sodium phosphate and 3 mM KCl at pH 7.4-7.5.
Next, the equal number of GST-hTF (0.33mg in 0.66ml) was added to the activated
MECA32-mAb. The mixture was incubated on a rotary mixer for 3 hours at room
temperature. The reaction was then quenched by addition of hydroxylamine to a
final concentration of 10 mM. The antibody conjugated with human tissue factor
protein was dialyzed against 1x phosphate buffered saline extensively to remove all
small organic chemicals. The concentration of antibody was determined by
absorbance at 280nm. The extinction coefficient of 1.37 for 1 mg/ml was used for
determination of antibody concentration. The antibody conjugated with human
tissue factor was measured for the tissue factor activity using a chromogenic assay.
The recombinant human tissue factor purchased from R&D Systems (Minneapolis,
MN) was used as a standard for the assay. The purified TF conjugate of MECA32
monoclonal antibody (MECA32-TF) was assayed for binding to mouse PLVAP and
the presence of human tissue factor on the antibody bound to mouse PLVAP (FIG.
Development of a plasmid construct to express Fab fragment of MECA32 anti-
mouse PLVAP monoclonal antibody co-expressing hTF (MECA32-Fab-TF)
Preparation of a plasmid construct to produce MECA32-Fab-TF was
accomplished in four steps. The first step was to prepare cDNAs of variable
domain of MECA32 mAb light chain (VL) and variable domain of MECA32 mAb
heavy chain (VH), and determine their DNA sequences for preparation of primers to
be used in the second step. The second step was to prepare full length cDNA for
kappa light chain of MECA32 mAb with a His-tag at the carboxyl terminus, and
inserted into pET26b plasmid vector. The third step was to prepare a cDNA of
VH1 and CH1 domains (Fd) plus hinge region of MECA32 mAb heavy chain with a
linker sequence at the 3' end, and cDNA for hTF and a linker sequence at the 5' end.
The overlapping PCR was then used to stitch two cDNAs together. This cDNA of
MECA32-Fd-hinge-linker-TF was inserted into pET26b plasmid vector. The
fourth step was to construct a bicistronic plasmid vector from the plasmids prepared
from the second and the third steps. These four steps are described in more details
below and summarized in FIGs. 3A and 3B.
First Step: Cloning cDNAs of VL domain of MECA32 mAb kappa light chain and
VH domain of MECA32 mAb heavy chain for nucleic acid sequencing
The cDNAs coding variable domains of MECA32 mAb light chain (VL)
and heavy chain (VH) were prepared using FirstChoice RLM-RACE kit (Ambion,
Inc., Austin, TX) according to manufacturer’s instruction. Briefly, total RNA
isolated from MECA32 hybridoma was used as template to amplify variable domain
of light (VL) and heavy chains (VH) by reverse transcription PCR using primers
complementary to the nucleotide sequences of the constant domain of the kappa
light chain next to VL domain (5’ TGTCCTGATCAGTAACACTGTCC3’) (SEQ
ID NO: 27) and CH1 domain of the heavy chain next to VH domain
(5’TGAGAGTGTAGAGTCCAGACTGCAGG3’) (SEQ ID NO: 28), separately.
PCR products were analyzed and isolated from the 1.5 % agarose gel
using the Qiaquick gel extraction kit (Qiagen, Mississauga, Ontario, Canada). The
purified PCR fragments were inserted into the plasmid vector, pGEM-T-easy
(Promega, Madison, WI, USA) and transformed into Escherichia coli strain YE707-
J (Yeastern Biotech, Taipei, Taiwan). Plasmids containing inserts of the VL and the
VH domains were prepared from the transformed E. coli and used for determination
of DNA sequences of the VL and VH domains. The sequences then were used to
design primers to be used in the second and the third steps.
Second Step: Preparation of a cDNA consisting of MECA32 mAb kappa light
chain and His-tag, and inserting it into pET-26b plasmid vector
The sequence of the VL chain from the first step was used to design
appropriate primer for obtaining full length kappa light chain cDNA sequence of
MECA32 antibody. First, full-length kappa chain cDNA of MECA32 mAb was
generated by RT-PCR from total RNA of MECA32 hybridoma cells using primers
listed below:
Forward primer: 5’GATCCTGACATCCAGATGACCCAGACTCC3’ (SEQ ID
NO: 29) and
Reverse primer: 5’CACACTCATTCCTGTTGAAGCTCTTG3’ (SEQ ID NO: 30).
The purified PCR fragment with BamHI and Sal I restriction sites was
inserted into the plasmid vector pET26b with a (His) -tag at the carboxyl terminus of
the CK domain and this plasmid was designated as pET26b-M32K ().
Third Step: Preparation of MECA32-Fd-hinge-linker-TF cDNA and inserting
into pET26b plasmid vector
We first prepared a cDNA consisting of MECA32 mAb Fd, hinge region
plus and linker sequence by PCR using cDNA template from MECA32 hybridoma
cells and the following primer pair:
Forward primer: 5’GACATCCAGATGACCCAGACTCC3’ (SEQ ID NO: 31)
Hinge linker Reverse primer:
’AGAGCCACCTCCGCCTGAACCGCCTCCACCTGTACATCCACAAGGATT
GCATTCC3’ (SEQ ID NO: 32).
Next, we prepared a cDNA consisting of (Gly4Ser)3 linker sequence and
extracellular domain of human tissue factor (AA. 33-251) (hTF) by PCR using
cloned hTF cDNA template and the following primer pair:
hTF linker forward primer:
’GGCGGAGGTGGCTCTGGCGGTGGCGGATCGTCAGGCACTACAAATACT
GTGG3’ (SEQ ID NO: 33) and
TF reverse primer: 5’CAGTGTGAGGTGCAACTGGTGGAG3’ (SEQ ID NO:
34).
Two PCR products were stitched by overlapping extension. The final
fused PCR product was inserted into pET-26b vector. This vector was designated as
pET26b-M32-Fd-TF ().
Fourth Step: Construction of a biscistronic plasmid vector containing both
MECA32 Fd-hinge-(Gly Ser) linker-TF and MECA32 kappa light chain with a
His-tag
We generated a DNA fragment by PCR using pET26b-M32-Fd-TF as a
template and the following primer pair:
26b-RBS-F: 5' ACAATTCCCCTCTAGATTTTGTTTAACTTTAAGAAGGAGA 3'
(SEQ ID NO: 35) and
26b-Termination-R:
' CAAAATTATTTCTAGATTTCGGGCTTTGTTAGCAGCCGG 3' (SEQ ID NO: 36).
This DNA fragment included a ribosome binding sequence (rbs), VH1
and CH1 of MECA32 mAb heavy chain, hinge region, linker sequence, hTF, and a
stop codon. This fragment was then inserted into Xba I restriction site of pET26b-
M32K. The sequence of the entire insert was verified by DNA sequencing using the
dye-deoxy method. This plasmid construct was designated as pET26b MECA32-
Fab-TF () and transformed into the E. coli SHuffle T7 Express strain (New
England Biolabs Corp.) for protein expression. The diagrams summarizing the
construction steps of this bicistronic plasmid expression vector for production of
MECA32-Fab-TF is shown in and 3B.
Production of Fab of MECA32 anti-mouse PLVAP monoclonal antibody co-
expressing human tissue factor (MECA32-Fab-TF)
To produce MECA32-Fab-TF, a colony (1-2mm) of fresh E. coli culture
was inoculated into 4 ml of 2xYT medium containing 30μg/ml kanamycin at 30°C,
230 rpm overnight. Next morning, the overnight culture was inoculated into 400 ml
of 2xYT medium containing 30μg/ml kanamycin and continued to grow at 30°C,
250 rpm. When the absorbance at 600nm reached ~0.6-0.8, isopropyl β-D
thiogalactopyranoside (IPTG) was added to a final concentration of 0.4 mM for
induction of recombinant protein production. Shaking was continued at 30°C for
about 20 h.
The cells were harvested by centrifugation at 10000 x g for 20 min at
room temperature and used to isolate inclusion bodies. The cell paste was
suspended in 4 ml of 10 mM Tris/HCl, pH 7.5, containing 150 mM NaCl, 1 mM
MgCl2, 0.17 mg/ml PMSF and 2 mg/ml hen's-egg white lysozyme (Sigma).
Benzonase (250 units; EM Science) was added and the suspension was mixed gently
at room temperature for 1.5 hour then centrifuged at 12000 x g for 15 min. The
pellet was resuspended in 10 mM Tris/HCl, pH 7.5, containing 1 mM EDTA and 3
% Nonidet P40 (2 ml), sonicated for 1 min at 50 % power and centrifuged at 12000
g for 20 min. The pellet was re-suspended in water, sonicated for 20-30 seconds at
50 % power and centrifuged at 12000 x g for 20 min. The wash with water was
repeated, and the final pellet, highly enriched for the inclusion bodies, was
suspended in buffer containing 6 M guanidinium chloride, 0.5 M NaCl, 20 mM
phosphate and 10 mM 2-mercaptoethanol, pH 8 by gentle mixing at room
temperature overnight. The solution was held at room temperature overnight then
diluted to a protein concentration of about 1 mg/ml in 6 M urea/50 mM Tris/HC1,
pH 8 and dialyzed at 4°C overnight against 10-20 volumes of the same buffer.
Then, the dialysis was changed to a buffer containing 2 M urea, 50 mM Tris/HCl,
300 mM NaCl, 2.5 mM GSH, 0.5 mM GSSG, pH 8 (folding buffer). After dialysis
for 2 days, the buffer was replaced with fresh folding buffer and the dialysis was
continued for 2 more days. Next, dialysis buffer was changed to a buffer of 1M
urea, 50mM Tris-HCl, 300mM NaCl pH8 and the dialysis was continued for one
more day. The dialysis was then carried out in the same buffer with sequentially
reduced concentrations of urea from 0.8M urea for 6 hours, 0.56M urea overnight,
and 0.28M urea for 6 hours. Finally, the dialysis was carried out in folding buffer
without urea and continue overnight. The refolded supernatant was loaded onto a
nickel nitrilotriacetic acid (Ni-NTA; GE Healthcare) column and eluted with
500mM immidazol in 50 mM sodium phosphate and 0.3M NaCl at pH7.0.
Recombinant MECA32-Fab-TF was further purified by HiLoad 16/60 Superdex 75
prep grade (GE Healthcare) gel filtration column chromatography. Eluates
containing target MECA32-Fab-TF were analyzed by SDS-PAGE and pooled.
MECA32-Fab-TF was characterized by ELISA to confirm binding to mouse
PLVAP. Tissue factor specific activity of MECA32-Fab-TF was measured using a
chromogenic TF assay.
Development of plasmid construct to express recombinant Fab fragment of
CSRO2 anti-human PLVAP monoclonal antibody co-expressing water-soluble
human tissue factor (CSRO2-Fab-TF)
We also produced recombinant anti-human PLVAP CSRO2-Fab-TF
protein similar to MECA32-Fab-TF. This protein was developed based on the anti-
human PLVAP mAb CSRO2. The structure of this recombinant protein was
substantially similar to MECA32-Fab-TF described above, except for the different
Ab domains and absence of His-tag at the carboxyl end of the kappa light chain.
His-tag was eliminated because his-tag was not required for purification of CSRO2-
Fab-TF. CSRO2-Fab-TF was purified by using anti-human kappa light chain
KappaSelect affinity column chromatography (GE Healthcare Life Sciences,
Piscataway, NJ). CSRO2 mAb is a humanized monoclonal antibody against human
PLVAP.
The procedure used to prepare the plasmid construct for production of
CSRO2-Fab-TF was similar to the making of the plasmid construct for MECA32-
Fab-TF with some modification. The first step described earlier for cloning cDNAs
to obtain DNA sequences of 5'-ends of antibody heavy chain and light chain was be
skipped, because cDNA sequences for CSRO2 mAb heavy chain and light chain
were already known. Therefore, only three steps were required to prepare CSRO2-
Fab-TF expression construct. These three steps are described below.
First Step: Insertion of CSRO2 mAb light chain cDNA into pET26b plasmid
vector
Total RNA from NS0 cell line producing CSR02 mAb was reverse-
transcribed to cDNA using oligo-dT as primer. Kappa light chain cDNA of CSR02
was generated by PCR using the oligo-dT-primed cDNA as template and the primer
pair shown below:
CSR02-VK3F-26b F Nde I forward primer:
' TATGGATGTTGTGATGACCCAATCTCCA 3' (SEQ ID NO: 37)
Kappa-R-26b-Not I reverse primer: 5' GGCCGCTAACACTCTCCCCTGTTG 3'
(SEQ ID NO: 38).
The purified PCR DNA fragment for CSRO2mAb light chain was then
inserted into the Nde I and Not I sites of plasmid vector pET26b to generate
pET26b-cVK3.
Second Step: Construction of a pET26b plasmid vector inserted with cDNA for
expression of a fusion polypeptide comprised of VH1, CH1 and hinge region of
CSRO2 mAb plus (Gly Ser) linker sequence and extracellular domain of human
tissue factor (AA. 33-251) (hTF)
This plasmid was constructed by PCR using cDNA prepared from NS0
cell line and cloned human tissue factor cDNA as templates. The following primer
pairs were used for PCR:
I) Primer pair for VH1-CH1-hinge region of CSRO2 mAb heavy chain and
linker sequence:
VH5-pro26b-NdeI-F forward primer:
' TATGCAGGTCCAACTGGTGCAGTCTGG 3' (SEQ ID NO: 39) and
Hinge linker R:
' AGAGCCACCTCCGCCTGAACCGCCTCCACCTGGGCATGATGGGCATGG
GGGACC 3' (SEQ ID NO: 40).
II) Primer pair for linker sequence-hTF- plus restriction site for insertion:
hTF linker F:
' GGCGGAGGTGGCTCTGGCGGTGGCGGATCGTCAGGCACTACAAATACT
GTGG 3' (SEQ ID NO: 41)
hTF R-Not I: 5' GGCCGCTATTCTCTGAATTCCCCTTTCTCCTGG 3' (SEQ ID
NO: 42).
The PCR fragments generated from the two PCR reactions described
above were further fused and amplified by overlapping extension. The fused cDNA
was inserted into pET26b plasmid vector which was designated as pET26b-VH5-
Fd-TF.
Third Step: Construction of a biscistronic plasmid vector containing cDNAs for
both CSRO2 mAb Fd-hinge-(Gly4Ser)3linker-TF and CSRO2 mAb kappa light
chain
We generated a DNA fragment by PCR using pET-26b-VH5-Fd-TF as
template and the following primer pair:
26b-RBS-F: 5' ACAATTCCCCTCTAGATTTTGTTTAACTTTAAGAAGGAGA 3'
(SEQ ID NO: 43) and
26b-Termination-R:
' CAAAATTATTTCTAGATTTCGGGCTTTGTTAGCAGCCGG 3' (SEQ ID NO: 44).
The amplified DNA fragment included a ribosome binding site (rbs);
VH1, CH1 and hinge sequence of CSRO2 heavy chain; linker sequence; soluble
human tissue factor; and a stop codon. This DNA fragment was inserted into the
Xba I site of pET26b-cVK3 vector to derive a new bicistronic plasmid vector
designated as pET26b CSR02-Fab-TF (. This plasmid was used to express
both kappa light chain and fusion heavy chain under the control of a single
promoter. The sequence of the entire insert was verified by DNA sequencing using
the dye-deoxy method.
Production of recombinant Fab fragment of CSRO2 anti-human PLVAP
monoclonal antibody co-expressing water-soluble human tissue factor (CSRO2-
Fab-TF)
Expression of recombinant CSR02-Fab-TF protein. Transformation of
Escherichia coli Shuffle T7 Express (New England Biolabs) was performed by
incubating competent cells with pET-26b CSR02-Fab-TF plasmid DNA on ice for 5
min, heating for exactly 30 seconds in a 42°C water bath and followed by placing on
ice for 2 minutes. Prior to plating on selective medium, the transformants were
incubated at 30°C while shaking at 250 rpm with SOC medium (0.5% Yeast Extract;
2% Tryptone; 10 mM NaCl; 2.5 mM KCl; 10 mM MgCl ; 10 mM MgSO ; 20 mM
Glucose) for 60 min. Expression of CSR02-Fab-TF was induced with 0.05 mM of
isopropyl-ß-D-thiogalactopyranoside for 16 hours at 30°C or 37°C. Following the
induction, the bacterial cells were subjected to lysis by in 1x PBS with 0.2% Tween
80 in the presence of lysozyme and Benzonase Nuclease at room temperature for 2
hours. Cell lysate was harvested by centrifuging at 10000rpm for 30 minutes at 4°C.
Supernatant was collected and filtered to isolate the soluble fraction.
Purification of CSR02-Fab-TF by KappaSelect and Capto
AdhereMmultimodal Column Chromatography. KappaSelect column (1ml) was
equilibrated with phosphate buffered saline (PBS), pH 7.4 (0.01M phosphate buffer,
0.0027M KCl, 0.14M NaCl). E. coli cell lysates containing CSR02-Fab-TF was
loaded at a flow rate1 ml/min. After application of samples, the column was washed
with the equilibration buffer till OD280 dropped to baseline. The rest of bound
proteins were eluted with 0.1M glycine buffer, pH 2.7 containing 0.25 M sucrose.
The eluate was immediately adjusted to physiological pH by adding 50μl of 1M
Tris-base buffer, pH9.0 per 1 ml eluate.
The eluted CSRO2-Fab-TF from KappaSelect column was further
purified with a Capto Adhere column (5 ml) pre-equilibrated with 20mM Tris
buffer, pH 7.5. The CSR02-Fab-TF sample eluted from KappaSelect column was
diluted 50 fold with 20mM Tris buffer, pH 7.5 and followed by loading it onto a
Capto Adhere column at a flow rate 1 ml/min. After application of the sample, the
column was washed with equilibration buffer until OD280 dropped to baseline. The
bound CSRO2-Fab-TF protein was then eluted with 20mM Tris buffer, pH 7.5
containing 200mM NaCl.
Production of soluble recombinant human and mouse PLVAP proteins
(hPLVAP and mPLVAP)
Production of(hPLVAP). Plasmid pGEM -T Easy–hPLVAP was
51-442
generated by inserting a PCR fragment representing the truncated PLVAP (amino
acid residues 51 to 442 comprising the extracellular domain of mouse PLVAP) into
the pGEM -T Easy Vector (Promega). This PCR fragment was generated from a
cDNA clone of human PLVAP (NM_031310) (OriGene, Rockville, MD) by PCR
using the following primer pair:
’-CATATGAACGTGCACGTGAGCACAGAGTCC-3’ (SEQ ID NO: 45) and
’-GGATCCTGAGCATATCCCTGCATCCTCC-3’ (SEQ ID NO: 46).
For construction of plasmid pET-15b-hPLVAP to produce
51-442
recombinant PLVAP protein, a cDNA fragment encoding the amino acid residues 51
to 442 of PLVAP with NdeI/Bam HI recognition sequences (boxed sequences) at the
ends was excised from pGEM -T Easy –hPLVAP and inserted into pET-15b
51-442
(Novagen). The expression construct described above was verified by DNA
sequencing and transformed to Escherichia coli (Rosetta-gami2(DE3)pLysS) (EMD
Millipore Corp.).
A His-tagged hPLVAP fusion proteins was produced and purified as
described below. A colony (1-2mm) of transformed E. coli from fresh culture was
inoculated into 4 ml of TB medium containing 100 μg/ml ampicillin, 34 μg/ml
chloramphenical, 12.5μg/ml tetracycline at 37°C, 230 rpm overnight. The overnight
culture was inoculated into 400 ml of TB medium containing 100 μg/ml ampicillin
34 μg/ml chloramphenical, 12.5μg/ml tetracycline and continued to grow at 37 C,
250 rpm. When the absorbance at 600 nm reached about 0.6~0.8, isopropyl β-D
thiogalactopyranoside (IPTG) was added to a final concentration of 1.66 mM to
induce protein production. Shaking was continued at 30°C for about 20 h. Cells
were harvested by centrifugation at 10000 g for 30 minutes at 4°C. The cell pellet
was re-suspended in 12 ml equilibration-wash buffer (50 mM sodium phosphate,
300 mM NaCl, pH 7, 10 mM imidazol) supplemented with 8 M urea and stored at -
°C for at least 2 hours. The thawed sample was sonicated for 10 seconds, with a
second pause between each burst to reduce the viscosity until it becomes
translucent. The cell suspension was centrifuged at 10,000–12,000 x g for 20 min at
4°C to pellet any insoluble material. The supernatant from the previous step was
applied to TALON Resin column (Clontech) which has been equilibrated with 10
column volume of equilibration-wash buffer supplemented with 8 M urea. After
washing the column with 10–20 column volumes of 1X equilibration-wash Buffer,
recombinant polyhistidine-tagged human PLVAP protein was eluted with 5 column
volumes of elution buffer (50 mM sodium phosphate, 300 mM NaCl, pH 7, 500 mM
imidazol) contining 6 M urea. The purified recombinant protein in the eluate was
dialyzed against 1X equilibration/wash buffer containing 3M urea at 4°C for at least
4 hours, then buffer was changed to 1X equilibration-wash buffer containing 1M
urea, and dialyze at 4°C for at least 4 hours. Protein concentration was determined
with Bradford dye binding assay (Bio-Rad, Hercules, CA). The protein was then
digested with 1unit of biotinylated thrombin (Novagen) for each mg of the
recombinant PLVAP protein at 23°C for 16 hours to remove polyhistidine-tag.
Biotinylated thrombin was removed from the incubation by solid phase streptavidin-
agarose. The resulting recombinant water soluble human PLVAP (hPLVAP) was
dialyzed against 1X equilibration-wash buffer (50 mM sodium phosphate, 300 mM
NaCl, pH 7) without urea. The protein concentration was determined and the
protein was analyzed by SDS-PAGE for purity (.
Production of mPLVAP(mouse PLVAP). Plasmid pGEM-T Easy–
mPLVAP was generated by inserting a PCR fragment representing the truncated
48-438
PLVAP (amino acid residues 48 to 438 comprising the extracellular domain of
mouse PLVAP) into the pGEM -T Easy Vector (Promega Corp.). This PCR
fragment was prepared from a cDNA clone of mouse PLVAP (Invitrogen, Life
Technologies Corp.) by PCR using the following primer pair:
mPLVAP CDS NdeI F: 5’CATATGTATGGCAATGTGCACGCCACC3’ (SEQ
ID NO: 47) and
mPLVAP Stop Xho I R: 5’CTCGAGATCCACAGGTGGGCGATTCTGGC3’
(SEQ ID NO: 48).
Next, a cDNA fragment encoding the amino acid residues 48 to 437 of
PLVAP containing NdeI and XhoI recognition sequences at each end was excised
from pGEM -T Easy –mPLVAP and inserted into pET-15b (Novagen-EMD
48-438
Millipore, Darmstadt, Germany) for protein expression. After verification by DNA
sequencing, this expression construct was transformed into Escherichia coli
(Rosetta-gami2(DE3)pLysS). Expression of His-tagged fusion mPLVAP protein in
Escherichia coli Rosetta-gami2(DE3)pLysS was induced with 1 mM isopropyl-ß-D-
thiogalactopyranoside for 16 hours at 30°C. Following the induction, the bacterial
cells were subjected to lysis by sonication in equilibration buffer (50 mM sodium
phosphate, 300 mM NaCl, pH 7) supplemented with 8 M urea and separated into
soluble and insoluble fractions by centrifugation at 15,652 x g for 30 minutes at 4°C.
To purify the His-PLVAP protein, the soluble fraction was loaded onto a
48-438
TALON® Metal Affinity Resin (Clontech, Palo Alto, CA) and was eluted with
elution buffer (50 mM sodium phosphate, 300 mM NaCl, pH 7, 500 mM imidazole).
The resulting mouse PLVAP protein in the eluate was dialyzed against PBS.
48-438
SDS-PAGE analysis of the purified His-mPLVAP is shown in
Studies of CSRO2-Fab-TF and MECA32-Fab-TF Binding to respective human
and mouse PLVAP by ELISA
In order to make sure that the recombinant anti-PLVAP-Fab-TF proteins
can bind to human or mouse PLVAP protein, an ELISA assay was developed and
used. First, each well of an ELISA plate was coated with 50 µl of 2.5µg/ml human
or mouse recombinant PLVAP protein in PBS-azide (0.02%) overnight at 4°C.
Thereafter, the assays were carried out at room temperature. After three washes of
each well with 150µl washing buffer (PBS containing 0.2% Tween-20). Each well
was blocked with 150 µl blocking buffer (PBS containing 2% BSA and 0.05%
Tween-20) for 30 minutes. After three washes, 50 µl of anti-human PLVAP
CSRO2-Fab-TF or anti-mouse PLVAP MECA32-Fab-TF was added into each well
at different concentrations in duplicates. All wells were incubated for 45 minutes
and washed three times. Wash well was then incubated with 50µl biotinylated anti-
human TF antibody (R&D Systems Corp.) at 1:500 dilutions in the blocking buffer
for 45 minutes. After three washes, each well was incubated with 5000x diluted
Streptavidin-alkaline phosphatase conjugate for 30 minutes. Each well was then
incubated with 100µl alkaline phosphatase substrate for 60 minutes and absorbance
of each well was measured at 405nm in a microplate reader.
The assay was also modified into a competitive binding assay. For the
competitive binding assay, increasing concentrations of anti-PLVAP antibodies or
Fab-TF were incubated with an optimal amount of biotinylated anti-PLVAP
monoclonal antibody to compete for the binding to PLVAP. After incubation and
washing, biotinylated antibody bound to PLVAP was quantified with streptavidin-
alkaline phosphatase conjugate and chromogenic substrate.
Chromogenic assay for human tissue factor activity
The TF activities of recombinant CSRO2-Fab-TF, MECA32-Fab-TF and
MECA32 mAb crosslinked with human TF were measured using a chromogenic
assay. This assay is based on binding of TF to factor VIIa and the ability of
TF/FVIIa complex to activate factor X (FX). The TF activity was quantified
indirectly by the amount of FXa produced. The FXa produced was measured
kinetically according to the release of para-nitroamiline (pNA) from a FXa specific
chromogenic peptide substrate as an increase of absorbance at 405 nm. The TF
activity was determined against a commercial water soluble recombinant TF
standard (R&D systems Corp.). The chromogenic TF activity assay was based on
the procedure reported by Philipp et al.. See Philipp J, Dienst A, Unruh Maike, et
al. “Soluble tissue factor induces coagulation on tumor endothelial cells in vivo if
coadministered with low-dose lipopolysaccharides” Arterioscler Thromb Vasc
Biol.; 23:905-910 (2003)
Hep3B HCC xenograft model in SCID mice
Hep3B is a human HCC cell line. In order to demonstrate the therapeutic
effectiveness of anti-PLVAP Fab-TF, we establish a HEP3B xenograft model in
BALB/c C.B-17 SCID mice. Hep3B HCC xenograft was established by
subcutaneous injection of 4 million Hep3B cells into right upper inner thigh of a 5
weeks old male C.B-17 SCID mouse under general anesthesia with inhalation of
isoflurane. The cells were suspended in 60µl of ice cold 75% BD Mtrigel (BD
Bioscience Corp.) dissolved in Dulbecco's modified eagle medium (DMEM) (Life
Technologies Corp.) without serum. Injection was carried out by using a 29 gauge
insulin syringe.
Hep3 B cells used for injection were cultured in DMEM containing 10%
fetal bovine serum, 1% GLUTA-MAX, 1% antibiotics-antimycotics, and 1%
HEPES. All reagents were purchased from Life Technologies. The cells for
injection were harvested when they reached 80% confluency. The cells were lifted
from the culture flask using trypsin-EDTA solution from Life Technologies
according to the instruction of the manufacturer, and tumor cells were washed once
with DMEM before suspending in ice cold 75% BD Mtrigel for injection. After
injection, mice were followed regularly for growth of tumor xenograft. Normally, it
took five to six weeks for tumors to become ready for the study.
Infusion of anti-PLVAP Fab-TF into tumor feeding artery
For treatment of Hep3B tumor xenograft with anti-PLVAP MECA32-
Fab-TF, a mouse carrying Hep3B tumor xenograft was anesthetized with inhalation
of isoflurane using a MATRX anesthesia machine. The mouse was laid in supine
position under a dissecting microscope. The hair over the right inguinal area was
removed with Nair hair remover (Church & Dwight Co.) a day before infusion.
After cleansing the skin with 75% alcohol, a 0.5 cm incision was made at the right
inguinal area above tumor. The wound was deepened to expose right femoral artery
and vein. Right femoral artery was then looped with a 6-0 nylon thread. The artery
was gently retracted proximally. An arteriotomy was done with a micro-scissor
distal to the retraction and a fine 33 gauge needle was inserted into the distal side.
MECA32-Fab-TF or control antibody was infused slowly at a rate about 40 µl per
minute. Injection was performed under close observation to ensure that there was no
leakage. After infusion, the needle was withdrawn. The arteriotomy site was sealed
with Histoacryl (TissueSeal, AnnArbor, MI). The nylon for retraction was removed.
After confirmation of adequate hemostasis, the incision wound was closed with
continuous suture.
3D sonography and power Doppler for measurement of tumor volume and
blood flow
Vevo 2100 High-Resolution Imaging System (Visual Sonics, Inc.,
Toronto, Canada) was used to acquire 3D tumor image according to the instruction
of the manufacturer. Three perpendicular dimensions of the tumor were determined
by taking the following measurements. Two perpendicular dimensions on the
largest cross section area along tumor X and Y axes were measure first. The longest
dimension along Z axis perpendicular to X and Y dimensions were then determined
using the software provided by the vendor. Tumor volume was determined using
the following formula for elliptical object: Volume=π/6 x length x width x height.
Tumor blood flow images were captured using 3D power Doppler according to the
manual for a Vevo 2100 High-Resolution Imaging System.
Measurement of binding affinities of MECA32-Fab-TF and CSRO2-Fab-TF
The assay used to determine binding affinity between anti-PLVAP-Fab-
TF and target PLVAP was based on a chromogenic TF activity assay as described in
the earlier section. Briefly, each well of an ELISA plate was coated with 2.5µg/ml
water soluble recombinant human or mouse PLVAP overnight. After washings and
blocking as described for the ELISA to study CSRO2-Fab-TF and MECA32-Fab-TF
binding to PLVAP, wells coated with human or mouse PLVAP protein were
incubated with 50 µl of increasing concentrations of CSRO2-Fab-TF or MECA32-
Fab-TF at 0.3125, 0.625, 1.25, 2.5, 5 and 10 µg/ml in duplicates. After incubation
for 3 hours at room temperature, wells were washed and assayed for amounts of TF
activity bound in wells using a TF standard curve as described in the earlier section
for the chromogenic TF activity assay. The concentration of total CSRO2-Fab-TF
or MECA32-Fab-TF added in each well was known and the concentration of bound
CSRO2-Fab-TF or MECA32-Fab-TF in each well could be calculated from the
assay results. These numbers were then analyzed using Scatchard plot analysis to
determine the binding affinity of CSRO2-Fab-TF or MECA32-Fab-TF. See, e.g.,
Scatchard G. “The attractions of proteins for small molecules and ions” Ann NY
Acad Sci. 51:660-672(1949).
Immunohistochemical (IHC) staining of PLVAP in HEP3B tumor xenograft
using MECA32 anti-PLVAP monoclonal antibodies
To study expression of PLVAP in mouse Hep3B xenograft, sections of
formalin fixed paraffin tissue block were processed for immunohistochemical
staining by anti-PLVAP monoclonal antibodies. After de-paraffinization and
rehydration of tissue sections following routine procedures, slides with tissue
sections in a carrier were placed in a beaker and immersed in Target Retrieval
Solution (Dako, Inc. Carpinteria, CA). The beaker was placed in an autoclave and
heated at 121°C for 10 minutes. After cooling, the slides were transferred into
distilled water. The section on each slide was then treated with 200-400µl hydrogen
peroxide in Ventana iView DAB Detection kit (Ventana Medical Systems, Inc.) to
quench endogenous peroxidase. After rinsing slides with Tris-buffered saline (TBS)
(Dako), Sections were incubated with 5 µg MECA32 anti-PLVAP monoclonal
antibodies diluted in TBS containing 0.1%bovine serum albumin (TBS-BSA) with
at 37°C for 60 minutes. After washing by submerging slides in TBS buffers for 5
minutes three times, the sections were incubated with a biotinylated secondary
antibody (e.g., biotinylated sheep anti-rat IgG for MECA32 mAb) at a dilution
recommended by the vendor at room temperature for 15 minutes. The sections on
slides were washed similarly as described above. The sections on slides were
incubated with freshly prepared DAB substrate in the kit for 30 minutes. The slides
were rinsed with distilled water a few times. After counter stain with Gill's
hematoxylin solution for 15 seconds, the slides were rinsed with TBS followed with
distilled water. After air-drying sections, the sections were covered with Permount
medium and cover slips.
Results
PLVAP expression in HCC and HEP3B xenograft
Our earlier study showed that PLVAP is differentially expressed on
vascular endothelial cells of HCC and not in vascular endothelial cells of non-
tumorous liver tissue. The differential expression of PLVAP offered an opportunity
to target HCC for therapeutic purpose. We conceived a novel approach of using
anti-PLVAP monoclonal antibody or its Fab fragment serve as a carrier for a co-
expressed blood coagulation triggering tissue factor protein for treatment of HCC.
Infusion of such a therapeutic agent into tumor feeding artery was believed to result
in binding of this therapeutic antibody or its Fab fragment to vascular endothelial
cells of HCC, trigger blood clot formation in tumor blood vessels and lead to
ischemic necrosis of tumor.
To demonstrate the feasibility of this approach, we established a human
HCC xenogaft model in SCID mice using HEP3B HCC cell line. We then
determined whether vascular endothelial cells grew into HEP3B tumor xenograft
expressed mouse PLVAP by immuno-histochemical (IHC) staining using MECA32
anti-mouse PLVAP mAb. As shown in , vascular endothelial cells of
HEP3B tumor xenograft in SCID mice indeed expressed PLVAP like human HCC.
Therefore, HEP3B xenograft could be used for the study to demonstrate anti-tumor
effect of anti-PLVAP mAb or its Fab fragment conjugated with human tissue factor.
Effect of MECA32 mAb conjugated with soluble human TF on HEP3 B
xenograft
First, we treated SCID mice carrying HEP3B xenograft tumors with
MECA32 mAb chemically conjugated with recombinant water soluble human tissue
factor (MECA32-TF). Human TF was used, because human TF is effective to
trigger blood coagulation in both human and mice and cDNA of human TF was
commercially available. Each tumor-bearing mouse was treated by infusion of 24
µg MECA32-TF (treatment group) or 20 µg MECA32 mAb (control group) in 100
µl of phosphate buffered saline (PBS) into a tumor feeding right femoral artery
under dissecting microscope. The slightly less amount of MECA32 mAb (20µg)
was used to adjust for higher molecular weight of MECA32-TF. 3D power Doppler
was used to assess tumor blood flow 48 hours before and after treatment. The
results showed significant reduction of intra-tumor blood flow signals after
treatment with MECA32-TF in the treatment group and not in the control group
(. Follow up of tumor growth showed significant suppression of tumor
growth in the MECA32-TF treatment group and not in the control group (.
The results of this study support that anti-PLVAP monoclonal antibody conjugated
with human TF was effective for treatment of HCC xenografts.
Development and characterization of MECA32-Fab-TF
For chemical conjugation of TF to MECA32 mAb, it was difficult to
consistently and reproducibly control the numbers and the sites of TF protein
molecules cross-linked to MECA32 mAb. MECA32-TF prepared by chemical
cross-linking did not yield homogeneous product. The high molecular weight of
MECA32-TF conjugate (approximately 170 kDa) also leads to long circulation half-
life with increased chance of causing adverse side effects.
In order to have a structurally well defined homogeneous therapeutic
biologic with shorter half-life to limit off-target side effects, we developed a novel
recombinant protein that consisted of Fab portion of anti-PLVAP mAb and
extracellular domain of human tissue factor linked to the carboxyl end of the heavy
chain constant domain 1. We then produced an anti-murine PLVAP MECA32-Fab-
TF recombinant protein (MECA32-Fab-TF). A diagram depicting the structure of
this recombinant protein is shown in
Purified MECA32-Fab-TF was used to compete with biotinylated
MECA32 mAb for binding to mouse PLVAP. These results indicated that
MECA32-Fab-TF indeed retained its ability to bind to PLVAP (). Scatchard
analyses of six different batches of MECAFab-TF also showed high binding
affinity to mouse PLVAP with Kd of 5.7±1.4 x 10 M. The TF linked at the
carboxyl terminus of MECA32 Fd was also functional and could interact with factor
VIIa to activate factor X. The measured tissue factor specific activity was 90±22 µg
(n=6) in each milligram of MECA32-Fab-TF.
Effect of MECA32-Fab-TF on HEP3B tumor xenograft in SCID mice
To demonstrate the therapeutic efficacy of recombinant MECA32-Fab-
TF, we first conducted two dose response studies. For both studies, MECA32-Fab-
TF was infused into a tumor feeding femoral artery. Seventy-two hours after
treatment, the treated mice were sacrificed and tumors were harvested for
histological examination. For the first study, three different doses of MECA32-Fab-
TF (3µg, 6µg and 12 µg) were used to treat tumor-bearing mice and the control
group was treated with 12µg MECA32 monoclonal antibody without tissue factor.
There were three mice for each dose. For the second study, the doses of MECA32-
Fab-TF used were 2.5µg, 5µg and 10µg. There were two mice at each dose. The
results of these two studies were summarized and shown in FIGs. 11 and 12. The
results of these studies revealed that tumors from the mice treated with MECA32-
Fab-TF developed massive ischemic necrosis at all doses. However, the dose of
10µg or higher yielded more consistent results. No or minimal tumor necrosis was
noted in the control groups. The results of these studies demonstrated that anti-
PLVAP-Fab-TF was quite potent and could induce significant ischemic tumor
necrosis as low as 2.5µg per mouse within 72 hours.
Effect of anti-mPLVAP MECA32-Fab-TF on histology of HEP3B tumor
xenografts at different time points after infusion
The studies described above indicated that tumor developed frank
ischemic necrosis 72 hour after treatment. In order to learn how necrosis was
induced after treatment with anti-mPLVAP Fab coexpressing TF, we infused
MECA32-Fab-TF into tumor feeding artery and harvested HEP3B tumors at 2
hours, 4 hours, 24 hours, 48 hours and 72 hours after infusion after infusion of 10µg
MECA32-Fab-TF. There were two tumor-bearing mice at each time point. Two
mice without treatment were also sacrificed on the same day of this experiment as 0
hour base-line controls.
As shown in A, our results revealed that fibrin thrombi in tumor
blood vessels could be found at 2 hours after treatment. The number of blood
vessels containing fibrin thrombi became more evident at 4 hours and 24 hours after
treatment. Tumor cells began to separate from each other with increased clear space
at 4 hours and this change became more apparent at 24 hours (B). Frank
ischemic necrosis with loss of nuclear staining was noted at 48 hours after treatment
and became more pronounced at 72 hours (FIGs. 13A and 13B). No fibrin thrombi
were noted in tumor blood vessels before treatment (0 hour) (A). Power
Doppler study also revealed cessation of blood flow in major tumor blood vessels at
2 hours after infusion and lasted to 72 hours (). These findings support that
anti-PLVAP-Fab-TF indeed could bind to PLVAP of tumor vascular endothelial
cells, induced blood clot formation in tumor blood vessels, created blockage of
blood flow and caused tumor necrosis.
Effect of anti-PLVAP MECA32-Fab-TF on growth of HEP3B tumor xenografts
Next, we studied the therapeutic effect of anti-PLVAP Fab-TF treatment
on tumor growth. Two different studies were conducted. The first study was to
follow tumor growth for 25 days after treatment. The study was terminated 25 days
after treatment, because the large sizes of tumors in the control group necessitated
the stop of the study. Tumor sizes were followed using 3D-sonography. The results
summarized in FIGs., 15, 16A and 16B showed that single infusion of 5µg or 10µg
of MECA32-Fab-TF effectively suppressed the tumor growth but not by 10µg
control MECA32 antibody without TF.
For the second study, SCID mice bearing HEP3B tumor xenografts were
treated with intra-arterial infusion of 10µg MECA32-Fab-TF (n=4) or 10µg
MECA32 monoclonal antibody (n=2). Tumor growth was followed with 3D
sonography. When HEP3B tumors grew to approximately 2000 cubic millimeter,
tumor-bearing mice were euthanized. This study allowed us to assess the delay of
tumor growth in the treatment group. The results summarized in showed
that there was a significant delay of tumor growth after single infusion of 10 µg
MECA32-Fab-TF into the tumor-feeding artery. It took 42 more days for the tumor
in the treatment group to grow to 1600mm comparing to the control mice. The
average days for tumors to grow to 1600mm between the control and the treatment
groups were 9.8±3.0 days and 51.8±3.2 days, respectively ().
In summary, the results of these two different studies further supported
that infusion of anti-PLVAP-Fab-TF into tumor feeding artery was effective to
induce tumor necrosis and control tumor growth.
Effect of systemic administration of anti-PLVAP-Fab-TF on tumor growth
In order to know whether systemic administration of MECA32-Fab-TF
through a peripheral vein can also achieve the same therapeutic effect or not, we
injected 10 µg or 20µg of MECA32-Fab-TF into a tail vein of SCID mouse bearing
HEP3B tumor xenograft and monitored tumor growth after injection. Control mice
were injected with phosphate buffered saline. There were three mice in each
treatment group. The results summarized in showed that there was no
statistically significant effect on tumor volume when MECA32-Fab-TF was
administered through a tail vein. Therefore, infusion of anti-PLVAP MECA32-Fab-
TF into a tumor feeding artery was necessary to induce tumor necrosis and achieve
therapeutic effect. It is possible that systemic administration of MECA32-Fab-TF
resulted in dilution of the injected MECA32-Fab-TF and binding of MECA32-Fab-
TF to PLVAP on vascular endothelial cells of other organs (e.g., lungs, kidneys and
gastrointestinal organs) before reaching to tumor blood vessels.
Development and characterization of anti-human PLVAP Fab-TF
In order to know whether a similar therapeutic agent could be developed
against human PLVAP, a humanized anti-human PLVAP monoclonal antibody
against an antigenic epitope residing in the amino acid sequence of PPAGIPVAPSS
at the carboxyl terminus of human PLVAP was used. This humanized anti-human
PLVAP monoclonal antibody was developed previously and is described in U.S.
Patent Application Publication No. US20110262349 A1. This anti-human PLVAP-
Fab-TF conjugate was designated as CSRO2-Fab-TF (. We then conducted a
series of studies to compare CSRO2-Fab-TF with MECA32-Fab-TF in terms of
tissue factor specific activity and binding affinity to target PLVAP. The results of
our studies showed that anti-human PLVAP CSRO2-Fab-TF appeared to have
higher TF activity in each milligram of anti-PLVAP Fab-TF comparing to anti-
mouse PLVAP MECA32-Fab-TF and both CSRO2-Fab-TF and MECA32-Fab-TF
had similar binding affinities (Table 1). The findings indicated that CSRO2-Fab-TF
like MECA32-Fab-TF could bind to their PLVAP targets with sufficient affinity and
carried sufficient TF activity to initiate blood coagulation to achieve a therapeutic
effect.
Table 1. Comparison of tissue factor (TF) specific activity on each milligram of
anti-PLVAP Fab-TF and binding affinity to PLVAP between anti-human PLVAP
CSRO2-Fab-TF and anti-mouse PLVAP MECA32-Fab-TF.
As summarized in Table 1, three different batches of CSRO2-Fab-TF and
six different batches of MECA32-Fab-TF were studied. Results indicated that both
Fab-TF had similar binding affinities. Nevertheless, CSRO2-Fab-TF had higher
specific TF activity than MECA32-Fab-TF. The results indicate that CSRO2-Fab-
TF has sufficient binding affinity and tissue factor specific activity to achieve
therapeutic effect like MECA32-Fab-TF for treatment of hepatocellular carcinoma.
Based on the average tumor volume at the time of treatment and the
doses of MECA32-Fab-TF required to effectively induce tumor necrosis in our
Hep3B xenograft model, we estimated that the effective therapeutic dose for anti-
PLVAP-Fab-TF to treat HCC by infusion into tumor feeding artery is between 15µg
to 100µg for each milliliter (cubic centimeter) of tumor.
To further demonstrate that the developed CSRO2-Fab-TF can bind to
vascular endothelial cells of human HCC, we biotinylated CSRO2-Fab-TF and used
this Fab-TF to study its binding to vascular endothelial cells of human HCC. The
results of our studies showed that biotinylated CSRO2-Fab-TF indeed bound to
vascular endothelial cells of HCC and not to vascular endothelial cells of non-
tumorous liver tissue (). The results of this study supported that CSRO2-
Fab-TF like MECA32-Fab-TF could be used for treatment of HCC in patients
through infusion into tumor feeding artery(ies).
Based on the knowledge that PLVAP is differentially expressed in blood
vessels of HCC and not in those of non-tumorous liver tissues, we have developed a
novel therapeutic agent for treatment of HCC by co-expressing human tissue factor
protein on anti-PLVAP monoclonal antibody or its Fab fragment. We showed that
both whole antibody and its Fab fragment carrying soluble extracellular domain of
human tissue factor indeed could induce tumor necrosis and suppressed tumor
growth after single infusion into a tumor feeding artery.
Because chemical conjugation of soluble tissue factor to anti-PLVAP
antibody could not reproducibly control the same number of tissue factor cross-
linked to each antibody at the same sites, we therefore created a recombinant Fab
fragment of anti-PLVAP monoclonal antibody with carboxyl terminus of Fd chain
co-expressing extracellular domain of human tissue factor and used this recombinant
protein as a therapeutic agent for treatment of HCC. To demonstrate that such a
therapeutic agent indeed could be used for treatment of HCC, SCID mice bearing
tumor derived from HEP3B human hepatocellular carcinoma cell line were first
established and used for the proof-of-concept study. We then developed a mouse
version of anti-PLVAP-Fab-TF using MECA32 anti-mouse PLVAP hybridoma. It
was necessary to develop a mouse version of anti-PLVAP-Fab-TF, because blood
vessels growing into human HCC xenograft are derived from mice and express
mouse PLVAP. We expressed human tissue factor on both human and mouse
versions of anti-PLVAP Fab-TF, because human tissue factor can activate mouse
coagulation factor VII and induce blood coagulation in mice. Our comparative
study between CSRO2-Fab-TF and MECA32-Fab-TF confirmed that they both can
bind to their PLVAP targets with sufficient affinity and carry sufficient tissue factor
activity to trigger blood coagulation and achieve therapeutic effect.
The results of our studies demonstrated that the recombinant anti-
PLVAP-Fab-TF developed by us had therapeutic effect for treatment of HCC
through triggering blood clot formation in tumor blood vessels, blocking tumor flow
and inducing tumor necrosis following infusion of this novel therapeutic agent
directly into a tumor feeding artery, but not by systemic intravenous administration
through a peripheral vein. The studies described in this application also support that
anti-human PLVAP monoclonal antibody or its Fab fragment co-expressing tissue
factor protein could be used to treat tumors showing expression of PLVAP restricted
to tumor blood vessels, such as glioblastoma.
It should be understood that for all numerical bounds describing some
parameter in this application, such as “about,” “at least,” “less than,” and “more
than,” the description also necessarily encompasses any range bounded by the
recited values. Accordingly, for example, the description at least 1, 2, 3, 4, or 5 also
describes, inter alia, the ranges 1-2, 1-3, 1-4, 1-5, 2-3, 2-4, 2-5, 3-4, 3-5, and 4-5, et
cetera.
For all patents, applications, or other reference cited herein, such as non-
patent literature and reference sequence information, it should be understood that it
is incorporated by reference in its entirety for all purposes as well as for the
proposition that is recited. Where any conflict exits between a document
incorporated by reference and the present application, this application will control.
All information associated with reference gene sequences disclosed in this
application, such as GeneIDs or accession numbers (typically referencing NCBI
accession numbers), including, for example, genomic loci, genomic sequences,
functional annotations, allelic variants, and reference mRNA (including, e.g., exon
boundaries or response elements) and protein sequences (such as conserved domain
structures, Homologene entries, et cetera) as well as chemical references (e.g., Pub
Chem compound, Pub Chem substance, or Pub Chem Bioassay entries, including the
annotations therein, such as structures and assays, et cetera) are hereby incorporated
by reference in their entirety.
Headings used in this application are for convenience only and do not
affect the interpretation of this application.
Preferred features of each of the aspects provided by the invention are
applicable to all of the other aspects of the invention mutatis mutandis and, without
limitation, are exemplified by the dependent claims and also encompass
combinations and permutations of individual features (e.g., elements, including
numerical ranges and exemplary embodiments) of particular embodiments and
aspects of the invention including the working examples. For example, particular
experimental parameters exemplified in the working examples can be adapted for
use in the claimed invention piecemeal without departing from the invention. For
example, for materials that are disclosed, while specific reference of each various
individual and collective combinations and permutation of these compounds may
not be explicitly disclosed, each is specifically contemplated and described herein.
Thus, if a class of elements A, B, and C are disclosed as well as a class of elements
D, E, and F and an example of a combination of elements, A-D is disclosed, then
even if each is not individually recited, each is individually and collectively
contemplated. Thus, in this example, each of the combinations A-E, A-F, B-D, B-E,
B-F, C-D, C-E, and C-F are specifically contemplated and should be considered
disclosed from disclosure of A, B, and C; D, E, and F; and the example combination
A-D. Likewise, any subset or combination of these is also specifically contemplated
and disclosed. Thus, for example, the sub-group of A-E, B-F, and C-E are
specifically contemplated and should be considered disclosed from disclosure of A,
B, and C; D, E, and F; and the example combination A-D. This concept applies to
all aspects of this application including, elements of a composition of matter and
steps of method of making or using the compositions.
The forgoing aspects of the invention, as recognized by the person
having ordinary skill in the art following the teachings of the specification, can be
claimed in any combination or permutation to the extent that they are novel and non-
obvious over the prior art—thus to the extent an element is described in one or more
references known to the person having ordinary skill in the art, they may be
excluded from the claimed invention by, inter alia, a negative proviso or disclaimer
of the feature or combination of features.
While this invention has been particularly shown and described with
references to example embodiments thereof, it will be understood by those skilled in
the art that various changes in form and details may be made therein without
departing from the scope of the invention encompassed by the appended claims.
Claims (42)
1. A conjugate comprising a coagulating agent conjugated to an antibody, wherein the antibody specifically binds an extracellular domain epitope of a mammalian PLVAP.
2. The conjugate of Claim 1, wherein the coagulating agent is a coagulating protein.
3. The conjugate of Claim 2, wherein the coagulating protein is a tissue factor.
4. The conjugate of Claim 3, wherein the tissue factor comprises an amino acid sequence at least - 90, 95, 96, 97, 98, 99%, or more identical to SEQ ID NO:
5. A conjugate comprising a tissue factor with an amino acid sequence at least 90, 95, 96, 97, 98, 99%, or more identical to SEQ ID NO: 1 conjugated by a peptide bond to an antibody, wherein the antibody specifically binds an epitope in an extracellular domain of a human PLVAP protein.
6. The conjugate of any one of the preceding claims, wherein the mammalian PLVAP protein comprises an amino acid sequence at least 90, 95, 96, 97, 98, 99%, or more identical to SEQ ID NO: 2.
7. The conjugate of any one of the preceding claims, wherein the antibody specifically binds an epitope selected from PPAGIPVAPSSG or LAIRNSALDTCIKTKSQPMMPVSRPM.
8. The conjugate of Claim 7, wherein the antibody specifically binds the epitope PPAGIPVAPSSG.
9. The conjugate of any one of the preceding claims, wherein the coagulating protein and antibody are chemically cross-linked.
10. The conjugate of any one of the preceding claims, wherein the coagulating protein and antibody are linked by a peptide bond.
11. The conjugate of any one of the preceding claims, wherein the antibody is an immunoglobulin comprising a light chain variable region and a heavy chain variable region and wherein the coagulating agent is a coagulating protein.
12. The conjugate of Claim 11, wherein the coagulating protein and antibody, are linked by a peptide bond between the carboxy terminus of a protein comprising the heavy chain variable region and the amino terminus of the coagulating protein.
13. The conjugate of Claim 11, wherein the coagulating protein and antibody are linked by a peptide bond between the carboxy terminus of a protein comprising the light chain variable region and the amino terminus of the coagulating protein.
14. The conjugate of any one of the preceding claims, wherein the coagulating agent is a coagulating protein and the coagulating protein and antibody are linked by a peptide bond by a linker peptide.
15. The conjugate of Claim 14, wherein the linker peptide comprises (Gly -Ser) , wherein n is 1, 2, 3, 4, 5, or 6; more preferably wherein n is 3.
16. The conjugate of any one of the preceding claims, wherein the antibody is an immunoglobulin comprising: i) a heavy chain variable region comprising the CDRs of the variable region comprising the amino acid sequence of SEQ ID NO: 3 and a light chain variable region comprising the CDRs of the variable region comprising the amino acid sequence of SEQ ID NO: 4, optionally wherein the variable light chain and variable heavy chain have up to 1, 2, 3, or 4 conservative amino acid substitutions in each CDR; or ii) a heavy chain variable region comprising the CDRs of the variable region comprising the amino acid sequence of SEQ ID NO: 5 and a light chain variable region comprising the CDRs of the variable region comprising the amino acid sequence of SEQ ID NO: 6, optionally wherein the variable light chain and variable heavy chain have up to 1, 2, 3, or 4 conservative amino acid substitutions in each CDR.
17. The conjugate of Claim 16, wherein the light chain variable region and/or heavy chain variable region are humanized.
18. The conjugate of Claim 17, wherein the light chain variable region and heavy chain variable region are given by: i) a heavy chain variable region selected from SEQ ID NO: 7, 8, 9, 10, or 11, more particularly wherein the heavy chain variable region is SEQ ID NO: 11; and a light chain variable region selected from SEQ ID NO: 12, 13, or 14, more particularly wherein the light chain variable region is SEQ ID NO: 13; or ii) a heavy chain variable region selected from SEQ ID NO: 15, 16, 17, 18, or 19, more particularly wherein the heavy chain variable region is SEQ ID NO: 19; and a light chain variable region selected from SEQ ID NO: 20, 21, or 22, more particularly wherein the light chain variable region is SEQ ID NO: 22.
19. The conjugate of Claim 14, wherein the conjugate comprises an amino acid sequence at least 80, 85, 90, 95, 96, 97, 98, 99%, or more identical to SEQ ID NO: 23.
20. A pharmaceutical composition comprising the conjugate of any one of the preceding claims, wherein the composition further comprises a suitable carrier, excipient, and/or contrast medium.
21. The pharmaceutical composition of Claim 20 or the conjugate of any one of Claims 1-19, which is in a dosage form suitable for administration to a subject.
22. A nucleic acid encoding the conjugate of any one of Claims 1-8 or 10-19.
23. A vector comprising the nucleic acid of Claim 22.
24. An isolated host cell comprising the vector of Claim 23 or the nucleic acid of Claim 22.
25. The host cell of Claim 24, wherein the host cell is a bacterial cell, more particularly wherein the bacterial cell is Escherichia coli.
26. The host cell of Claim 24, wherein the cell is a eukaryotic cell selected from a fungus, such as yeast, including budding yeast; an insect cell, such as Sf9, Sf21, or high five cells; or mammalian cells, such as CHO, VERO, or COS cells.
27. A method of making the conjugate of any one of Claims 1-8 or 10-19, comprising culturing the host cell of any one of Claims 24-26 under conditions that support the expression of the conjugate by the host and isolating the expressed conjugate.
28. Use of the conjugate of any one of Claims 1-19 in the preparation of a medicament for treating a tumor with PLVAP-positive vasculature, reducing volume of a tumor with PLVAP-positive vasculature, or inducing thrombosis and tumor necrosis of a tumor with PLVAP-positive vasculature, in a mammalian subject in need thereof.
29. The use of Claim 28, wherein the tumor is an HCC and HCC tumor volume is reduced by thrombosis and tumor necrosis after administration of the conjugate.
30. The use of Claim 28 or Claim 29, wherein the subject is a human.
31. The use of any one of Claims 28-30, wherein the medicament is for intravascular administration to the tumor of the subject.
32. The use of any one of Claims 28-31, wherein the medicament is for infusion directly into one or more tumor-feeding arteries.
33. Use of the conjugate of any one of Claims 1-19 in the preparation of a medicament for the treatment of HCC in a human subject in need thereof, wherein the medicament is for infusion directly into one or more tumor- feeding arteries.
34. The use of any one of Claims 28-33, wherein the subject is undergoing concurrent or sequential treatment with one or more chemotherapeutic agents, radio-therapy, intratumoral alcohol injection, surgery, cryotherapy, radio frequency ablation, or a combination of one or more of the foregoing.
35. The use of Claim 34, wherein the medicament is for administration to the subject together with one or more chemotherapeutic agents.
36. The use of Claim 35, wherein the one or more chemotherapeutic agents comprises a therapeutically effective amount of sorafenib, bevacizumAb, or other antiangeogenic therapeutic drugs.
37. The use of Claim 35, wherein the medicament is for administration to the subject in a pharmaceutical composition further comprising the one or more chemotherapeutic agents.
38. The use of any one of Claims 28-37, wherein the tumor with PLVAP- positive vasculature is a glioblastoma.
39. The use of any one of Claims 28-38, wherein the medicament is for administration at a dose of conjugate of about 5 to about 200 µg/cm of tumor, more particularly about 10 to about 150 µg/cm of tumor, and more particularly about 15 to about 100 µg/cm of tumor.
40. The use of any one of Claims 28-39, wherein the medicament is for administration in a single dose.
41. The use of any one of Claims 28-39, wherein the medicament is for administration in 2, 3, 4, 5, 6, 7, 8, 9, 10 doses, or more.
42. The use of Claim 41, wherein the medicament is for administration over a period of 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 days; or 1, 2, 3, 4, 5, or 6 weeks; or 1, 2, 3, 4, 5, or 6 months, or more. Docket No.: 4261.1003-001 Title: Therapeutic Biologic for Inventors: Kuo-Jang Kao, et al. A B A B mglamehggs yaraggssrg cwyylryffl fvsliqflii lglvlfmvyg nvhvstesnl qaterraegl ysqllgltas qsnltkelnf ttrakdaimq mwlnarrdld rinasfrqcq gdrviytnnq rymaaiilse kqcrdqfkdm nkscdallfm lnqkvktlev eiakektict kdkesvllnk rvaeeqlvec vktrelqhqe rqlakeqlqk vqalclpldk dkfemdlrnl wrdsiiprsl dnlgynlyhp lgselasirr acdhmpslms skveelarsl radiervare nsdlqrqkle aqqglrasqe akqkvekeaq areaklqaec srqtqlalee kavlrkerdn lakeleekkr eaeqlrmela irnsaldtci ktksqpmmpv srpmgpvpnp qpidpaslee fkrkilesqr ppagipvaps sg (SEQ ID NO: 2) EVQLQQSGAEFVRSGASVKLSCTASGFNIKDYYIHWVKQRPEQGLEWIGWIDPENGDIEYAPKFQGK ATMTADTSSNTAYLQFSSLTSEDTAVYYCLYQEGSWGQGTTLTVSSA (SEQ ID NO: 3) DVVMTQTPLTLSVTIGQPASISCKSSQSLLNSDGKTYLNWLLQRPGQSPKRLIYLVSKLDSGVPD RFTGSGSGTDFTLKISRVEAEDLGVYYCWQGTHFPFTFGGGTKLEIK (SEQ ID NO: 4) QVQLQQPGAELVRPGASVKLSCKASGYTFTSNYINWVKQRPGQGLEWIGNIYPSDGFTNYNQKFKDR ATLTVDKSSSTAYMQLSSPTSEDSAVYYCTRNFDVWGAGTTVTVSSA (SEQ ID NO: 5) DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLQWYLQKPGQSPKLLIYTVSNRFSGVPDRF SGSGSGPDFTLKISRVEAEDLGVYFCSQSTHVPFTFGSGTKLEIK (SEQ ID NO: 6) MQVQLVQSGS ELKKPGASVK VSCKASGYTF TSNYINWVRQ APGQGLEWMG NIYPSDGFTN YNQKFKDRVT ITVDKSTSTA YMELSSLRSE DTAVYYCTRN FDVWGQGTTV TVSSASTKGP SVFPLAPCSR STSESTAALG CLVKDYFPEP VTVSWNSGAL TSGVHTFPAV LQSSGLYSLS SVVTVPSSSL GTKTYTCNVD HKPSNTKVDK RVESKYGPPC PSCPg gggsg gggsggggsS GTTNTVAAYN LTWKSTNFKT ILEWEPKPVN QVYTVQISTK SGDWKSKCFY TTDTECDLTD EIVKDVKQTY LARVFSYPAG NVESTGSAGE PLYENSPEFT PYLETNLGQP TIQSFEQVGT KVNVTVEDER TLVRRNNTFL SLRDVFGKDL IYTLYYWKSS SSGKKTAKTN TNEFLIDVDK GENYCFSVQA VIPSRTVNRK STDSPVECMG QEKGEFRE (SEQ ID NO: 23) 19688533_1.txt
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Application Number | Priority Date | Filing Date | Title |
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US201361904951P | 2013-11-15 | 2013-11-15 | |
US61/904951 | 2013-11-15 |
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NZ701995A NZ701995A (en) | 2020-05-29 |
NZ701995B true NZ701995B (en) | 2020-09-01 |
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