NZ625725B2 - Methods and compositions for diagnosis and prognosis of renal injury and renal failure - Google Patents
Methods and compositions for diagnosis and prognosis of renal injury and renal failure Download PDFInfo
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Classifications
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2800/00—Detection or diagnosis of diseases
- G01N2800/34—Genitourinary disorders
- G01N2800/347—Renal failures; Glomerular diseases; Tubulointerstitial diseases, e.g. nephritic syndrome, glomerulonephritis; Renovascular diseases, e.g. renal artery occlusion, nephropathy
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2800/00—Detection or diagnosis of diseases
- G01N2800/56—Staging of a disease; Further complications associated with the disease
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2800/00—Detection or diagnosis of diseases
- G01N2800/60—Complex ways of combining multiple protein biomarkers for diagnosis
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6893—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids related to diseases not provided for elsewhere
Abstract
method for evaluating renal status in a subject, comprises performing one or more assays configured to detect Growth/differentiation factor 15 (GDF-15) in a body fluid sample obtained from the subject to provide an assay result; and correlating the assay result(s) to the renal status of the subject. The correlation step comprises correlating the assay result(s) to one or more of diagnosis, risk stratification, prognosis, classifying and monitoring of the renal status of the subject. t. The correlation step comprises correlating the assay result(s) to one or more of diagnosis, risk stratification, prognosis, classifying and monitoring of the renal status of the subject.
Description
METHODS AND COMPOSITIONS FOR DIAGNOSIS AND PROGNOSIS OF
RENAL INJURY AND RENAL FAILURE
The present application claims ty to US. Provisional Application Nos.
61/562,778 filed November 22, 2011, 61/562,802 filed November 22, 2011, 61/562,813
filed November 22, 2011, 61/562,817 filed November 22, 2011, 61/562,824 filed
November 22, 2011, 61/562,829 filed er 22, 2011, 61/562,872 filed November
22, 2011, 61/562,879 filed November 22, 2011, ,883 filed November 22, 2011,
61/562,885 filed November 22, 2011, 61/562,916 filed November 22, 2011, 61/562,943
filed November 22, 2011, 61/562,947 filed November 22, 2011, and 61/562,951 filed
November 22, 2011, each of which is hereby orated in its entirety including all
, figures, and claims.
OUND OF THE INVENTION
The following discussion of the background of the invention is merely
provided to aid the reader in understanding the invention and is not ed to describe
or constitute prior art to the present invention.
The kidney is responsible for water and solute excretion from the body. Its
functions include maintenance of ase balance, regulation of electrolyte
concentrations, control of blood volume, and regulation of blood pressure. As such, loss
of kidney function h injury and/or e results in substantial morbidity and
mortality. A detailed discussion of renal injuries is provided in Harrison’s Principles of
Internal Medicine, 17Lh Ed., McGraw Hill, New York, pages 1741-1830, which are hereby
incorporated by reference in their entirety. Renal disease and/or injury may be acute or
chronic. Acute and chronic kidney disease are described as follows (from Current
Medical Diagnosis & Treatment 2008, 47Lh Ed, McGraw Hill, New York, pages 785-815,
which are hereby incorporated by reference in their entirety): “Acute renal failure is
worsening of renal function over hours to days, resulting in the retention of nitrogenous
wastes (such as urea en) and creatinine in the blood. Retention of these substances
is called ia. Chronic renal failure (chronic kidney disease) results from an
abnormal loss of renal function over months to years”.
Acute renal failure (ARF, also known as acute kidney injury, or AKI) is an
abrupt ally detected within about 48 hours to 1 week)reduction in glomerular
2012/066152
tion. This loss of filtration capacity s in retention of nitrogenous (urea and
nine) and non-nitrogenous waste products that are normally excreted by the kidney,
a reduction in urine output, or both. It is reported that ARF complicates about 5% of
hospital admissions, 4-15% of cardiopulmonary bypass surgeries, and up to 30% of
intensive care admissions. ARF may be categorized as prerenal, intrinsic renal, or
postrenal in causation. Intrinsic renal disease can be further divided into glomerular,
tubular, interstitial, and vascular abnormalities. Maj or causes of ARF are described in the
following table, which is adapted from the Merck Manual, 17Lh ed., Chapter 222, and
which is hereby incorporated by reference in their entirety:
Type Risk Factors
Prerenal
ECF volume depletion Excessive diuresis, hemorrhage, GI losses, loss of
intravascular fluid into the extravascular space (due to
s, peritonitis, pancreatitis, or burns), loss of skin
and mucus membranes, renal salt- and water-wasting
states
Low cardiac output Cardiomyopathy, MI, cardiac tamponade, pulmonary
embolism, pulmonary hypertension, positive-pressure
mechanical ventilation
Low systemic vascular Septic shock, liver failure, antihypertensive drugs
resistance
Increased renal vascular NSAIDs, cyclosporines, tacrolimus, hypercalcemia,
resistance anaphylaxis, etics, renal artery obstruction, renal
vein thrombosis, sepsis, hepatorenal syndrome
Decreased efferent ACE inhibitors or angiotensin II or blockers
arteriolar tone (leading to
decreased GFR from
d glomerular
transcapillary pressure,
especially in patients with
bilateral renal artery
stenosis)
Acute tubular injury Ischemia nged or severe prerenal state): surgery,
hage, arterial or venous ction; Toxins:
NSAIDs, cyclosporines, imus, lycosides,
foscarnet, ethylene glycol, hemoglobin, myoglobin,
ifosfamide, heavy metals, methotrexate, radiopaque
contrast agents, streptozotocin
Acute glomerulonephritis ANCA-associated: Crescentic glomerulonephritis,
polyarteritis nodosa, Wegener's granulomatosis; Anti-
GBM glomerulonephritis: Goodpasture's syndrome;
Immune-complex: Lupus glomerulonephritis,
postinfectious glomerulonephritis, cryoglobulinemic
glomerulonephritis
Type Risk Factors
Acute tubulointerstitial Drug reaction (eg, ams, NSAIDs, sulfonamides,
nephritis ciprofloxacin, thiazide diuretics, furosemide, phenytoin,
allopurinol, pyelonephritis, papillary necrosis
Acute vascular Vasculitis, malignant hypertension, thrombotic
nephropathy microangiopathies, scleroderma, atheroembolism
Infiltrative diseases Lymphoma, sarcoidosis, leukemia
Postrenal
r precipitation Uric acid (tumor lysis), sulfonamides, triamterene,
acyclovir, vir, methotrexate, ethylene glycol
ingestion, myeloma n, myoglobin
Ureteral obstruction Intrinsic: Calculi, clots, sloughed renal tissue, fungus
ball, edema, malignancy, congenital defects; Extrinsic:
Malignancy, retroperitoneal fibrosis, al trauma
during surgery or high impact injury
Bladder obstruction Mechanical: Benign prostatic hyperplasia, prostate
cancer, bladder cancer, urethral strictures, phimosis,
imosis, al valves, obstructed indwelling
urinary catheter; Neurogenic: Anticholinergic drugs,
upper or lower motor neuron lesion
In the case of ischemic ARF, the course of the disease may be d into
four phases. During an initiation phase, which lasts hours to days, reduced perfusion of
the kidney is evolving into injury. Glomerular iltration reduces, the flow of te is
reduced due to debris within the tubules, and back leakage of filtrate through injured
epithelium occurs. Renal injury can be mediated during this phase by reperfusion of the
kidney. Initiation is followed by an extension phase which is characterized by continued
ischemic injury and inflammation and may involve endothelial damage and ar
congestion. During the maintenance phase, lasting from 1 to 2 weeks, renal cell injury
occurs, and glomerular filtration and urine output reaches a minimum. A recovery phase
can follow in which the renal epithelium is repaired and GFR gradually recovers. Despite
this, the survival rate of subjects with ARF may be as low as about 60%.
Acute kidney injury caused by radiocontrast agents (also called contrast
media) and other nephrotoxins such as cyclosporine, antibiotics ing
aminoglycosides and anticancer drugs such as cisplatin manifests over a period of days to
about a week. Contrast induced nephropathy (CIN, which is AKI caused by radiocontrast
agents) is t to be caused by intrarenal vasoconstriction (leading to ic injury)
and from the generation of reactive oxygen species that are ly toxic to renal tubular
epithelial cells. CIN classically presents as an acute (onset within 24-48h) but reversible
(peak 3-5 days, resolution within 1 week) rise in blood urea nitrogen and serum
nine.
A commonly reported criteria for defining and detecting AKI is an abrupt
(typically within about 2-7 days or within a period of alization) elevation of serum
creatinine. gh the use of serum creatinine elevation to define and detect AKI is
well established, the magnitude of the serum nine elevation and the time over which
it is measured to define AKI varies considerably among ations. Traditionally,
relatively large increases in serum creatinine such as 100%, 200%, an increase of at least
100% to a value over 2 mg/dL and other definitions were used to define AKI. However,
the recent trend has been towards using smaller serum creatinine rises to define AKI. The
relationship between serum creatinine rise, AKI and the associated health risks are
reviewed in Praught and Shlipak, Curr Opin Nephrol Hypertens 14:265-270, 2005 and
Chertow et al, JAm Soc Nephrol 16: 3365-3370, 2005, which, with the references listed
therein, are hereby incorporated by reference in their entirety. As described in these
publications, acute worsening renal function (AKI) and increased risk of death and other
ental outcomes are now known to be associated with very small increases in serum
creatinine. These ses may be determined as a relative (percent) value or a nominal
value. Relative increases in serum creatinine as small as 20% from the pre-injury value
have been reported to indicate acutely worsening renal function (AKI) and increased
health risk, but the more commonly reported value to define AKI and increased health
risk is a relative se of at least 25%. Nominal increases as small as 0.3 mg/dL, 0.2
mg/dL or even 0.1 mg/dL have been reported to te worsening renal function and
sed risk of death. Various time periods for the serum creatinine to rise to these
threshold values have been used to define AKI, for example, ranging from 2 days, 3 days,
7 days, or a le period defined as the time the patient is in the hospital or intensive
care unit. These studies indicate there is not a particular threshold serum creatinine rise
(or time period for the rise) for worsening renal function or AKI, but rather a uous
increase in risk with increasing magnitude of serum creatinine rise.
One study (Lassnigg et all, J Am Soc Nephrol 15:1597-1605, 2004, hereby
incorporated by nce in its entirety) investigated both increases and decreases in
serum creatinine. Patients with a mild fall in serum creatinine of -0.1 to -0.3 mg/dL
following heart surgery had the lowest mortality rate. Patients with a larger fall in serum
creatinine (more than or equal to -0.4 mg/dL) or any increase in serum creatinine had a
larger mortality rate. These findings caused the authors to conclude that even very subtle
changes in renal function (as detected by small nine changes within 48 hours of
surgery) seriously effect patient’s outcomes. In an effort to reach sus on a unified
classification system for using serum creatinine to define AKI in clinical trials and in
clinical practice, o et al., Crit Care. 8(4):R204-l2, 2004, which is hereby
incorporated by reference in its entirety, proposes the following classifications for
stratifying AKI patients:
“Risk”: serum creatinine increased 1.5 fold from baseline OR urine production of <05
ml/kg body /hr for 6 hours;
“Injury”: serum creatinine increased 2.0 fold from baseline OR urine production <0.5
ml/kg/hr for 12 h;
“Failure”: serum creatinine sed 3.0 fold from baseline OR nine >355 umol/l
(with a rise of >44) or urine output below 0.3 ml/kg/hr for 24 h or anuria for at least 12
hours;
And included two clinical outcomes:
“Loss”: persistent need for renal replacement therapy for more than four weeks.
“ESRD”: end stage renal disease—the need for dialysis for more than 3 .
These criteria are called the RIFLE criteria, which provide a useful clinical
tool to classify renal status. As discussed in Kellum, Crit. Care Med. 36: 8141-45, 2008
and Ricci et al., Kidney Int. 73, 538-546, 2008, each hereby incorporated by reference in
its entirety, the RIFLE criteria provide a uniform definition of AKI which has been
validated in numerous studies.
More ly, Mehta et al., Crit. Care ll:R3l (doi:10.1186.cc57l3), 2007, hereby
incorporated by reference in its entirety, proposes the following r classifications for
stratifying AKI patients, which have been modified from RIFLE:
“Stage I”: increase in serum creatinine of more than or equal to 0.3 mg/dL (2 26.4
umol/L) or increase to more than or equal to 150% (1.5-fold) from ne OR urine
output less than 0.5 mL/kg per hour for more than 6 hours;
“Stage II”: increase in serum creatinine to more than 200% (> 2-fold) from baseline OR
urine output less than 0.5 mL/kg per hour for more than 12 hours;
“Stage 111”: increase in serum creatinine to more than 300% (> 3-fold) from baseline OR
serum creatinine 2 354 umol/L accompanied by an acute se of at least 44 umol/L
OR urine output less than 0.3 mL/kg per hour for 24 hours or anuria for 12 hours.
The CIN Consensus Working Panel (McCollough et al, Rev Cardiovasc Med.
2006; 7(4)3] 77-197, hereby incorporated by reference in its entirety) uses a serum
creatinine rise of 25% to define Contrast induced nephropathy (which is a type of
AKI).Although various groups propose slightly different criteria for using serum
creatinine to detect AKI, the consensus is that small changes in serum creatinine, such as
0.3 mg/dL or 25%, are sufficient to detect AKI (worsening renal function) and that the
magnitude of the serum creatinine change is an indicator of the severity of the AKI and
mortality risk.
Although serial measurement of serum creatinine over a period of days is an
accepted method of detecting and diagnosing AKI and is considered one of the most
important tools to evaluate AKI patients, serum creatinine is generally ed to have
several limitations in the sis, ment and monitoring of AKI patients. The time
period for serum creatinine to rise to values (e. g., a 0.3 mg/dL or 25% rise) considered
diagnostic for AKI can be 48 hours or longer depending on the tion used. Since
cellular injury in AKI can occur over a period of hours, serum creatinine elevations
detected at 48 hours or longer can be a late indicator of , and relying on serum
nine can thus delay diagnosis of AKI. Furthermore, serum creatinine is not a good
indicator of the exact kidney status and treatment needs during the most acute phases of
AKI when kidney function is ng rapidly. Some patients with AKI will recover
fully, some will need dialysis (either short term or long term) and some will have other
detrimental outcomes including death, major adverse cardiac events and chronic kidney
disease. Because serum creatinine is a marker of filtration rate, it does not differentiate
between the causes of AKI (pre-renal, intrinsic renal, post-renal ction,
embolic, etc) or the category or location of injury in intrinsic renal disease (for
example, tubular, glomerular or interstitial in origin). Urine output is similarly limited,
Knowing these things can be of vital importance in managing and treating patients with
AKI.
These limitations underscore the need for better methods to detect and assess
AKI, ularly in the early and subclinical stages, but also in later stages when
recovery and repair of the kidney can occur. Furthermore, there is a need to better
identify patients who are at risk of having an AKI.
BRIEF SUMMARY OF THE INVENTION
Provided herein are methods and compositions for evaluating renal function
in a subject. As described herein, measurement of one or more biomarkers selected
from the group consisting of Stanniocalcin-1, Antithrombin-III, Toll-like receptor 2,
Triiodothyronine (T3), Thyroxine (T4), Extracellular matrix protein 1, Coagulation
factor XIII A chain, Coagulation factor XIII B chain, Interleukin-17F, Interleukin-22,
Vitronectin, Progesterone, Estradiol, Growth/differentiation factor 15, and tein
convertase subtilisin/kexin type 9 (each referred to herein as a y injury marker”)
can be used for diagnosis, prognosis, risk stratification, staging, monitoring,
categorizing and determination of further diagnosis and treatment regimens in ts
ing or at risk of suffering from an injury to renal function, reduced renal function,
and/or acute renal e (also called acute kidney injury).
The kidney injury s of the present invention may be used,
individually or in panels comprising a plurality of kidney injury markers, for risk
stratification (that is, to identify subjects at risk for a future injury to renal function, for
future ssion to reduced renal on, for future progression to ARF, for future
ement in renal function, etc.); for diagnosis of existing disease (that is, to
identify subjects who have suffered an injury to renal function, who have progressed to
reduced renal function, who have progressed to ARF, etc.); for monitoring for
deterioration or improvement of renal function; and for predicting a future medical
outcome, such as improved or worsening renal function, a decreased or increased
mortality risk, a decreased or increased risk that a subject will require renal
replacement therapy (i.e., hemodialysis, peritoneal dialysis, hemofiltration, and/or renal
transplantation, a sed or increased risk that a subject will recover from an injury
to renal on, a decreased or increased risk that a subject will recover from ARF, a
decreased or increased risk that a subject will progress to end stage renal disease, a
decreased or sed risk that a subject will progress to chronic renal failure, a
decreased or increased risk that a subject will suffer rejection of a transplanted kidney,
etc.
In a first aspect, the present invention relates to methods for evaluating renal
status in a subject. These methods comprise performing an assay method that is
configured to detect one or more biomarkers selected from the group ting of
Stanniocalcin-1, rombin-III, Toll-like receptor 2, Triiodothyronine (T3),
Thyroxine (T4), Extracellular matrix protein 1, Coagulation factor XIII A chain,
Coagulation factor XIII B chain, Interleukin-17F, Interleukin-22, Vitronectin,
Progesterone, Estradiol, Growth/differentiation factor 15, and Proprotein convertase
subtilisin/kexin type 9 is/are then correlated to the renal status of the subject. This
correlation to renal status may include ating the assay result(s) to one or more of
risk stratification, diagnosis, prognosis, staging, classifying and monitoring of the
subject as described herein. Thus, the present invention utilizes one or more kidney
injury markers of the present invention for the evaluation of renal injury.
[0015A] In a related aspect provided herein is a method for evaluating renal status in
a subject, sing: performing one or more assays ured to detect
Growth/differentiation factor 15 in a body fluid sample obtained from the subject to
provide an assay result; and correlating the assay result(s) to the renal status of the
subject, wherein said correlation step comprises correlating the assay (s) to one or
more of diagnosis, risk stratification, prognosis, fying and monitoring of the renal
status of the subject.
[0015B] In a further aspect provided herein is a method for evaluating biomarker
levels in a body fluid sample, comprising: ing a urine sample from a subject
selected for evaluation based on a determination that the t is at risk of a future or
current acute renal injury; and performing a plurality of analyte g assays
configured to detect a ity of kers comprising Growth/differentiation factor
by introducing the urine sample obtained from the subject into an assay ment
which (i) contacts a plurality of ts which specifically bind for detection the
plurality of biomarkers with the urine sample, and (ii) generates one or more assay
results indicative of binding of each biomarker which is assayed to a respective specific
binding reagent in the plurality of reagents, wherein the subject is selected for
evaluation based on a determination that the subject is in need of diagnosis, risk
stratification, staging, prognosis, classifying or monitoring of the renal status of the
subject.
[0015C] In a further aspect provided herein is a kit, comprising: reagents for
performing one or more assays configured to detect one or more kidney injury markers
comprising at least Growth/differentiation factor 15 when used according to a method
of the invention.
[0015D] In another aspect provided herein is a a plurality of reagents which
specifically bind for detection a plurality of biomarkers comprising
Growth/differentiation factor 15; and an assay instrument configured to receive a urine
sample and contact the ity of reagents with the urine sample and to generate one
or more assay results indicative of binding of each biomarker which is assayed to a
respective specific binding reagent in the plurality of reagents when used according to a
method of the invention.
In certain embodiments, the methods for evaluating renal status described
herein are methods for risk stratification of the t; that is, assigning a likelihood of
one or more future s in renal status to the subject. In these embodiments, the
assay result(s) is/are correlated to one or more such future changes. The following are
preferred risk stratification embodiments.
In preferred risk stratification embodiments, these methods se
determining a subject’s risk for a future injury to renal function, and the assay result(s)
is/are correlated to a likelihood of such a future injury to renal function. For example,
the measured concentration(s) may each be compared to a threshold value. For a
“positive going” kidney injury marker, an increased likelihood of suffering a future
injury to renal on is assigned to the subject when the measured concentration is
above the threshold, ve to a likelihood assigned when the ed concentration
is below the threshold. For a ive going” kidney injury marker, an increased
likelihood of suffering a future injury to renal function is assigned to the subject when
the measured concentration is below the threshold, relative to a likelihood assigned
when the ed concentration is above the threshold.
In other preferred risk fication embodiments, these methods comprise
determining a t’s risk for future reduced renal function, and the assay result(s)
is/are correlated to a likelihood of such reduced renal function. For example, the
measured concentrations may each be compared to a threshold value. For a ive
going” kidney injury marker, an increased likelihood of suffering a future reduced renal
function is assigned to the subject when the measured concentration is above the
threshold, relative to a likelihood assigned when the measured concentration is below
threshold. For a “negative going” kidney injury marker, an increased likelihood of future
reduced renal function is assigned to the subject when the measured concentration is
below the threshold, relative to a likelihood assigned when the measured concentration is
above the threshold.
In still other preferred risk stratification embodiments, these s comprise
determining a subject’s likelihood for a future ement in renal function, and the
assay result(s) is/are correlated to a likelihood of such a future improvement in renal
function. For e, the ed concentration(s) may each be compared to a
threshold value. For a “positive going” kidney injury , an sed likelihood of a
future improvement in renal function is assigned to the subject when the measured
concentration is below the threshold, relative to a likelihood assigned when the measured
concentration is above the threshold. For a “negative going” kidney injury marker, an
increased likelihood of a future improvement in renal function is assigned to the subject
when the measured concentration is above the old, relative to a likelihood assigned
when the measured concentration is below the threshold.
In yet other preferred risk stratification embodiments, these methods comprise
determining a subject’s risk for progression to ARF, and the result(s) is/are correlated to a
likelihood of such ssion to ARF. For e, the measured tration(s) may
each be compared to a threshold value. For a “positive going” kidney injury , an
increased likelihood of progression to ARF is assigned to the subject when the ed
concentration is above the threshold, ve to a likelihood assigned when the measured
concentration is below the threshold. For a “negative going” kidney injury marker, an
increased likelihood of progression to ARF is assigned to the subject when the measured
concentration is below the threshold, relative to a likelihood assigned when the measured
concentration is above the threshold.
And in other preferred risk stratification embodiments, these methods
comprise determining a subject’s outcome risk, and the assay result(s) is/are correlated to
a likelihood of the occurrence of a clinical outcome related to a renal injury suffered by
the subject. For example, the measured concentration(s) may each be ed to a
threshold value. For a “positive going” kidney injury marker, an increased likelihood of
one or more of: acute kidney injury, progression to a worsening stage of AKI, mortality, a
requirement for renal replacement y, a ement for withdrawal of renal toxins,
end stage renal disease, heart failure, stroke, myocardial infarction, progression to chronic
kidney disease, etc., is assigned to the subject when the measured concentration is above
the old, ve to a likelihood assigned when the measured concentration is below
the threshold. For a “negative going” kidney injury marker, an increased likelihood of one
or more of: acute kidney injury, progression to a worsening stage of AKI, mortality, a
requirement for renal replacement therapy, a requirement for withdrawal of renal toxins,
end stage renal disease, heart failure, stroke, dial infarction, progression to chronic
kidney disease, etc., is assigned to the t when the measured concentration is below
the threshold, relative to a likelihood assigned when the measured concentration is above
the threshold.
In such risk stratification embodiments, preferably the likelihood or risk
assigned is that an event of interest is more or less likely to occur within 180 days of the
time at which the body fluid sample is obtained from the subject. In particularly preferred
embodiments, the likelihood or risk assigned relates to an event of interest occurring
within a shorter time period such as 18 months, 120 days, 90 days, 60 days, 45 days, 30
days, 21 days, 14 days, 7 days, 5 days, 96 hours, 72 hours, 48 hours, 36 hours, 24 hours,
12 hours, or less. A risk at 0 hours of the time at which the body fluid sample is obtained
from the subject is equivalent to diagnosis of a current condition.
In preferred risk stratification embodiments, the subject is selected for risk
stratification based on the pre-existence in the subject of one or more known risk factors
for prerenal, intrinsic renal, or postrenal ARF. For e, a subject undergoing or
having undergone major ar surgery, coronary artery bypass, or other cardiac
y; a subject having pre-existing congestive heart e, preeclampsia, sia,
diabetes mellitus, ension, ry artery disease, proteinuria, renal insufficiency,
glomerular filtration below the normal range, cirrhosis, serum creatinine above the
normal range, or sepsis; or a subject exposed to NSAIDs, cyclosporines, tacrolimus,
aminoglycosides, foscarnet, ethylene glycol, hemoglobin, myoglobin, ifosfamide, heavy
metals, methotrexate, aque contrast , or streptozotocin are all preferred
subjects for monitoring risks according to the methods described herein. This list is not
meant to be limiting. By “pre-existence” in this t is meant that the risk factor exists
at the time the body fluid sample is ed from the subject. In particularly preferred
embodiments, a subject is chosen for risk stratification based on an existing diagnosis of
injury to renal function, reduced renal function, or ARF.
In other embodiments, the methods for evaluating renal status described herein
are methods for diagnosing a renal injury in the subject; that is, ing whether or not a
t has suffered from an injury to renal function, reduced renal function, or ARF. In
these embodiments, the assay result(s), for example measured concentration(s) of one or
more biomarkers selected from the group consisting of ocalcin-l, Antithrombin-III,
Toll-like receptor 2, Triiodothyronine (T3), Thyroxine (T4), Extracellular matrix protein
1, Coagulation factor XIII A chain, Coagulation factor XIII B chain, Interleukin-17F,
Interleukin-22, Vitronectin, Progesterone, Estradiol, Growth/differentiation factor 15, and
tein convertase subtilisin/kexin type 9 is/are correlated to the occurrence or
nonoccurrence of a change in renal status. The following are red diagnostic
embodiments.
In red diagnostic embodiments, these methods comprise diagnosing the
occurrence or urrence of an injury to renal function, and the assay result(s) is/are
correlated to the occurrence or nonoccurrence of such an injury. For example, each of the
measured concentration(s) may be compared to a threshold value. For a ve going
marker, an increased likelihood of the occurrence of an injury to renal function is
assigned to the subject when the measured concentration is above the threshold (relative
to the likelihood assigned when the measured tration is below the threshold);
alternatively, when the measured concentration is below the old, an increased
likelihood of the nonoccurrence of an injury to renal function may be assigned to the
subject (relative to the likelihood assigned when the measured concentration is above the
threshold). For a negative going marker, an increased likelihood of the occurrence of an
injury to renal function is assigned to the subject when the measured concentration is
below the threshold (relative to the likelihood assigned when the measured concentration
is above the threshold); alternatively, when the ed concentration is above the
threshold, an sed likelihood of the nonoccurrence of an injury to renal function may
be assigned to the subject (relative to the likelihood ed when the measured
concentration is below the threshold).
In other preferred diagnostic embodiments, these s comprise
diagnosing the occurrence or nonoccurrence of reduced renal function, and the assay
result(s) is/are correlated to the occurrence or nonoccurrence of an injury causing reduced
renal function. For example, each of the measured tration(s) may be compared to a
threshold value. For a positive going marker, an increased likelihood of the occurrence of
an injury causing reduced renal on is assigned to the subject when the measured
concentration is above the threshold (relative to the likelihood assigned when the
measured concentration is below the threshold); alternatively, when the measured
concentration is below the threshold, an increased likelihood of the nonoccurrence of an
injury causing reduced renal function may be assigned to the subject (relative to the
likelihood assigned when the measured concentration is above the threshold). For a
negative going marker, an increased hood of the occurrence of an injury causing
d renal function is assigned to the subject when the measured concentration is
below the threshold (relative to the hood assigned when the measured tration
is above the threshold); alternatively, when the measured concentration is above the
threshold, an increased likelihood of the nonoccurrence of an injury causing reduced renal
function may be assigned to the subject (relative to the likelihood assigned when the
measured tration is below the threshold).
In yet other preferred diagnostic embodiments, these methods comprise
diagnosing the occurrence or urrence of ARF, and the assay result(s) is/are
ated to the occurrence or nonoccurrence of an injury causing ARF. For example,
each of the measured concentration(s) may be compared to a threshold value. For a
positive going marker, an increased hood of the occurrence of ARF is assigned to
the subject when the measured concentration is above the threshold (relative to the
hood assigned when the measured tration is below the threshold);
atively, when the measured concentration is below the threshold, an sed
likelihood of the nonoccurrence of ARF may be assigned to the subject (relative to the
likelihood assigned when the measured concentration is above the threshold). For a
negative going marker, an increased likelihood of the occurrence of ARF is ed to
the subject when the ed concentration is below the threshold (relative to the
likelihood assigned when the measured concentration is above the threshold);
alternatively, when the measured concentration is above the threshold, an increased
likelihood of the nonoccurrence of ARF may be assigned to the subject ive to the
likelihood assigned when the measured concentration is below the threshold).
In still other preferred diagnostic embodiments, these methods comprise
diagnosing a subject as being in need of renal replacement therapy, and the assay result(s)
is/are correlated to a need for renal replacement therapy. For example, each of the
measured concentration(s) may be compared to a threshold value. For a positive going
marker, an increased likelihood of the occurrence of an injury creating a need for renal
replacement therapy is assigned to the subject when the measured concentration is above
the threshold (relative to the likelihood assigned when the measured concentration is
below the threshold); alternatively, when the measured concentration is below the
threshold, an increased likelihood of the nonoccurrence of an injury creating a need for
renal replacement therapy may be assigned to the subject (relative to the likelihood
assigned when the measured concentration is above the threshold). For a negative going
marker, an increased likelihood of the occurrence of an injury creating a need for renal
ement therapy is assigned to the subject when the measured concentration is below
the threshold (relative to the hood assigned when the measured concentration is
above the old); alternatively, when the measured concentration is above the
old, an increased likelihood of the nonoccurrence of an injury creating a need for
renal replacement therapy may be assigned to the t ive to the likelihood
assigned when the measured concentration is below the threshold).
In still other preferred stic embodiments, these methods comprise
diagnosing a subject as being in need of renal transplantation, and the assay result(s0
is/are correlated to a need for renal transplantation. For example, each of the measured
concentration(s) may be compared to a threshold value. For a positive going marker, an
sed likelihood of the ence of an injury creating a need for renal
transplantation is assigned to the subject when the measured concentration is above the
threshold (relative to the likelihood assigned when the measured concentration is below
the threshold); alternatively, when the measured concentration is below the threshold, an
increased hood of the nonoccurrence of an injury creating a need for renal
transplantation may be assigned to the subject (relative to the likelihood assigned when
the measured concentration is above the threshold). For a negative going marker, an
increased likelihood of the occurrence of an injury creating a need for renal
transplantation is assigned to the t when the measured concentration is below the
threshold (relative to the likelihood assigned when the measured tration is above
the old); alternatively, when the measured concentration is above the threshold, an
sed likelihood of the nonoccurrence of an injury creating a need for renal
transplantation may be assigned to the subject (relative to the likelihood assigned when
the measured concentration is below the threshold).
In still other ments, the methods for evaluating renal status described
herein are methods for monitoring a renal injury in the subject; that is, assessing whether
or not renal function is improving or worsening in a subject who has suffered from an
injury to renal function, reduced renal function, or ARF. In these ments, the assay
result(s), for e measured concentration(s) of one or more biomarkers selected from
the group consisting of Stanniocalcin-l, rombin-III, ike receptor 2,
Triiodothyronine (T3), Thyroxine (T4), Extracellular matrix protein 1, Coagulation factor
XIII A chain, Coagulation factor XIII B chain, Interleukin-17F, Interleukin-22,
Vitronectin, Progesterone, Estradiol, Growth/differentiation factor 15, and Proprotein
convertase subtilisin/kexin type 9 is/are correlated to the occurrence or nonoccurrence of
a change in renal status. The following are preferred monitoring ments.
[003 1] In red monitoring embodiments, these s comprise monitoring
renal status in a subject suffering from an injury to renal function, and the assay result(s)
is/are correlated to the occurrence or nonoccurrence of a change in renal status in the
subject. For example, the measured concentration(s) may be compared to a threshold
value. For a positive going marker, when the measured concentration is above the
threshold, a worsening of renal function may be assigned to the subject; atively,
when the measured concentration is below the threshold, an improvement of renal
function may be ed to the subject. For a negative going marker, when the measured
tration is below the threshold, a worsening of renal on may be assigned to
the subject; alternatively, when the measured concentration is above the threshold, an
improvement of renal function may be assigned to the subject.
In other preferred monitoring embodiments, these methods comprise
monitoring renal status in a subject suffering from reduced renal function, and the assay
result(s) is/are correlated to the occurrence or urrence of a change in renal status in
the subject. For example, the measured concentration(s) may be compared to a threshold
value. For a positive going marker, when the measured concentration is above the
threshold, a worsening of renal function may be assigned to the subject; alternatively,
when the measured concentration is below the old, an improvement of renal
function may be ed to the subject. For a negative going marker, when the measured
concentration is below the threshold, a worsening of renal function may be assigned to
the subject; alternatively, when the measured concentration is above the threshold, an
ement of renal function may be assigned to the subject.
In yet other preferred monitoring embodiments, these methods comprise
monitoring renal status in a subject suffering from acute renal failure, and the assay
result(s) is/are correlated to the occurrence or nonoccurrence of a change in renal status in
the subject. For example, the measured concentration(s) may be compared to a threshold
value. For a positive going , when the measured concentration is above the
threshold, a ing of renal function may be assigned to the subject; alternatively,
when the measured concentration is below the threshold, an improvement of renal
function may be assigned to the t. For a negative going marker, when the measured
tration is below the threshold, a worsening of renal function may be ed to
the subject; alternatively, when the measured concentration is above the threshold, an
improvement of renal function may be ed to the subject.
In other additional preferred monitoring embodiments, these methods
comprise monitoring renal status in a subject at risk of an injury to renal function due to
the istence of one or more known risk factors for prerenal, intrinsic renal, or
postrenal ARF, and the assay result(s) is/are correlated to the occurrence or
nonoccurrence of a change in renal status in the subject. For example, the measured
concentration(s) may be compared to a threshold value. For a positive going marker,
when the measured concentration is above the old, a worsening of renal function
may be assigned to the subject; alternatively, when the measured concentration is below
the threshold, an improvement of renal function may be ed to the subject. For a
negative going marker, when the measured tration is below the threshold, a
worsening of renal function may be ed to the subject; alternatively, when the
measured concentration is above the threshold, an improvement of renal function may be
assigned to the subject.
In still other embodiments, the methods for evaluating renal status described
herein are methods for classifying a renal injury in the subject; that is, determining
whether a renal injury in a subject is prerenal, intrinsic renal, or postrenal; and/or r
subdividing these classes into subclasses such as acute tubular injury, acute
glomerulonephritis acute tubulointerstitial nephritis, acute vascular nephropathy, or
infiltrative disease; and/or assigning a likelihood that a subject will progress to a
particular RIFLE stage. In these embodiments, the assay (s), for example ed
concentration(s) of one or more biomarkers selected from the group consisting of
Stanniocalcin-l, Antithrombin-III, Toll-like receptor 2, Triiodothyronine (T3), Thyroxine
(T4), Extracellular matrix protein 1, Coagulation factor XIII A chain, Coagulation factor
XIII B chain, Interleukin-17F, Interleukin-22, Vitronectin, Progesterone, iol,
Growth/differentiation factor 15, and Proprotein tase subtilisin/kexin type 9 is/are
correlated to a particular class and/or subclass. The following are preferred classification
embodiments.
In preferred classification embodiments, these methods comprise ining
whether a renal injury in a subject is prerenal, intrinsic renal, or postrenal; and/or further
subdividing these s into subclasses such as acute tubular injury, acute
glomerulonephritis acute tubulointerstitial nephritis, acute vascular nephropathy, or
infiltrative disease; and/or assigning a likelihood that a subject will progress to a
particular RIFLE stage, and the assay result(s) is/are correlated to the injury classification
for the subject. For example, the measured concentration may be compared to a threshold
value, and when the measured tration is above the threshold, a particular
classification is ed; alternatively, when the measured concentration is below the
old, a different classification may be assigned to the subject.
A variety of methods may be used by the skilled artisan to arrive at a d
threshold value for use in these methods. For example, the threshold value may be
determined from a population of normal ts by selecting a concentration
representing the 75th, 85th, 90th, 95th, or 99th percentile of a kidney injury marker
measured in such normal subjects. Alternatively, the threshold value may be determined
from a “diseased” population of subjects, e. g., those suffering from an injury or having a
predisposition for an injury (e.g., progression to ARF or some other clinical outcome such
as death, dialysis, renal transplantation, etc.), by selecting a concentration representing the
75th, 85th, 90th, 95th, or 99th tile of a kidney injury marker ed in such
subjects. In another alternative, the threshold value may be ined from a prior
measurement of a kidney injury marker in the same subject; that is, a temporal change in
the level of a kidney injury marker in the t may be used to assign risk to the subject.
The foregoing discussion is not meant to imply, however, that the kidney
injury markers of the present invention must be compared to corresponding individual
thresholds. Methods for combining assay results can comprise the use of multivariate
logistical regression, loglinear modeling, neural network analysis, n-of-m analysis,
decision tree is, calculating ratios of s, etc. This list is not meant to be
limiting. In these methods, a composite result which is determined by combining
individual markers may be treated as if it is itself a marker; that is, a threshold may be
determined for the composite result as described herein for individual markers, and the
composite result for an individual patient compared to this old.
[003 9] The ability of a particular test to distinguish two populations can be
ished using ROC analysis. For example, ROC curves established from a “first”
subpopulation which is posed to one or more future changes in renal status, and a
“second” subpopulation which is not so predisposed can be used to calculate a ROC
curve, and the area under the curve provides a measure of the quality of the test.
Preferably, the tests described herein provide a ROC curve area greater than 0.5,
preferably at least 0.6, more preferably 0.7, still more preferably at least 0.8, even more
preferably at least 0.9, and most preferably at least 0.95.
In certain aspects, the measured concentration of one or more kidney injury
markers, or a composite of such markers, may be treated as continuous variables. For
example, any particular concentration can be converted into a corresponding probability
of a future ion in renal function for the subject, the occurrence of an injury, a
classification, etc. In yet another ative, a threshold that can provide an acceptable
level of specificity and sensitivity in ting a population of ts into “bins” such
as a “first” ulation (e. g., which is predisposed to one or more future changes in
renal status, the occurrence of an injury, a fication, etc.) and a “second”
subpopulation which is not so predisposed. A threshold value is ed to separate this
first and second population by one or more of the following measures of test accuracy:
an odds ratio greater than 1, preferably at least about 2 or more or about 0.5 or less, more
preferably at least about 3 or more or about 0.33 or less, still more preferably at least
about 4 or more or about 0.25 or less, even more preferably at least about 5 or more or
about 0.2 or less, and most preferably at least about 10 or more or about 0.1 or less;
a specificity of greater than 0.5, preferably at least about 0.6, more preferably at least
about 0.7, still more preferably at least about 0.8, even more preferably at least about 0.9
and most preferably at least about 0.95, with a corresponding sensitivity greater than 0.2,
preferably greater than about 0.3, more preferably greater than about 0.4, still more
preferably at least about 0.5, even more ably about 0.6, yet more preferably greater
than about 0.7, still more preferably greater than about 0.8, more preferably greater than
about 0.9, and most preferably greater than about 0.95;
a sensitivity of greater than 0.5, preferably at least about 0.6, more preferably at least
about 0.7, still more preferably at least about 0.8, even more preferably at least about 0.9
and most preferably at least about 0.95, with a corresponding specificity greater than 0.2,
preferably greater than about 0.3, more ably r than about 0.4, still more
preferably at least about 0.5, even more preferably about 0.6, yet more preferably r
than about 0.7, still more preferably greater than about 0.8, more preferably greater than
about 0.9, and most preferably r than about 0.95;
at least about 75% sensitivity, combined with at least about 75% specificity;
a positive likelihood ratio (calculated as sensitivity/(l-specificity)) of greater than 1, at
least about 2, more preferably at least about 3, still more preferably at least about 5, and
most ably at least about 10; or
a negative likelihood ratio (calculated as (l-sensitivity)/specificity) of less than 1, less
than or equal to about 0.5, more preferably less than or equal to about 0.3, and most
preferably less than or equal to about 0.1.
The term “about” in the context of any of the above measurements refers to +/- 5% of a
given measurement.
le thresholds may also be used to assess renal status in a subject. For
example, a “first” ulation which is predisposed to one or more future s in
renal status, the ence of an injury, a fication, etc., and a “second”
subpopulation which is not so predisposed can be combined into a single group. This
group is then subdivided into three or more equal parts (known as tertiles, quartiles,
quintiles, etc., depending on the number of subdivisions). An odds ratio is assigned to
subjects based on which subdivision they fall into. If one considers a tertile, the lowest or
highest tertile can be used as a reference for comparison of the other subdivisions. This
reference subdivision is assigned an odds ratio of l. The second tertile is assigned an odds
ratio that is relative to that first tertile. That is, someone in the second tertile might be 3
times more likely to suffer one or more future changes in renal status in comparison to
someone in the first tertile. The third tertile is also assigned an odds ratio that is relative to
that first tertile.
In certain embodiments, the assay method is an immunoassay. Antibodies for
use in such assays will specifically bind a full length kidney injury marker of interest, and
may also bind one or more polypeptides that are “related” thereto, as that term is defined
hereinafter. Numerous immunoassay s are known to those of skill in the art.
Preferred body fluid samples are ed from the group consisting of urine, blood,
serum, saliva, tears, and plasma. In the case of those kidney injury markers which are
membrane proteins as described hereinafter, preferred assays detect soluble forms thereof.
The foregoing method steps should not be interpreted to mean that the kidney
injury marker assay result(s) is/are used in isolation in the methods described herein.
Rather, additional variables or other clinical indicia may be included in the methods
described herein. For example, a risk fication, diagnostic, classification, monitoring,
etc. method may combine the assay result(s) with one or more variables ed for the
subject selected from the group consisting of demographic information (e. g., weight, sex,
age, race), medical y (e. g., family history, type of surgery, pre-existing disease such
as sm, congestive heart failure, preeclampsia, eclampsia, diabetes mellitus,
hypertension, coronary artery disease, nuria, renal insufficiency, or sepsis, type of
toxin exposure such as NSAIDs, cyclosporines, tacrolimus, aminoglycosides, foscamet,
ethylene glycol, hemoglobin, myoglobin, ifosfamide, heavy metals, methotrexate,
radiopaque contrast agents, or streptozotocin), clinical variables (e. g., blood pressure,
temperature, respiration rate), risk scores (APACHE score, PREDICT score, TIMI Risk
Score for UA/NSTEMI, Framingham Risk Score, risk scores of Thakar et al. (J. Am. Soc.
Nephrol. 16: 162-68, 2005), Mehran et al. (J. Am. Coll. Cardiol. 44: 1393-99, 2004),
Wijeysundera et al. (JAMA 297: 1801-9, 2007), Goldstein and Chawla (Clin. J. Am. Soc.
Nephrol. 5: 943-49, 2010), or Chawla et al. (Kidney Intl. 68: 2274-80, 2005)), a
glomerular filtration rate, an estimated glomerular filtration rate, a urine production rate, a
serum or plasma creatinine tration, a urine creatinine concentration, a fractional
excretion of , a urine sodium concentration, a urine creatinine to serum or plasma
creatinine ratio, a urine specific gravity, a urine osmolality, a urine urea en to
plasma urea nitrogen ratio, a plasma BUN to ine ratio, a renal e index
calculated as urine sodium / (urine creatinine / plasma creatinine), a serum or plasma
neutrophil gelatinase (NGAL) concentration, a urine NGAL concentration, a serum or
plasma cystatin C tration, a serum or plasma cardiac troponin concentration, a
serum or plasma BNP concentration, a serum or plasma NTproBNP concentration, and a
serum or plasma proBNP concentration. Other measures of renal function which may be
combined with one or more kidney injury marker assay result(s) are described hereinafter
and in Harrison’s Principles of Internal Medicine, l7Lh Ed., McGraw Hill, New York,
pages 1741-1830, and Current Medical Diagnosis & Treatment 2008, 47Lh Ed, McGraw
Hill, New York, pages 785-815, each of which are hereby incorporated by nce in
their entirety.
When more than one marker is measured, the individual s may be
measured in samples obtained at the same time, or may be determined from samples
obtained at different (e. g., an earlier or later) times. The individual markers may also be
ed on the same or ent body fluid samples. For example, one kidney injury
marker may be measured in a serum or plasma sample and another kidney injury marker
may be ed in a urine sample. In addition, assignment of a likelihood may combine
an individual kidney injury marker assay result with temporal changes in one or more
additional variables.
In various related aspects, the present invention also relates to devices and kits
for performing the methods described herein. Suitable kits comprise reagents sufficient
for performing an assay for at least one of the described kidney injury markers, together
with instructions for performing the described threshold comparisons.
In certain embodiments, reagents for ming such assays are provided in
an assay , and such assay devices may be included in such a kit. Preferred reagents
can comprise one or more solid phase antibodies, the solid phase antibody comprising
antibody that detects the intended biomarker target(s) bound to a solid support. In the case
of sandwich immunoassays, such reagents can also include one or more detectably
labeled antibodies, the detectably labeled antibody comprising antibody that detects the
intended biomarker target(s) bound to a able label. Additional optional ts
that may be provided as part of an assay device are described hereinafter.
Detectable labels may include molecules that are themselves detectable (e. g.,
fluorescent moieties, electrochemical labels, ecl (electrochemical luminescence) labels,
metal chelates, dal metal particles, etc.) as well as molecules that may be indirectly
detected by production of a detectable reaction product (e. g., enzymes such as adish
dase, alkaline phosphatase, etc.) or h the use of a specific binding molecule
which itself may be detectable (e. g., a labeled antibody that binds to the second antibody,
biotin, digoxigenin, maltose, oligohistidine, 2,4-dintrobenzene, phenylarsenate, ssDNA,
dsDNA, etc.).
Generation of a signal from the signal development element can be
performed using various optical, acoustical, and electrochemical methods well known in
the art. es of detection modes include fluorescence, radiochemical detection,
reflectance, absorbance, amperometry, conductance, impedance, interferometry,
ometry, etc. In certain of these methods, the solid phase antibody is coupled to a
transducer (e. g., a diffraction grating, electrochemical sensor, etc) for generation of a
signal, while in others, a signal is generated by a transducer that is spatially separate from
the solid phase antibody (e. g., a eter that employs an excitation light source and
an optical or). This list is not meant to be limiting. Antibody-based biosensors may
also be employed to ine the presence or amount of analytes that optionally
eliminate the need for a labeled molecule.
DETAILED DESCRIPTION OF THE INVENTION
The present ion relates to methods and compositions for diagnosis,
differential diagnosis, risk stratification, monitoring, classifying and determination of
treatment regimens in subjects suffering or at risk of suffering from injury to renal
function, reduced renal on and/or acute renal failure through ement of one or
more kidney injury markers. In various embodiments, a measured concentration of one or
more biomarkers selected from the group consisting of Stanniocalcin-l, Antithrombin-III,
ike receptor 2, Triiodothyronine (T3), Thyroxine (T4), Extracellular matrix protein
1, Coagulation factor XIII A chain, ation factor XIII B chain, Interleukin-17F,
Interleukin-22, Vitronectin, Progesterone, Estradiol, Growth/differentiation factor 15, and
Proprotein convertase subtilisin/kexin type 9 or one or more markers related thereto, are
correlated to the renal status of the subject.
For purposes of this nt, the following tions apply:
[005 1] As used herein, an “injury to renal function” is an abrupt (within 14 days,
ably within 7 days, more preferably within 72 hours, and still more preferably
within 48 hours) able reduction in a measure of renal function. Such an injury may
be identified, for example, by a decrease in glomerular filtration rate or estimated GFR, a
reduction in urine output, an increase in serum creatinine, an increase in serum cystatin C,
a requirement for renal replacement therapy, etc. “Improvement in Renal Function” is an
abrupt (within 14 days, preferably within 7 days, more preferably within 72 hours, and
still more preferably within 48 hours) able increase in a measure of renal function.
Preferred methods for measuring and/or estimating GFR are described hereinafter.
As used herein, “reduced renal function” is an abrupt (within 14 days,
preferably within 7 days, more preferably within 72 hours, and still more preferably
within 48 hours) reduction in kidney function identified by an absolute increase in serum
creatinine of r than or equal to 0.1 mg/dL (2 8.8 umol/L), a percentage increase in
serum creatinine of greater than or equal to 20% (l .2-fold from baseline), or a reduction
in urine output (documented oliguria of less than 0. 5 ml/kg per hour).
As used herein, “acute renal failure” or “ARF” is an abrupt n 14 days,
preferably within 7 days, more ably within 72 hours, and still more preferably
within 48 hours) reduction in kidney function identified by an absolute increase in serum
creatinine of r than or equal to 0.3 mg/dl (2 26.4 umol/l), a percentage increase in
serum creatinine of greater than or equal to 50% (l. 5-fold from baseline), or a ion
in urine output (documented oliguria of less than 0.5 ml/kg per hour for at least 6 hours).
This term is synonymous with “acute kidney injury” or “AKI.”
The following biomarkers (listed with the Swiss-Prot entry number of the
human precursor) find use in the present invention as kidney injury markers:
Swiss-Prot Entry # Name
P52823 Stanniocalcin-l
P01008 Antithrombin-III
060603 Toll-like rece tor 2
na Triiodothyronine (T3)
na Thyroxine (T4)
Q16610 Extracellular matrix rotein l
P00488 Coagulation factor XIII A chain
P05160 Coagulation factor XIII B chain
Q96PD4 Interleukin-17F
Q9GZX6 Interleukin-22
P04004 Vitronectin
na Progesterone
na iol
Q99988 Growth/differentiation factor 15
Q8NBP7 Proprotein convertase subtilisin/kexin type 9
na — not applicable
As used herein, the term “Triiodothyroxine” refers to the thyroid hormone also
known as T3, while “Thyroxine” refers to the thyroid hormone known as T4. T3 is a
product of deiodination of T4 by enzymes in the thyroid. T3 and T4 are carried in the
circulation by thyroxine-binding globulins, thyroxine binding prealbumins, and albumins.
As a consequence of structural differences, T3 and T4 may be distinguished from one
another, for example using antibodies that are ic for differences between the
hormones.
Estradiol ((178)-estra-l,3,5(10)-triene-3,l7-diol) is a steroid e that is
the predominant estrogen in females during uctive years both in terms of absolute
serum levels as well as in terms of estrogenic activity. During menopause, estrone is the
predominant circulating estrogen and during pregnancy estriol is the inant
circulating estrogen in terms of serum levels. Estradiol is also present in males, being
produced as an active metabolic product of testosterone. The serum levels of estradiol in
males (14 -55 pg/mL) are roughly comparable to those of postmenopausal women (< 35
Progesterone (pregnene-3,20-dione) is a C-21 steroid e. In women,
progesterone levels are relatively low during the preovulatory phase of the menstrual
cycle, rise after ovulation, and are elevated during the luteal phase. Progesterone levels
are relatively low in children and postmenopausal women, while adult males have levels
similar to those in women during the follicular phase of the menstrual cycle.
As used herein, the term “Stanniocalcin-l” refers to one or more polypeptides
present in a biological sample that are derived from the Stanniocalcin-l precursor (human
precursor: Prot P52823 (SEQ ID NO: 1))
20 3O 4O 50 6O
WLQNSAVLLV LVISASAiHfl AflQNDSVSPR KSRVAAQNSA EVVRCLNSAL FACL
7O 8O 90 100 110 120
ENSTCDTDGM YDICKSFLYS AAKED.QGKA bVKLSLKCIA VGVTSKVFJA IQQCSTFQQM
130 140 150 160 170 180
IAflVQflfiCYS KLNVCSIAKR NPfiAI_flVVQ LPNiFSNQYY VQLVRS.LfiC DfiDiVSiIQD
190 200 210 220 230 240
SLWEKIGPNM LQTD PRAD FNRQRTN?PQ QNIR GfifiDSPSHIK
RTSiESA
[005 9] The following domains have been identified in Stanniocalcin-l:
Residues Length Domain ID
1-17 17 Signal peptide
18-33 16 Propeptide
34-247 214 Stanniocalcin-l
As used herein, the term “Proprotein convertase subtilisin/kexin type 9” refers
to one or more polypeptides present in a biological sample that are derived from the
Proprotein convertase subtilisin/kexin type 9 precursor (human precursor: Swiss-Prot
Q8NBP7 (SEQ ID NO: 2))
20 3O 4O 50 6O
MGTVSSRRSW WP.PLTJJJJ.T.1GPAGARA DYfifl LVLAIRSfifiD fiHGi
7O 8O 90 100 110 120
TATFHRCAKD LYVV VuKflfiLHLSQ R.QA QAARRGYITK IIHVFHGL.P
130 140 150 160 170 180
GFLVKMSGDL L?.A.K.PHV DYIflfiDSSVb N.?R ITPPQYRADE YQPPDGGSJV
190 200 210 220 230 240
TSIQ SDiRfiIfiGRV MVlDbfiNVPfi fiDGiRhHQQA SKCDSHGTHA AGVVSGQDAG
250 260 270 280 290 300
VAKGASMRSL QVJNCQGKGT VSGTLIGLEF IQKSQLVQPV LPLA GGYSRVJNAA
310 320 330 340 350 360
CQRLARAGVV JVTAAGNFRD DACLYSPASA PEVITVGATN AQDQPVTIGT .GTNFGRCVD
370 380 390 ~00 ~10 ~20
LFAPGEDIIG ASSDCSTCFV SQSGTSQAAA AWML SAfiPflL_IAfl .RQRLliFSA
~30 440 450 ~60 ~70 ~80
KDVINflAWbP flDQRV._PVL VAALPPSTHG AGWQLFCQTV WSAHSGPTQW ATAVARCAPD
~90 500 510 520 530 540
*flILSCSSFS RSGKRRGfiQM IVCR AHNAFGGEGV YAIARCCLJP QAVCSVHTAP
550 560 570 580 590 600
PAEASMGTRV {CHQQGHVJT GCSSHWflVflD LG_HKPPVLR PRGQPNQCVG HREASIHASC
610 620 630 640 650 660
CHAPGLflCKV KfiHGIPAPQL QViVACfifiGW 1L_GCSALPG TSHVLGAYAV DNTCVVRSRD
670 680 690
VSTTGSTSEG AVTAVAICCR SRHLAQASQE LQ
The ing domains have been identified in Proprotein convertase
subtilisin/kexin type 9:
Residues Length Domain ID
1-30 30 Signal peptide
3 1- 152 122 Propeptide
153-692 540 Proprotein convertase subtilisin/kexin type 9
1-174 —> MSPWK (SEQ ID NO: 3) in isoform 2
333-365 —> GRTSLVPPATAAPALCHRVGHHRLLPTWLALQP
(SEQ ID NO: 4) in isoform 2
366-692 Missing in isoform 2
As used herein, the term “Interleukin-22” refers to one or more polypeptides
present in a biological sample that are derived from the eukin-22 precursor (human
precursor: Swiss-Prot Q9GZX6 (SEQ ID NO: 5))
20 3O 4O 50 6O
MAALQKSVSS FLMGTLATSC LLLLALDVQG GAAAPISSHC QDDKSNFQQP YITNQTFMLA
7O 8O 90 100 110 120
KEASIADNNT DVRLIGEKIF HGVSMSEQCY LMKQVTVEII flflVTbPQSDR FQPYWQEVVP
130 140 150 160 170
FIARISNRLS TCHI?GDD.H IQRNVQKDKD IVKKLGfiSGfi IKAIG?LDL. ACI
The following domains have been identified in Interleukin-22:
Residues Length Domain ID
1-33 33 Signal peptide
34- 179 146 Interleukin-22
As used herein, the term “Coagulation factor XIII A chain” refers to one or
more polypeptides present in a biological sample that are derived from the Coagulation
factor XIII A chain precursor (human precursor: Swiss-Prot P00488 (SEQ ID NO: 6))
20 3O 4O 50 6O
MSLISR_AEG GRRAVPPNNS NAAflDDLPIV flLQGVVPRGV NLQLELNVIS RWDI
7O 8O 90 100 110 120
NKVDHH_DKY LNNKLIVRRG QSFYVQIDFS RDLF RVEYVIGRYP QENKGTYIPV
130 140 150 160 170 180
PIVSELQSGK WGAKIVMRED QSVQLSIQSS PKCIVGKFRM YVAVWTPYGV LQTSRNPETD
190 200 210 220 230 240
TYIIFNPWC? DDAVYLDNfiK flRflflYVLNDI GVIFYGEVND IKTRSWSYGQ F?DGILDTC.
250 260 270 280 290 300
YVMDRAQMDD SGRGNPIKVS QVGSAMVNAK DDEGVLVGSW GVPP SAWTGSVDID
310 320 330 340 350 360
LfiYQSSflNPV RYGQCWVFAG VFNTFDRCLG IPARIVTRYF SAHDNDARDQ flDGV
370 380 390 ~00 ~10 ~20
VVSKLTKDSV WNYHCWNEAW MTRPDDPVGF GGWQAVDS_P QLNSDGMYQC GPASVQAIKi
~30 440 450 ~60 ~70 ~80
GiVCFQFDAP FVFAEVNSDL IYIIAKKDGI HVVLNVDA.H IGKDIVTKQI GGDGMMDITD
~90 500 510 520 530 540
iYKbQfiGQfifi fiRLAIfiIALM YGAKKPLVTE GVMKSRSVVD MDbflVflNAVL SITF
550 560 570 580 590 600
QNNSHVRYTI NIIE YIGVPKAflbK KflibDVi.flP LSbKKflAVLI QAG?YMGQ.L
610 620 630 640 650 660
LQASLitiI ARINLIRDVL AKQKSIV._I PfiIIIKVRGI MIVI VQEINPLKLI
670 680 690 700 710 720
DQNVWVHDDG PGVTQPMKKM bRLIRPNS_V QWfifiVCRPWV SGHRKDIASM HVYG
?.DVQIQ?RP SM
The following domains have been identified in ation factor XIII A
chain:
Residues Length Domain ID
1 l Initiator methionine
2-38 37 Activation peptide
39-732 694 Coagulation factor XIII A chain
As used herein, the term “Toll-like receptor 2” refers to one or more
polypeptides present in a biological sample that are d from the Toll-like receptor 2
precursor (human sequence: Swiss-Prot 060603 (SEQ ID NO: 7)):
20 30 40 50 60
MPHTLWMVWV LGVIISLSKfl flSSNQASLSC DRNGICKGSS GSLNSIPSGL TEAVKSLDLS
70 80 90 100 110 120
NNRITYISNS D.QRCVNLQA .VLISNGINI InnDStSSLG SL?HLD.SYN YLSNLSSSWF
130 140 150 160 170 180
KPISSITFLV L.GVPYKTLG ?TSLFSHLTK LQI.RVGNMD TFTKIQRKDb AGLibLflflLfl
190 200 210 220 230 240
IDASD.QSY? PKS.KSIQNV SHLILHMKQH I. .nItVDV _SSVnC.n.R DID.DIb{bS
250 260 270 280 290 300
n.81GniNs. RNVK ITDESLFQVM K. VQISGT nLntDDCi.N GVGVFRASDN
310 320 330 340 350 360
DRVIDPGKV? TLTIRR.HIP RFY.FYDLST RVKR ITV?VSKVF. VPC..SQP.K
370 380 390 ~00 ~10 ~20
LSfiV LMVnnY.KNs AC?DAWPSIQ TLI.RQNI.A s.nKiG«i.. iLKV.iNIDI
~30 440 450 ~60 ~70 ~80
SKVStHSMPL .CQWPnKMKY .N.SSTRI{S V.GCIPKi.n I.DVSNVR.V LFS.VLPQ.K
~90 500 510 520 530 540
?.YISRVKLW TLPDASLLPM JLVLKISRVA I.itSKnQ.D ShiILKILLA GGNVFICSCE
550 560 570 580 590 600
nQQA .AKV.IDWPA VYLCDSPSiV RGQQVQDVR. SVS?CHRTA. VSGWCCA.F.
610 620 630 640 650 660
LI..TGVLCH RFHGJWYWKM WWAWLQAKRK PRKAPSRNIC YDAFVSYSER DAYWV?N.MV
670 680 690 700 710 720
Qn.nNtVPPt KLCniKRDFI PGKWIIDNII IKIV bV.SfiNbVKS nWCKYnLDtS
730 740 750 760 770 780
HFR.FD?NND AAI.IL.«PI nKKAIPQRFC VIKI YLnWPMDnAQ RnGtWVN.RA
AIKS
In n embodiments, the Toll-like receptor 2 assay detects one or more
soluble forms of Toll-like receptor 2. Toll-like receptor 2 is a single-pass membrane
protein having an extracellular domain which may be found in soluble forms of Toll-like
receptor 2 generated by proteolysis of the membrane-bound form or by alternative
splicing. In the case of an immunoassay, one or more antibodies that bind to epitopes
within an extracellular domain may be used to detect these soluble form(s). The ing
domains have been fied in ike receptor 2:
Residues Length Domain ID
1-18 18 Signal e
19-784 766 Toll-like receptor 2
9 21 transmembrane domain
610-784 175 cytoplasmic domain
19-588 570 ellular domain
As used , the term “Antithrombin-III” refers to one or more
polypeptides present in a biological sample that are derived from the Antithrombin-III
precursor (human precursor: Swiss-Prot P01008 (SEQ ID NO: 8))
20 30 40 50 60
MYSVVIGTVT SGKQKVYIIS LIIIGFWDCV TCHGSPVDIC TAKPRDIPMN PMCIYRSPEK
70 80 90 100 110 120
KAIfiDflGSfiQ NRQV W?.SKANSQF ATTFYQHAAD SKNDNDVIFL SPLSISTAFA
130 140 150 160 170 180
WTKAGACVDT LQQIWfiVEKh DIISLKISDQ IiFFFAKnNC RLYQKAVKSS KLVSANQLFG
190 200 210 220 230 240
DKSITFN?TY QDIS?IVYGA KLQPIDbKfiV AfiQSRAAINK WVSVKILGRI LAIN
250 260 270 280 290 300
?.TVLVLVNT IYFKGAWKSK bSPfiVIRKfi. bYKADGLSCS ASMWYQEGKF RYRQVAEGTQ
310 320 330 340 350 360
V.?LPFKGDD ITMV.ILPKP ?KSIAKVfiKfi QfiWL DflLflflWWLVV HMPQFRIEDG
370 380 390 ~00 410 420
FSIK?Q.QDM GLVDIFSP?K SKLPGIVA?G QDDIYVSDAt HKAtIflVNfifi GSflAAASIAV
430 440 450 ~60
VIAGRSANPN RVIbKANRPb LVtIRflVPIN IIIbMGRVAN PCVK
The following domains have been fied in Antithrombin-III:
Residues Length Domain ID
1-32 32 Signal peptide
33-464 432 Antithrombin-III
As used herein, the term “Vitronectin” refers to one or more polypeptides
present in a biological sample that are derived from the Vitronectin precursor (human
precursor: Prot P04004 (SEQ ID NO: 9))
20 3O 4O 50 6O
MAPIRPLLIL A.LAWVALAD Q?SCKGRCTE GFNVDKKCQC DELCSYYQSC CTDYTAECKP
7O 8O 90 100 110 120
QVIQGDVEIM PfiDfiYIVYDD GunKNNAIVi LQVGGPSLTS DnQAQSKGNP flQlPVLKPfifl
130 140 150 160 170 180
fiAPAPflVGAS KPEGIDSRPE PQPP AflflflLCSGKP FDAFTDLKNG SDFAFRGQYC
190 200 210 220 230 240
YfiLDflKAVRP RDVW DAAF TQIVCQGKTY DFKGSQYWRF EDGVLDPDYP
250 260 270 280 290 300
RVISDGFDGI PDNVDAAIA. GRE? VYFFKGKQYW EYQFQHQPSQ SLSA
310 320 330 340 350 360
VFEHFAMMQ? DSWflDItflL. tWGRiSAGi? QPQEISRDWH GVPGQVDAAM AGRIYISGMA
370 380 390 ~00 ~10 420
PRPSDAKKQ? FRHQNRKGY? SQRGHSRGQV QNSRRPSRAi WLSLESSflfiS NLGANNYDDY
430 440 450 ~60 ~70
RMDWDVPATC EPIQSVFFFS GDKYYRVNDQ TRRVDTVDPP YPRSIAQYWL GCPAPGHL
The following domains have been identified in Vitronectin:
Residues Length Domain ID
1-19 19 Signal peptide
-478 459 ectin
-398 379 Vitronectin V65 subunit
-63 44 Somatomedin-B
399-478 80 Vitronectin V10 subunit
As used herein, the term “Coagulation factor XIII B chain” refers to one or
more polypeptides present in a biological sample that are derived from the Coagulation
factor XIII B chain sor (human precursor: Swiss-Prot P05160 (SEQ ID NO: 10))
20 30 40 50 60
MRLKNDTFII IIIISGflLYA fiflKPCGbPHV LNGRIAQYYY TFKSFYFPMS IDKKDSFFCL
70 80 90 100 110 120
AGY..flSGRQ flflQilCliflG WSPflPRCtKK SVGY LYKI QENMQYGCAS
130 140 150 160 170 180
GYK..GGKDfi fiVVQCISDGW SSQP_CRKflH fi_CLAPfl.YV GNYSTTQKTF KVKDKVQYEC
190 200 210 220 230 240
ATGYYTAGGK KiflfiVficbiY GWSLTPKCTK IKCSSLQIIfi NGYbHPVKQ. YfifiGDVVbe
250 260 270 280 290 300
CHENYYLSGS DLIQCYNEGW YPflSPVCflGR QNRCPPPPLP INSKIQiHS. 1YQHGLIVHI
310 320 330 340 350 360
fiCfiLNbflIHG SAflIQCflDGK WIfiPPKCIfiG QflKVACfiflPP tIfiNGAAkLH SKIYYNGDKV
370 380 390 ~00 ~10 ~20
TYACKSGYL. HGSN?ITCN? GKWILPPfiCV flVNflNCK-PP VVflNGAVADG TGSS
~30 440 450 ~60 ~70 ~80
VflYRCNfiYY. LQGSKISQCE QGKWSSPPVC 3PCTVWVDY EMKW LFGD
~90 500 510 520 530 540
LIDFVCKQGY DISPLTPIS? LSVQCNRG?V KYPLCTRK?S KGWCTSPPLI KHGVIISSTV
550 560 570 580 590 600
DlYfiNGSSVfi HbLfl GSRflAYCLDG MWIIPPICIfi PClLSbifiMfi KWDF
610 620 630 640 650 660
DNRPHILHGfi YIflbICRGDI YPALLYIIGS DRGQ LKYPRCIPRQ STLSYQEPLR
The following domains have been identified in Coagulation factor XIII B
chain:
Residues Length Domain ID
1-20 20 Signal peptide
21-661 641 Coagulation factor XIII B chain
As used herein, the term “Interleukin-17F” refers to one or more polypeptides
present in a biological sample that are derived from the Interleukin-17F precursor (human
sor: Swiss-Prot Q96PD4 (SEQ ID NO: 11))
20 30 40 50 60
MTVKTLHGPA MVKY.L.SIL GLAFLS?AAA RKIPKVGHTF FQKPESCPPV PGGSMKLDIG
70 80 90 100 110 120
IINENQRVSM SQNIESQSTS PWNYTVTWDP NRYPSEVVQA QCRNDGCINA QGKEDISMNS
130 140 150 160
VPIQQETLVV RQKHQGCSVS FQLEKVLVTV GCTCVTPVIH HVQ
The following domains have been identified in Interleukin-17F:
Residues Length Domain ID
1-30 30 Signal peptide
31-163 133 Interleukin-17F
As used herein, the term “Extracellular matrix protein 1” refers to one or more
polypeptides present in a biological sample that are derived from the Extracellular matrix
protein 1 precursor (human precursor: Swiss-Prot Q16610 (SEQ ID NO: 12))
20 30 40 50 60
MGTTARAALV LTYLAVASAA ATGQ QQLRPfiHhQfi VGYAAPPSPP LSQSLPWDHP
70 80 90 100 110 120
DSSQiGPPFE GQSQVQPPPS QQflK .LPAQIPAfiK fiVGPPLPQ?A VPIQK?.PSL
130 140 150 160 170 180
KflGl PAPEGDQSHP fiPfiSWNAAQH CQQDRSQGGW GiRnDGFPPG QPSPDVDVQI
190 200 210 220 230 240
CLPNQQHVVY GPWNLPQSSY SHIIRQGfiIL NbufiIGYSRC CiCRSHTNR. ECAKIVWfifiA
250 260 270 280 290 300
MSRbCfiAflbS WCCI RQGLARESCE QfifiAPQPdYQ nRACPSiQPD ISSGIELPFP
310 320 330 340 350 360
PGVPTEDVIK NICHLRRFRS ATDP LQ??LLA.IQ RCC? QGNNiTCTWK
370 380 390 ~00 ~10 ~20
DKYC DQEYAVKTHH PPSP TQDECFAQRA PYPVYDQDIA TIDIGQVTPN
~30 440 450 ~60 ~70 ~80
IMGHICGRQR VATKHKHIPG LIHNWTARCC DIPFP?QACC ibIV DLCGPQRRIW
~90 500 510 520 530 540
RDPAICCYLS PGDEQVNCFN INYLQNVALV SGDTEVAKGQ GLQGSIGGIV ISSiSfiPKflfl
The following domains have been identified in Extracellular matrix protein 1:
Residues Length Domain ID
1-19 19 Signal peptide
-540 521 Extracellular matrix protein 1
237-361 Missing in isoform 2
1-71 Missing in isoform 3
72-81 —> MALPLRDRVK (SEQ ID NO: 13) in isoform 3
237-241 —> VRLGS (SEQ ID NO: 14) in isoform 3
242-250 Missing in isoform 3
74 —> GKEGRGPRPHSQPWLGERVGCSHIPPSI (SEQ ID
NO: 15) in isoform 4
As used herein, the term “Growth/differentiation factor 15” refers to one or
more polypeptides present in a biological sample that are derived from the
Growth/differentiation factor 15 precursor (human precursor: Swiss-Prot Q99988 (SEQ
ID NO: 16))
20 3O 4O 50 6O
WPGQ?IQTVN GSQWLLVL.V LSWLPHGGAL SIAflASRASb PGPSflLHSflD SQEQflIRKQY
7O 8O 90 100 110 120
?DL.T?.RAN QSWLDSN_DL VPAPAVRIIT P?VR.GSGGH LHLRISRAA. PflGIPfiASQ.
130 ..40 150 160 170 180
{QAIFQISPT ASQSWDVTQP IRRQISIAQP QAPAIHIRLS DQL. RPQ4
190 200 210 220 230 240
?.H.RPQAAR GRQRARARVG DHCPAGPGQC CRLHTVQASL DWV. SPR?VQVTMC
250 260 270 280 290 300
IGACPSQFRA ANWHAQIKTS DHRLKPDTVP APCCVPASYN PMVLIQKTDT GVSDQTYDDL
LAKDCHCI
The following domains have been identified in Growth/differentiation factor
Residues Length Domain ID
1-29 29 Signal peptide
- 194 165 Propeptide
195 -308 1 14 /differentiation factor 15
As used herein, the term ing a signal to the presence or amount” of an
analyte reflects the ing tanding. Assay signals are typically related to the
presence or amount of an analyte through the use of a standard curve calculated using
known concentrations of the analyte of interest. As the term is used herein, an assay is
“configured to detect” an analyte if an assay can generate a detectable signal indicative of
the presence or amount of a logically relevant concentration of the analyte.
Because an antibody epitope is on the order of 8 amino acids, an immunoassay
configured to detect a marker of st will also detect polypeptides related to the
marker sequence, so long as those polypeptides contain the epitope(s) necessary to bind to
the antibody or antibodies used in the assay. The term “related marker” as used herein
with regard to a biomarker such as one of the kidney injury markers described herein
refers to one or more fragments, variants, etc., of a particular marker or its biosynthetic
parent that may be detected as a surrogate for the marker itself or as independent
biomarkers. The term also refers to one or more ptides present in a biological
sample that are derived from the biomarker precursor complexed to additional s,
such as binding ns, receptors, heparin, lipids, sugars, etc.
In this regard, the skilled artisan will understand that the signals obtained from
an immunoassay are a direct result of complexes formed between one or more antibodies
and the target biomolecule (i.e., the analyte) and ptides containing the necessary
epitope(s) to which the dies bind. While such assays may detect the full length
ker and the assay result be expressed as a concentration of a biomarker of interest,
the signal from the assay is ly a result of all such “immunoreactive” polypeptides
present in the sample. Expression of biomarkers may also be determined by means other
than immunoassays, including protein ements (such as dot blots, western blots,
chromatographic methods, mass spectrometry, etc.) and nucleic acid measurements
(mRNA quatitation). This list is not meant to be limiting.
As used herein, the term “hydrocortisone” (also known as cortisol) refers to
(l l B)-l 1,17,21 -trihydroxypregnene-3,20-dione. Hydrocortisone is a steroid hormone,
or glucocorticoid, produced by the adrenal gland. It is released in response to stress and a
low level of blood glucocorticoids. Its primary functions are to increase blood sugar
through gluconeogenesis; suppress the immune system; and aid in fat, protein and
carbohydrate metabolism.
The term “positive going” marker as that term is used herein refer to a marker
that is determined to be elevated in ts suffering from a disease or condition, relative
to subjects not suffering from that disease or condition. The term ive going” marker
as that term is used herein refer to a marker that is ined to be reduced in subjects
suffering from a disease or condition, relative to subjects not suffering from that disease
or condition.
The term “subject” as used herein refers to a human or non-human organism.
Thus, the methods and compositions described herein are applicable to both human and
nary disease. Further, while a subject is preferably a living organism, the invention
described herein may be used in post-mortem analysis as well. Preferred subjects are
humans, and most preferably “patients,” which as used herein refers to living humans that
are receiving medical care for a disease or ion. This includes persons with no
defined illness who are being igated for signs of ogy.
Preferably, an analyte is measured in a sample. Such a sample may be
obtained from a subject, or may be obtained from biological materials intended to be
ed to the subject. For example, a sample may be obtained from a kidney being
evaluated for possible transplantation into a subject, and an analyte measurement used to
evaluate the kidney for preexisting damage. Preferred samples are body fluid samples.
The term “body fluid sample” as used herein refers to a sample of bodily fluid
obtained for the purpose of diagnosis, prognosis, classification or tion of a subject
of interest, such as a patient or transplant donor. In certain embodiments, such a sample
may be obtained for the e of determining the outcome of an ongoing condition or
the effect of a treatment regimen on a condition. Preferred body fluid s include
blood, serum, plasma, cerebrospinal fluid, urine, , sputum, and l effusions. In
addition, one of skill in the art would realize that certain body fluid samples would be
more readily analyzed following a fractionation or purification procedure, for example,
separation of whole blood into serum or plasma ents.
The term “diagnosis” as used herein refers to methods by which the skilled
artisan can estimate and/or determine the probability (“a likelihood”) of whether or not a
patient is suffering from a given disease or ion. In the case of the present invention,
“diagnosis” includes using the results of an assay, most preferably an immunoassay, for a
kidney injury marker of the present invention, optionally together with other clinical
teristics, to arrive at a diagnosis (that is, the occurrence or nonoccurrence) of an
acute renal injury or ARF for the subject from which a sample was obtained and assayed.
That such a diagnosis is “determined” is not meant to imply that the diagnosis is 100%
accurate. Many biomarkers are indicative of multiple conditions. The d clinician
does not use biomarker results in an informational vacuum, but rather test results are used
together with other clinical indicia to arrive at a diagnosis. Thus, a measured biomarker
level on one side of a predetermined diagnostic threshold indicates a greater likelihood of
the ence of disease in the subject relative to a measured level on the other side of
the predetermined diagnostic threshold.
Similarly, a prognostic risk signals a probability (“a hood”) that a given
course or outcome will occur. A level or a change in level of a stic indicator,
which in turn is associated with an increased probability of morbidity (e. g., worsening
renal function, future ARF, or death) is referred to as being “indicative of an increased
hood” of an adverse outcome in a t.
Marker Assays
In general, immunoassays involve contacting a sample containing or suspected
of containing a biomarker of interest with at least one dy that specifically binds to
the biomarker. A signal is then generated indicative of the presence or amount of
complexes formed by the binding of ptides in the sample to the antibody. The
signal is then related to the presence or amount of the biomarker in the sample. Numerous
s and devices are well known to the skilled artisan for the detection and analysis
of biomarkers. See, e.g., U.S. Patents 6,143,576; 6,113,855; 6,019,944; 5,985,579;
,947,124; 5,939,272; 5,922,615; 5,885,527; 5,851,776; 5,824,799; 5,679,526; 524;
and 5,480,792, and The Immunoassay Handbook, David Wild, ed. Stockton Press, New
York, 1994, each of which is hereby incorporated by reference in its entirety, ing
all tables, figures and claims.
The assay devices and methods known in the art can utilize labeled molecules
in various sandwich, competitive, or non-competitive assay s, to generate a signal
that is related to the presence or amount of the ker of interest. Suitable assay
formats also include chromatographic, mass spectrographic, and protein “blotting”
s. Additionally, certain methods and devices, such as sors and optical
immunoassays, may be employed to determine the presence or amount of analytes
without the need for a labeled molecule. See, e. g., U.S. Patents 5,631,171; and 5,955,377,
each of which is hereby incorporated by reference in its entirety, including all tables,
figures and claims. One skilled in the art also recognizes that robotic instrumentation
including but not limited to Beckman ACCESS®, Abbott AXSYM®, Roche
ELECSYS®, Dade Behring S® systems are among the immunoassay analyzers
that are capable of ming immunoassays. But any suitable immunoassay may be
utilized, for example, enzyme-linked immunoassays (ELISA), radioimmunoassays
(RIAs), competitive binding assays, and the like.
Antibodies or other ptides may be lized onto a variety of solid
supports for use in assays. Solid phases that may be used to immobilize specific binding
members e include those developed and/or used as solid phases in solid phase
binding assays. Examples of suitable solid phases include ne filters, cellulose-
based papers, beads (including polymeric, latex and paramagnetic particles), glass, silicon
wafers, microparticles, rticles, TentaGels, AgroGels, PEGA gels, SPOCC gels,
and multiple-well plates. An assay strip could be prepared by coating the antibody or a
plurality of antibodies in an array on solid support. This strip could then be dipped into
the test sample and then processed y through washes and detection steps to generate
a measurable signal, such as a colored spot. Antibodies or other polypeptides may be
bound to specific zones of assay devices either by conjugating ly to an assay device
surface, or by indirect binding. In an e of the later case, antibodies or other
polypeptides may be immobilized on particles or other solid supports, and that solid
support immobilized to the device surface.
Biological assays require methods for detection, and one of the most common
s for quantitation of results is to conjugate a detectable label to a protein or nucleic
acid that has affinity for one of the components in the biological system being studied.
Detectable labels may include molecules that are lves detectable (e.g., fluorescent
moieties, electrochemical labels, metal chelates, etc.) as well as molecules that may be
indirectly detected by production of a detectable on product (e. g., enzymes such as
horseradish peroxidase, alkaline phosphatase, etc.) or by a specific binding molecule
which itself may be detectable (e. g., biotin, digoxigenin, maltose, oligohistidine, 2,4-
dintrobenzene, phenylarsenate, ssDNA, dsDNA, etc.).
Preparation of solid phases and able label conjugates often comprise the
use of al cross-linkers. Cross-linking reagents contain at least two reactive ,
and are divided generally into homofunctional cross-linkers (containing identical reactive
groups) and heterofunctional cross-linkers (containing non-identical reactive groups).
Homobifunctional cross-linkers that couple through amines, dryls or react non-
specifically are available from many commercial sources. Maleimides, alkyl and aryl
s, alpha-haloacyls and pyridyl disulfides are thiol ve groups. Maleimides,
alkyl and aryl halides, and alpha-haloacyls react with sulfhydryls to form thiol ether
bonds, while pyridyl disulfides react with sulfhydryls to produce mixed disulfides. The
pyridyl disulfide product is cleavable. Imidoesters are also very useful for protein-protein
cross-links. A variety of heterobifunctional cross-linkers, each combining different
attributes for successful conjugation, are commercially available.
In n aspects, the present invention provides kits for the analysis of the
described kidney injury markers. The kit comprises ts for the is of at least
one test sample which se at least one antibody that a kidney injury marker. The kit
can also include devices and instructions for performing one or more of the diagnostic
and/or prognostic correlations described herein. Preferred kits will comprise an antibody
pair for performing a ch assay, or a labeled species for performing a competitive
assay, for the analyte. Preferably, an antibody pair comprises a first antibody conjugated
to a solid phase and a second antibody conjugated to a detectable label, n each of
the first and second antibodies that bind a kidney injury marker. Most preferably each of
the antibodies are monoclonal antibodies. The instructions for use of the kit and
performing the ations can be in the form of labeling, which refers to any written or
recorded material that is attached to, or otherwise accompanies a kit at any time during its
manufacture, transport, sale or use. For example, the term labeling encompasses
advertising leaflets and brochures, packaging materials, instructions, audio or video
cassettes, computer discs, as well as writing imprinted directly on kits.
Antibodies
The term “antibody” as used herein refers to a peptide or polypeptide derived
from, modeled after or substantially encoded by an immunoglobulin gene or
immunoglobulin genes, or fragments thereof, capable of specifically binding an antigen
or epitope. See, e. g. Fundamental Immunology, 3rd Edition, W.E. Paul, ed., Raven Press,
NY. (1993); Wilson (1994; J. Immunol. Methods 175:267-273; Yarmush (1992) J.
Biochem. Biophys. s 25:85-97. The term dy includes n-binding
portions, i.e., "antigen binding sites," (e. g., fragments, subsequences, complementarity
determining s (CDRs)) that retain capacity to bind antigen, ing (i) a Fab
fragment, a monovalent fragment consisting of the VL, VH, CL and CH1 domains; (ii) a
2 fragment, a bivalent fragment comprising two Fab nts linked by a disulfide
bridge at the hinge ; (iii) a Fd fragment consisting of the VH and CH1 domains; (iv)
a Fv fragment consisting of the VL and VH domains of a single arm of an antibody, (v) a
dAb fragment (Ward et al., (1989) Nature 341:544-546), which consists of a VH domain;
and (vi) an isolated complementarity determining region (CDR). Single chain antibodies
are also included by reference in the term "antibody."
2012/066152
Antibodies used in the immunoassays described herein preferably ically
bind to a kidney injury marker of the present invention. The term “specifically binds” is
not intended to indicate that an antibody binds exclusively to its ed target since, as
noted above, an antibody binds to any polypeptide displaying the epitope(s) to which the
antibody binds. Rather, an antibody “specifically binds” if its affinity for its intended
target is about 5-fold greater when compared to its affinity for a non-target le
which does not display the appropriate epitope(s). ably the affinity of the antibody
will be at least about 5 fold, preferably 10 fold, more preferably 25-fold, even more
preferably 50-fold, and most preferably 100-fold or more, greater for a target molecule
than its affinity for a non-target molecule. In preferred embodiments, Preferred antibodies
bind with affinities of at least about 107 M'l, and preferably between about 108 M"1 to
about 109 M'l, about 109 M'1 to about 1010 M'l, or about 1010 M'1 to about 1012 M'1 .
Affinity is calculated as Kd = on (koff is the dissociation rate constant, Kon
is the association rate constant and Kd is the equilibrium constant). ty can be
ined at equilibrium by measuring the fraction bound (r) of labeled ligand at various
concentrations (c). The data are graphed using the Scatchard equation: r/c = K(n-r): where
r = moles of bound ligand/mole of receptor at equilibrium; c = free ligand concentration
at equilibrium; K = equilibrium association constant; and n = number of ligand binding
sites per or molecule. By graphical analysis, r/c is plotted on the Y-aXis versus r on
the X-axis, thus producing a Scatchard plot. Antibody affinity measurement by ard
analysis is well known in the art. See, e. g., van Erp et al., J. Immunoassay 12: 425-43,
1991; Nelson and Griswold, Comput. Methods Programs Biomed. 27: 65-8, 1988.
The term “epitope” refers to an antigenic determinant capable of specific
binding to an antibody. Epitopes usually consist of chemically active e groupings of
molecules such as amino acids or sugar side chains and usually have specific three
dimensional structural characteristics, as well as specific charge characteristics.
Conformational and nonconformational es are distinguished in that the binding to
the former but not the latter is lost in the presence of denaturing solvents.
Numerous publications discuss the use of phage display technology to produce
and screen libraries of polypeptides for binding to a selected analyte. See, e. g, Cwirla et
al., Proc. Natl. Acad. Sci. USA 87, 6378-82, 1990; Devlin et al., Science 249, 404-6,
1990, Scott and Smith, Science 249, 386-88, 1990; and Ladner et al., U.S. Pat. No.
698. A basic concept of phage display methods is the ishment of a physical
association between DNA encoding a polypeptide to be screened and the polypeptide.
This al association is provided by the phage particle, which displays a polypeptide
as part of a capsid ing the phage genome which encodes the polypeptide. The
establishment of a physical association between polypeptides and their c material
allows simultaneous mass screening of very large numbers of phage bearing different
polypeptides. Phage displaying a polypeptide with affinity to a target bind to the target
and these phage are enriched by affinity screening to the target. The identity of
polypeptides displayed from these phage can be determined from their respective
s. Using these methods a polypeptide identified as having a binding affinity for a
d target can then be synthesized in bulk by conventional means. See, e. g., U.S.
Patent No. 6,057,098, which is hereby incorporated in its entirety, including all tables,
figures, and claims.
The antibodies that are ted by these methods may then be selected by
first screening for affinity and specificity with the purified polypeptide of interest and, if
required, comparing the results to the ty and specificity of the antibodies with
polypeptides that are desired to be excluded from binding. The screening procedure can
involve immobilization of the ed polypeptides in te wells of microtiter plates.
The solution containing a potential antibody or groups of antibodies is then placed into
the respective microtiter wells and incubated for about 30 min to 2 h. The microtiter wells
are then washed and a labeled secondary antibody (for example, an anti-mouse antibody
ated to alkaline phosphatase if the raised dies are mouse antibodies) is added
to the wells and ted for about 30 min and then washed. Substrate is added to the
wells and a color reaction will appear where dy to the immobilized polypeptide(s)
are present.
The antibodies so identified may then be further analyzed for affinity and
specificity in the assay design selected. In the development of immunoassays for a target
protein, the purified target protein acts as a standard with which to judge the sensitivity
and specificity of the immunoassay using the antibodies that have been selected. Because
the binding affinity of various antibodies may differ; certain dy pairs (e. g., in
sandwich assays) may interfere with one another sterically, etc., assay performance of an
antibody may be a more important measure than absolute affinity and icity of an
antibody.
While the t application bes antibody-based binding assays in
detail, alternatives to antibodies as binding species in assays are well known in the art.
These include receptors for a particular , rs, etc. rs are oligonucleic
acid or peptide molecules that bind to a specific target molecule. rs are usually
created by selecting them from a large random sequence pool, but natural aptamers also
exist. High-affinity aptamers containing modified nucleotides conferring improved
characteristics on the ligand, such as improved in vivo stability or improved delivery
characteristics. es of such modifications include chemical substitutions at the
ribose and/or phosphate and/or base positions, and may include amino acid side chain
functionalities.
Assay Correlations
The term lating” as used herein in reference to the use of biomarkers
refers to ing the presence or amount of the ker(s) in a patient to its presence
or amount in persons known to suffer from, or known to be at risk of, a given condition;
or in persons known to be free of a given condition. Often, this takes the form of
comparing an assay result in the form of a biomarker concentration to a predetermined
threshold selected to be indicative of the occurrence or nonoccurrence of a disease or the
hood of some future outcome.
Selecting a diagnostic threshold involves, among other things, consideration of
the probability of disease, distribution of true and false diagnoses at different test
thresholds, and estimates of the consequences of treatment (or a failure to treat) based on
the diagnosis. For example, when considering administering a specific therapy which is
highly cious and has a low level of risk, few tests are needed because clinicians can
accept substantial diagnostic uncertainty. On the other hand, in situations where treatment
options are less effective and more risky, clinicians often need a higher degree of
diagnostic certainty. Thus, cost/benefit analysis is involved in selecting a diagnostic
threshold.
Suitable thresholds may be determined in a variety of ways. For example, one
ended diagnostic threshold for the diagnosis of acute myocardial infarction using
cardiac troponin is the 97.5th percentile of the concentration seen in a normal population.
Another method may be to look at serial samples from the same patient, where a prior
“baseline” result is used to monitor for temporal changes in a biomarker level.
] Population studies may also be used to select a decision threshold. Reciever
Operating Characteristic (“ROC”) arose from the field of signal dectection therory
developed during World War II for the analysis of radar images, and ROC analysis is
often used to select a threshold able to best distinguish a “diseased” subpopulation from a
“nondiseased” subpopulation. A false positive in this case occurs when the person tests
positive, but actually does not have the disease. A false negative, on the other hand,
occurs when the person tests ve, suggesting they are healthy, when they actually do
have the disease. To draw a ROC curve, the true positive rate (TPR) and false positive
rate (FPR) are determined as the decision threshold is varied continuously. Since TPR is
equivalent with ivity and FPR is equal to 1 - specificity, the ROC graph is
sometimes called the sensitivity vs (1 - specificity) plot. A perfect test will have an area
under the ROC curve of 1.0; a random test will have an area of 0.5. A threshold is
selected to provide an acceptable level of specificity and sensitivity.
In this context, “diseased” is meant to refer to a tion having one
characteristic (the presence of a disease or condition or the occurrence of some outcome)
and “nondiseased” is meant to refer to a population lacking the characteristic. While a
single decision threshold is the simplest application of such a method, le decision
thresholds may be used. For example, below a first threshold, the absence of e may
be assigned with relatively high confidence, and above a second threshold the presence of
e may also be assigned with relatively high confidence. Between the two thresholds
may be considered rminate. This is meant to be exemplary in nature only.
] In addition to threshold isons, other methods for correlating assay
results to a patient classification (occurrence or nonoccurrence of disease, likelihood of an
outcome, etc.) e decision trees, rule sets, Bayesian methods, and neural network
methods. These methods can produce probability values representing the degree to which
a subject belongs to one classification out of a plurality of classifications.
es of test accuracy may be obtained as described in Fischer et 61].,
Intensive Care Med. 29: 1043-51, 2003, and used to determine the effectiveness of a
given biomarker. These measures e ivity and specificity, predictive values,
likelihood ratios, diagnostic odds ratios, and ROC curve areas. The area under the curve
(“AUC”) of a ROC plot is equal to the ility that a classifier will rank a randomly
chosen positive instance higher than a randomly chosen negative one. The area under the
ROC curve may be thought of as equivalent to the Mann-Whitney U test, which tests for
the median difference between scores obtained in the two groups considered if the groups
are of continuous data, or to the Wilcoxon test of ranks.
As sed above, suitable tests may exhibit one or more of the following
results on these s measures: a specificity of r than 0.5, preferably at least 0.6,
more preferably at least 0.7, still more preferably at least 0.8, even more preferably at
least 0.9 and most preferably at least 0.95, with a corresponding sensitivity greater than
02, preferably greater than 0.3, more preferably greater than 0.4, still more preferably at
least 0.5, even more preferably 0.6, yet more preferably greater than 0.7, still more
preferably r than 0.8, more preferably greater than 0.9, and most preferably greater
than 0.95; a sensitivity of greater than 0.5, preferably at least 0.6, more preferably at least
0.7, still more preferably at least 0.8, even more preferably at least 0.9 and most
preferably at least 0.95, with a corresponding specificity greater than 02, preferably
r than 0.3, more preferably greater than 0.4, still more preferably at least 0.5, even
more preferably 0.6, yet more preferably greater than 0.7, still more preferably greater
than 0.8, more preferably greater than 0.9, and most preferably greater than 0.95; at least
75% sensitivity, combined with at least 75% specificity; a ROC curve area of r than
0.5, preferably at least 0.6, more preferably 0.7, still more preferably at least 0.8, even
more ably at least 0.9, and most ably at least 0.95; an odds ratio different from
1, preferably at least about 2 or more or about 0.5 or less, more preferably at least about 3
or more or about 0.33 or less, still more preferably at least about 4 or more or about 0.25
or less, even more preferably at least about 5 or more or about 0.2 or less, and most
preferably at least about 10 or more or about 0.1 or less; a positive likelihood ratio
(calculated as sensitivity/(1-specificity)) of r than 1, at least 2, more preferably at
least 3, still more preferably at least 5, and most preferably at least 10; and or a negative
likelihood ratio (calculated as (1-sensitivity)/specificity) of less than 1, less than or equal
to 0.5, more preferably less than or equal to 0.3, and most preferably less than or equal to
Additional clinical indicia may be combined with the kidney injury marker
assay result(s) of the present invention. These include other biomarkers related to renal
status. Examples include the following, which recite the common biomarker name,
followed by the Swiss-Prot entry number for that biomarker or its parent: Actin (P68133);
Adenosine deaminase binding protein (DPP4, P27487); l-acid glycoprotein 1
3); Alpha-l-microglobulin (P02760); Albumin 8); Angiotensinogenase
(Renin, P00797); AnneXin A2 (P07355); Beta-glucuronidase (P08236); B
microglobulin 9); Beta-galactosidase (P16278); BMP-7 (P18075); Brain
natriuretic peptide (proBNP, BNP-32, NTproBNP; P16860); Calcium-binding protein
Beta (S100-beta, P04271); Carbonic anhydrase (Ql6790); Casein Kinase 2 (P68400);
Ceruloplasmin (P00450); Clusterin (P10909); Complement C3 (P01024); Cysteine-rich
protein (CYR61, 000622); Cytochrome C (P99999); Epidermal growth factor (EGF,
P01133); Endothelin-l 5); Exosomal -A (P02765); Fatty acid-binding
protein, heart (FABP3, ); Fatty acid-binding protein, liver (P07148); Ferritin (light
chain, P02793; heavy chain P02794); Fructose-1,6-biphosphatase (P09467); GRO-alpha
(CXCLl, (P09341); Growth e (P01241); Hepatocyte growth factor (P14210);
Insulin-like growth factor I 3); Immunoglobulin G; Immunoglobulin Light Chains
(Kappa and Lambda); eron gamma (P01308); Lysozyme (P61626); eukin-
1alpha (P01583); Interleukin-2 (P60568); Interleukin-4 (P60568); Interleukin-9 (P15248);
Interleukin-12p40 (P29460); Interleukin-13 (P35225); Interleukin-16 (Ql4005); L1 cell
adhesion molecule (P32004); Lactate ogenase (P00338); Leucine Aminopeptidase
(P28838); Meprin A-alpha t (Ql6819); Meprin A-beta subunit (Ql6820); Midkine
(P21741); MIP2-alpha (CXCL2, Pl9875); MMP-2 (P08253); MMP-9 (P14780); Netrin-l
(095631); Neutral endopeptidase (P08473); 0steopontin (P10451); Renal papillary
antigen 1 ; Renal papillary antigen 2 (RPA2); Retinol binding protein (P09455);
Ribonuclease; S100 calcium-binding protein A6 (P06703); Serum Amyloid P Component
(P02743); Sodium/Hydrogen exchanger isoform (NHE3, P48764); Spermidine/spermine
Nl-acetyltransferase (P21673); TGF-Betal (P01137); Transferrin (P02787); Trefoil
factor 3 (TFF3, 007654); Toll-Like protein 4 (000206); Total n; Tubulointerstitial
nephritis n 2); Uromodulin (Tamm-Horsfall protein, P07911).
For purposes of risk stratification, Adiponectin (Ql5848); Alkaline
atase (P05186); Aminopeptidase N (P15144); CalbindinD28k (P05937); Cystatin
C (P01034); 8 t of F1F0 ATPase (P03928); Gamma-glutamyltransferase (P19440);
GSTa (alpha-glutathione-S-transferase, P08263); GSTpi (Glutathione-S-transferase P;
GST class-pi; P09211); IGFBP-l (P08833); IGFBP-2 (P18065); IGFBP-6 (P24592);
Integral membrane protein 1 (Itml, P46977); Interleukin-6 (P05231); Interleukin-8
(P10145); Interleukin-18 (Ql4116); IP-10 (10 kDa interferon-gamma-induced n,
P02778); IRPR , 000458); Isovaleryl-CoA dehydrogenase (IVD, P26440); I-
TAC/CXCLll (014625); Keratin 19 7); Kim-1 (Hepatitis A Virus cellular
receptor 1, 043656); L-arginine:glycine otransferase (P50440); Leptin (P41159);
Lipocalin2 (NGAL, P80188); MCP-l 0); MIG (Gamma-interferon-induced
monokine 007325); MIP-la (P10147); MIP-3a (P78556); MIP-lbeta (P13236); MIP-ld
(Ql6663); NAG (N-acetyl-beta-D-glucosaminidase, P54802); Organic ion transporter
(0CT2, ); 0steoprotegerin (014788); P8 protein (060356); Plasminogen
activator inhibitor 1 (PAI-l, ); ProANP(1-98) (P01160); Protein phosphatase 1-
beta (PPI-beta, P62140); Rab GDI-beta (P50395); Renal rein (QS6U61 ); RT1.B-1
(alpha) chain of the integral membrane protein (Q5Y7A8); Soluble tumor necrosis factor
receptor superfamily member 1A (sTNFR-I, P19438); Soluble tumor necrosis factor
or superfamily member 1B (sTNFR-II, ); Tissue inhibitor of
metalloproteinases 3 3, P35625); uPAR (003405) may be combined with the
kidney injury marker assay result(s) of the present invention.
Other clinical indicia which may be combined with the kidney injury marker
assay (s) of the present invention includes demographic information (e.g., weight,
sex, age, race), medical history (e.g., family y, type of surgery, pre-existing disease
such as aneurism, congestive heart failure, preeclampsia, eclampsia, diabetes mellitus,
hypertension, coronary artery disease, proteinuria, renal insufficiency, or sepsis, type of
toxin exposure such as NSAIDs, cyclosporines, tacrolimus, aminoglycosides, foscamet,
ethylene glycol, hemoglobin, myoglobin, ifosfamide, heavy metals, methotrexate,
aque contrast agents, or streptozotocin), clinical variables (e. g., blood pressure,
temperature, ation rate), risk scores (APACHE score, PREDICT score, TIMI Risk
Score for UA/NSTEMI, Framingham Risk Score), a urine total n measurement, a
glomerular filtration rate, an estimated glomerular filtration rate, a urine production rate, a
serum or plasma creatinine concentration, a renal ary antigen 1 (RPAl)
measurement; a renal papillary antigen 2 (RPA2) measurement; a urine creatinine
concentration, a fractional excretion of sodium, a urine sodium concentration, a urine
creatinine to serum or plasma creatinine ratio, a urine specific gravity, a urine osmolality,
a urine urea nitrogen to plasma urea nitrogen ratio, a plasma BUN to creatnine ratio,
and/or a renal failure index calculated as urine sodium / (urine creatinine / plasma
creatinine). Other measures of renal function which may be combined with the kidney
injury marker assay result(s) are described hereinafter and in Harrison’s Principles of
Internal ne, 17Lh Ed., McGraw Hill, New York, pages 1741-1830, and Current
2012/066152
Medical Diagnosis & Treatment 2008, 47Lh Ed, McGraw Hill, New York, pages 785-815,
each of which are hereby incorporated by nce in their entirety.
Combining assay results/clinical a in this manner can comprise the use
of multivariate ical regression, loglinear modeling, neural network analysis, n-of-m
analysis, decision tree analysis, etc. This list is not meant to be limiting.
Diagnosis of Acute Renal Failure
As noted above, the terms “acute renal (or ) injury” and “acute renal (or
kidney) failure” as used herein are defined in part in terms of changes in serum creatinine
from a baseline value. Most definitions of ARF have common elements, including the use
of serum creatinine and, often, urine output. Patients may present with renal dysfunction
without an available baseline measure of renal function for use in this comparison. In
such an event, one may estimate a baseline serum creatinine value by ng the
patient initially had a normal GFR. Glomerular filtration rate (GFR) is the volume of fluid
filtered from the renal (kidney) glomerular capillaries into the 's capsule per unit
time. Glomerular filtration rate (GFR) can be calculated by measuring any chemical that
has a steady level in the blood, and is freely filtered but neither reabsorbed nor secreted
by the kidneys. GFR is typically expressed in units of ml/min:
Urine Uonctznfirution >< e Flow
rFR :—«a
Plasnm Concentration
By normalizing the GFR to the body e area, a GFR of approximately
75—100 ml/min per 1.73 m2 can be assumed. The rate therefore measured is the quantity
of the substance in the urine that originated from a calculable volume of blood.
There are several different techniques used to calculate or te the
ular filtration rate (GFR or eGFR). In clinical practice, however, creatinine
clearance is used to measure GFR. Creatinine is produced naturally by the body
inine is a metabolite of creatine, which is found in muscle). It is freely filtered by
the glomerulus, but also ly secreted by the renal tubules in very small amounts such
that creatinine clearance overestimates actual GFR by 10-20%. This margin of error is
acceptable considering the ease with which creatinine clearance is measured.
Creatinine clearance (CCr) can be calculated if values for creatinine's urine
concentration (UCr), urine flow rate (V), and creatinine's plasma concentration (Pct) are
known. Since the product of urine concentration and urine flow rate yields nine's
ion rate, nine clearance is also said to be its excretion rate (UCrxV) divided by
its plasma concentration. This is commonly represented mathematically as:
Commonly a 24 hour urine collection is aken, from empty-bladder one morning to
the contents of the bladder the following morning, with a comparative blood test then
taken:
{55, X 24— hour volume
{'3‘hath:
l}. 5 _.
N; 34 x filj‘?fl.fifl§_. _ \ H g ‘
To allow comparison of results between people of different sizes, the CCr is often
corrected for the body surface area (BSA) and expressed compared to the average sized
man as ml/min/1.73 m2. While most adults have a BSA that approaches 1.7 (1.6-1.9),
extremely obese or slim patients should have their CCr ted for their actual BSA:
(ff-,ZT'E‘M‘{TI31‘3"$",‘3?¥3E‘$31L$
[01 l l] The accuracy of a creatinine nce measurement (even when collection is
te) is limited because as glomerular filtration rate (GFR) falls creatinine secretion
is increased, and thus the rise in serum creatinine is less. Thus, creatinine excretion is
much greater than the filtered load, resulting in a potentially large overestimation of the
GFR (as much as a twofold difference). However, for clinical purposes it is important to
determine whether renal function is stable or getting worse or better. This is often
determined by monitoring serum creatinine alone. Like creatinine clearance, the serum
creatinine will not be an accurate reflection of GFR in the non-steady-state condition of
ARF. Nonetheless, the degree to which serum creatinine changes from baseline will
reflect the change in GFR. Serum creatinine is readily and easily measured and it is
specific for renal function.
For purposes of determining urine output on a Urine output on a mL/kg/hr
basis, hourly urine collection and measurement is adequate. In the case where, for
example, only a cumulative 24-h output was available and no patient weights are
ed, minor modifications of the RIFLE urine output ia have been described.
For e, Bagshaw et al., Nephrol. Dial. Transplant. 23: 1203–1210, 2008,
assumes an average patient weight of 70 kg, and patients are assigned a RIFLE
classification based on the ing: <35 mL/h , <21 mL/h (Injury) or <4 mL/h
(Failure).
Selecting a Treatment Regimen
Once a diagnosis is obtained, the clinician can readily select a treatment
regimen that is compatible with the diagnosis, such as initiating renal replacement
therapy, withdrawing delivery of compounds that are known to be damaging to the
kidney, kidney transplantation, ng or avoiding procedures that are known to be
damaging to the , ing ic administration, initiating goal directed
therapy, etc. The skilled artisan is aware of appropriate treatments for numerous
diseases discussed in relation to the methods of diagnosis described herein. See, e.g.,
Merck Manual of Diagnosis and Therapy, 17th Ed. Merck Research Laboratories,
Whitehouse Station, NJ, 1999. In addition, since the methods and compositions
described herein provide prognostic information, the markers of the present invention
may be used to monitor a course of treatment. For example, improved or worsened
prognostic state may indicate that a particular treatment is or is not efficacious.
The examples provided herein are representative of preferred embodiments,
are exemplary, and are not intended as limitations on the scope of the invention.
Example 1: Contrast-induced nephropathy sample collection
The objective of this sample tion study is to collect samples of plasma
and urine and clinical data from patients before and after receiving ascular
contrast media. Approximately 250 adults undergoing radiographic/angiographic
procedures involving intravascular administration of ted contrast media are
enrolled. To be enrolled in the study, each patient must meet all of the following
inclusion criteria and none of the following exclusion criteria:
ion Criteria
males and females 18 years of age or older;
undergoing a radiographic / angiographic ure (such as a CT scan or coronary
intervention) involving the intravascular administration of st media;
expected to be alized for at least 48 hours after contrast administration.
able and willing to provide written informed consent for study participation and to
comply with all study procedures.
Exclusion Criteria
renal transplant recipients;
acutely worsening renal function prior to the contrast procedure;
already receiving dialysis (either acute or chronic) or in nt need of dialysis at
enrollment;
expected to o a major surgical procedure (such as involving cardiopulmonary
bypass) or an additional imaging procedure with contrast media with significant risk for
further renal insult within the 48 hrs ing contrast administration;
participation in an interventional clinical study with an experimental therapy within the
previous 30 days;
known ion with human immunodeficiency virus (HIV) or a hepatitis virus.
Immediately prior to the first contrast administration (and after any pre-
procedure ion), an EDTA anti-coagulated blood sample (10 mL) and a urine
sample (10 mL) are collected from each patient. Blood and urine samples are then
collected at 4 (i0.5), 8 (i1), 24 (i2) 48 (i2), and 72 (i2) hrs following the last
administration of contrast media during the index contrast procedure. Blood is collected
via direct venipuncture or via other available venous access, such as an existing femoral
, central venous line, peripheral intravenous line or hep-lock. These study blood
samples are processed to plasma at the clinical site, frozen and shipped to Astute Medical,
Inc., San Diego, CA. The study urine samples are frozen and d to Astute Medical,
Inc.
Serum creatinine is assessed at the site immediately prior to the first contrast
administration (after any pre-procedure hydration) and at 4 (i0.5), 8 (i1), 24 (i2) and 48
(i2) ), and 72 (i2) hours following the last administration of contrast (ideally at the same
time as the study s are obtained). In addition, each patient’s status is evaluated
through day 30 with regard to additional serum and urine creatinine measurements, a need
for dialysis, hospitalization status, and adverse clinical outcomes (including mortality).
Prior to contrast administration, each patient is assigned a risk based on the
following assessment: ic blood pressure <80 mm Hg = 5 points; intra-arterial
balloon pump = 5 points; congestive heart failure (Class III-IV or history of pulmonary
edema) = 5 points; age >75 yrs = 4 points; hematocrit level <39% for men, <35% for
women = 3 points; diabetes = 3 points; contrast media volume = 1 point for each 100 mL;
serum creatinine level >1.5 g/dL = 4 points OR estimated GFR 40—60 mL/min/ 1.73 m2 =
2 points, 20—40 /1.73 m2 = 4 points, < 20 mL/min/1.73 m2 = 6 points. The risks
ed are as follows: risk for CIN and is: 5 or less total points = risk of CIN -
7.5%, risk of dialysis - 0.04%; 6—10 total points = risk of CIN - 14%, risk of dialysis -
0.12%; 11—16 total points = risk of CIN - 26.1%, risk of dialysis - 1.09%; >16 total points
= risk of CIN - 57.3%, risk of is - 12.8%.
Example 2: Cardiac surgery sample tion
The objective of this sample collection study is to collect samples of plasma
and urine and clinical data from patients before and after undergoing cardiovascular
surgery, a procedure known to be potentially damaging to kidney function.
Approximately 900 adults undergoing such surgery are enrolled. To be enrolled in the
study, each patient must meet all of the ing inclusion criteria and none of the
following ion criteria:
Inclusion ia
males and females 18 years of age or older;
undergoing cardiovascular surgery;
o/Ottawa Predictive Risk Index for Renal Replacement risk score of at least 2
(Wijeysundera et al., JAMA 297: 1801-9, 2007); and
able and willing to provide written informed consent for study participation and to
comply with all study procedures.
Exclusion Criteria
known pregnancy;
previous renal transplantation;
acutely worsening renal on prior to enrollment (e. g., any category of
RIFLE criteria);
already receiving dialysis (either acute or chronic) or in imminent need of dialysis at
enrollment;
currently enrolled in another clinical study or expected to be enrolled in another clinical
study within 7 days of cardiac surgery that involves drug infusion or a therapeutic
intervention for AKI;
known infection with human immunodeficiency virus (HIV) or a hepatitis virus.
Within 3 hours prior to the first incision (and after any pre-procedure
hydration), an EDTA anti-coagulated blood sample (10 mL), whole blood (3 mL), and a
urine sample (35 mL) are collected from each patient. Blood and urine samples are then
collected at 3 (i0.5), 6 (i0.5), 12 (i1), 24 (i2) and 48 (i2) hrs following the procedure
and then daily on days 3 through 7 if the subject remains in the hospital. Blood is
collected via direct ncture or via other available venous access, such as an existing
femoral sheath, central venous line, peripheral intravenous line or hep-lock. These study
blood samples are frozen and shipped to Astute Medical, Inc., San Diego, CA. The study
urine samples are frozen and d to Astute Medical, Inc.
Example 3: Acutely ill subject sample collection
The objective of this study is to collect samples from y ill ts.
Approximately 1900 adults ed to be in the ICU for at least 48 hours will be
enrolled. To be enrolled in the study, each patient must meet all of the following inclusion
criteria and none of the ing ion criteria:
Inclusion Criteria
males and females 18 years of age or older;
Study population 1: approximately 300 patients that have at least one of:
shock (SBP < 90 mmHg and/or need for vasopressor support to maintain MAP > 60
mmHg and/or documented drop in SBP of at least 40 mmHg); and
sepsis;
Study tion 2: approximately 300 patients that have at least one of:
IV otics ordered in computerized physician order entry (CPOE) within 24 hours of
ment;
contrast media exposure within 24 hours of enrollment;
increased Intra-Abdominal Pressure with acute decompensated heart failure; and
severe trauma as the primary reason for ICU admission and likely to be hospitalized in
the ICU for 48 hours after enrollment;
Study tion 3: approximately 300 patients expected to be hospitalized through acute
care setting (ICU or ED) with a known risk factor for acute renal injury (e. g. sepsis,
hypotension/shock (Shock = systolic BP < 90 mmHg and/or the need for vasopressor
support to maintain a MAP > 60 mmHg and/or a documented drop in SBP > 40 mmHg),
major trauma, hemorrhage, or major surgery); and/or ed to be hospitalized to the
ICU for at least 24 hours after enrollment;
Study tion 4: approximately 1000 patients that are 21 years of age or older, within
24 hours of being admitted into the ICU, expected to have an indwelling urinary catheter
for at least 48 hours after enrollment, and have at least one of the following acute
conditions within 24 hours prior to enrollment:
(i) respiratory SOFA score of 2 2 (PaO2/FiO2 <300), (ii) cardiovascular SOFA score of 2
1 (MAP < 70 mm Hg and/or any vasopressor required).
ion Criteria
known pregnancy;
institutionalized individuals;
previous renal lantation;
known acutely worsening renal function prior to enrollment (e.g., any category of RIFLE
criteria);
received dialysis (either acute or chronic) within 5 days prior to ment or in
imminent need of dialysis at the time of enrollment;
known infection with human immunodeficiency virus (HIV) or a hepatitis virus;
meets any of the following:
(i) active bleeding with an anticipated need for > 4 units PRBC in a day;
(ii) obin < 7 g/dL;
(iii) any other condition that in the ian’s opinion would contraindicate
drawing serial blood s for clinical study purposes;
meets only the SBP < 90 mmHg inclusion criterion set forth above, and does not have
shock in the attending physician’s or principal investigator’s opinion;
After obtaining informed consent, an EDTA anti-coagulated blood sample (10
mL) and a urine sample (25-50 mL) are collected from each patient. Blood and urine
samples are then collected at 4 (i 0.5) and 8 (i 1) hours after contrast administration (if
applicable); at 12 (i 1), 24 (i 2), 36 (i 2), 48 (i 2), 60 (i 2), 72 (i 2), and 84 (i 2) hours
after enrollment, and thereafter daily up to day 7 to day 14 while the subject is
hospitalized. Blood is collected via direct ncture or via other available venous
access, such as an existing femoral sheath, central venous line, peripheral intravenous line
or hep-lock. These study blood samples are processed to plasma at the al site, frozen
and shipped to Astute Medical, Inc., San Diego, CA. The study urine samples are frozen
and shipped to Astute Medical, Inc.
e 4. Immunoassay format
Analytes are measured using standard sandwich enzyme immunoassay
techniques. A first antibody which binds the analyte is immobilized in wells of a 96 well
polystyrene microplate. Analyte standards and test samples are pipetted into the
appropriate wells and any analyte present is bound by the immobilized antibody. After
washing away any unbound substances, a horseradish dase-conjugated second
antibody which binds the analyte is added to the wells, thereby forming sandwich
complexes with the analyte (if present) and the first antibody. ing a wash to
remove any unbound antibody-enzyme reagent, a substrate solution sing
tetramethylbenzidine and hydrogen peroxide is added to the wells. Color develops in
proportion to the amount of analyte t in the sample. The color development is
stopped and the intensity of the color is measured at 540 nm or 570 nm. An analyte
concentration is assigned to the test sample by comparison to a standard curve determined
from the analyte standards.
Units for the concentrations reported in the following data tables are as
follows: nocalcin-l - ng/mL, Antithrombin-III - ng/mL, Toll-like receptor 2 -
ng/mL, Triiodothyronine (T3) - ng/mL, Thyroxine (T4) - ng/mL, Extracellular matrix
2012/066152
protein 1 - ng/mL, ation factor XIII A chain/Coagulation factor XIII B chain -
ng/mL (assay detects both chains), Interleukin-17F - ng/mL, Interleukin-22 - ng/mL,
Vitronectin - ng/mL, Progesterone - ng/mL, Estradiol - ng/mL, Growth/differentiation
factor 15 - pg/mL, Proprotein convertase subtilisin/kexin type 9.
In the case of those kidney injury markers which are membrane proteins as
described herein, the assays used in these examples detect soluble forms thereof.
Example 5. Apparently Healthy Donor and Chronic Disease Patient
Sal—mm
Human urine samples from donors with no known chronic or acute disease
(“Apparently Healthy Donors”) were purchased from two vendors n West
Biologicals, Inc., 27625 Commerce Center Dr., Temecula, CA 92590 and Virginia
Medical Research, Inc., 915 First al Rd., Virginia Beach, VA 23454). The urine
samples were d and stored frozen at less than -200 C. The vendors ed
demographic information for the individual donors including gender, race (Black /White),
smoking status and age.
Human urine samples from donors with various chronic diseases (“Chronic
Disease Patients”) ing tive heart failure, coronary artery disease, chronic
kidney disease, chronic obstructive pulmonary disease, diabetes mellitus and
hypertension were purchased from Virginia l Research, Inc., 915 First Colonial
Rd., Virginia Beach, VA 23454. The urine samples were d and stored frozen at less
than -20 degrees centigrade. The vendor provided a case report form for each individual
donor with age, gender, race (Black/White), smoking status and alcohol use, height,
weight, chronic disease(s) diagnosis, current medications and previous surgeries.
Example 6. Use of Kidney Injury Markers for evaluating renal status in
patients
Patients from the intensive care unit (ICU) were enrolled in the following
study. Each patient was classified by kidney status as non-injury (0), risk of injury (R),
injury (I), and failure (F) according to the maximum stage d within 7 days of
ment as determined by the RIFLE criteria. EDTA anti-coagulated blood samples
(10 mL) and a urine samples (25-30 mL) were collected from each patient at ment,
4 (i 0.5) and 8 (i 1) hours after contrast administration (if applicable); at 12 (i 1), 24 (i
2), and 48 (i 2) hours after enrollment, and thereafter daily up to day 7 to day 14 while
the subject is hospitalized. Markers were each measured by standard immunoassay
methods using cially ble assay reagents in the urine samples and the plasma
component of the blood samples collected.
Two s were defined to represent a “diseased” and a “normal”
population. While these terms are used for convenience, “diseased” and “normal” simply
represent two cohorts for comparison (say RIFLE 0 vs RIFLE R, I and F; RIFLE 0 vs
RIFLE R; RIFLE 0 and R vs RIFLE I and F; etc.). The time “prior max stage” represents
the time at which a sample is collected, relative to the time a particular patient reaches the
lowest disease stage as defined for that cohort, binned into three groups which are +/- 12
hours. For example, “24 hr prior” which uses 0 vs R, I, F as the two s would mean
24 hr (+/— 12 hours) prior to reaching stage R (or I if no sample at R, or F if no sample at
R or I).
A receiver operating characteristic (ROC) curve was generated for each
biomarker measured and the area under each ROC curve (AUC) is determined. ts in
Cohort 2 were also ted according to the reason for adjudication to cohort 2 as being
based on serum creatinine measurements (sCr), being based on urine output (UO), or
being based on either serum creatinine measurements or urine output. Using the same
example sed above (0 vs R, I, F), for those patients adjudicated to stage R, I, or F
on the basis of serum creatinine measurements alone, the stage 0 cohort may include
patients adjudicated to stage R, I, or F on the basis of urine ; for those patients
adjudicated to stage R, I, or F on the basis of urine output alone, the stage 0 cohort may
include ts adjudicated to stage R, I, or F on the basis of serum creatinine
measurements; and for those patients adjudicated to stage R, I, or F on the basis of serum
creatinine measurements or urine output, the stage 0 cohort contains only patients in stage
0 for both serum creatinine measurements and urine output. Also, in the data for patients
adjudicated on the basis of serum creatinine measurements or urine output, the
adjudication method which yielded the most severe RIFLE stage is used.
The ability to distinguish cohort 1 from Cohort 2 was determined using ROC
analysis. SE is the standard error of the AUC, n is the number of sample or individual
patients (“pts,” as indicated). rd errors are calculated as described in Hanley, J. A.,
and McNeil, B.J., The meaning and use of the area under a receiver operating
characteristic (ROC) curve. Radiology (1982) 143: 29-36; p values are calculated with a
two-tailed Z-test. An AUC < 0.5 is indicative of a negative going marker for the
comparison, and an AUC > 0.5 is indicative of a positive going marker for the
comparison.
Various threshold (or “cutoff’) concentrations were selected, and the
associated sensitivity and specificity for distinguishing cohort 1 from cohort 2 are
determined. OR is the odds ratio ated for the particular cutoff concentration, and
95% CI is the confidence interval for the odds ratio.
Table 1: Comparison of marker levels in urine samples collected from Cohort 1 (patients
that did not progress beyond RIFLE stage 0) and in urine samples ted from subjects
at 0, 24 hours, and 48 hours prior to reaching stage R, I or F in Cohort 2.
Stanniocalcin- 1
24hr prior to AKl stage 48hr prior to AKl stage
Cohort 2 Cohort 1 Cohort 2
0.131 0.0962 0.218
0.267 0.385 0.297
0.334 0.978 0.241
0.60 0.84
0.0176 0.00189 0.0874
1.25 6.00 0.682
47 5
22 5
t 1sCr only 0hr prior to AKl stage 24hr prior to AKl stage 48hr prior to AKl stage
Cohort 2 Cohort 1 Cohort 2
0.106 0.120 0.160
0.169 0.388 0.169
0.140 0.914 0.133
0.50 0.60
0.0295 0.00189 0.0371
0.410 6.00 0.367
8 98 5
8 47 5
24hr prior to AKl stage 48hr prior to AKl stage
Cohort 2 Cohort 1 Cohort 2
0.131 0.0894 0.156
0.249 0.364 0.196
0.333 0.976 0.213
0.61 0.63
0.0176 0.00189 0.0181
1.25 6.00 0.682
47 8
22 8
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
0.57
0.11
0.0592 0.0760
80% 75%
29% 9%
0.0191
0.0152
100%
0.146
0.307
0.675
OR Quart 2 1.0 0.96 1.5 2.4 >1.1 0.96 0.42
p Value 1.0 0.98 0.68 0.29 <O.96 0.98 0.51
95% CI of 0.17 0.057 0.22 0.48 0.034
OR Quart2 5.8 16 10 12 5.3
OR Quart 3 6.7 2.0 7.9 1.8 1.5
p Value 0.018 0.58 0.022 0.48 0.69
95% CI of 1.4 0.17 1.4 0.35 0.21
OR Quart3 32 24 46 9.2 11
OR Quart 4 2.3 0.96 3.8 2.4 0.92
p Value 0.30 0.98 0.14 0.29 <O.51 0.98 0.94
95% CI of 0.48 0.057 0.64 0.48 >O.19 0.057 0.11
OR Quart4 11 16 23 12 na 16 7.7
Extracellular matrix protein 1
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.736 0.347 0.337
1.10 0.701 0.686
1.12 0.991 0.829
0.0041 0.96
0.000528 0.000528 0.0222
4.80 7.81 2.46
74 212 14
74 106 14
WO 78253
48hr prior to AKI stage
0.000528
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.0075
0.000528 0.000528 0.0222
4.11 7.81 6.57
76 259 16
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.61 0.55 0.61 0.62 0.58 0.62 0.49 0.58 0.51
0.038 0.080 0.081 0.075
0.0012 0.91 0.30 0.86
0.137
0.0928
% 18%
0.0290
0.860
Cutoff5 1.01 1.46 1.15 1.01 1.46 . . . 1.15
Sens 5 39% 27% 37% 39% 28% 38% 29% 36% 25%
Spec 5 80% 80% 80% 80% 80% 80% 80% 80% 80%
Cutoff6 2.04 2.35 2.11 2.04 2.35 2.11 2.04 2.35 2.11
Sens 6 18% 10% 18% 20% 28% 18% 14% 21% 19%
Spec 6 90% 90% 90% 90% 90% 90% 90% 90% 90%
OR Quart 2 1.7 0.82 2.2 0.80 0.48 0.99 0.75 1.5 0.73
p Value 0.13 0.75 0.037 0.63 0.31 0.97 0.72 0.66 0.68
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
95% CI of
OR Quart2
OR Quart 3 .
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value . . .
95% C1 0f 1.9 0.60 1.8 1.4 0.53 1.5 0.24 0.48 0.32
OR Quart4 7.3 4.8 7.6 6.5 4.4 6.7 4.3 13 A .9
Coagulation factor XIII A and chains
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
4.61 2.98 3.06
8.20 6.77 6.87
8.99 10.7 8.40
0.30 0.97
0.000120 0.000303 0.000120 0.000324
84.2 46.4 84.2 29.4
74 212 14
74 106 14
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
7.73 4.00 7.48
.5 7.90 8.65
11.0 12.0 10.00
0.29 0.82
58 0.000120 0.000180
.4 143 30.6
509 14
217 14
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
4.34 3.28 2.58
7.55 6.66 6.87
8.30 10.0 8.26
0.48 0.93
0.000303 0.000120 0.000324
46.4 84.2 22.9
76 259 16
76 117 16
l 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
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sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.57 0.46 0.56 0.58 0.57 0.57 0.54 0.53 0.51
0.075
0.93
1.79 1.58
71% 71% 75%
34% 30% 32%
0.826 0.258 1.39
0.000324 0.435
7.10
Cutoff 5 . 9.23
Sens 5 31% 17% 31% 36% 32% 31%
Spec 5 80% 80% 80% 80% 80% 80%
Cutoff 6 18.0 19.9 17.9 18.0 19.9 17.9
Sens 6 18% 7% 17% 12% 16% 19%
Spec 6 90% 90% 90% 90% 90% 90%
OR Quart 20.77 0.85 0.99 1.2 0.99 . . 2.4
p Value 0.46 0.78 0.97 0.71 0.99 0.35 0.72 0.41 0.21
95% CI Of 0.39 0.28 0.50 0.52 0.28 0.67 0.28 0.088 0.61
OR Quart2 1.5 2.6 1.9 2.6 3.5 9.9
OR Quart 3 1.2 1.3 1.1 1.3 0.59 0.32
p Value 0.66 0.61 0.73 0.54 0.48 0.33
95% CI of 0.60 0.47 0.57 0.58 0.14 0.032
OR Quart3 2.2 3.6 2.2 2.9 2.5 3.1
OR Quart 4 1.5 1.2 1.6 2.4 2.5 1.7
p Value 0.21 0.78 0.16 0.020 0.091 . 0.48
95% CI Of 0.79 0.41 0.84 1.1 0.86 0.94 0.28 0.24 0.39
OR Quart4 2.9 3.3 3.1 5.2 7.4 A .2 6.2 4.1 7.4
Vitronectin
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
33.1 25.1 25.2
80.0 62.1 39.1
152 121 37.5
0.31 0.48
2.95 0.112 4.01
750 750 140
74 212 14
74 106 14
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48hr prior to AKI stage
1 stage 48hr prior to AK1 stage
Cohort 2 Cohort 1 Cohort 2
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.60 0.43 0.65 0.54 0.47 0.54 0.50 0.55 0.44
0.038 0.080 0.080 0.077
0.96 0.50 0.40
.1
8.64
8% 14%
A .35
A 0.3
Cutoff 5 64.6 76.6 59.7 64.6 76.6 . . . 59.7
Sens 5 31% 10% 35% 24% 20% 25% 21% 29% 6%
Spec 5 80% 80% 80% 80% 80% 80% 80% 80% 80%
Cutoff 6 104 169 99.3 104 169 99.3 104 169 99.3
Sens 6 23% 0% 27% 15% 8% 17% 7% 14% 0%
Spec 6 90% 90% 90% 90% 90% 90% 90% 90% 90%
OR Quart 2 1.2 1.2 1.5 0.77 1.2 0.98 0.15 0.66 0.49
p Value 0.64 0.78 0.28 0.52 0.75 0.97 0.089 0.65 0.41
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0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
95% CI of
OR Quart2
OR Quart 3 .
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value . . .
95% C1 0f 1.1 0.69 1.6 0.76 0.61 0.63 0.17 0.50 0.33
OR Quart4 4.1 5.4 6.6 3.2 5.7 2.6 2.5 8.3 5.0
Estradiol
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
9.50 6.48 8.04
.5 9.98 8.04
7.34 16.6 2.54
0.89 0.87
1.18 0.143 6.25
28.3 128 9.84
18 62 2
18 50 2
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
7.90 7.13 14.0
11.2 11.2 14.0
.5 14.8 5.89
0.99 0.79
1.18 0.143 9.84
28.3 128 18.2
101 2
81 2
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
9.28 5.88 6.93
11.9 7.34 7.41
8.70 6.17 3.06
0.017 0.98
1.23 0.143 4.27
34.2 31.6 11.5
19 53 4
19 42 4
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
2012/066152
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.64 0.57 0.69 0.62 0.53 0.70 0.58 0.75 0.58
0.16
0.58
9.74 5.88
100% 100% 75%
45% 64% 51%
.88 9.74 3.62
100%
3.62
100%
7.96
Cutoff 5 . . . . . 9.96
Sens 5 37% 20% 47% 28% 20% 25%
SpecS 81% 80% 81% 81% 80% 81%
Cutoff 6 17.0 24.4 14.2 17.0 24.4 14.2
Sens 6 26% 0% 27% 17% 20% 0%
Spec 6 90% 90% 91% 90% 90% 91%
OR Quart 20.63 0 1.0 2.2 0.96 . . >1.1
p Value 0.63 na 1.0 0.38 0.98 0.63 <0.96 <na <0.96
95% C1 0f 0.093 na 0.12 0.36 0.057 0.23 >0.061 >na >0.061
OR Quart2 4.2 na 8.1 14 16 na
OR Quart 3 2.4 3.3 2.3 3.0 1.0 >2.3
p Value 0.26 0.32 0.38 0.23 1.0 <0.51
95% C1 0f 0.51 0.32 0.36 0.51 0.059 >0.19
OR Quart3 12 34 15 18 17 na
OR Quart43.5 0.96 5.2 4.8 2.0 >1.0
p Value 0.11 0.98 0.065 0.073 0.58 . . <10
95% C1 0f 0.77 0.057 0.90 0.86 0.17 1.1 >na >0.059 >0.057
OR Quart4 16 16 31 27 23 36 na na na
Progesterone
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
21.1 34.6 21.1 81.5
28.4 42.7 28.4 81.5
.5 28.2 25.5 88.8
0.044 0.0098
2.91 4.04 2.91 18.7
152 113 152 144
—§§_13_5062 18 62 2
18 so 2
WO 78253
48hr prior to AKI stage
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
Median 18.8 27.5
Average 30.4 38.1
——44
25291 34098
—:—_
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.51 0.19 0.60 0.68 0.41 0.73 0.71 0.70 0.45
SE 0.077 0.12 0.086 0.076 0.14 0.072 0.21 0.21 0.15
p 0.85 0.0085 0.24 0.018 0.51 0.0015 0.32 0.35 0.76
Cutoff 5 35.0 57.6 35.0 35.0 57.6 . . . .
Sens 5 37% 0% 47% 50% 20% 53% 50% 50% 25%
Spec5 81% 80% 81% 81% 80% 81% 81% 80% 81%
Cutoff 6 61.1 75.2 68.1 61.1 75.2 68.1 61.1 75.2 68.1
Sens 6 11% 0% 13% 17% 0% 16% 50% 50% 0%
Spec 6 90% 90% 91% 90% 90% 91% 90% 90% 91%
OR Quart 2 1.0 >0 1.0 0.63 0 0.47 >1.1 >1.0 1.1
p Value 1.0 <na 1.0 0.63 na 0.55 <0.96 <1.0 0.96
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value . .
95% C1 0f 0.39 >0.34 0.67 0.83 0.062 1.1 >0.061 >0.059 0.061
OR Quart4 5.8 na 16 17 18 36 na na 19
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
.70 3.12 2.72
6.00 4.28 2.72
3.89 4.22 1.07
0.74 0.13 0.61
0.533 0.569 0.000958 1.97
.2 14.4 20.4 3.48
18 62 2
18 50 2
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
2.59 3.57 1.98
2.89 4.74 1.98
1.78 3.92 0.0187
0.30 0.32
0.569 0.000958 1.97
4.81 20.4 2.00
101 2
81 2
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
6.52 2.96 3.44
6.14 3.93 3.72
3.82 3.53 1.74
0.025 0.91
0.757 0.00599 1.92
14.4 19.3 6.10
19 53 4
19 42 4
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
WO 78253
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.50 0.30 0.56 0.67 0.36 0.71 0.45 0.25 0.58
0.16
0.58
1.95 3.35
100% 100% 75%
32% 25% 60%
1.95 1.95 1.78
100%
1.78
100%
A .54
Cutoff 5 . . . . 5.79
Sens 5 26% 0% 33% 50% 0% 25%
SpecS 81% 80% 81% 81% 80% 81%
Cutoff 6 7.12 8.80 7.09 7.12 8.80 7.09
Sens 6 16% 0% 20% 33% 0% 0%
Spec 6 90% 90% 91% 90% 90% 91%
OR Quart 20.75 >0 0.43 1.6 >2.2 . . >1.1
p Value 0.71 <na 0.38 0.63 <0.52 0.63 <0.96 <na <0.96
95% C1 0f 0.17 >na 0.068 0.24 >0.19 0.23 >0.061 >na >0.061
OR Quart2 3.3 na 2.8 11 na na
OR Quart 3 1.0 >3.4 1.0 2.2 >10 >23
p Value 1.0 <0.31 1.0 0.38 <0.98 <0.51
95% C1 0f 0.24 >0.33 0.20 0.36 >0.062 >0.19
OR Quart3 4.2 na 4.9 14 na na
OR Quart 4 0.94 >2.2 1.4 7.4 >22 >10
p Value 0.93 <0.52 0.70 0.022 <0.52 . <10
95% C1 0f 0.23 >0.19 0.29 1.3 >0.19 1.8 >na >na >0.057
OR Quart4 3.9 na 6.3 41 na 57 na na na
Growth/differentiation factor 15
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
58000 18600 54200
95300 73200 54200
95600 151000 48900
0.56 0.86
1700 641 19600
341000 810000 88800
—§§_13_50 18 62 2
18 so 2
2012/066152
48hr prior to AKI stage
Cohort 1 Cohort 1
40200
83500 83500
130000
810000
101 2
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
Median 17400 33300 88 1 00 95700
Average 1 4400 80000 112000 44400 110000
97799 79499
0.0020 0.097
641 5180 641 13700
326000 341000 326000 235000
19 53 4
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.57 0.39 0.64 0.68 0.44 0.81 0.67 0.44 0.79
SE 0.077 0.14 0.085 0.076 0.14 0.065 0.21 0.21 0.14
p 0.40 0.43 0.090 0.021 0.67 1.8E—6 0.43 0.78 0.034
70800
12900
100%
1 3%
12900
100%
1 3%
49600 88800 49600 88800 37400
Sens 4 42% 20% 47% 61% 0% 0% 75%
Spec 4 71% 70% 72% 71% 70% 70% 72%
Cutoff 5 76400 116000 49500 76400 116000 116000 49500
Sens 5 42% 0% 47% 39% 0% 74% 50% 0% 75%
Spec5 81% 80% 81% 81% 80% 81% 81% 80% 81%
Cutoff 6 205000 218000 93200 205000 218000 93200 205000 218000 93200
Sens 6 11% 0% 47% 17% 0% A 7% 0% 0% 50%
Spec 6 90% 90% 91% 90% 90% 91% 90% 90% 91%
OR Quart 2 1.0 >2.2 2.3 1.6 >3.5 1.0 >0 >10 >1.1
p Value 1.0 <0.52 0.38 0.63 <0.29 1.0 <na <0.98 <0.96
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value .
95% C1 0f 0.60 >0.064 0.90 0.86 >0.064 2.9 >0.061 >na >0.32
OR Quart4 10 na 31 27 na 250 na na na
Proprotein convertase subtilisin/kexin type 9
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
882 359 580
3140 3220 580
3890 13100 0
0.98 0.78
70.6 81.8 580
11400 96400 580
18 62 2
18 50 2
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
3260 419 586
4450 2890 586
4180 10600 8.37
0.74 0.76
121 48.1 580
11400 96400 592
101 2
81 2
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
897 366 1740
2550 2730 2600
3270 13200 2560
0.95 0.98
70.6 95.1 580
11400 96400 6340
19 53 4
19 42 4
l 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.61 0.71 0.58 0.62 0.73 0.65 0.67 0.63 0.83
0.13
0.010
575 1360
100% 100% 75%
66% 61% 85%
575 575 575
100%
100%
Cutoff 5 1300
Sens 5 37% 40% 33% 44% 80% 75%
SpecS 81% 80% 81% 81% 80% 81%
Cutoff 6 2690 4940 2690 2690 4940 2690
Sens 6 26% 20% 27% 39% 20% 25%
Spec 6 90% 90% 91% 90% 90% 91%
OR Quart 2 1.0 >1.0 0.70 0.16 0 . >0
p Value 1.0 <1.0 0.67 0.11 na 0.38 <na <na <na
95% C1 Of 0.21 >0.059 0.13 0.017 na 0.069 >na >na >na
OR Quart2 4.7 na 3.7 1.5 na na
OR Quart 3 0.71 >2.2 0.43 0.75 0 >1.1
p Value 0.68 <0.54 0.38 0.71 na <0.96
95% C1 Of 0.14 >0.18 0.068 0.17 na >0.061
OR Quart3 3.7 na 2.8 3.3 na na
OR Quart42.5 >2.1 1.8 2.0 4.3 >3.5
p Value 0.21 <0.56 0.45 0.31 0.20 . <0.30
95% C1 Of 0.60 >0.18 0.40 0.52 0.45 0.52 >na >na >0.32
OR Quart4 10 na 7.9 7.7 42 9.6 na na na
Table 2: Comparison of marker levels in urine samples collected from Cohort 1 (patients
that did not ss beyond RIFLE stage 0 or R) and in urine samples collected from
subjects at 0, 24 hours, and 48 hours prior to reaching stage I or F in Cohort 2.
Toll-like receptor 2
Cohort 2
0.592
0.690
0.516
0.10
0.0621
WO 78253
0hr prior to AKI stage
sCr only
0.31
0.21
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
95% CI of
OR Quart2
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of
OR Quart4
Antithrombin-III
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
121 1 1 1 54. 3
590 340 198
1350 89 6 435
0.056 0.43
4.48 0.0182 0.347
6000 6000 2060
61 465 25
61 212 25
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
0.0182
6000
48hr prior to AKI stage
2012/066152
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
6000 6000 2060
59 486 23
59 209 23
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
95% CI of
OR Quart2
OR Quart 3 .
p Value
95% CI of
OR Quart3
_ _ _ _
OR Quart41.2 1.0 1.2 1.8 . 1.9 3.2 . 2.8
p Value 0.68 1.0 0.68 0.13 0.27 0.12 0.088 0.34 0.13
95% C1 0f 0.51 0.062 0.51 0.84 0.48 0.85 0.84 0.31 0.73
OR Quart4 2.8 16 2.8 4.0 A .3 12 11
Extracellular matrix protein 1
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
1.18 0.409 0.316
1.85 0.871 1.11
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
2.39 1.19 1.82
2.9E—7 0.34
0.00789 28 0.0117
13.8 10.9 6.57
61 466 25
61 212 25
I stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1.31 0.495 1.01
1.52 1.76 2.27
1.30 10.2 2.77
0.93 0.89
0.128 0.000528 0.272
M(Sxamp) 4.67 150 7.31
n 638 7 638 14 638 8
11 (Patient) 267 7 267 14 267 8
U0 only 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.795 0.463 0.311
1.82 0.893 0.986
2.45 1.20 1.59
1.7E—6 0.72
0.00419 0.000528 0.0117
13.8 10.9 6.57
59 486 23
59 209 23
0hr prior to AKI stage 48hr prior to AKI stage
sCr only
0.49
0.11
0.94
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
95% CI of
OR Quart2
OR Quart 3 .
p Value
95% CI of
OR Quart3
OR Quart 4 . . . . . . . . .
p Value 0.0081 1.00 0.012 5.0E—4 0.11 0.0019 0.76 <0.21 0.77
95% C1 Of 1.4 0.14 1.3 1.9 0.74 1.6 0.39 >0.45 0.39
OR Quart4 11 7.2 10 9.9 18 8.6 3.6 na 3.6
Coagulation factor XIII A and B chains
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
. 6.25 3.84 2.26
774 11.6 7.04 6.20
.1 9.23 8.57
0.0027 0.66
—_0.000180 0.000189 0.000120 80
143 84.2 30.6
61 466 25
61 212 25
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.000120 0.000180
UO only 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
Median 3.74 .80 3.74 6.27 3.74 2.54
Average 6.96 8.29 6.96 11.7 6.96 5.53
WO 78253
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
.5 9.13 7.09
0.0017 0.46
0.000189 0.000120 0.000327
143 84.2 22.9
59 486 23
59 209 23
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.51 0.30 0.53 0.57 0.53 0.57 0.43 0.52 0.43
SE 0.044 0.11 0.046 0.040 0.079 0.041 0.061 0.10 0.063
p 0.75 0.076 0.45 0.068 0.68 0.086 0.23 0.85 0.29
nCohort 1 466 638 486 466 638 A 86 466 638 A 86
nCohort 2 48 7 45 61 14 59 25 8 23
0.844
0.470
80% 88% 83%
9% 13% 29% 13%
0.000189 0.000324 0.000145 0.427
96% 100% 91%
7.46
13.2 10.8
% 25% 17%
80% 80% 80%
Cutoff 6 18.9 20.0 18.8 18.9 20.0 18.8 18.9 20.0 18.8
Sens 6 10% 0% 13% 16% 0%
Spec 6 90% 90% 90% 90% 90%
OR Quart21.2 0 1.4 0.83 4.1
p Value 0.68 na 0.51 0.65 0.21 . .
95% C1 0f 0.51 na 0.55 0.36 0.45 0.26 0.21 0.31 0.33
OR Quart2 2.8 na 3.3 1.9 37
OR Quart 3 1.0 2.0 1.2 1.3 6.2
p Value 1.0 0.57 0.65 0.45 0.093
95% CI of 0.42 0.18 0.49 0.62 0.74
OR Quart3 2.4 23 3.1 2.9 52
OR Quart41.2 4.1 1.5 1.6 3.0
p Value 0.68 0.21 0.39 0.20 0.34 . .
95% C1 0f 0.51 0.45 0.61 0.77 0.31 0.67 0.61 0.31 0.61
OR Quart4 2.8 37 3.6 3.4 30 2.9 5.8 29 7.1
WO 78253
Vitronectin
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
36.0 29.7 16.5
77.7 71.8 66.6
125 137 152
0.75 0.86
3.33 0.112 0.237
750 750 750
61 466 25
61 212 25
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
55.7 31 . 1 22. 5
63.6 73.4 211
60.3 131 334
0.78 0.0042
.44 0.0795 4.15
228 750 750
14 638 8
14 267 8
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
36.0 29.1 16.5
78.5 70.4 39.3
127 137 55.5
0.67 0.28
2.03E—5 0.112 0.237
750 750 216
59 486 23
59 209 23
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
0.43 . . 0.58
Cutoff 3 6.27 0.112 6.27 14.1 8.72 14.1 4.09 4.09 1.94
Sens 3 92% 100% 91% 90% 93% 92% 92% 100% 91%
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
A 8.3
. 74.8 67.1
16% 38% 13%
80% 80% 80%
Cutoff 6 147 168 139 147 168 139 147 168 139
Sens 6 21% 0% 24% 10% 7%
Spec 6 90% 90% 90% 90% 90%
OR Quart 20.99 2.0 0.99 2.6 2.0
p Value 0.99 0.57 0.99 0.031 0.42
95% CI of 0.38 0.18 0.36 1.1 0.37
OR Quart2 2.6 23 2.7 6.1 11
OR Quart 3 0.88 1.0 0.86 1.8 1.0 . . .
p Value 0.80 1.00 0.78 0.19 1.0 0.032 0.76 na 0.73
95% CI of 0.33 0.062 0.30 0.74 0.14
OR Quart3 2.4 16 2.4 4.5 7.2
OR Quart42.7 3.1 3.1 2.7 3.1
p Value 0.017 0.34 0.0095 0.021 0.17 . . . .
95% C1 0f 1.2 0.31 1.3 1.2 0.61 1.3 0.70 0.25 0.81
OR Quart4 6.2 30 7.2 6.5 15 8.5 6.4 9.1 8.7
eukin-17F
O—hrprior to AKI stage 24hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
Median 0.00406 0.00382 0.00406 0.00530
000000 000000 0.00500 0.00780
0.00841
0.034
9.15E—5
0.0300
Cohort 2
0.00238
0.00811
0.0102
0.37
0.00208
Cohort 2
. 0.00604
000001 000800
StdeV 0.00427 0.00495 0.00854
—_0100-0 0000-0
0.0300
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
0.60
0.075
0.16
0.00282 0.00238 2 0.00232 0.00198 0.00232
72% 100% 71% 80% 100% 79%
37% 29% 37% 30% 24% 30%
0.00238 0.00238 0.00238 0.00232 0.00198 0.00198
89% 100% 88% 80% 100% 84%
% 29% 31% 30% 24% 27%
0.00232 0.00238 0.00232 0.000770 0.00198 9.15E—5
% 29% 30% 13% 24% 8%
0.00555 0.00579 0.00555 0.00555 0.00579 0.00555
71% 70% 70% 71% 70% 70%
0.00770 0.00770 0.00770 0.00770 0 0
17% 0% 18% 30% 33% 32%
80% 81% 81% 80% 81% 81%
0.0100
OR Quart212 >10 11 1.8 0 1.3
p Value 0.022 <1.0 0.029 0.45 na 0.73
95% CI of 1.4 >0.060 1.3 0.39 na 0.27
OR Quart2 110 na 99 8.4 na 6.7
OR Quart 34.5 >1.0 4.6 1.8 2.1 1.7
p Value 0.19 <0.98 0.19 0.45 0.56 0.48
95% CI of 0.47 >0.062 0.47 0.39 0.18 0.37
OR Quart3 43 na 44 8.4 24 8.2
OR Quart 44.3 >0 4.4 2.8 0 2.7
p Value 0.20 <na 0.20 0.17 na 0.19
95% C1 Of 0.45 >na 0.45 0.64 na 0.61
OR Quart4 42 na 42 12 na 12
Interleukin-22
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage
Cohort 2
1.78E—5
52 000799
StdeV 0.00339 0.0192
p(t—ntest) 9.1E4
1 stage
Cohort 2
1 stage
Cohort 2
1.78E—5
0.0145
0.0535
Sens 3 100% 100% 100%
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
1.78E—5
Cutoff 6 1.78E—5 0.000334 1.78E—5 1.78E—5 0.000334 1.78E—5
Sens 6 22% 0% 24% 30% 33% 32%
Spec 6 93% 90% 95% 93% 90% 95%
OR Quart2>15 >1.1 >12 >16 >21 >11
p Value <0.013 <0.96 <0.026 <0.012 <0.56 <0.029
95% C10f >1.8 >0O64 >13 >18 >018 >1.3
OR Quart2 na na na na na na
OR Quart 3 >47 >10 >62 >47 >0 >60
p Value <0.18 <0.98 <0.11 <0.18 <na <0.12
95% C1 of >049 >0O62 >067 >049 >na >064
OR Quart3 na na na na na na
OR Quart 4>4.5 >0 >45 >7.6 >10 >75
p Value <0.19 <na <0.19 <0.069 <1.0 <0.072
95% C1 of >047 >na >047 >086 >0O6O >083
OR Quart4 na na na na na na
0—hrprior to AKI stage
Cohort l Cohort 2
Median
———.
WO 78253
Cohort 2
2.84
3.81
2.82
0.53
0.792
9.76
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
0.45
0.088
0.56
nd nd nd 14 13
1.97
1.60
0.862
.32
6.71
7.57
OR Quart 2 nd nd nd 1.4 >1.1 1.0
p Value nd nd nd 0.69 <0.96 1.0
95% CI of nd nd nd 0.28 >0.064 0.18
OR Quart2 nd nd nd 6.8 na 5.5
OR Quart 3 nd nd nd 1.4 >1.1 1.4
p Value nd nd nd 0.69 <O.96 0.69
95% CI of nd nd nd 0.28 >0.064 0.28
OR Quart3 nd nd nd 6.8 na 7.0
OR Quart 4 nd nd nd 1.0 >1.1 1.0
p Value nd nd nd 1.0 <O.96 0.96
95% CI of nd nd nd 0.19 >0.064 0.19
OR Quart4 nd nd nd 5.4 na 5.7
WO 78253
Cohort 2
4.67
.73
4.58
0.83
0.428
.5
I stage
Cohort 2
I stage
Cohort 2
4.01
.63
4.55
0.92
0.428
.5
0hr prior to AKI stage
sCr only sCr only
nd 0.56
nd nd nd 1.19 1.19 1.19
nd nd nd 93% 100% 92%
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
6.89
8.80
Cutoff 6 nd nd nd 12.5 12.5 12.5
Sens 6 nd nd nd 7% 0% 8%
Spec 6 nd nd nd 91% 91% 90%
OR Quart 2nd nd nd 7.2 >1.0 7.2
p Value nd nd nd 0.076 <0.98 0.078
95% CI of nd nd nd 0.82 >0.062 0.80
OR Quart2 nd nd nd 64 na 65
OR Quart 3 nd nd nd 2.1 >1.0 2.0
p Value nd nd nd 0.56 <0.98 0.58
95% CI of nd nd nd 0.18 >0.062 0.17
OR Quart3 nd nd nd 24 na 24
OR nd nd nd 5.8 >10 1.4
p Value nd nd nd 0.12 <1.0 0.20
95% CI of nd nd nd 0.63 >0.060 0.45
OR Quart4 nd nd nd 53 na 1 2
Proprotein convertase subtilisin/kexin type 9
Cohort 2
1190
2012/066152
Cohort 2
1930
3190
0.8 1
11400
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
0.58
0.088
0.36
nCohort 2 nd nd nd 14 3 13
OR Quart 2 nd nd nd >6.0 >0 1.4
p Value nd nd nd <0.11 <na 0.20
95% C1 Of nd nd nd >0.66 >na 0.45
OR Quart2 nd nd nd na na ‘ 2
OR Quart 3 nd nd nd >75 >21 5.7
p Value nd nd nd <0.071 <0.54 0.12
95% C1 0f nd nd nd >0.84 >0.18 0.62
OR Quart3 nd nd nd na na 53
OR Quart4nd nd nd >33 >10 3.1
p Value nd nd nd <0.31 <1.0 0.34
95% CI of nd nd nd >0.33 >0.060 0.30
OR Quart4 nd nd nd na na 32
Table 3: Comparison of marker levels in urine samples collected within 12 hours of
reaching stage R from Cohort 1 (patients that reached, but did not progress beyond,
RIFLE stage R) and from Cohort 2 (patients that reached RIFLE stage I or F).
Estradiol
UO only
Cohort 2 Cohort 1 Cohort 2
nd 11.6 6.20
Average 14.5 9. 36 nd 16.6 6.58
_—_ nd 014
Min 1.46 A .27 nd 1.46 4.77
55. 8 34.2 nd 55.8 9.47
nd 17 5
nd 17 5
At Enrollment
sCr or UO sCr only UO only
AUC 0.36 nd 0.21
SE 0.11 nd 0.13
p 0.17 nd 0.028
t 1 23 nd 17
nCohort 2 11 nd 5
Cutoff1 5.56 nd 4.77
Sens 1 73% nd 80%
Spec 1 22% nd 12%
Cutoff 2 4.77 nd 4.77
Sens 2 82% nd 80%
Spec 2 17% nd 12%
Cutoff 3 4.27 nd 3.57
Sens 3 91% nd 100%
Spec 3 17% nd 12%
Cutoff 4 19.9 nd 20.2
Sens 4 9% nd 0%
Spec 4 74% nd 71%
Cutoff 5 24.6 nd 25.9
Sens 5 9% nd 0%
Spec 5 83% nd 82%
Cutoff 6 26.7 nd 38.9
Sens 6 9% nd 0%
Spec 6 91% nd 94%
OR Quart 2 2.7 nd >1.5
p Value 0.46 nd <0.79
95% CI of 0.19 nd >0.071
OR Quart2 37 nd na
OR Quart 3 10 nd >3.0
p Value 0.067 nd <0.43
95% CI of 0.85 nd >0.20
OR Quart3 120 nd na
At Enrollment
sCr or UO sCr only UO only
OR Quart 4 4.8 nd >4.0
p Value 0.22 nd <0.33
95% C1 0f 0.38 nd >0.25
OR Quart4 60 nd na
/differentiation factor 15
U0 only
Cohort 2 Cohort 1 Cohort 2
nd 108000 11400
nd 105000 28900
nd 83100 31300
nd 0.061
nd 5720 5560
nd 284000 79100
nd 17 5
nd 17 5
At Enrollment
sCr or UO sCr only UO only
AUC 0.44 nd 0.19
SE 0.11 nd 0.13
p 0.60 nd 0.013
nCohort 1 23 nd 17
nCohort 2 11 nd 5
Cutoff 1 11 100 nd 5720
Sens 1 73% nd 80%
Spec 1 22% nd 6%
Cutoff 2 5720 nd 5720
Sens 2 82% nd 80%
Spec 2 13% nd 6%
Cutoff 3 5170 nd 0
Sens 3 91% nd 100%
Spec 3 9% nd 0%
Cutoff 4 115000 nd 116000
Sens 4 9% nd 0%
Spec 4 74% nd 71%
Cutoff 5 151000 nd 172000
Sens 5 9% nd 0%
Spec 5 83% nd 82%
Cutoff 6 208000 nd 221000
Sens 6 9% nd 0%
Spec 6 91% nd 94%
OR Quart 2 13 nd >0
p Value 0.044 nd <na
95% C1 0f 1.1 nd >na
OR Quart2 170 nd na
OR Quart 3 2.3 nd >6.0
At Enrollment
sCr or UO sCr only UO only
p Value 0.53 nd <0.19
95% CI of 0.17 nd >0.42
OR Quart3 31 nd na
OR Quart 4 4.8 nd >4.0
p Value 0.22 nd <0.33
95% C1 0f 0.38 nd >0.25
OR Quart4 60 nd na
Proprotein convertase isin/kexin type 9
——Cron1y wordy
Cohort 1 Cohort 2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
Average 2310 1320 nd nd 2820 364
nd nd 0.29
nd nd 120 176
nd nd 19200 521
nd nd 17 5
nd nd 17 5
At Enrollment
sCr or UO sCr only UO only
AUC 0.49 nd 0.38
SE 0.11 nd 0.15
p 0.93 nd 0.41
nCohort 1 23 nd 17
nCohort 2 11 nd 5
Cutoff 1 353 nd 293
Sens 1 73% nd 80%
Spec 1 39% nd 35%
Cutoff 2 293 nd 293
Sens 2 82% nd 80%
Spec 2 35% nd 35%
Cutoff 3 170 nd 170
Sens 3 91% nd 100%
Spec 3 22% nd 24%
Cutoff 4 2060 nd 2250
Sens 4 18% nd 0%
Spec 4 74% nd 71%
Cutoff 5 2510 nd 3030
Sens 5 18% nd 0%
Spec 5 83% nd 82%
Cutoff 6 4940 nd 10700
Sens 6 9% nd 0%
Spec 6 91% nd 94%
OR Quart 2 2.1 nd >1.5
p Value 0.49 nd <0.79
At ment
sCr or UO sCr only UO only
95% CI of 0.25 nd >0.071
OR Quart2 18 nd na
OR Quart 3 2.8 nd >6.0
p Value 0.32 nd <0.19
95% CI of 0.36 nd >0.42
OR Quart3 22 nd na
OR Quart 4 1.2 nd >1.5
p Value 0.89 nd <0.79
95% CI of 0.12 nd >0.071
OR Quart4 11 nd na
Table 4: Comparison of the maximum marker levels in urine samples collected from
Cohort 1 (patients that did not progress beyond RIFLE stage 0) and the maximum values
in urine samples collected from subjects between enrollment and 0, 24 hours, and 48
hours prior to reaching stage F in Cohort 2.
Toll-like receptor 2
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
0.399 0.926 0.399 0.378
48hr prior to AKI stage
8 22 3
8 22 3
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
nd nd 0.69
nd nd .
p 0.067 nd 0.087 0.087 nd 0.11 0.87 nd 0.87
nCohort 1 22 nd 22 22 nd 22 22 nd 22
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
0.346
100%
0.346
100%
0.346
100%
0.678
0.838
1.48
>3.0
<0.43
95% CI of >0.20
OR Quart2 Ila
OR Quart 3 >0
p Value <0.45 nd <0.45 <0.45 nd <na nd <na
95% CI of >0.20 nd >0.20 >0.20 nd >na
OR Quart3 na nd na na nd na
OR Quart 4 >7.0 nd >7.0 >7.0 nd >1.0
p Value <0.13 nd <0.13 <0.13 nd <1.0 nd <1.0
95% CI of >0.57 nd >O.57 >O.57 nd >0.050 nd >0.050
OR Quart4 na nd Ila Ila nd Ila Ila nd Ila
Antithrombin-III
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
22 106 13
22 106 13
48hr prior to AKI stage
WO 78253
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
697 644 761
1520 1360 1740
0.89 0.79
11.5 3.56 10.2
5660 6000 5660
13 217 10
13 217 10
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
268 148 219
1040 610 992
1940 1360 2060
0.30 0.49
54.7 3.56 36.0
5660 6000 5660
13 117 7
13 117 7
0hr prior to AKI stage
sCr only
0.57
0.085
.7 4.1 0.47 5.7 1.5 0.47 1.5 . 0
p Value 0.12 0.21 0.54 0.12 0.66 0.54 0.67 0.65 ha
95% CI of 0.63 0.45 0.040 0.63 0.24 0.040 0.23 0.25 ha
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of
. . . . . .
OR Quart4 85 30 15 75 12 9.7 7.6
ellular matrix protein 1
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
2.06 0.536 1.49
.48 0.998 3.29
12.1 1.23 4.20
2.5E—4 2.5E—5
0.327 0.0273 0.327
57.7 7.81 14.4
22 106 13
22 106 13
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1.49 0.851 1.38
3.31 2.25 3.75
4.16 10.9 4.71
0.73 0.66
0.327 0.0143 0.327
14.4 150 14.4
13 217 10
13 217 10
-Cohort 1U0 only 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
' 2.68 0.678 2.18
6.95 1.11 2.57
.4 1.26 3.11
7.3E—5 0.0087
0.327 0.0273 0.327
57.7 7.81 9.15
13 117 7
13 117 7
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
0.66
0.12
0.16
23 13 14 22 13 10 7
0.721 0.451
70% 71%
46% 39%
0.348
0.324
100%
1.21
2.04
2.56
OR Quart 2 >3.3 2.0 2.0 >3.3 >32 >42 >33
p Value <0.31 0.58 0.58 <0.31 <0.32 <0.20 <0.31
95% CI of >O.33 0.18 0.17 >O.33 >O.33
OR Quart2 Ila 23 23 Ila Ila
OR Quart 3 >9.0 5.4 0.97 >11 >0
p Value <0.047 0.13 0.98 <0.031 <na
95% CI of >1.0 0.61 0.058 >1.2 >na
OR Quart3 Ila 48 16 Ila Ila
OR Quart 4 >21 5.3 13 >17 >4.6
p Value <0.0048 0.13 0.016 <0.0091 0.21 <0.049 <0.20 <0.18
95% CI of >2.5 0.60 1.6 >2.0 0.45 >1.0 >O.46 >0.48
OR Quart4 Ila 47 110 Ila 38 Ila Ila Ila
Coagulation factor XIII A and B chains
48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
8.53 5.92 7.60
13.1 9.60 8.49
13.1 13.5 8.58
0.27 0.77
0.579 0.000189 0.0238
46.4 84.2 30.6
22 106 13
22 106 13
WO 78253
48hr prior to AKI stage
0.000189
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.745 0.000189 .
46.4 84.2 14.5
13 117 7
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.65 0.51 0.65 0.62 0.50 0.63 0.51 0.46 0.47
SE 0.067 0.083 0.083 0.069 0.083 0.087 0.086 0.095 0.11
p 0.026 0.88 0.073 0.074 0.97 0.15 0.86 0.69 0.82
2.94
2.04
18% 22%
0.809
100%
.0
Cutoff5 16.0 18.5 16.3 16.0 18.5 . . . 16.3
Sens 5 30% 8% 36% 27% 8% 31% 15% 10% 0%
Spec 5 80% 80% 80% 80% 80% 80% 80% 80% 80%
Cutoff 6 20.7 24.7 20.7 20.7 24.7 20.7 20.7 24.7 20.7
Sens 6 26% 8% 36% 23% 8% 31% 8% 10% 0%
Spec6 91% 90% 91% 91% 90% 91% 91% 90% 91%
OR Quart 2 1.4 2.0 0.97 0.72 2.7 0.97 0.22 1.5 3.2
p Value 0.69 0.42 0.97 0.69 0.25 0.97 0.18 0.65 0.32
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
95% CI of
OR Quart2
OR Quart 3 .
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value .
95% C1 0f 0.88 0.13 0.62 0.62 0.25 0.48 0.14 0.37 0.18
OR Quart4 15 7.2 18 8.7 9.7 15 3.4 12 24
Vitronectin
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
87.4 35.2 56.6
131 90.6 136
173 148 220
0.26 0.33
3.33 2.17 0.119
750 750 750
22 106 13
22 106 13
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
.6 86.8 45.6 71.7
148 122 165
214 181 244
0.61 0.47
6.79 1.96 6.79
750 750 750
13 217 10
13 217 10
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
114 36.5 101
139 87.8 139
132 145 171
0.23 0.37
3.33 2.17 0.119
462 750 462
13 117 7
13 117 7
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.64 0.59 0.66 0.63 0.59 0.64 0.55 0.56 0.55
SE 0.067 0.085 0.083 0.069 0.085 0.087 0.087 0.096 0.12
p 0.036 0.28 0.056 0.069 0.29 0.12 0.56 0.55 0.65
nCohort1 106 217 117 106 217 117 106 217 117
nCohort 2 23 13 14 22 13 13 13 10 7
23.8
. 2.83
80% 86%
% 22% 2%
2.83 23.0 0
92% 90% 100%
64.8
148 96.7
31% 20% 57%
80% 80% 80%
OR Quart 20.17 0.48 0.30 0.17 0.48 0.48
p Value 0.12 0.56 0.31 0.12 0.56 0.56
95% CI Of 0.019 0.043 0.030 0.019 0.043 0.042
OR Quart2 1.6 5.5 3.1 1.6 5.5 5.6
OR Quart 3 1.2 3.8 0.30 1.2 3.8 0
p Value 0.74 0.10 0.31 0.74 0.10 na
95% CI of 0.34 0.76 0.030 0.34 0.76 na
OR Quart3 4.6 19 3.1 4.6 19 na
OR Quart42.7 1.5 3.6 2.5 1.5 2.1
p Value 0.10 0.66 0.074 0.15 0.66 . . . 0.40
95% CI Of 0.82 0.24 0.88 0.73 0.24 0.74 0.49 0.10 0.36
OR Quart4 8.9 9.3 15 8.2 9.3 13 9.6 4.0 13
Estradiol
48hr prior to AKI stage
Cohort 1 Cohort 2
6.69 18.2
11.2 19.0
18.3 14.8
0.47
0.143 4.59
128 34.2
50 3
WO 78253
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
9.48 nd nd
13.0 nd nd
.5 nd nd
0.93 nd nd
4.59 nd nd
28.3 nd nd
4 nd nd
4 nd nd
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
14.0 6.61 18.2
16.7 8.23 19.0
13.0 6.60 14.8
0.030 0.016
4.59 0.143 4.59
34.2 31.6 34.2
4 42 3
4 42 3
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
0.58
0.15
0.60
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
Sens 6 29% 25% 50% 29% 25% 67%
Spec 6 90% 90% 90% 90% 90% 90%
OR Quart2>1.1 0 >10 >1.1 0 >1.1
p Value <0.96 na <1.0 <0.96 na . <0.95
95% C1 0f >0.061 na >0.055 >0.061 na >0.055 >0.061 nd >0.060
OR Quart2 na na na na na na na nd na
OR Quart 3 >38 2.1 >1.1 >3.8 2.1 >1.1 >0 nd >0
p Value <0.27 0.56 <0.95 <0.27 0.56 <0.95 <na nd <na
95% C1 0f >0.35 0.18 >0.060 >0.35 0.18 >na
OR Quart3 na 25 na na 25 na
OR Quart 4 >35 0.95 >22 >35 0.95 >2.2
p Value <0.30 0.97 <0.54 <0.30 0.97 . <0.54
95% C1 0f >0.32 0.056 >0.17 >0.32 0.056 >0.17 >0.17 nd >0.17
OR Quart4 na 16 na na 16 na na nd na
Progesterone
48hr prior to AKI stage
Cohort 1 Cohort 2
22.9 53.1
31.4 43.9
27.4 20.1
0.44
2.91 20.9
152 57.8
50 3
50 3
sCr only 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
31.1 nd nd
31.9 nd nd
21.7 nd nd
0.69 nd nd
7.44 nd nd
57.8 nd nd
4 nd nd
4 nd nd
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
55.5 21.1 53.1
51.7 32.2 43.9
22.7 32.9 20.1
0.25 0.55
.9 2.91 20.9
75.2 152 57.8
4 42 3
WO 78253
48hr prior to AKI stage
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.62 0.48 0.77 0.62 0.48 0.77 0.69 nd 0.72
SE 0.12 0.15 0.14 0.12 0.15 0.14 0.18 nd 0.17
0.20
19.3
100%
19.3
100%
19.3
100%
.0
70% nd 71%
‘ 0.1
68.1
>1.1
<O.95
95% CI of >0.060
OR Quart2 na
OR Quart 3 . >0
p Value <na
95% CI of >na
OR Quart3 na
OR Quart 4 3.2 1.0 >3.7 3.2 1.0 >37 >22 nd >2.2
p Value 0.33 0.97 <0.29 0.33 0.97 <0.29 <0.55 nd <0.54
95% C1 Of 0.30 0.061 >0.32 0.30 0.061 >0.32 >0.17 nd >0.17
OR Quart4 36 18 na 36 18 na na nd na
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
3.41 3.38 3.41
3.91 4.72 3.29
2.20 4.52 2.45
0.65 0.59
48hr prior to AKI stage
Cohort 1 Cohort 2
58 0.792
.4 5.68
50 3
50 3
48hr prior to AKI stage
Cohort 1 Cohort 2
nd nd
nd nd
nd nd
nd nd
nd nd
nd nd
nd nd
nd nd
I stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
4.54 3.33 3.41
4.17 4.28 3.29
3.80 2.45
0.66
0.00599 0.792
19.3 5.68
42 3
42 3
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only sCr or UO sCr only sCr or UO sCr on1y
0.32
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
7.09
OR Quart22.2 >1.1 0 2.2 >1.1 0 >25 nd 1.1
p Value 0.55 <0.95 na 0.55 <0.95 na <0.47 nd 0.95
95% C1 0f 0.17 >0.064 na 0.17 >0.064 na >0.20 nd 0.060
OR Quart2 27 na na 27 na 20
OR Quart33.5 >1.1 1.0 3.5 >1.1 0
p Value 0.30 <0.95 1.0 0.30 <0.95 na
95% CI of 0.32 >0.064 0.055 0.32 >0.064 na
OR Quart3 39 na 18 39 na na
OR Quart40.93 >2.3 2.0 0.93 >2.3 1.1
p Value 0.96 <0.51 0.59 0.96 <0.51 . . 0.95
95% C1 0f 0.053 >0.19 0.16 0.053 >0.19 0.16 >0.066 nd 0.060
OR Quart4 16 na 26 16 na 26 na nd 20
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
8.98 4.61 10.1
7.92 5.53 9.58
.20 5.47 6.40
0.28 0.22
1.20 0.00501 2.96
.7 28.5 15.7
7 50 3
7 50 3
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
3.83 nd nd
4.46 nd nd
3.33 nd nd
0.52 nd nd
1.20 nd nd
8.98 nd nd
4 nd nd
4 nd nd
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
.9 4.43 10.1
.1 5.17 9.58
.34 4.67 6.40
0.050 0.13
2012/066152
48hr prior to AKI stage
Cohort 1 Cohort 2
0.00501 2.96
16.8 15.7
42 3
42 3
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
0.43 0.43
0.15 0.15
0.66 0.66
81 81
95% CI of
OR Quart2
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of
OR Quart4
Growth/differentiation factor 15
sCr or UO 0hr prior to AKI stage
Cohort 1 Cohort 1 Cohort 2
—26900 38600 26900
2012/066152
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
51100 71300 50900
35000 131000 52900
0.69 0.79
MH—E:109000 5180 641 5180
109000 810000 109000
11 (Sarnp) 7 50 3
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
48500 nd nd
45500 nd nd
32700 nd nd
0.52 nd nd
5180 nd nd
79700 nd nd
4 nd nd
4 nd nd
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
33400 20300 38600
45200 53100 50900
44700 80600 52900
0.85 0.96
64 5180 5180 641 5180
326000 109000 109000 326000 109000
A 2 4 42 3
—:—_ 4 42 s
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only sCr or UO sCr only sCr or UO sCr only
0.59 0.45 0.59 0.51
0.12 0.15 0.12 0.17
nCohort 1
nCohort 2
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only U0 only
0% 0%
70% 70%
124000 124000
0% 0%
205000 218000 205000 205000 218000 205000 205000
0% 0% 0% 0% 0% 0% 0%
90% 90%
95% CI of
OR Quart2
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of
OR Quart4
Proprotein convertase isin/kexin type 9
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1 9 920 406 920
Average 3910 1530 1530 3910 1530
”9— 0.67 0.78
95.1 592 95.1 592
96400 3260 3260 96400 3080
7 50 3
7 50 3
sCr only 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1050 nd nd
1550 nd nd
1 150 nd nd
0.75 nd nd
81 3 nd nd
3260 nd nd
4 nd nd
4 nd nd
UO only 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
Median 86 882 86 882 486 920
WO 78253
48hr prior to AKI stage
Cohort 1 Cohort 2
3360 1530
14800 1350
0.83
_—000 95.1 592
00400 3000
n (Sarnp) ‘ 2 42 3
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
0.75 0.73 0.70 0.75 0.73 0.70 0.74 nd 0.71
0.11 0.15 0.15 0.11 0.15 0.15 0.17 nd 0.17
0.022 0.13 0.20 0.022 0.13 0.20 0.16 nd 0.22
50 81 42 50 81 50 nd 1 2
100%
100%
100%
1060
1360
2850
95% CI of >na
OR Quart2 Ila
OR Quart 3 >2.4
p Value <O.15 <0.30 <O.25 <O.15 <O.49
95% CI of >O.54 >O.33 >036 >O.54 >O.19
OR Quart3 na na Ila Ila Ila
OR Quart 4 >3.5 >1.0 >1.0 >3.5 >1.0
p Value <0.30 <1.0 <1.0 <0.30 <1.0 <1.0 <1.0 nd <1.0
95% CI of >0.32 >0.059 >0.055 >0.32 >0.059 >0.055 >0.056 nd >0.055
OR Quart4 Ila Ila Ila Ila Ila Ila Ila nd Ila
Table 5: Comparison of marker levels in EDTA samples collected from Cohort 1
(patients that did not progress beyond RIFLE stage 0) and in EDTA samples collected
from subjects at 0, 24 hours, and 48 hours prior to reaching stage R, I or F in Cohort 2.
ocalcin- 1
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.0730 0.0607 0.0406
0.00673
0.283 6.00 .
18 50 5
18 25 5
0.990
0.000985 0.0265
6.00 0.119
99 5
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
0.0701 0.109 0.0701 0.0983
0.547 0.198 0.547 0.122
p(t—ntest) 0.27
Mi 0 0.000985 0.00830 0.0150 0.00830
_m10-68n (Samp)
11 (Patient)
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only sCr or UO sCr only sCr or UO sCr only
71% 75% 70% 72% 80%
28% 69% 25% 32% 18%
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
95% CI of
OR Quart2
OR Quart 3 .
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value . . . . .
95% CI of 0.29 na 0.27 0.20 >0.32 0.27 >0.20 na 0.13
OR Quart4 5.0 na 5.7 4.9 na 5.7 na na 8.9
Extracellular matrix protein 1
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1350 1530 1400
1490 1610 1490
478 462 437
0.29 0.45
846 779 1110
Max 3060 2350 3060 2630 3060 2570
n (Samp) 54 13 54 23 54 9
11 (Patient) 53 13 53 23 53 9
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1930 1490 2100
1930 1550 2030
982 449 568
0.24 0.070
1240 535 1440
WO 78253
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
2630 3060 2570
2 110 3
2 92 3
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1450 1490 1400
1520 1570 1490
478 466 436
0.67 0.64
846 779 1110
2630 3060 2570
48 9
44 9
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
0.52 0.60
0.21 0.21
0.94 0.63
95% CI of
OR Quart2
OR Quart 3 0.70 0 1.0 0.83 0 0.49 3.5 >0 1.1
p Value 0.67 ha 1.0 0.80 ha 0.33 0.31 <na 0.96
95% CI of 0.13 ha 0.17 0.21 ha 0.11 0.32 >na 0.061
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only sCr only
OR Quart3
OR Quart 4 .
p Value
95% CI of
OR Quart4
Coagulation factor XIII A and B chains
48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
ior to AKI stage
Cohort 1 Cohort 2
Median 10900 12200
92 3
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
10800 10300 9150
48
44
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.39 0.59 0.44 0.41 0.84 0.50 0.37 0.62 0.45
SE 0.091 0.21 0.095 0.073 0.18 0.072 0.11 0.18 0.11
p 0.23 0.68 0.52 0.20 0.050 1.0 0.23 0.51 0.65
nCohort 1 54 110 48 54 1 10 8 54 110 8
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
8080
9800 7150
100% 89%
44% 15%
9800 6730
100%
12900
15400
80% 81%
22900
0.50
0.59
95% CI of 0.040
OR Quart2 6.2
OR Quart 3 3.1 >1.0 1.6 1.4 >0 3.5 >1.0 2.6
p Value 0.22 <0.98 0.63 0.64 <na 0.31 <0.98 0.32
95% CI of 051 >0.062 0.23 0.32 >113. 0.39
OR Quart3 19 na 11 6.4 na 17
OR Quart 4 1.7 >0 1.6 2.9 >22 . 1.1
p Value 0.58 <na 0.63 0.14 <0.54 0.28 <1.0 0.94
95% CI of 025 >113. 0.23 0.70 >0.18 0.34 >0.060 0.13
OR Quart4 12 na 11 12 na 41 na 8.9
ectin
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
120000 104000 120000 1 1 3000
123000 108000 123000 121000
32800 42000 32800 35300
0.098 0.86
65900 35100 65900 84900
184000 205000 197000
23 54
23 53
48hr prior to AKI stage
Cohort 2
—119000 116000 119000 99400 119000 108000
2012/066152
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
120000 120000 105000
36900 6820 36900 16700
0.44 0.50
35100 94600 35100 87500
_205000 116000 104000 205000 121000
n (Samp) 1 10
11 (Patient)
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
119000 133000 119000 104000 119000 113000
105000 120000 120000
43900 30100 35300
21800 65900 84900
184000 205000 197000
48 9
44 9
0hr prior to AKI stage 48hr prior to AKI stage
sCr only
0.48
0.21
13 2 12
115000 115000 115000
77% 100% 75%
46% 48%
115000 115000
85% 100%
46% 48%
115000
92% 100% 92% 91% 100%
% 48% 27% 0% 9%
132000 137000 128000 132000 132000
54% 0% 58% 39% 22%
70% 70% 71% 70% 70%
158000 153000 140000 158000 158000
23% 0% 33% 9% 11%
173000 173000 167000 173000 173000
23% 0% 25% 4% 11%
4.6 >0 1.0 0.44 >0 0.17 1.0 >1.1 0.50
p Value 0.20 <na 1.0 0.30 <na 0.046 1.0 <0.96 0.59
95% CI of 0.46 >na 0.12 0.092 >na 0.030 0.12 >0.064 0.040
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
OR Quart2
OR Quart 3 .
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of
_ _
OR Quart4 47 na 20 9.6 6.3 8.8 8.9
Estradiol
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1.37 1.24 1.48
2.75 1.80 1.61
3.95 1.84 0.932
0.16 0.77
0.288 0.513 0.541
.4 10.8 3.68
22 53 9
22 52 9
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1.00 1.40 1.48
1.00 2.32 1.42
0.514 2.86 0.529
0.52 0.59
0.638 0.288 0.871
1.37 17.4 1.93
2 108 3
2 91 3
-Cohort 1U0 only 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
' 1.41 1.16 1.40
2.86 1.97 1.55
3.80 2.00 0.926
0.20 0.55
0.288 0.513 0.541
.4 10.8 3.68
24 47 9
24 43 9
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
0.5 1
0.1 1
0.864 1.16
100% 78%
19% 51%
0.552
OR Quart 2 >49 >1.1 >2.2 0.93 >0 0.69 0.43 >2.2 0.46
p Value <0.18 <0.96 <0.55 0.92 <na 0.63 0.51 <0.54 0.55
95% C1 Of >0.49 >0.064 >0.17 0.22 >na 0.037
OR Quart2 na na na 4.0 na 5-8
OR Quart 3 >37 >10 >35 0.93 >1.0 2.4
p Value <0.28 <0.98 <0.30 0.92 <0.98 0.36
95% C1 Of >0.34 >0.062 >0.32 0.22 >0.062 0.36
OR Quart3 na na na 4.0 na 16
OR Quart4>8.7 >0 >12 1.5 >1.1 . . . 1.0
p Value <0.059 <na <0.030 0.56 <0.96 0.36 0.68 <0.96 1.0
95% C1 Of >0.92 >na >1.3 0.38 >0.064 0.47 0.21 >0.064 0.12
OR Quart4 na na na 6.1 na 7.8 11 na 8.3
Progesterone
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
3.87 4.43 3.90
21.9 6.21 5.65
52.7 7.20 4.28
0.036 0.82
1.65 1.35 2.45
194 46.5 15.8
22 53 9
22 52 9
WO 78253
48hr prior to AKI stage
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.64 0.73 0.62 0.48 0.15 0.50 0.49 0.51 0.47
SE 0.090 0.21 0.095 0.074 0.17 0.073 0.11 0.17 0.11
p 0.13 0.27 0.20 0.76 0.040 0.96 0.93 0.96 0.80
3.41
3.09
2.06
100%
6.28
Cutoff5 7.12 8.62 7.77 7.12 8.62 . . . 7.77
Sens 5 38% 0% 25% 27% 0% 29% 22% 33% 22%
Spec5 81% 81% 81% 81% 81% 81% 81% 81% 81%
Cutoff6 9.61 11.6 9.73 9.61 11.6 9.73 9.61 11.6 9.73
Sens 6 15% 0% 17% 23% 0% 17% 11% 33% 0%
Spec6 91% 91% 91% 91% 91% 91% 91% 91% 91%
OR Quart 2 >67 >0 >70 0.58 >0 0.45 0.50 0.96 0.46
p Value <0.10 <na <0.097 0.46 <na 0.28 0.59 0.98 0.55
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4
p Value . .
95% C1 0f >0.69 >0.059 >0.50 0.36 >0.064 0.28 0.041 0.057 0.037
OR Quart4 na na na 5.3 na 1.3 6.2 16 5.8
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
1.15 1.00 1.15 1.34
0.902 1.25 1.14
0.493 0.601 0.550
0.019 0.59
0.000162 0.302 0.0946
1.59 3.76 1.61
22 53 9
22 52 9
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.641 1.07 1.34
0.641 1.13 1.42
0.906 0.602 0.169
0.26 0.41
27 0.000162 1.30
1.28 3.76 1.61
2 108 3
2 91 3
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.946 1.13 1.01
0.868 1.21 1.07
0.506 0.520 0.521
0.011 0.46
0.000162 0.344 0.0946
1.59 2.78 1.61
24 47 9
24 43 9
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.54 0.79 0.54 0.36 0.34 0.36 0.48 0.73 0.45
SE 0.091 0.19 0.095 0.073 0.21 0.071 0.11 0.17 0.11
p 0.68 0.14 0.68 0.046 0.46 0.043 0.88 0.16 0.65
nCohort 1 53 108 53 108 7 53 108 7
nCohort 2 13 2 22 2 24 9 3 9
100% 89%
4% 2% 4% 68% 2%
0.000227 62 0 1.27 0
92% 100% 100% 100%
1.39
1.57 1.66
0% 33% 0%
81% 81% 81%
1.88
OR Quart20 >0 0.18 6.2 >1.1 1.0
p Value na <na 0.15 0.038 <0.96 1.0
95% C1 Of na >na 0.017 1.1 >0.064 0.12
OR Quart2 na na . 35 na 8.3
OR Quart 3 0.73 >0 0.38 1.6 >0 1.6
p Value 0.69 <na 0.32 0.63 <na 0.62
95% C1 Of 0.16 >na 0.058 0.23 >na 0.23
OR Quart3 3.5 na 11 na 12
OR Quart40.68 >2.1 . 8.5 >1.1 1.0
p Value 0.62 <0.56 0.78 0.015 <0.96 . . . 1.0
95% C1 Of 0.15 >0.18 0.26 1.5 >0.064 1.5 0.095 >0.059 0.12
OR Quart4 3.2 na 48 na 34 4.7 na 8.3
Growth/differentiation factor 15
48hr prior to AKI stage
Cohort 1 Cohort 2
1820 1820
2320 2480
1700 1550
0.79
271 733
7790 5690
53 9
2012/066152
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
Median 2080 1150 2080 4700 2080 1010
Average 2650 1150 2650 4700 2650 1180
3700 1830 551
0.12 0.17
2090 271 733
7320 8110 1800
2 108 3
2 91 3
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
2370 2030 1900
3430 2360 2700
2260 1640 1400
0.025 0.57
1010 452 1400
8110 7790 5690
24 47 9
24 43 9
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only
0.74 0.66
0.20 0.071
0.25 0.028
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
Sens 6 8% 0% 8% 18% 50% 11%
Spec6 91% 91% 91% 91% 91% 91%
OR Quart 20.75 >0 0.26 1.3 >0 >7.8
p Value 0.74 <na 0.27 0.73 <na . <0.081
95% C1 0f 0.14 >na 0.024 0.25 >na 0.19 0.46 >na >0.78
OR Quart2 4.0 na 2.9 7.0 na 1.5 48 na na
OR Quart 3 0.43 >1.0 0.92 2.9 >1.0 2.1 1.0 >1.0 >1.1
p Value 0.38 <0.98 0.92 0.18 <0.98 0.33 1.0 <0.98 <0.96
95% C1 0f 0.068 >0.062 0.15 0.62 >0.062 >0.061
OR Quart3 2.8 na 5.5 14 na na
OR Quart41.1 >1.1 1.8 3.6 >10 >38
p Value 0.92 <0.96 0.48 0.100 <1.0 . <0.27
95% C1 0f 0.22 >0.064 0.35 0.78 >0.059 0.76 0.30 >0.19 >0.35
OR Quart4 5.3 na 9.7 17 na 14 35 na na
Proprotein convertase subtilisin/kexin type 9
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
443000 462000 543000
456000 513000 569000
208000 226000 189000
0.30 0.48
102000 76300 326000
858000 0 884000
23 54 9
23 53 9
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
321000 491000 529000
321000 504000 466000
213000 124000 213000 122000
0.23 0.76
76300 233000 76300 326000
Max 1100000 698000 1100000 409000 1100000 543000
n(Samp) 110 2 110 2 110 3
11 (Patient) 92 2 92 2 92 3
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
443000 466000 494000
448000 504000 564000
216000 211000 191000
0.29 0.43
80700 76300 326000
858000 867000 884000
11 (Samp) A 8 12 A 8 25 48 9
48hr prior to AKI stage
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.61 0.72 0.60 0.43 0.21 0.43 0.59 0.48 0.58
SE 0.091 0.21 0.095 0.073 0.19 0.072 0.11 0.17 0.11
0.23 0.28 0.29 0.14 0.93 0.44
54 110 54 1 10 54 110 A 8
13 2 23 2 9 3 9
497000 538000 497000 262000 228000 491000 318000 A 91000
77% 100% 75% 74% 100% 78% 100% 78%
56% 64% 54% 11% 9% 15% 56% 20% 54%
491000 538000 491000 246000 228000 248000 326000 318000 326000
80% 89% 100% 89%
56% 64% 54% 9% 9% 20% 20% 19%
442000 538000 442000 228000 228000 318000 318000 318000
92% 100% 92% 91% 100% 100% 100% 100%
48% 64% 48% 7% 9% 20% 20% 19%
642000 597000 667000 642000 597000 667000 642000 597000 667000
16% 33% 0% 33%
71% 70% 70% 71%
786000 692000 698000 786000 692000 698000 786000 692000 698000
8% 50% 17% 9% 0% 11% 0% 22%
81% 80% 81% 81% 80% 81% 80% 81%
835000 826000 834000 835000 826000 835000 826000 834000
8% 0% 8% 4% 0% 11% 0% 11%
90% 92%
0 >22 0
na <0.52 na
95% c1 of —a
OR Quart2 na
OR Quart 3 2.4
p Value 0.36
95% CI of 0.36
OR Quart3
_ _ 16
OR Quart43.2 >1.0 2.2 2.3 >1.0 3.0 1.5 >1.1 1.5
p Value 0.34 <0.98 0.55 0.25 <0.98 0.14 0.68 <0.96 0.69
95% C1 Of 0.30 >0.062 0.17 0.55 >0.062 0.71 0.21 >0.064 0.21
OR Quart4 35 na 9.8 na 13 11 na 11
Table 6: Comparison of marker levels in EDTA samples collected from Cohort 1
(patients that did not progress beyond RIFLE stage 0 or R) and in EDTA samples
collected from ts at 0, 24 hours, and 48 hours prior to reaching stage I or F in
Cohort 2.
Toll-like receptor 2
Cohort 2
0.0983
0.473
1.45
0.25
—1.14E5 114E5 . 0.00107
M(Sxamp) 19.7 8.94 . 6.59
n 91 19 20
sCr only 0hr prior to AKI stage 24hr prior to AKI stage
Cohort 2
1 stage
Cohort 2
0.0925
0.485
1.49
0.23
6.59
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.49 0.46 0.46 0.54 0.59 0.50
0.00402
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
Cutoff 4 . 0.194 . . 0.194
Sens 4 33% 33%
Spec 4 71% 71%
Cutoff 5 . 0.398 . . 0.398
Sens 5 0% 0%
Spec 5 80% 80%
Cutoff 6 . 4.75 . . 4.75
Sens 6 0% 0%
Spec 6 90% 90%
OR Quart2 . >1.1 . . >1.0
p Value . <0.96 . . <10
95% CI of
. >0.064 . . >0.060
OR Quart2
. na . . na
OR Quart 3 . >2.1 . . >2.1
p Value . <0.54
95% CI of
_ >0.18
OR Quart3
_ na
OR Quart 4 . >0
p Value
95% CI of
OR Quart4
Antithrombin-III
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
ort2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
-nd115000Median 110000 86200 110000 94500
109000 115000 97000
_nd—_36600 53700 36600 35200
0.66 0.21
36200 49300 36200 32000
252000 206000 252000 140000
—§3—33—91112 9 112 7
9 91 7
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
105000 86200 105000 102000
110000 109000 110000 98400
30700 53700 30700 38400
0.92 0.38
36200 49300 36200 32000
186000 206000 186000 140000
98 9 98 6
76 9 76 6
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only lUO only sCr or UO sCr only lUO only
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
0.44
0.13
0.62
nCohort 2 nd nd nd 9 nd 9 7 nd 6
83500
83500
100% 100% 100%
1% 0% 0%
123000 123000 121000
71% 71% 70%
142000 142000 141000
33% 0% 0%
80% 80% 82%
163000 163000 151000
22% 0% 0%
90% 90% 91%
OR Quart 2nd nd nd 0 nd 0.31 1.0 nd 2.1
p Value nd nd nd na nd 0.32 1.0 nd 0.56
95% C1 Of nd nd nd na nd 0.18
OR Quart2 nd nd nd na nd 25
OR Quart 3 nd nd nd 0.32 nd 1.0
p Value nd nd nd 0.34 nd 1.0
95% CI of nd nd nd 0.032 nd 0.059
OR Quart3 nd nd nd 3.3 nd 17
OR Quart 4 nd nd nd 1.9 nd . . 2.1
p Value nd nd nd 0.42 nd 0.65 0.54 nd 0.56
95% C1 Of nd nd nd 0.40 nd 0.29 0.18 nd 0.18
OR Quart4 nd nd nd 8.6 nd 7.2 25 nd 25
Extracellular matrix protein 1
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1350 1510 1490
1480 1580 1560
434 458 410
0.51 0.87
846 535 945
2280 3060 2100
9 112 7
9 91 7
WO 78253
48hr prior to AKI stage
Cohort 1 Cohort 2
1470 1450
1560 1460
468 364
0.61
535 945
3060 1990
98 6
76 6
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only sCr or UO sCr only
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4
p Value nd nd nd 0.62 nd 0.96 0.97 nd 0.56
95% CI of nd nd nd 0.25 nd 0.19 0.14 nd 0.18
OR Quart4 nd nd nd 10 nd 5.7 7.9 nd 25
WO 78253
Coagulation factor XIII A and B chains
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
10300 11300 10900
12800 12100 12700
6690 5970 3900
3550 881 8160
24900 33300 19200
9 112 7
9 91 7
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
10300 10300 12100
12800 11400 13100
6690 5710 4070
3550 881 8160
24900 33300 19200
9 98 6
9 76 6
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only sCr or UO sCr only sCr or UO sCr only
nd nd 0.53 nd . 0.56
nd nd 0.10 nd . 0.12
nd nd 0.77 nd . 0.60
OR Quart 2
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
p Value
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4 . . .
p Value nd nd nd 0.97 nd 0.67 0.58 nd <0.54
95% C1 Of nd nd nd 0.13 nd 0.23 0.17 nd >0.18
OR Quart4 nd nd nd 7.3 nd 9.8 23 nd na
Vitronectin
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
Median nd nd 118000 111000 118000 87500
104000 121000 85900
45900 33500 49400
0.15 0.010
35100 57400 21800
167000 205000 182000
9 112 7
9 91 7
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
118000 111000 118000 77500
120000 104000 120000 85700
33200 45900 33200 54100
0.18 0.020
57400 35100 57400 21800
205000 167000 205000 182000
98 9 98 6
76 9 76 6
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only sCr or UO sCr only sCr or UO sCr only
nd nd 0.40 0.23
nd nd 0.10 0.11
nd nd 0.36 0.011
nd nd nd 35100 57400
nd nd nd 89% 86%
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
134000 133000 134000
22% 14%
70% 71%
150000 149000 150000
22% 14%
80% 80%
172000 172000
0% 14%
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4
p Value
95% CI of
OR Quart4
Interleukin-17F
1 stage
Cohort 2
0.259
0.233
0.0957
0.75
0.126
0.312
UO only 0hr prior to AKI stage 24hr prior to AKI stage
Cohort 2
0.233
0.250
0.101
0.36
0.101
0.468
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.37 0.38 0.36 0.51 0.50 0.48
0.074
0.79
Cutoff 5 0.339 0.337 0.356 0.339 0.337 0.356
Sens 5 11% 0% 12% 15% 0% 16%
Spec 5 80% 80% 81% 80% 80% 81%
Cutoff 6 0.473 0.410 0.529 0.473 0.410 0.529
Sens 6 0% 0% 0% 0% 0% 0%
Spec 6 90% 90% 90% 90% 90% 90%
OR Quart21.9 >1.1 1.0 1.2 0 0.76
p Value 0.42 <0.96 0.96 0.76 na 0.71
95% CI of 0.41 >0.064 0.19 0.30 na 0.18
OR Quart2 8.9 na 5.7 5.3 na 3.2
OR 1.8 >1.0 1.5 1.6 1.0 1.0
p Value 0.45 <0.98 0.64 0.53 1.0 1.0
95% C1 0f 0.39 >0.062 0.29 0.39 0.060 0.25
OR Quart3 8.4 na 7.3 6.3 17 A .0
OR Quart42.4 >1.1 3.0 1.2 0.97 1.0
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
p Value 0.26 <0.96 0.15 0.76 0.98 0.94
95% CI of 0.53 >0.064 0.67 0.30 0.058 0.26
OR Quart4 11 na 13 5.3 16 A .2
Interleukin-22
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage
Cohort 2
0.806
0.815
0.460
0.39
0.195
1.85
sCr only
Average 1.11 0.570 .
StdeV 1.91 0.228 .
p(t—test)
n (Samp)
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
0.34 0.48
0.17 0.17
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
95% CI of
OR Quart2
OR Quart 3 .
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of
OR Quart4
24hr prior to AKI stage 48hr prior to AKI stage
ort2 Cohort 2 Cohort 1 Cohort 2
Median . 0.984 1.10 0.551
0.550 0.593 0.543
0.36 0.016
0.000162 0.0946 0.000162
1.59 3.76 1.34
9 110 7
9 90 7
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
1.07 0.984 1.07 0.528
1.14 0.988 1.14 0.502
0.554 0.550 0.554 0.495
WO 78253
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
0.44 0.0071
0.0946 0.000162 0.0946 0.000162
3.18 1.59 3.18 1.34
—E§_Z§_7596 9 96 6
9 7s 6
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC nd nd nd 0.44 nd 0.45 0.23 nd 0.17
SE nd nd nd 0.10 nd 0.10 0.11 nd 0.10
p nd nd nd 0.54 nd 0.63 0.012 nd 0.0014
nCohort 1 nd nd nd 110 nd 96 110 nd 96
nCohort 2 nd nd nd 9 nd 9 7 nd 6
0.500 nd 0.000162
71% 83%
8% 0%
0.000162 0.000162
86% 83%
100%
1.34
1.60
1.86
>1.1
<0.96
95% CI of >0.064
OR Quart2 na
p Value <na
95% CI of >na
OR Quart3 na
OR Quart 4 >65
p Value <0.099
95% CI of >070
OR Quart4 na
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
———————
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1.79 2.57 1.37
2.20 3.16 1.46
1.92 2.79 1.15
0.31 0.11
0.000327 0.000136 0.000136
4.97 22.2 3.13
9 110 7
9 90 7
U0 only 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
1.79 2.53 1.54
2.20 3.01 1.51
1.92 2.71 1.25
0.38 0.18
0.000327 36 0.000136
4.97 22.2 3.13
9 96 6
9 75 6
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC nd nd nd 0.39 nd 0.41 0.26 nd 0.29
SE nd nd nd 0.10 nd 0.10 0.11 nd 0.12
p nd nd nd 0.30 nd 0.36 0.033 nd 0.092
. 0.196
78% 83%
% 5%
0.000136 0.196
100% 83%
0.000136 0
100% 100%
1% 0%
3.57
Cutoff 5 nd nd nd 4.47 nd 1 .44
Sens 5 nd nd nd 11% nd 11% 0% nd 0%
Spec 5 nd nd nd 80% nd 80% 80% nd 80%
Cutoff 6 nd nd nd 6.18 nd 5.67 6.18 nd 5.67
Sens 6 nd nd nd 0% nd 0% 0% nd 0%
Spec 6 nd nd nd 90% nd 91% 90% nd 91%
OR Quart 2 nd nd nd 1.0 nd 1.0 >2.2 nd >2.3
p Value nd nd nd 1.0 nd 0.97 <0.52 nd <0.52
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4
p Value . .
95% C1 Of nd nd nd 0.25 nd 0.25 >0.34 nd >0.19
OR Quart4 nd nd nd 10 nd 11 na nd na
Proprotein convertase subtilisin/kexin type 9
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
505000 291000 505000 345000
523000 342000 523000 330000
203000 173000 203000 167000
0.010 0.015
76300 102000 76300 80700
1100000 596000 1100000 529000
112 9 112 7
91 9 91 7
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
A 96000 291000 496000 303000
518000 342000 518000 297000
199000 173000 199000 156000
0.012 0.0090
76300 102000 76300 80700
1000000 596000 1000000 511000
98 9 98 6
76 9 76 6
0hr prior to AKI stage 48hr prior to AKI stage
sCr only
261000 246000 176000
78% 71% 83%
% 9% 2%
102000 176000 176000
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
76300 76300
100% 100%
1% 1%
620000 620000
71% 71%
698000 698000
80% 80%
826000 826000
0% 0%
90% 90%
95% CI of
OR Quart2
p Value
95% CI of
OR Quart3
OR Quart 4
p Value
95% CI of
OR Quart4
Table 7: Comparison of marker levels in EDTA samples ted within 12 hours of
reaching stage R from Cohort 1 (patients that reached, but did not progress beyond,
RIFLE stage R) and from Cohort 2 (patients that reached RIFLE stage I or F).
Estradiol
UO only
Cohort 2 Cohort 1 Cohort 2
nd 1.82 1.84
nd 2.74 5.46
nd 2.04 8.00
nd 0.19
nd 0.642 0.774
nd 7.74 17.4
nd 18 4
nd 18 4
At Enrollment
sCr or UO sCr only UO only
0.64 nd 0.46
0.13 nd 0.17
0.27 nd 0.80
At Enrollment
sCr or UO sCr only UO only
nCohort 1 23 nd 18
t 2 7 nd 4
Cutoff1 1.99 nd 0.979
Sens 1 71% nd 75%
Spec 1 65% nd 17%
Cutoff 2 1.08 nd 0.732
Sens 2 86% nd 100%
Spec 2 22% nd 11%
Cutoff 3 0.732 nd 0.732
Sens 3 100% nd 100%
Spec 3 13% nd 11%
Cutoff 4 3.22 nd 3.24
Sens 4 57% nd 25%
Spec 4 74% nd 72%
Cutoff 5 3.48 nd 4.66
Sens 5 57% nd 25%
Spec 5 83% nd 83%
Cutoff 6 4.89 nd 6.27
Sens 6 14% nd 25%
Spec 6 91% nd 94%
OR Quart 2 0 nd 1.2
p Value na nd 0.89
95% CI of na nd 0.058
OR Quart2 na nd 27
OR Quart 3 0.42 nd 0
p Value 0.52 nd na
95% CI of 0.029 nd na
OR Quart3 6.1 nd na
OR Quart 4 2.5 nd 3.3
p Value 0.40 nd 0.40
95% C1 Of 0.29 nd 0.20
OR Quart4 21 nd 55
Growth/differentiation factor 15
U0 only
Cohort 2 Cohort 1 Cohort 2
nd 2600 1500
nd 2610 2340
nd 1580 2240
nd 0.77
nd 437 750
nd 6010 5600
nd 18 4
nd 18 4
At Enrollment
———uoonly
At Enrollment
sCr or UO sCr only UO only
AUC 0.60 nd 0.40
SE 0.13 nd 0.17
p 0.45 nd 0.56
nCohort 1 23 nd 18
nCohort 2 7 nd 4
Cutoff 1 1740 nd 829
Sens 1 71% nd 75%
Spec 1 43% nd 17%
Cutoff 2 829 nd 660
Sens 2 86% nd 100%
Spec 2 17% nd 11%
Cutoff 3 660 nd 660
Sens 3 100% nd 100%
Spec 3 13% nd 11%
Cutoff 4 3120 nd 3120
Sens 4 43% nd 25%
Spec 4 74% nd 72%
Cutoff 5 3530 nd 3920
Sens 5 43% nd 25%
Spec 5 83% nd 83%
Cutoff 6 4700 nd 5190
Sens 6 43% nd 25%
Spec 6 91% nd 94%
OR Quart 2 0.36 nd 0
p Value 0.45 nd na
95% CI of 0.025 nd na
OR Quart2 5.1 nd na
OR Quart 3 0.42 nd 1.0
p Value 0.52 nd 1.0
95% CI of 0.029 nd 0.048
OR Quart3 6.1 nd 21
OR Quart 4 1.5 nd 3.3
p Value 0.72 nd 0.40
95% CI of 0.17 nd 0.20
0R Q1181rt4 13 nd 55
tein convertase subtilisin/kexin type 9
U0 only
Cohort 2 Cohort 1 Cohort 2
nd 523000 351000
nd 526000 334000
nd 210000 169000
nd 0.10
nd 176000 123000
nd 1000000 511000
nd 18 4
nd 18 4
At ment
sCr or UO sCr only UO only
AUC 0.24 nd 0.19
SE 0.11 nd 0.14
p 0.021 nd 0.030
nCohort 1 23 nd 18
nCohort 2 7 nd 4
Cutoff 1 210000 nd 210000
Sens 1 71% nd 75%
Spec 1 13% nd 17%
Cutoff 2 80700 nd 0
Sens 2 86% nd 100%
Spec 2 0% nd 0%
Cutoff 3 0 nd 0
Sens 3 100% nd 100%
Spec 3 0% nd 0%
Cutoff 4 620000 nd 604000
Sens 4 0% nd 0%
Spec 4 74% nd 72%
Cutoff 5 654000 nd 654000
Sens 5 0% nd 0%
Spec 5 83% nd 83%
Cutoff 6 764000 nd 786000
Sens 6 0% nd 0%
Spec 6 91% nd 94%
OR Quart 2 1.2 nd >1.5
p Value 0.92 nd <0.79
95% CI of 0.059 nd >0.071
OR Quart2 23 nd na
OR Quart 3 1.0 nd >1.2
p Value 1.0 nd <0.91
95% CI of 0.052 nd >0.059
OR Quart3 19 nd na
OR Quart 4 9.3 nd >4.0
p Value 0.089 nd <0.33
95% CI of 0.71 nd >0.25
OR Quart4 120 nd na
Table 8: Comparison of the maximum marker levels in EDTA samples collected from
Cohort 1 (patients that did not progress beyond RIFLE stage 0) and the maximum values
in EDTA samples collected from ts between enrollment and 0, 24 hours, and 48
hours prior to reaching stage F in Cohort 2.
Toll-like receptor 2
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.0648 0.0902 0.0925
0.121 1.96 0.0768
48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0. 1 62 5 .50 0.0649
0.36 0.56
0.00551 0.00107 0.00551
0.496 19.7 0.132
1 stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.0648 0.112 0.0925
0.121 2.20 0.0768
0.00107
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only sCr or UO sCr only
nCohort 1
nCohort 2
0.00402
100%
0.0366 0.0366 0.0182 2
88% 88% 88% 100%
28% 27% 16% 8%
0.00402 0.00107 0.00402 0.00402
p Value 0.10 nd 0.46 0.22 nd <0.45 nd
95% CI of 0.66 nd 0.19 0.38 nd 0.19 >0.20 nd >0.069
OR Quart2 97 nd 37 60 nd 37 na nd na
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
OR Quart 3 .
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of
OR Quart4
Antithrombin-III
24hr prior to AKI stage
Cohort 1 Cohort 2
110000 49300
119000 49300
A 1300 17300
0.0054
—_23000 61300 32000
252000 66600 252000 66600
53 3
53 3
24hr prior to AKI stage
Cohort 1 Cohort 2
103000 49300
114000 49300
33700 17300
0.0022
61300 32000
186000 66600
A 4 3
A 4 3
0hr prior to AKI stage
sCr only
Sens 3 100% nd 100% 100%
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
0% 0% 0% 0%
130000 130000 130000 130000
0% 0% 0% 0%
72% 70% 72% 70%
147000 145000 147000 145000
Cutoff 6 177000 nd 166000 177000 nd 166000
Sens 6 0% nd 0% 0% nd 0%
Spec6 91% nd 91% 91% nd 91%
OR Quart 2 >0 nd >0 >0 nd >0
p Value <na nd <na <na nd <na
95% C1 Of >na nd >na >na nd >na
OR Quart2 na nd na na nd na
OR Quart 3 >0 nd >0 >0 nd >0
p Value <na nd <na <na nd <na
95% C1 Of >na nd >na >na nd >na
OR Quart3 na nd na na nd na
OR Quart 4 >38 nd >45 >38 nd >4.5
p Value <0.27 nd <0.23 <0.27 nd <0.23
95% C10f >O.35 nd >O.39 >O.35 nd >039
OR Quart4 na nd na na nd na
Extracellular matrix protein 1
O—hrprior to AKI stage
Cohort 1 Cohort 2
Median 1530 1450
—mo 1340
Cohort 2
1450
0hr prior to AKI stage 24hr prior to AKI stage
WO 78253
sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.36 nd 0.38 0.36 nd 0.38
0.18
0.51
100%
100%
100%
1710
Cutoff 5 1950 nd 1910 1950 nd 1910
Sens 5 0% nd 0% 0% nd 0%
Spec 5 83% nd 82% 83% nd 82%
Cutoff 6 2270 nd 2230 2270 nd 2230
Sens 6 0% nd 0% 0% nd 0%
Spec 6 92% nd 91% 92% nd 91%
OR Quart2>1.1 nd >1.1 >1.1 nd >1.1
p Value <0.96 nd <0.95 <0.96 nd <0.95
95% Cl Of >0.061 nd >0.061 >0.061 nd >0.061
OR Quart2 na nd na na nd na
OR Quart3>1.1 nd >1.1 >1.1 nd >1.1
p Value <0.96 nd <0.95 <0.96 nd <0.95
95% Cl Of >0.061 nd >0.061 >0.061 nd >0.061
OR Quart3 na nd na na nd na
OR Quart4>1.1 nd >1.2 >1.1 nd >1.2
p Value <0.96 nd <0.90 <0.96 nd <0.90
95% Cl Of >0.061 nd >0.066 >0.061 nd >0.066
OR Quart4 na nd na na nd na
Coagulation factor XIII A and B chains
24hr prior to AKI stage
Cohort 1 Cohort 2
12200 13200
13300 10500
6710 6040
0.48
881 3550
33300 14700
53 3 53 3
———ss 3
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4 >1.1 nd 1.1 >1.1 nd 1.1
p Value <0.96 nd 0.95 <0.96 nd 0.95
95% CI of >0.061 nd 0.060 >0.061 nd 0.060
OR Quart4 na nd 20 na nd 20
WO 78253
Vitronectin
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
Median 120000 35100 120000 35100
122000 22100
Stdev 33100 9630
p—(ttest) 1.9E—5
_62200 21800
24hr prior to AKI stage
Cohort 1 Cohort 2
120000
121000
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only sCr or UO sCr only
0 nd 0 nd
<0.001 nd <0.001 nd
<1.0E—5 nd <1.0E—5 nd
100% 100% 100% 100%
0% 0% 0% 0%
133000 131000 133000 131000
72% 70% 72% 70%
158000 157000 158000 157000
0% 0% 0% 0%
81% 82% 81% 82%
173000 167000 173000 167000
0% 0% 0% 0%
91% 91% 91% 91%
OR Quart 2
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
p Value
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4 . . . .
p Value <0.27 nd <0.23 <0.27 nd <0.23
95% C10f >035 nd >039 >035 nd >039
OR Quart4 na nd na na nd na
Estradiol
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage
24hr prior to AKI stage
Cohort 2
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only sCr or UO sCr only
0.97 nd 0.97
0.065 nd 0.065
3 nd 2.5E—13
3.57 nd 4.47 3.57
100% nd 100% 100%
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage
sCr only
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4
p Value
95% CI of
OR Quart4
Progesterone
1 stage
Cohort 2
31.8
77.0
3.2E—6
.07
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.86 nd 0.86 0.86 nd 0.86
SE 0.14 nd 0.14 0.14 nd 0.14
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4
p Value .
95% C1 0f >0.17 nd >0.17 >0.17 nd >0.17
OR Quart4 na nd na na nd na
24hr prior to AKI stage
Cohort 2
0.000162
0.425
0.736
0.024
0hr prior to AKI stage 24hr prior to AKI stage
—_Cohortz Cohort 1 Cohort 2
0.302 62 0.000162
3.276 1.27 3.76 1.27
52 3
52 3
0hr prior to AKI stage 24hr prior to AK1 stage
Cohort 2
0.000162
0.425
0.736
0.017
0.000162
1.27
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.21 nd 0.22 0.21 nd 0.22
SE 0.16 nd 0.16 0.16 nd 0.16
OR Quart2>1.1 nd >1.2 >1.1 nd >1.2
p Value <0.96 nd <0.90 <0.96 nd <0.90
95% CI of >0.061 nd >0.066 >0.061 nd >0.066
OR Quart2 na nd na na nd na
OR Quart 3 >0 nd >0 >0 nd >0
p Value <na nd <na <na nd <na
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
95% CI of
OR Quart3
OR Quart 4
p Value
95% CI of
OR Quart4 na nd na na nd na
Cohort 2
0.291
0.572
0.752
0.082
0.000136
1.42
UO only 0hr prior to AKI stage 1 stage
Cohort 1 Cohort 2
0.291
0.572
0.752
0.064
0.000136
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
0% nd
3.92 nd
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
95% CI of
OR Quart2
p Value
95% CI of
OR Quart3
OR Quart 4
p Value
95% CI of
OR Quart4
/differentiation factor 15
sCr or UO
1 8
Average 2270 7840
StdeV 1680 1 50
0hr prior to AKI stage
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.99 nd 0.99 0.99 nd 0.99
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
0.036
<1.0E—5
6800
100%
6800
100%
6800
100%
2740
100%
Cutoff 5 3190 nd 3190 3190 nd 3190
Sens 5 100% nd 100% 100% nd 100%
SpecS 81% nd 81% 81% nd 81%
Cutoff 6 4990 nd 4990 4990 nd 1 990
Sens 6 100% nd 100% 100% nd 100%
Spec 6 90% nd 91% 90% nd 91%
OR Quart 2 >0 nd >0 >0 nd >0
p Value <na nd <na <na nd <na
95% C1 Of >na nd >na >na nd >na
OR Quart2 na nd na na nd na
OR Quart 3 >0 nd >0 >0 nd >0
p Value <na nd <na <na nd <na
95% C1 Of >na nd >na >na nd >na
OR Quart3 na nd na na nd na
OR Quart 4 >35 nd >37 >35 nd >3.7
p Value <0.30 nd <0.29 <0.30 nd <0.29
95% C1 0f >0.32 nd >0.32 >0.32 nd >0.32
OR Quart4 na nd na na nd na
Proprotein convertase subtilisin/kexin type 9
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage
Cohort l Cohort 2 Cohort l Cohort 2
102000 A 68000 102000
158000 515000 158000
228000 115000
0.0099
76300 80700
1100000 291000
—§§_§_5353 3
WO 78253
Cohort 2
102000
158000
115000
0.0070
Min 80700
Max 867000 291000 291000
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
76300 76300 76300
100% 100% 100%
2% 2% 2%
667000 668000 667000
72% 70% 72%
786000 786000 786000
81% 82% 81%
835000 834000 835000
0% 0% 0%
91% 91% 91%
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4 >3.8 nd >45 >38 nd >4.5
p Value <0.27 nd <0.23 <0.27 nd <0.23
95% CI of >O.35 nd >O.39 >O.35 nd >039
OR Quart4 na nd na na nd na
Table 9: Comparison of marker levels in urine samples collected from Cohort 1 (patients
that did not progress beyond RIFLE stage 0, R, or I) and in urine samples collected from
Cohort 2 (subjects who progress to RIFLE stage F) at 0, 24 hours, and 48 hours prior to
the subject ng RIFLE stage I.
Toll-like receptor 2
0hr prior to AKI stage 24hr prior to AKI stage
Cohort 2
0hr prior to AKI stage
sCr only
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
1.43
OR Quart 2 0 nd 0 0 nd 0
p Value na nd na na nd na
95% C1 Of na nd na na nd na
OR Quart2 na nd na na nd na
OR Quart 3 2.1 nd 2.1 1.0 nd 2.1
p Value 0.56 nd 0.56 1.0 nd 0.56
95% CI of 0.18 nd 0.18 0.060 nd 0.18
OR Quart3 24 nd 24 17 nd 24
OR Quart43.1 nd 3.2 7.2 nd 5.6
p Value 0.34 nd 0.32 0.076 nd 0.13
95% CI of 0.30 nd 0.32 0.81 nd 0.61
OR Quart4 32 nd 33 64 nd 52
Antithrombin-III
48hr prior to AK1 stage
283
0.0182
6000
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 1 Cohort 2
103 219 nd nd
355 1 140 nd nd
939 2120 nd nd
0.0078 nd nd
WO 78253
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
14.7 nd nd
5660 nd nd
1 1 nd nd
1 1 nd nd
0hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only sCr only
0.61 0.53 0.43
0.21 0.10 0.15
0.60 0.78 0.63
696 696
95% CI of
OR Quart2
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of
Extracellular matrix protein 1
48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
2.05 1.62 1.18
2.23 9.60 2.37
0.86 0.91
0.124 3.61E—6 0.0117
9.15 150 6.00
689 6
283 6
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
0.924 0.507 0.641
0.953 1.73 1.89
0.692 9.79 2.75
0.82 0.97
0.128 3.61E—6 0.272
1.95 150 6.00
8 697 4
8 288 4
24hr prior to AKI stage 48hr prior to AKI stage
Cohort 2 Cohort 1 Cohort 2
2.18 nd nd
2.32 nd nd
2.55 nd nd
0.81 nd nd
9 nd nd
9.15 nd nd
11 nd nd
11 nd nd
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only sCr or UO sCr only sCr or UO sCr only
0.75 0.94 0.70 0.35 0.61
0.090 0.12 0.077 0.12 0.15
nCohort 1
nCohort 2
0.00904
100%
1.09
WO 78253
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr only sCr only UO only
95% CI of
OR Quart2
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of
OR Quart4
Vitronectin
sCr or UO 48hr prior to AKI stage
Cohort 2 Cohort l Cohort 2
UO only 0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
Cohort l Cohort 2 Cohort l Cohort 2 Cohort l Cohort 2
Median 31.0 136 31.0 52.9 nd nd
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
—_140Chort2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
73.4 73.4 83.2 nd nd
133 78.0 nd nd
0. 18 0.81 nd nd
0.0795 5.54 0.0795 2.03E—5 nd nd
_699—11 150 216 11 11
n ) 699 11 nd nd
0hr prior to AKI stage 24hr prior to AKI stage 48hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.48 0.27 0.55 0.55 0.51 0.59 0.29 0.45 nd
SE 0.093 0.20 0.12 0.077 0.10 0.091 0.12 0.15 nd
p 0.85 0.27 0.71 0.54 0.93 0.33 0.079 0.73 nd
nCohort 1 689 697 699 689 697 699 689 697 nd
95% CI of nd
OR Quart2 nd
OR Quart 3 . . . . nd
p Value 0.42 <1.00 na 0.42 1.0 nd
95% CI of 0.089 >0.062 na 0.089 0.14 nd
OR Quart3 2.7 na na 2.7 7.2 nd
OR Quart 4 1.0 >1.0 0.99 1.5 0.99 . . . nd
p Value 0.99 <0.99 0.99 0.52 1.00 0.48 0.34 1.00 nd
95% C1 Of 0.25 >0.063 0.20 0.42 0.14 0.39 0.31 0.062 nd
OR Quart4 4.1 na 5.0 5.5 7.1 7.1 30 16 nd
2012/066152
Interleukin-22
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage
Cohort 2
1.78E—5
000124 00007
StdeV 0.00488 0.0295
p(t—ntest) ‘ .8E— 6
1 stage
Cohort 2
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only sCr or UO sCr only
0.71 11d 0.67 nd
0.12 11d 0.11 nd
0.083 0.12 nd
OR Quart 2
W0 2013/078253 2012/066152
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
p Value
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4 . . . .
p Value <O.56 nd <O.54 <O.31 nd <O.32
95% C1 0f >O.18 nd >O.18 >033 nd >032
OR Quart4 na nd na na nd na
Estradiol
sCr or UO 24hr prior to AKI stage
2012/066152
24hr prior to AKI stage
sCr or UO sCr only UO only
0.68 0.74 0.70
0.12 0.17 0.15
0.15 0.15 0.19
122 126 104
6 3 4
9.25 9.25 9.47
83% 100% 75%
64% 63% 67%
9.25 9.25 4.53
83% 100% 100%
64% 63% 27%
4.53 9.25 4.53
100% 100% 100%
28% 63% 27%
11.0 11.0 10.7
33% 33% 50%
70% 71% 70%
13.3 13.9 12.9
33% 33% 50%
80% 80% 81%
22.4 23.2 22.4
17% 33% 25%
90% 90% 90%
>10 >0 >10
<0.98 <na <0.98
95% C10f >0.062 >na >0.062
OR Quart2 na na 113,
OR Quart 3 >33 >21 >10
p Value <0.31 <0.54 <0.98
95% CI of >033 >0.18 >0.062
OR Quart3 na na na
OR Quart 4 >21 >10 >22
p Value <0.54 <1.0 <0.54
95% CI of >018 >0.060 >0.18
OR Quart4 na na na
Progesterone
sCr or UO 24hr prior to AKI stage
WO 78253
Median 23.5 55.5
p(t—test)
11 (Samp) 104
24hr prior to AKI stage
sCr or UO sCr only UO only
0.62 0.42 0.73
0.13 0.17 0.15
0.34 0.66 0.12
122 126 104
6 3 4
.3 7.23 52.2
83% 100% 75%
43% 10% 78%
.3 7.23 20.3
83% 100% 100%
43% 10% 44%
7.23 7.23 20.3
100% 100% 100%
11% 10% 44%
37.3 40.0 39.6
67% 0% 75%
70% 71% 70%
57.6 57.6 56.1
33% 0% 50%
80% 80% 81%
79.5 79.5 81.6
0% 0% 0%
90% 90% 90%
1.0 >1.1 >1.0
1.0 <0.97 <0.98
2012/066152
24hr prior to AKI stage
sCr or UO sCr only UO only
95% CI of 0.060 >0.064 >0.062
OR Quart2 17 na na
OR Quart 3 1.0 >1.1 >0
p Value 1.0 <0.97 <na
95% C1 Of 0.060 >0.064 >na
OR Quart3 17 na na
OR Quart43.2 >1.1 >3.4
p Value 0.32 <0.97 <0.31
95% CI ofm
OR Quart4 33 na na
24hr prior to AKI stage
24hr prior to AKI stage
sCr or UO sCr only UO only
0.63 0.55 0.66
0.13 0.17 0.15
0.30 0.76 0.30
122 126 104
6 3 4
2.67 1.19 3.96
83% 100% 75%
39% 27% 48%
2.67 1.19 2.67
83% 100% 100%
39% 27% 39%
1.19 1.19 2.67
100% 100% 100%
28% 27% 39%
6.44 6.52 6.52
50% 33% 50%
70% 71% 70%
8.06 8.39 8.39
50% 33% 50%
80% 80% 81%
11.7 12.5 12.5
17% 0% 0%
90% 90% 90%
>33 >10 >22
<0.31 <0.98 <0.54
95% CI ofm
OR Quart2 na na na
OR Quart 3 >0 >l.O >0
p Value <na <0.98 <na
95% C1 Of >na >0.062 >na
OR Quart3 na na na
OR >3.3 >l.O >22
p Value <0.31 <1.0 <0.54
95% CI ofm
OR Quart4 na na na
Table 10: Comparison of marker levels in EDTA samples collected from Cohort 1
(patients that did not progress beyond RIFLE stage 0, R, or I) and in EDTA samples
collected from Cohort 2 (subjects who progress to RIFLE stage F) at 0, 24 hours, and 48
hours prior to the subject reaching RIFLE stage I.
Toll-like receptor 2
sCr or UO 0hr prior to AKI stage 24hr prior to AKI stage
Cohort 1 Cohort 2 Cohort 2
Median 0.0770 0.0681 0.0648
WO 78253
Cohort 2
0.121
0.162
0.35
0.00551
Cohort 2
0.0648
0.121
0.162
0.33
0.00551
0.496
0hr prior to AKI stage
sCr only
0.00402
p Value 0.54 nd 0.56 0.32
95% CI of 0.18 nd 0.18 0.32
2012/066152
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
OR Quart2
OR Quart 3 .
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of
OR Quart4 17 nd 17 17 nd
Antithrombin-III
Cohort 1
105000
111000
24hr prior to AKI stage
sCr or UO sCr only UO only
0.027 nd 0.031
0.081 nd 0.087
6.2E—9 nd 6.5E—8
128 nd 112
2 nd 2
36200 nd 36200
100% nd 100%
1% nd 1%
36200 nd 36200
100% nd 100%
1% nd 1%
36200 nd 36200
WO 78253
24hr prior to AKI stage
sCr or UO sCr only UO only
Sens 3 100% nd 100%
Spec 3 1% nd 1%
Cutoff 4 123000 nd 121000
Sens 4 0% nd 0%
Spec 4 70% nd 71%
Cutoff 5 142000 nd 141000
Sens 5 0% nd 0%
Spec 5 80% nd 81%
Cutoff 6 164000 nd 151000
Sens 6 0% nd 0%
Spec 6 91% nd 90%
OR Quart 2 >0 nd >0
p Value <na nd <na
95% Cl Of >na nd >na
OR Quart2 113 nd na
OR Quart 3 >0 nd >0
p Value <na nd <na
95% Cl Of >na nd >na
OR Quart3 na nd na
OR Quart 4 >22 nd >2.2
p Value <0.53 nd <0.52
95% CI of >019 nd >0.19
OR Quart4 na nd na
Extracellular matrix protein 1
24hr prior to AKI stage
Cohort 1 Cohort 2
2012/066152
24hr prior to AKI stage
sCr or UO sCr only UO only
0.23 nd 0.25
0.20 nd 0.20
0.18 nd 0.23
128 nd 112
2 nd 2
779 nd 779
100% nd 100%
2% nd 3%
779 nd 779
100% nd 100%
2% nd 3%
779 nd 779
100% nd 100%
2% nd 3%
1720 nd 1720
0% nd 0%
70% nd 71%
1950 nd 1910
0% nd 0%
81% nd 80%
2240 nd 2230
0% nd 0%
91% nd 90%
>0 nd >0
<na nd <na
95% CI Of >na nd >na
OR Quart2 113 nd na
OR Quart 3 >10 nd >1.0
p Value <0.98 nd <0.98
95% CI of >0.062 nd >0.062
OR Quart3 na nd na
OR Quart4>1.1 nd >1.1
p Value <0.97 nd <0.96
95% CI of >0.064 nd >0.064
OR Quart4 na nd na
Vitronectin
sCr or UO 24hr prior to AKI stage
WO 78253
Min 57400
Max 205000 A 0400
n (Samp) 112 2
24hr prior to AKI stage
sCr or UO sCr only UO only
AUC 0 nd 0
SE <0.001 nd <0.001
p <1.0E—5 nd <1.0E—5
nCohort 1 128 nd 112
nCohort 2 2 nd 2
Cutoff 1 0 nd 0
Sens 1 100% nd 100%
Spec 1 0% nd 0%
Cutoff 2 0 nd 0
Sens 2 100% nd 100%
Spec 2 0% nd 0%
Cutoff 3 0 nd 0
Sens 3 100% nd 100%
Spec 3 0% nd 0%
Cutoff 4 133000 nd 132000
Sens 4 0% nd 0%
Spec 4 70% nd 71%
Cutoff 5 150000 nd 149000
Sens 5 0% nd 0%
Spec 5 80% nd 80%
Cutoff 6 172000 nd 167000
Sens 6 0% nd 0%
Spec 6 91% nd 90%
OR Quart 2 >0 nd >0
p Value <na nd <na
95% Cl Of >na nd >na
OR Quart2 na nd na
OR Quart 3 >0 nd >0
p Value <na nd <na
95% Cl Of >na nd >na
OR Quart3 na nd na
OR Quart 4 >22 nd >2.2
p Value <0.53 nd <0.52
95% CI of >019 nd >0.19
OR Quart4 na nd na
Interleukin-22
2012/066152
1 stage
Cohort 2
0hr prior to AKI stage 24hr prior to AKI stage
sCr or UO sCr only UO only sCr or UO sCr only UO only
AUC 0.35 nd 0.33 0.54 nd 0.53
SE 0.12 nd 0.12 0.11 nd 0.11
p 0.24 nd 0.18 0.71 nd 0.81
0.413
0.274
0.195
100%
Cutoff4 0.881 nd 0.893 0.881 nd 0.893
Sens 4 17% nd 17% 62% nd 62%
Spec4 71% nd 71% 71% nd 71%
Cutoff 5 1.07 nd 1.07 1.07 nd 1.07
Sens 5 17% nd 17% 25% nd 25%
Spec 5 80% nd 80% 80% nd 80%
Cutoff 6 1.52 nd 1.60 1.52 nd 1.60
Sens 6 0% nd 0% 12% nd 12%
Spec6 91% nd 91% 91% nd 91%
OR Quart 2 1.0 nd 1.0 0 nd 0
p Value 0.98 nd 1.0 na nd na
0hr prior to AKI stage 24hr prior to AKI stage
sCr only sCr only
95% CI of
OR Quart2
OR Quart 3
p Value
95% CI of
OR Quart3
OR Quart 4 .
p Value
95% CI of 0.18 nd 0.18 0.19 nd
OR Quart4 25 nd 24 5.4 nd
24hr prior to AKI stage
sCr or UO sCr only UO only
0.99 nd 0.99
0.044 nd 0.048
<1.0E—5 nd <1.0E—5
126 nd 110
2 nd 2
.8 nd 10.8
100% nd 100%
99% nd 99%
.8 nd 10.8
100% nd 100%
99% nd 99%
2012/066152
24hr prior to AKI stage
sCr or UO sCr only UO only
Cutoff 3 10.8 nd 10.8
Sens 3 100% nd 100%
Spec 3 99% nd 99%
Cutoff 4 1.96 nd 2.01
Sens 4 100% nd 100%
Spec 4 71% nd 70%
Cutoff 5 2.49 nd 2.94
Sens 5 100% nd 100%
Spec 5 80% nd 80%
Cutoff 6 4.07 nd 4.47
Sens 6 100% nd 100%
Spec 6 90% nd 90%
OR Quart 2 >0 nd >0
p Value <na nd <na
95% CI of >na nd >na
OR Quart2 11a nd na
OR Quart 3 >0 nd >0
p Value <na nd <na
95% CI of >na nd >na
OR Quart3 na nd na
OR Quart 4 >21 nd >2.2
p Value <0.54 nd <0.54
95% CI of >018 nd >0.18
OR Quart4 na nd na
Progesterone
2012/066152
24hr prior to AKI stage
sCr or UO sCr only UO only
0.99 nd 0.99
0.054 nd 0.048
<1.0E—5 nd <1.0E—5
126 nd 110
2 nd 2
31.4 nd 31.4
100% nd 100%
98% nd 98%
31.4 nd 31.4
100% nd 100%
98% nd 98%
31.4 nd 31.4
100% nd 100%
98% nd 98%
6.56 nd 6.51
100% nd 100%
71% nd 70%
8.03 nd 8.03
100% nd 100%
80% nd 80%
.4 nd 10.4
100% nd 100%
90% nd 90%
>0 nd >0
<na nd <na
95% CI Of >na nd >na
OR Quart2 11a nd na
OR Quart 3 >0 nd >0
p Value <na nd <na
95% CI Of >na nd >na
OR Quart3 na nd na
OR Quart 4 >21 nd >2.2
p Value <0.54 nd <0.54
95% CI of >018 nd >0.18
OR Quart4 na nd na
—24hrprior to AKI stage
Cohort 1 Cohort 2
Median 2.57 0.858
Average 3.10 0.858
StdeV 2.71 0. 801
p _ 0.25
0.000136 0.291
Max 22.2 1.42
11 (Samp) __
2012/066152
24hr prior to AKI stage
sCr or UO sCr only UO only
0.16 nd 0.17
0.18 nd 0.18
0.052 nd 0.064
126 nd 110
2 nd 2
0.256 nd 0.256
100% nd 100%
7% nd 8%
0.256 nd 0.256
100% nd 100%
7% nd 8%
0.256 nd 0.256
100% nd 100%
7% nd 8%
3.68 nd 3.39
0% nd 0%
71% nd 70%
4.47 nd 4.31
0% nd 0%
80% nd 80%
6.18 nd 5.44
0% nd 0%
90% nd 90%
>0 nd >0
<na nd <na
95% CI Of >na nd >na
OR Quart2 11a nd na
OR Quart 3 >10 nd >1.0
p Value <0.98 nd <0.98
95% CI of >0.062 nd >0.062
OR Quart3 na nd na
OR Quart4>1.0 nd >1.0
24hr prior to AKI stage
sCr or UO sCr only UO only
p Value <0.98 nd <0.98
95% CI of >0.062 nd >0.062
OR Quart4 na nd na
Growth/differentiation factor 15
24hr prior to AKI stage
24hr prior to AKI stage
sCr or UO sCr only UO only
1.0 nd 1.0
0 nd 0
nd <1.0E—5
126 nd 110
2 nd 2
7790 nd 7790
100% nd 100%
100% nd 100%
7790 nd 7790
100% nd 100%
100% nd 100%
7790 nd 7790
100% nd 100%
100% nd 100%
2840 nd 3100
100% nd 100%
71% nd 70%
3750 nd 3880
WO 78253
24hr prior to AKI stage
sCr or UO sCr only UO only
100% nd 100%
80% nd 80%
5190 nd 5190
100% nd 100%
90% nd 90%
>0 nd >0
<na nd <na
95% Cl Of >na nd >na
OR Quart2 11a nd na
OR Quart 3 >0 nd >0
p Value <na nd <na
95% CI of >na nd >na
OR Quart3 na nd na
OR Quart 4 >2.1 nd >2.2
p Value <0.54 nd <0.54
95% CI of >018 nd >0.18
OR Quart4 na nd na
Proprotein convertase subtilisin/kexin type 9
24hr prior to AKI stage
24hr prior to AKI stage
sCr or UO sCr only UO only
0.074 nd 0.080
0.13 nd 0.13
9.8E—4 nd 0.0017
128 nd 112
24hr prior to AKI stage
sCr or UO sCr only UO only
nCohort 2 2 nd 2
Cutoff 1 76300 nd 76300
Sens l 100% nd 100%
Spec 1 1% nd 1%
Cutoff 2 76300 nd 76300
Sens 2 100% nd 100%
Spec 2 1% nd 1%
Cutoff 3 76300 nd 76300
Sens 3 100% nd 100%
Spec 3 1% nd 1%
Cutoff 4 598000 nd 598000
Sens 4 0% nd 0%
Spec 4 70% nd 71%
Cutoff 5 676000 nd 676000
Sens 5 0% nd 0%
Spec 5 80% nd 80%
Cutoff 6 820000 nd 814000
Sens 6 0% nd 0%
Spec 6 91% nd 90%
OR Quart 2 >0 nd >0
p Value <na nd <na
95% CI Of >na nd >na
OR Quart2 na nd na
OR Quart 3 >0 nd >0
p Value <na nd <na
95% CI Of >na nd >na
OR Quart3 na nd na
OR Quart 4 >22 nd >2.2
p Value <0.53 nd <0.52
95% CI of >019 nd >0.19
OR Quart4 na nd na
Table 11: ison of marker levels in enroll urine samples collected from Cohort 1
(patients that did not progress beyond RIFLE stage 0 or R within 48hrs) and in enroll
urine samples collected from Cohort 2 (subjects reaching RIFLE stage I or F within
48hrs). Enroll samples from patients already at RIFLE stage I or F were included in
Cohort 2.
Antithrombin-III
UO only
Cohort 2 Cohort 1 Cohort 2
172 89.5 164
707 322 97s
StdeV 1630 1680 935 1730
—_0347 . 14.7 0.0182 0.347
UO only
Cohort 2 Cohort 1 Cohort 2
6000 6000 6000
12 188 47
12 188 47
At Enrollment
sCr or UO sCr only UO only
AUC 0.65 0.63 0.63
SE 0.045 0.088 0.048
p 8.7E—4 0.13 0.0064
nCohort 1 190 227 188
t 2 54 12 47
Cutoff 1 89.6 114 84.9
Sens 1 70% 75% 70%
Spec 1 52% 56% 48%
Cutoff 2 56.5 56.5 54.2
Sens 2 81% 83% 81%
Spec 2 35% 32% 31%
Cutoff 3 42.4 54.2 21.8
Sens 3 91% 92% 91%
Spec 3 24% 30% 13%
Cutoff 4 152 172 158
Sens 4 57% 50% 51%
Spec 4 70% 70% 70%
Cutoff 5 223 280 231
Sens 5 37% 33% 36%
Spec 5 80% 80% 80%
Cutoff 6 435 600 472
Sens 6 24% 17% 28%
Spec 6 90% 90% 90%
OR Quart 2 2.5 2.0 2.2
p Value 0.087 0.58 0.14
95% CI of 0.88 0.18 0.77
OR Quart2 7.0 23 6.4
OR Quart 3 2.7 4.1 2.0
p Value 0.057 0.21 0.21
95% CI of 0.97 0.45 0.68
OR Quart3 7.7 38 5.8
OR Quart4 4.8 5.3 3.8
p Value 0.0020 0.13 0.0096
95% CI of 1.8 0.60 1.4
OR Quart4 13 47 10
Extracellular matrix protein 1
sCr or UO sCr only UO only
Cohort 1 Cohort 2 Cohort 1 Cohort 2 Cohort 1 Cohort 2
Median 0.346 1.26 0.392 1.26 0.371 1.12
——3.58 3.19 0.923 3.64
UO only
Cohort 2 Cohort 1 Cohort 2
.16 1.59 8.75
0.14 7.9E—5
0.00419 0.000528 0.00419
14.4 14.4 57.7
12 188 47
12 188 47
At ment
sCr or UO sCr only UO only
AUC 0.69 0.67 0.66
SE 0.043 0.088 0.047
p 1.2E—5 0.055 4.6E—4
nCohort 1 190 227 188
nCohort 2 54 12 47
Cutoff 1 0.411 0.689 0.396
Sens 1 70% 75% 70%
Spec 1 56% 61% 54%
Cutoff 2 0.238 0.362 0.182
Sens 2 81% 83% 81%
Spec 2 41% 47% 36%
Cutoff 3 0.0936 0.348 0.0837
Sens 3 91% 92% 91%
Spec 3 19% 47% 18%
Cutoff4 0.857 1.08 0.995
Sens 4 56% 58% 51%
Spec 4 70% 70% 70%
Cutoff 5 1.28 1.82 1.48
Sens 5 50% 25% 45%
Spec 5 80% 80% 80%
Cutoff 6 2.15 2.82 2.21
Sens 6 35% 17% 38%
Spec 6 90% 90% 90%
OR Quart 2 1.3 2.0 1.3
p Value 0.59 0.58 0.62
95% CI of 0.46 0.18 0.45
OR QuartZ 3.8 23 3.8
OR Quart 3 1.9 3.1 1.5
p Value 0.22 0.34 0.46
95% CI of 0.69 0.31 0.52
OR Quart3 5.2 30 4.2
OR Quart 4 5.7 6.4 4.0
p Value 2.6E—4 0.089 0.0042
95% CI of 2.2 0.75 1.6
OR Quart4 15 55 10
Coagulation factor XIII A and B chains
—— uomy
Cohort 1 Cohort 2 Cohort 2 Cohort 1 Cohort 2
——15.5 . 16.7 6.13 17.1
44.7 8.20 31.3
0.062 2.9E—5
0.000455 0.000120 0.000145
158 58.0 158
12 188 47
12 188 47
At Enrollment
sCr or UO sCr only UO only
AUC 0.61 0.49 0.62
SE 0.045 0.086 0.048
p 0.014 0.88 0.014
nCohort 1 190 227 188
nCohort 2 54 12 47
Cutoff1 2.52 1.89 2.73
Sens 1 70% 75% 70%
Spec 1 45% 34% 47%
Cutoff 2 0.976 0.956 0.956
Sens 2 81% 83% 81%
Spec 2 23% 21% 22%
Cutoff 3 0.000443 0.701 27
Sens 3 91% 92% 91%
Spec 3 5% 19% 4%
Cutoff4 6.03 7.34 5.99
Sens 4 46% 25% 51%
Spec 4 70% 70% 70%
Cutoff5 8.96 11.3 8.96
Sens 5 37% 17% 40%
Spec 5 80% 80% 80%
Cutoff 6 18.1 20.9 18.1
Sens 6 24% 8% 28%
Spec 6 90% 90% 90%
OR Quart 2 0.69 2.1 0.40
p Value 0.46 0.41 0.11
95% CI of 0.26 0.36 0.13
OR Quart2 1.8 12 1.2
OR Quart 3 1.5 1.5 1.1
p Value 0.38 0.65 0.85
95% CI of 0.62 0.25 0.44
OR Quart3 3.6 9.5 2.7
OR Quart 4 2.2 1.6 2.0
p Value 0.064 0.64 0.10
95% CI of 0.95 0.25 0.86
2012/066152
At Enrollment
sCroon
OR Quart4 5.2 9.7 4.8
Vitronectin
UO only
Cohort 2 Cohort 1 Cohort 2
29.5 23.0 49.4
89.7 48.4 118
177 93.4 162
0.38 1.3E—4
2.03E—5 0.550 2.03E—5
641 750 641
12 188 47
12 188 47
At Enrollment
sCr or UO sCr only UO only
AUC 0.66 0.52 0.68
SE 0.044 0.087 0.046
p 1.9E—4 0.78 7.8E—5
nCohort 1 190 227 188
nCohort 2 54 12 47
Cutoff 1 24.8 14.1 28.4
Sens 1 70% 75% 70%
Spec 1 54% 30% 60%
Cutoff 2 16.0 8.80 18.5
Sens 2 81% 83% 81%
Spec 2 37% 19% 44%
Cutoff 3 7.43 6.91 7.43
Sens 3 91% 92% 91%
Spec 3 19% 15% 19%
Cutoff4 37.7 45.7 37.7
Sens 4 54% 33% 57%
Spec 4 70% 70% 70%
Cutoff 5 50.6 64.3 53.9
Sens 5 46% 33% 47%
Spec 5 80% 80% 80%
Cutoff 6 98.1 138 98.1
Sens 6 28% 8% 32%
Spec 6 90% 90% 90%
OR Quart 2 1.3 0.98 1.4
p Value 0.61 0.98 0.59
95% CI of 0.47 0.19 0.44
OR QuartZ 3.6 5.1 4.2
OR Quart 3 1.6 0.64 2.0
p Value 0.33 0.64 0.21
95% CI of 0.61 0.10 0.68
OR Quart3 4.3 4.0 5.8
At Enrollment
sCr or UO sCr only UO only
OR Quart 4 4.3 1.3 5.2
p Value 0.0016 0.71 0.0013
95% CI of 1.7 0.29 1.9
OR Quart4 11 6.2 14
UO only
Cohort 2 Cohort 1 Cohort 2
2.60 3.37 3.41
3.40 4.67 3.96
1.99 3.90 2.60
0.61 0.64
1.94 0.569 0.792
.67 19.3 8.37
3 42 7
3 42 7
At Enrollment
sCr or UO sCr only UO only
AUC 0.53 0.44 0.49
SE 0.11 0.18 0.12
p 0.77 0.72 0.91
t 1 50 55 42
nCohort 2 8 3 7
Cutoff1 2.59 1.87 2.59
Sens 1 75% 100% 71%
Spec 1 38% 25% 33%
Cutoff 2 1.87 1.87 1.78
Sens 2 88% 100% 86%
Spec 2 26% 25% 21%
Cutoff 3 0.757 1.87 0.757
Sens 3 100% 100% 100%
Spec 3 8% 25% 7%
Cutoff4 5.32 5.68 5.68
Sens 4 38% 0% 29%
Spec 4 70% 71% 71%
Cutoff 5 6.52 6.52 6.56
Sens 5 12% 0% 14%
Spec 5 80% 80% 81%
Cutoff 6 7.57 8.37 7.57
Sens 6 12% 0% 14%
Spec 6 90% 91% 90%
OR Quart 2 2.0 >1.2 1.1
p Value 0.59 <0.92 0.93
95% CI of 0.16 >0.065 0.13
OR Quart2 25 na 9.3
OR Quart 3 3.5 >2.3 0.50
At ment
sCr or UO sCr only UO only
p Value 0.30 <0.51 0.59
95% CI of 0.32 >0.19 0.039
OR Quart3 39 na 6.4
OR Quart 4 2.0 >0 1.1
p Value 0.59 <na 0.93
95% CI of 0.16 >na 0.13
OR Quart4 25 na 9.3
UO only
Cohort 2 Cohort 1 Cohort 2
1.20 4.21 3.02
2.11 5.50 4.17
2.27 5.20 3.26
0.27 0.52
0.443 0.00501 0.443
4.69 18.8 10.1
3 42 7
3 42 7
At Enrollment
sCr or UO sCr only UO only
AUC 0.44 0.33 0.47
SE 0.11 0.18 0.12
p 0.60 0.34 0.78
nCohort 1 50 55 42
nCohort 2 8 3 7
Cutoff 1 1.20 0.428 2.39
Sens 1 75% 100% 71%
Spec 1 26% 18% 33%
Cutoff 2 1.01 0.428 1.20
Sens 2 88% 100% 86%
Spec 2 26% 18% 29%
Cutoff 3 0.428 0.428 0.428
Sens 3 100% 100% 100%
Spec 3 20% 18% 21%
Cutoff4 5.62 6.00 6.52
Sens 4 25% 0% 14%
Spec 4 70% 71% 71%
Cutoff 5 8.06 8.06 8.89
Sens 5 12% 0% 14%
Spec 5 80% 80% 81%
Cutoff 6 12.8 12.8 13.5
Sens 6 0% 0% 0%
Spec 6 90% 91% 90%
OR Quart 2 0.50 >1.2 2.4
p Value 0.59 <0.92 0.50
At Enrollment
sCr or UO sCr only UO only
95% CI of 0.040 >0.065 0.19
OR Quart2 6.2 na 31
OR Quart 3 2.4 >1.1 4.0
p Value 0.37 <0.96 0.26
95% CI of 0.36 >0.061 0.35
OR Quart3 15 na 45
OR Quart 4 0.50 >1.2 1.1
p Value 0.59 <0.92 0.95
95% CI of 0.040 >0.065 0.061
OR Quart4 6.2 na 20
Proprotein convertase isin/kexin type 9
U0 only
Cohort 2 Cohort 1 Cohort 2
3180 379 1430
2420 1100 1900
1390 1980 1220
0.37 0.31
813 70.6 521
3260 11000 3260
3 42 7
3 42 7
At Enrollment
sCr or UO sCr only UO only
AUC 0.80 0.84 0.81
SE 0.097 0.15 0.10
p 0.0019 0.022 0.0023
nCohort 1 50 55 42
nCohort 2 8 3 7
Cutoff 1 897 804 919
Sens 1 75% 100% 71%
Spec 1 76% 69% 76%
Cutoff 2 804 804 897
Sens 2 88% 100% 86%
Spec 2 74% 69% 76%
Cutoff 3 479 804 479
Sens 3 100% 100% 100%
Spec 3 60% 69% 60%
Cutoff 4 686 897 745
Sens 4 88% 67% 86%
Spec 4 70% 71% 71%
Cutoff 5 1260 1300 1260
Sens 5 50% 67% 57%
Spec 5 80% 80% 81%
Cutoff 6 3040 3080 3040
Sens 6 38% 67% 43%
WO 78253
At Enrollment
sCr or UO sCr only UO only
Spec 6 90% 91% 90%
OR Quart 2 >0 >0 >0
p Value <na <na <na
95% C1 Of >na >na >na
OR Quart2 na na na
OR Quart 3 >5.6 >1.1 >4.0
p Value <0.15 <0.96 <0.26
95% CI of >054 >0.061 >0.35
OR Quart3 na na na
OR Quart 4 >5.1 >22 >53
p Value <0.17 <0.55 <0.16
95% CI of >050 >0.17 >0.51
OR Quart4 na na na
Table 12: Comparison of marker levels in enroll EDTA samples collected from Cohort 1
(patients that did not progress beyond RIFLE stage 0 or R within 48hrs) and in enroll
EDTA samples collected from Cohort 2 (subjects reaching RIFLE stage I or F within
48hrs). Enroll samples from patients already at stage I or F were included in Cohort 2.
Antithrombin-III
UO only
Cohort 2 Cohort 1 Cohort 2
nd 105000 86000
nd 110000 87900
nd 35300 34600
nd 0.085
nd 36200 32000
nd 186000 146000
nd 41 10
nd 41 10
At Enrollment
sCr or UO sCr only UO only
0.32 nd 0.33
0.10 nd 0.10
p 0.072 nd 0.094
t 1 47 nd 41
nCohort 2 10 nd 10
Cutoff 1 81300 nd 81300
Sens 1 70% nd 70%
Spec 1 23% nd 24%
Cutoff 2 49300 nd 49300
Sens 2 80% nd 80%
Spec 2 2% nd 2%
Cutoff 3 36200 nd 36200
Sens 3 90% nd 90%
At Enrollment
sCr or UO sCr only UO only
Spec 3 2% nd 2%
Cutoff 4 120000 nd 117000
Sens 4 20% nd 20%
Spec 4 70% nd 71%
Cutoff 5 147000 nd 145000
Sens 5 0% nd 10%
Spec 5 81% nd 80%
Cutoff 6 164000 nd 163000
Sens 6 0% nd 0%
Spec 6 91% nd 90%
OR Quart 2 0.50 nd 0.46
p Value 0.59 nd 0.55
95% CI of 0.040 nd 0.036
OR Quart2 6.2 nd 5.8
OR Quart 3 2.6 nd 2.4
p Value 0.32 nd 0.36
95% CI of 0.39 nd 0.36
OR Quart3 17 nd 17
OR Quart4 1.8 nd 1.8
p Value 0.57 nd 0.55
95% CI of 0.25 nd 0.25
OR Quart4 13 nd 13
Extracellular matrix protein 1
—— uomy
Cohort 1 Cohort 2 Cohort 2 Cohort 1 Cohort 2
nd woo woo
341 nd 470 341
nd 1.00
nd 535 945
nd 2570 1990
nd 41 10
nd 41 10
At Enrollment
sCr or UO sCr only UO only
AUC 0.51 nd 0.52
SE 0.10 nd 0.10
p 0.95 nd 0.85
t 1 47 nd 41
nCohort 2 10 nd 10
Cutoff1 1310 nd 1310
Sens 1 70% nd 70%
Spec 1 43% nd 46%
Cutoff2 1170 nd 1170
Sens 2 80% nd 80%
At Enrollment
sCr or UO sCr only UO only
Spec 2 23% nd 24%
Cutoff3 1110 nd 1110
Sens 3 90% nd 90%
Spec 3 21% nd 22%
Cutoff4 1710 nd 1710
Sens 4 40% nd 40%
Spec 4 70% nd 71%
Cutoff 5 1950 nd 1840
Sens 5 10% nd 20%
Spec 5 81% nd 80%
Cutoff 6 2240 nd 2150
Sens 6 0% nd 0%
Spec 6 91% nd 90%
OR Quart 2 0.28 nd 0.91
p Value 0.30 nd 0.93
95% CI of 0.026 nd 0.11
OR QuartZ 3.1 nd 7.7
OR Quart 3 1.0 nd 1.5
p Value 1.0 nd 0.69
95% CI of 0.16 nd 0.20
OR Quart3 6.1 nd 11
OR Quart 4 0.92 nd 1.5
p Value 0.92 nd 0.69
95% CI of 0.15 nd 0.20
OR Quart4 5.5 nd 11
ation factor XIII A and B chains
UO only
Cohort 2 Cohort 1 Cohort 2
nd 11200 10000
nd 11800 11400
nd 6580 5310
nd 0.84
nd 881 3550
nd 33300 21300
nd 41 10
nd 41 10
At Enrollment
sCr or UO sCr only UO only
0.46 nd 0.49
0.10 nd 0.10
0.69 nd 0.89
47 nd 41
nd 10
9230 nd 9230
70% nd 70%
At ment
sCr or UO sCr only UO only
Spec 1 38% nd 41%
Cutoff 2 7990 nd 7990
Sens 2 80% nd 80%
Spec 2 28% nd 29%
Cutoff 3 7150 nd 7150
Sens 3 90% nd 90%
Spec 3 23% nd 24%
Cutoff 4 14000 nd 13500
Sens 4 20% nd 20%
Spec 4 70% nd 71%
Cutoff 5 16500 nd 16200
Sens 5 20% nd 20%
Spec 5 81% nd 80%
Cutoff 6 22500 nd 19800
Sens 6 0% nd 10%
Spec 6 91% nd 90%
OR Quart 2 0.50 nd 1.0
p Value 0.59 nd 1.0
95% CI of 0.040 nd 0.12
OR Quart2 6.2 nd 8.4
OR Quart 3 3.6 nd 2.4
p Value 0.17 nd 0.36
95% CI of 0.57 nd 0.36
OR Quart3 23 nd 17
ORQuart4 1.1 nd 1.1
p Value 0.94 nd 0.93
95% CI of 0.13 nd 0.13
OR Quart4 8.9 nd 9.3
Vitronectin
UO only
Cohort 2 Cohort 1 Cohort 2
00 002000 07000
Average 114000 83300 nd 112000 83300
p(t—test) . nd 0.018
Min nd 57400 21800
Max nd 177000 153000
11 (Samp) nd 41 10
11 (Patient) nd 41 10
At Enrollment
sCr or UO sCr only UO only
0.27 nd 0.29
0.097 nd 0.099
0.020 nd 0.030
47 nd 41
At Enrollment
sCr or UO sCr only UO only
t 2 10 nd 10
Cutoff 1 60700 nd 60700
Sens 1 70% nd 70%
Spec 1 4% nd 5%
Cutoff 2 60500 nd 60500
Sens 2 80% nd 80%
Spec 2 4% nd 5%
Cutoff 3 21800 nd 21800
Sens 3 90% nd 90%
Spec 3 0% nd 0%
Cutoff 4 125000 nd 123000
Sens 4 10% nd 10%
Spec 4 70% nd 71%
Cutoff 5 145000 nd 143000
Sens 5 10% nd 10%
Spec 5 81% nd 80%
Cutoff 6 158000 nd 154000
Sens 6 0% nd 0%
Spec 6 91% nd 90%
OR Quart 2 2.3 nd 2.2
p Value 0.51 nd 0.55
95% CI of 0.19 nd 0.17
OR Q11th 29 nd 28
OR Quart 3 2.3 nd 3.6
p Value 0.51 nd 0.30
95% CI of 0.19 nd 0.32
OR Quart3 29 nd 40
OR Quart 4 7.8 nd 6.0
p Value 0.081 nd 0.14
95% CI of 0.78 nd 0.56
OR Quart4 78 nd 64
U0 only
Cohort 2 Cohort 1 Cohort 2
nd 0.946 0.578
nd 1.01 0.674
nd 0.650 0.531
nd 0.14
nd 0.000227 0.000162
nd 4.25 1.59
nd 41 10
nd 41 10
At Enrollment
sCr or UO sCr only UO only
At Enrollment
sCr or UO sCr only UO only
SE 0.099 nd 0.10
p 0.039 nd 0.046
nCohort 1 47 nd 41
t 2 10 nd 10
Cutoff 1 0.500 nd 0.500
Sens 1 70% nd 70%
Spec 1 15% nd 15%
Cutoff 2 0.424 nd 0.424
Sens 2 80% nd 80%
Spec 2 11% nd 10%
Cutoff 3 0 nd 0
Sens 3 100% nd 100%
Spec 3 0% nd 0%
Cutoff4 1.18 nd 1.17
Sens 4 20% nd 20%
Spec 4 70% nd 71%
Cutoff 5 1.32 nd 1.27
Sens 5 20% nd 20%
Spec 5 81% nd 80%
Cutoff 6 1.60 nd 1.54
Sens 6 0% nd 10%
Spec 6 91% nd 90%
OR Quart 2 0.50 nd 0.46
p Value 0.59 nd 0.55
95% CI of 0.040 nd 0.036
OR Quart2 6.2 nd 5.8
OR Quart 3 0 nd 0.46
p Value na nd 0.55
95% CI of na nd 0.036
OR Quart3 na nd 5.8
OR Quart 4 6.5 nd 5.5
p Value 0.044 nd 0.076
95% CI of 1.1 nd 0.84
OR Quart4 40 nd 36
UO only
Cohort 2 Cohort 1 Cohort 2
nd 2.35 0.996
nd 2.68 1.46
nd 1.92 1.62
nd 0.070
nd 0.0578 0.000136
nd 7.82 4.15
A 7 10 nd 41 10
nd 41 10
At Enrollment
sCr or UO sCr only UO only
AUC 0.29 nd 0.30
SE 0.099 nd 0.10
p 0.034 nd 0.052
nCohort 1 47 nd 41
nCohort 2 10 nd 10
1 0.196 nd 0.196
Sens 1 70% nd 70%
Spec 1 6% nd 7%
Cutoff 2 0.000136 nd 0.000136
Sens 2 90% nd 90%
Spec 2 0% nd 0%
Cutoff 3 0.000136 nd 0.000136
Sens 3 90% nd 90%
Spec 3 0% nd 0%
Cutoff 4 3.39 nd 3.32
Sens 4 20% nd 20%
Spec 4 70% nd 71%
Cutoff 5 4.35 nd 3.97
Sens 5 0% nd 10%
Spec 5 81% nd 80%
Cutoff 6 6.06 nd 5.44
Sens 6 0% nd 0%
Spec 6 91% nd 90%
OR Quart 2 0.50 nd 0.46
p Value 0.59 nd 0.55
95% CI of 0.040 nd 0.036
OR QuartZ 6.2 nd 5.8
OR Quart 3 1.1 nd 1.0
p Value 0.94 nd 1.0
95% CI of 0.13 nd 0.12
OR Quart3 8.9 nd 8.4
OR Quart 4 3.6 nd 3.9
p Value 0.17 nd 0.16
95% CI of 0.57 nd 0.59
OR Q1181rt4 23 nd 26
Proprotein convertase subtilisin/kexin type 9
U0 only
Cohort 2 Cohort 1 Cohort 2
nd 443000 261000
nd 481000 265000
nd 171000 159000
nd 6.7E—4
nd 182000 80700
nd 858000 596000
nd 41 10
nd 41 10
2012/066152
At ment
sCr or UO sCr only UO only
AUC 0.17 nd 0.17
SE 0.083 nd 0.084
p 5.3E—5 nd 7.2E—5
nCohort 1 47 nd 41
nCohort 2 10 nd 10
Cutoff 1 123000 nd 123000
Sens 1 70% nd 70%
Spec 1 0% nd 0%
Cutoff 2 102000 nd 102000
Sens 2 80% nd 80%
Spec 2 0% nd 0%
Cutoff 3 80700 nd 80700
Sens 3 90% nd 90%
Spec 3 0% nd 0%
Cutoff 4 538000 nd 580000
Sens 4 10% nd 10%
Spec 4 70% nd 71%
Cutoff 5 654000 nd 667000
Sens 5 0% nd 0%
Spec 5 81% nd 80%
Cutoff 6 699000 nd 699000
Sens 6 0% nd 0%
Spec 6 91% nd 90%
OR Quart 2 0 nd 0
p Value na nd na
95% CI of na nd na
OR Quart2 na nd na
OR Quart 3 2.3 nd 2.2
p Value 0.51 nd 0.55
95% CI of 0.19 nd 0.17
OR Quart3 29 nd 28
OR Quart 4 14 nd 17
p Value 0.023 nd 0.018
95% CI of 1.4 nd 1.6
OR Quart4 140 nd 170
While the invention has been described and exemplified in sufficient detail for
those skilled in this art to make and use it, various alternatives, modifications, and
improvements should be apparent without departing from the spirit and scope of the
invention. The examples provided herein are representative of preferred embodiments, are
exemplary, and are not intended as limitations on the scope of the invention.
Modifications therein and other uses will occur to those d in the art. These
modifications are encompassed within the spirit of the invention and are defined by the
scope of the claims.
It will be readily apparent to a person skilled in the art that varying
substitutions and modifications may be made to the invention disclosed herein without
departing from the scope and spirit of the invention.
All patents and publications ned in the specification are tive of
the levels of those of ordinary skill in the art to which the ion pertains. All patents
and publications are herein incorporated by reference to the same extent as if each
individual publication was specifically and individually indicated to be incorporated by
reference.
The invention illustratively described herein suitably may be practiced in the
absence of any element or elements, limitation or limitations which is not specifically
disclosed herein. Thus, for example, in each instance herein any of the terms
“comprising”, sting essentially of” and “consisting of” may be replaced with either
of the other two terms. The terms and expressions which have been employed are used as
terms of description and not of limitation, and there is no intention that in the use of such
terms and expressions of excluding any equivalents of the es shown and described
or portions thereof, but it is recognized that s modifications are possible within the
scope of the invention claimed. Thus, it should be understood that although the present
invention has been specifically disclosed by preferred embodiments and optional features,
modification and ion of the concepts herein disclosed may be resorted to by those
skilled in the art, and that such modifications and variations are considered to be within
the scope of this invention as defined by the appended claims.
Other embodiments are set forth within the following claims.
Claims (119)
1. A method for evaluating renal status in a subject, sing: performing one or more assays configured to detect Growth/differentiation factor 15 in a body fluid sample obtained from the subject to provide an assay ; correlating the assay result(s) to the renal status of the subject, wherein said ation step comprises correlating the assay (s) to one or more of diagnosis, risk stratification, prognosis, classifying and monitoring of the renal status of the subject.
2. A method according to claim 1, wherein said correlation step ses correlating the assay result(s) to prognosis of the renal status of the subject.
3. A method according to claim 1, wherein said correlating step comprises assigning a likelihood of one or more future changes in renal status to the subject based on the assay result(s).
4. A method according to claim 3, wherein said one or more future changes in renal status comprise one or more of a future injury to renal function, future reduced renal function, future improvement in renal on, and future acute renal failure (ARF).
5. A method according to one of claims 1-4, wherein said assay results further comprise at least 2, 3, 4, or 5 of: a measured concentration of Stanniocalcin-1, a measured concentration of Antithrombin-III, a measured concentration of Toll-like or 2, a measured concentration of Triiodothyronine (T3), a measured concentration of Thyroxine (T4), a measured concentration of Extracellular matrix protein 1, a measured concentration of Coagulation factor XIII A chain, a measured concentration of Coagulation factor XIII B chain, a measured concentration of Interleukin-17F, a ed concentration of Interleukin-22, a ed concentration of Vitronectin, a measured concentration of Progesterone, Estradiol, and a measured concentration of Proprotein convertase subtilisin/kexin type 9.
6. A method according to one of claims 1-5, wherein a plurality of assay s are combined using a function that converts the plurality of assay results into a single ite result.
7. A method according to claim 3, wherein said one or more future changes in renal status comprise a clinical outcome related to a renal injury suffered by the subject.
8. A method according to claim 3, wherein the likelihood of one or more future changes in renal status is that an event of interest is more or less likely to occur within 30 days of the time at which the body fluid sample was obtained from the subject.
9. A method according to claim 8, wherein the likelihood of one or more future changes in renal status is that an event of interest is more or less likely to occur within a period selected from the group consisting of 21 days, 14 days, 7 days, 5 days, 96 hours, 72 hours, 48 hours, 36 hours, 24 hours, and 12 hours.
10. A method according to one of claims 1-5, wherein the subject is selected for tion of renal status based on the pre-existence in the t of one or more known risk factors for prerenal, intrinsic renal, or postrenal ARF.
11. A method according to one of claims 1-5, n the subject is ed for evaluation of renal status based on an existing diagnosis of one or more of congestive heart failure, preeclampsia, eclampsia, diabetes mellitus, hypertension, coronary artery disease, proteinuria, renal insufficiency, glomerular filtration below the normal range, cirrhosis, serum creatinine above the normal range, sepsis, injury to renal function, d renal function, or ARF, or based on undergoing or having undergone major vascular surgery, coronary artery bypass, or other cardiac surgery, or based on re to NSAIDs, cyclosporines, tacrolimus, aminoglycosides, foscarnet, ethylene glycol, hemoglobin, myoglobin, ifosfamide, heavy metals, methotrexate, radiopaque contrast agents, or streptozotocin.
12. A method according to one of claims 1-5, wherein said correlating step comprises assessing r or not renal on is improving or worsening in a subject who has suffered from an injury to renal function, reduced renal function, or ARF based on the assay result(s).
13. A method according to one of claims 1-5, wherein said method is a method of ing a risk of the future occurrence or nonoccurrence of an injury to renal function in said subject.
14. A method according to one of claims 1-5, wherein said method is a method of assigning a risk of the future occurrence or nonoccurrence of d renal function in said subject.
15. A method according to one of claims 1-5, wherein said method is a method of assigning a risk of the future occurrence or nonoccurrence of a need for dialysis in said subject.
16. A method according to one of claims 1-5, wherein said method is a method of ing a risk of the future occurrence or nonoccurrence of acute renal failure in said subject.
17. A method according to one of claims 1-5, wherein said method is a method of assigning a risk of the future occurrence or nonoccurrence of a need for renal ement therapy in said subject.
18. A method according to one of claims 1-5, wherein said method is a method of assigning a risk of the future occurrence or nonoccurrence of a need for renal transplantation in said t.
19. A method according to one of claims 1-5, wherein said one or more future changes in renal status comprise one or more of a future injury to renal function, future reduced renal function, future improvement in renal function, and future acute renal failure (ARF) within 72 hours of the time at which the body fluid sample was ed.
20. A method according to one of claims 1-5, wherein said one or more future changes in renal status comprise one or more of a future injury to renal function, future reduced renal function, future improvement in renal on, and future acute renal failure (ARF) within 48 hours of the time at which the body fluid sample was obtained.
21. A method ing to one of claims 1-5, wherein said one or more future changes in renal status comprise one or more of a future injury to renal function, future reduced renal function, future improvement in renal function, and future acute renal failure (ARF) within 24 hours of the time at which the body fluid sample was obtained.
22. A method according to one of claims 1-5, wherein the subject is in RIFLE stage 0 or R.
23. A method according to claim 22, wherein the subject is in RIFLE stage 0, and said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage R, I or F within 72 hours.
24. A method according to claim 23, wherein the subject is in RIFLE stage 0, and said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage I or F within 72 hours.
25. A method according to claim 23, wherein the subject is in RIFLE stage 0, and said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 72 hours.
26. A method according to claim 22, wherein the t is in RIFLE stage 0 or R, and said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage I or F within 72 hours.
27. A method ing to claim 26, n the subject is in RIFLE stage 0 or R, and said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 72 hours.
28. A method according to claim 22, wherein the subject is in RIFLE stage R, and said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage I or F within 72 hours.
29. A method according to claim 28, wherein the subject is in RIFLE stage R, and said correlating step comprises assigning a hood that the subject will reach RIFLE stage F within 72 hours.
30. A method according to one of claims 1-5, wherein the subject is in RIFLE stage 0, R, or I, and said correlating step comprises ing a likelihood that the subject will reach RIFLE stage F within 72 hours.
31. A method according to claim 30, wherein the subject is in RIFLE stage I, and said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 72 hours.
32. A method according to claim 23, wherein said ating step comprises assigning a likelihood that the subject will reach RIFLE stage R, I or F within 48 hours.
33. A method according to claim 24, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage I or F within 48 hours.
34. A method ing to claim 25, n said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 48 hours.
35. A method according to claim 26, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage I or F within 48 hours.
36. A method according to claim 27, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 48 hours.
37. A method according to claim 28, n said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage I or F within 48 hours.
38. A method according to claim 29, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 48 hours.
39. A method according to claim 30, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 48 hours.
40. A method according to claim 31, wherein said correlating step comprises assigning a likelihood that the t will reach RIFLE stage F within 48 hours.
41. A method according to claim 23, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage R, I or F within 24 hours.
42. A method according to claim 24, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage I or F within 24 hours.
43. A method according to claim 25, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 24 hours.
44. A method according to claim 26, wherein said ating step comprises ing a likelihood that the t will reach RIFLE stage I or F within 24 hours.
45. A method according to claim 27, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 24 hours.
46. A method according to claim 28, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage I or F within 24 hours.
47. A method according to claim 29, wherein said ating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 24 hours.
48. A method according to claim 30, wherein said ating step comprises ing a likelihood that the subject will reach RIFLE stage F within 24 hours.
49. A method according to claim 31, wherein said correlating step comprises assigning a likelihood that the subject will reach RIFLE stage F within 24 hours.
50. A method according to one of claims 1-5, wherein the subject is not in acute renal failure.
51. A method according to one of claims 1-5, n the subject has not experienced a ld or greater increase in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained.
52. A method according to one of claims 1-5, wherein the subject has a urine output of at least 0.5 ml/kg/hr over the 6 hours ing the time at which the body fluid sample was obtained.
53. A method according to one of claims 1-5, wherein the subject has not enced an se of 0.3 mg/dL or greater in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained.
54. A method ing to one of claims 1-5, wherein the subject (i) has not experienced a 1.5-fold or greater increase in serum nine over a ne value determined prior to the time at which the body fluid sample was obtained, (ii) has a urine output of at least 0.5 ml/kg/hr over the 6 hours preceding the time at which the body fluid sample was obtained, and (iii) has not experienced an increase of 0.3 mg/dL or greater in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained.
55. A method according to one of claims 1-5, wherein the subject has not experienced a 1.5-fold or greater increase in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained.
56. A method according to one of claims 1-5, wherein the subject has a urine output of at least 0.5 ml/kg/hr over the 6 hours preceding the time at which the body fluid sample was obtained.
57. A method according to one of claims 1-5, wherein the subject (i) has not experienced a 1.5-fold or greater increase in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained, (ii) has a urine output of at least 0.5 ml/kg/hr over the 12 hours ing the time at which the body fluid sample was obtained, and (iii) has not experienced an increase of 0.3 mg/dL or greater in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained.
58. A method according to one of claims 1-5, wherein said correlating step comprises assigning one or more of: a likelihood that within 72 hours the subject will (i) experience a 1.5-fold or greater increase in serum creatinine (ii) have a urine output of less than 0.5 hr over a 6 hour period, or (iii) experience an increase of 0.3 mg/dL or r in serum creatinine.
59. A method according to claim 58, wherein said correlating step comprises ing one or more of: a likelihood that within 48 hours the subject will (i) experience a 1.5-fold or greater increase in serum creatinine (ii) have a urine output of less than 0.5 ml/kg/hr over a 6 hour period, or (iii) experience an increase of 0.3 mg/dL or greater in serum creatinine.
60. A method according to claim 58, wherein said correlating step comprises assigning one or more of: a hood that within 24 hours the t will (i) experience a 1.5-fold or greater se in serum creatinine (ii) have a urine output of less than 0.5 ml/kg/hr over a 6 hour period, or (iii) experience an increase of 0.3 mg/dL or greater in serum creatinine.
61. A method according to claim 58, wherein said correlating step comprises ing a likelihood that within 72 hours the t will experience a 1.5-fold or greater increase in serum creatinine.
62. A method according to claim 58, wherein said ating step comprises assigning a likelihood that within 72 hours the subject will have a urine output of less than 0.5 ml/kg/hr over a 6 hour period.
63. A method according to claim 58, wherein said correlating step comprises assigning a hood that within 72 hours the subject will experience an increase of 0.3 mg/dL or greater in serum creatinine.
64. A method according to claim 58, wherein said correlating step comprises assigning a likelihood that within 48 hours the subject will experience a 1.5-fold or greater increase in serum creatinine.
65. A method according to claim 58, wherein said correlating step comprises assigning a likelihood that within 48 hours the subject will have a urine output of less than 0.5 ml/kg/hr over a 6 hour period.
66. A method according to claim 58, wherein said correlating step comprises assigning a likelihood that within 48 hours the subject will experience an increase of 0.3 mg/dL or greater in serum creatinine.
67. A method according to claim 58, wherein said correlating step comprises assigning a likelihood that within 24 hours the subject will experience a 1.5-fold or greater increase in serum creatinine.
68. A method according to claim 58, wherein said correlating step comprises assigning a hood that within 24 hours the subject will have a urine output of less than 0.5 ml/kg/hr over a 6 hour period.
69. A method according to claim 58, wherein said correlating step comprises assigning a likelihood that within 24 hours the subject will experience an increase of 0.3 mg/dL or r in serum creatinine.
70. A method according to one of claims 1-5, wherein the subject has not experienced a 2-fold or r increase in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained.
71. A method according to one of claims 1-5, wherein the subject has a urine output of at least 0.5 ml/kg/hr over the 12 hours preceding the time at which the body fluid sample was ed.
72. A method according to one of claims 1-5, wherein the subject (i) has not experienced a 2-fold or greater increase in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained, (ii) has a urine output of at least 0.5 hr over the 2 hours preceding the time at which the body fluid sample was obtained, and (iii) has not experienced an increase of 0.3 mg/dL or r in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained.
73. A method according to one of claims 1-5, wherein the subject has not enced a 3-fold or greater increase in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained.
74. A method according to one of claims 1-5, wherein the subject has a urine output of at least 0.3 ml/kg/hr over the 24 hours ing the time at which the body fluid sample was obtained, or anuria over the 12 hours ing the time at which the body fluid sample was obtained.
75. A method according to one of claims 1-5, wherein the subject (i) has not experienced a 3-fold or greater increase in serum creatinine over a ne value determined prior to the time at which the body fluid sample was obtained, (ii) has a urine output of at least 0.3 ml/kg/hr over the 24 hours ing the time at which the body fluid sample was obtained, or anuria over the 12 hours preceding the time at which the body fluid sample was obtained, and (iii) has not experienced an se of 0.3 mg/dL or greater in serum creatinine over a baseline value determined prior to the time at which the body fluid sample was obtained.
76. A method according to one of claims 1-5, wherein said correlating step comprises assigning one or more of: a likelihood that within 72 hours the subject will (i) experience a 2-fold or r increase in serum creatinine (ii) have a urine output of less than 0.5 ml/kg/hr over a 12 hour period, or (iii) experience an increase of 0.3 mg/dL or greater in serum creatinine.
77. A method according to claim 76, wherein said correlating step comprises assigning one or more of: a likelihood that within 48 hours the subject will (i) experience a 2-fold or greater increase in serum creatinine (ii) have a urine output of less than 0.5 ml/kg/hr over a 6 hour period, or (iii) experience an increase of 0.3 mg/dL or greater in serum creatinine.
78. A method according to claim 76, wherein said correlating step comprises assigning one or more of: a likelihood that within 24 hours the subject will (i) experience a 2-fold or greater increase in serum creatinine, or (ii) have a urine output of less than 0.5 ml/kg/hr over a 6 hour period.
79. A method according to claim 76, n said correlating step comprises assigning a likelihood that within 72 hours the subject will experience a 2-fold or greater increase in serum creatinine.
80. A method according to claim 76, wherein said ating step comprises assigning a likelihood that within 72 hours the subject will have a urine output of less than 0.5 ml/kg/hr over a 6 hour period.
81. A method according to claim 76, wherein said correlating step comprises assigning a likelihood that within 48 hours the subject will experience a 2-fold or greater increase in serum creatinine.
82. A method according to claim 76, wherein said correlating step comprises assigning a likelihood that within 48 hours the t will have a urine output of less than 0.5 ml/kg/hr over a 6 hour period.
83. A method according to claim 76, wherein said correlating step comprises assigning a likelihood that within 24 hours the subject will experience a 2-fold or greater increase in serum creatinine.
84. A method according to claim 76, n said ating step comprises assigning a hood that within 24 hours the subject will have a urine output of less than 0.5 ml/kg/hr over a 6 hour period.
85. A method according to one of claims 1-5, n said correlating step comprises assigning one or more of: a likelihood that within 72 hours the t will (i) experience a 3-fold or greater increase in serum creatinine, or (ii) have a urine output of less than 0.3 ml/kg/hr over a 24 hour period or anuria over a 12 hour period.
86. A method according to claim 85, wherein said correlating step comprises assigning one or more of: a likelihood that within 48 hours the subject will (i) experience a 3-fold or greater increase in serum creatinine, or (ii) have a urine output of less than 0.3 hr over a 24 hour period or anuria over a 12 hour period.
87. A method according to claim 85, wherein said ating step comprises ing one or more of: a likelihood that within 24 hours the subject will (i) experience a 3-fold or greater increase in serum creatinine, or (ii) have a urine output of less than 0.3 ml/kg/hr over a 24 hour period or anuria over a 12 hour period.
88. A method according to claim 85, wherein said correlating step comprises assigning a likelihood that within 72 hours the subject will experience a 3-fold or greater increase in serum creatinine.
89. A method according to claim 85, wherein said correlating step comprises assigning a likelihood that within 72 hours the subject will have a urine output of less than 0.3 ml/kg/hr over a 24 hour period or anuria over a 12 hour period.
90. A method according to claim 85, wherein said correlating step ses assigning a likelihood that within 48 hours the subject will experience a 3-fold or greater se in serum creatinine.
91. A method according to claim 85, wherein said correlating step comprises assigning a likelihood that within 48 hours the subject will have a urine output of less than 0.3 ml/kg/hr over a 24 hour period or anuria over a 12 hour period.
92. A method according to claim 85, wherein said correlating step comprises assigning a likelihood that within 24 hours the subject will experience a 3-fold or greater increase in serum creatinine.
93. A method according to claim 85, wherein said ating step comprises assigning a likelihood that within 24 hours the subject will have a urine output of less than 0.3 ml/kg/hr over a 24 hour period or anuria over a 12 hour .
94. A method according to one of claims 1-93, wherein the body fluid sample is a urine .
95. A method according to one of claims 1-94, wherein said method further comprises performing assays that detect one, two or three, or more of Stanniocalcin-1, Antithrombin-III, Toll-like or 2, Triiodothyronine (T3), Thyroxine (T4), Extracellular matrix protein 1, Coagulation factor XIII A chain, Coagulation factor XIII B chain, Interleukin-17F, Interleukin-22, Vitronectin, Progesterone, Estradiol, and Proprotein convertase subtilisin/kexin type 9.
96. A kit, comprising: reagents for performing one or more assays configured to detect one or more kidney injury markers comprising at least Growth/differentiation factor 15 when used ing to the method of any one of claims 1 to 95.
97. A kit according to claim 96, wherein said reagents comprise one or more binding reagents, each of which specifically binds one of said kidney injury markers.
98. A kit according to claim 97, wherein a plurality of binding reagents are contained in a single assay device.
99. A kit according to claim 97, wherein at least one of said assays is configured as a sandwich binding assay.
100. A kit according to claim 97, wherein at least one of said assays is configured as a competitive binding assay.
101. A kit according to any one of claims 96-100, wherein said one or more assays further comprise assays that detect one, two or three, or more of ocalcin-1, Antithrombin-III, Toll-like receptor 2, Triiodothyronine (T3), Thyroxine (T4), Extracellular matrix protein 1, Coagulation factor XIII A chain, Coagulation factor XIII B chain, Interleukin-17F, eukin-22, Vitronectin, Progesterone, Estradiol, and Proprotein convertase subtilisin/kexin type 9.
102. A method for evaluating biomarker levels in a body fluid sample, comprising: obtaining a urine sample from a subject selected for evaluation based on a determination that the subject is at risk of a future or t acute renal injury; and performing a plurality of analyte binding assays configured to detect a plurality of kers comprising Growth/differentiation factor 15 by introducing the urine sample obtained from the subject into an assay ment which (i) contacts a plurality of reagents which specifically bind for detection the plurality of biomarkers with the urine sample, and (ii) generates one or more assay results indicative of binding of each biomarker which is assayed to a respective specific binding t in the plurality of reagents, wherein the subject is selected for evaluation based on a determination that the subject is in need of diagnosis, risk stratification, staging, prognosis, classifying or monitoring of the renal status of the subject.
103. A method ing to claim 102, wherein the subject is selected for evaluation based on a determination that the t is at risk of a future acute renal injury.
104. A method according to claim 103, wherein the subject is selected for evaluation based on a determination that the subject is at risk of a future injury to renal function, future reduced renal function, future improvement in renal function, and future acute renal failure (ARF).
105. A method according to claim 103, n the subject is ed for evaluation based on a ination that the subject is at risk of a future acute renal injury within 30 days of the time at which the urine sample was obtained from the t.
106. A method according to claim 102, wherein the subject is selected for evaluation based on a determination that the subject is at risk of a future acute renal injury within a period selected from the group consisting of 21 days, 14 days, 7 days, 5 days, 96 hours, 72 hours, 48 hours, 36 hours, 24 hours, and 12 hours.
107. A method according to claim 102, wherein the subject is selected for based on the pre-existence in the subject of one or more known risk factors for prerenal, intrinsic renal, or postrenal ARF.
108. A method according to claim 102, wherein the subject is selected for evaluation based on an existing diagnosis of one or more of congestive heart failure, preeclampsia, eclampsia, es mellitus, hypertension, coronary artery disease, proteinuria, renal insufficiency, glomerular tion below the normal range, cirrhosis, serum creatinine above the normal range, sepsis, injury to renal function, reduced renal function, or ARF, or based on undergoing or having undergone major vascular surgery, coronary artery bypass, or other cardiac surgery, or based on exposure to NSAIDs, cyclosporines, tacrolimus, aminoglycosides, foscarnet, ethylene glycol, hemoglobin, myoglobin, ifosfamide, heavy metals, methotrexate, radiopaque st agents, or streptozotocin.
109. A method according to claim 102, wherein the plurality of assays are immunoassays performed by (i) introducing the urine sample into an assay device comprising a plurality of antibodies, at least one of which binds to each biomarker which is assayed, and (ii) generating an assay result indicative of binding of each biomarker to its respective dy.
110. A method according to claim 102, wherein the subject is selected for tion based on a determination that the subject is at risk of one or more future changes in renal status ed from the group consisting of a future injury to renal function, future reduced renal function, future improvement in renal on, and future acute renal failure (ARF) within 72 hours of the time at which the urine sample was obtained.
111. A method according to claim 102, wherein the subject is selected for evaluation based on a determination that the subject is at risk of one or more future changes in renal status selected from the group consisting of a future injury to renal function, future reduced renal function, future improvement in renal function, and future acute renal failure (ARF) within 48 hours of the time at which the urine sample was obtained.
112. A method according to claim 102, wherein the subject is selected for evaluation based on a determination that the subject is at risk of one or more future s in renal status selected from the group consisting of a future injury to renal on, future reduced renal function, future ement in renal function, and future acute renal e (ARF) within 24 hours of the time at which the urine sample was obtained.
113. A method according to claim 102, n the subject is in RIFLE stage 0 or R.
114. A method according to claim 102, wherein the subject is in RIFLE stage 0, R, or I.
115. A method according to any one of claims 102 to 114, wherein the at least one assay result further comprises a measured biomarker concentration selected from the group consisting of a measured tration of Stanniocalcin-1, a measured concentration of rombin-III, a measured concentration of Toll-like receptor 2, a measured concentration of Triiodothyronine (T3), a measured concentration of Thyroxine (T4), a measured concentration of Extracellular matrix protein 1, a measured concentration of Coagulation factor XIII A chain, a measured concentration of Coagulation factor XIII B chain, a measured concentration of Interleukin-17F, a measured tration of Interleukin-22, a ed tration of Vitronectin, a measured concentration of Progesterone, Estradiol, and a measured concentration of Proprotein convertase subtilisin/kexin type 9.
116. A system for ting biomarker levels, comprising: a plurality of reagents which specifically bind for detection a plurality of biomarkers comprising Growth/differentiation factor 15; and an assay instrument configured to receive a urine sample and contact the plurality of reagents with the urine sample and to generate one or more assay results indicative of binding of each biomarker which is assayed to a respective specific binding reagent in the plurality of reagents when used according to the method of any one of claims 1 to 95 or 102 to 115.
117. A system according to claim 116, wherein the reagents se a plurality of antibodies, at least one of which binds to each of the kers which are assayed.
118. A system ing to claim 117, n assay instrument comprises an assay device and an assay device , wherein the plurality of antibodies are immobilized at a plurality of predetermined locations within the assay device, wherein the assay device is configured to receive the urine sample such that the urine sample contacts the plurality of predetermined locations, and wherein the assay device reader interrogates the plurality of ermined locations to generate the assay results.
119. A system according to any one of claims 116 to 118, wherein the plurality of biomarkers further comprises one or more biomarkers selected from the group consisting of Stanniocalcin-1, Antithrombin-III, Toll-like receptor 2, Triiodothyronine (T3), Thyroxine (T4), Extracellular matrix protein 1, Coagulation factor XIII A chain, Coagulation factor XIII B chain, Interleukin-17F, Interleukin-22, ectin, Progesterone, Estradiol, and Proprotein convertase subtilisin/kexin type 9. ast8129pct.txt
Applications Claiming Priority (25)
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US201161562885P | 2011-11-22 | 2011-11-22 | |
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US201161562829P | 2011-11-22 | 2011-11-22 | |
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PCT/US2012/066152 WO2013078253A1 (en) | 2011-11-22 | 2012-11-20 | Methods and compositions for diagnosis and prognosis of renal injury and renal failure |
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