NZ622220B2 - Inhibitors of nedd8-activating enzyme - Google Patents

Inhibitors of nedd8-activating enzyme Download PDF

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NZ622220B2
NZ622220B2 NZ622220A NZ62222012A NZ622220B2 NZ 622220 B2 NZ622220 B2 NZ 622220B2 NZ 622220 A NZ622220 A NZ 622220A NZ 62222012 A NZ62222012 A NZ 62222012A NZ 622220 B2 NZ622220 B2 NZ 622220B2
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amino
oxy
dihydro
methyl
methyl sulfamate
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NZ622220A
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NZ622220A (en
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Ashley Sue Mccarron
Todd B Sells
Matthew Stirling
Stephen G Stroud
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Millennium Pharmaceuticals Inc
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Priority claimed from PCT/US2012/052007 external-priority patent/WO2013028832A2/en
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Publication of NZ622220B2 publication Critical patent/NZ622220B2/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D239/00Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings
    • C07D239/02Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings
    • C07D239/24Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members
    • C07D239/28Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to ring carbon atoms
    • C07D239/46Two or more oxygen, sulphur or nitrogen atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D239/00Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings
    • C07D239/02Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings
    • C07D239/24Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members
    • C07D239/28Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to ring carbon atoms
    • C07D239/46Two or more oxygen, sulphur or nitrogen atoms
    • C07D239/47One nitrogen atom and one oxygen or sulfur atom, e.g. cytosine
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D473/00Heterocyclic compounds containing purine ring systems
    • C07D473/02Heterocyclic compounds containing purine ring systems with oxygen, sulphur, or nitrogen atoms directly attached in positions 2 and 6
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D473/00Heterocyclic compounds containing purine ring systems
    • C07D473/26Heterocyclic compounds containing purine ring systems with an oxygen, sulphur, or nitrogen atom directly attached in position 2 or 6, but not in both
    • C07D473/32Nitrogen atom
    • C07D473/34Nitrogen atom attached in position 6, e.g. adenine

Abstract

Disclosed is the NEED8-activating enzyme (NAE) inhibitor compound {(1S,2S,4R)-4-[(6-{[(1R,2S)-5-chloro-2-methoxy-2,3-dihydro-1H-inden-1-yl]amino}pyrimidin-4-yl)oxy]-2-hydroxycyciopentyl}methyl sulfamate and pharmaceutically acceptable salts thereof. Also disclosed are polymorphs of said NAE inhibitor compound and the use of the compound for treating cancer. r compound and the use of the compound for treating cancer.

Description

INHIBITORS OF NEDDS-ACTIVATING ENZYME FIELD This invention relates to compounds, compositions and methods for the treatment of various disorders, particularly disorders of cell proliferation, including cancers, and inflammatory disorders. in particular, the invention provides nds which inhibit the activity of NEDD8— activating enzyme.
BACKGROUND The post-translational modification of proteins by ubiquitin-like molecules (ubls) is an important regulatory process within cells, playing key roles in controlling many biological ses including cell division, cell signaling and the immune response. Ubls are small proteins that are covalently attached to a lysine on a target protein via an isopeptide linkage with a C-terminal glycine of the ubl. The ubiquitin-like molecule alters the molecular surface of the target protein and can affect such properties as protein-protein interactions, enzymatic ty, stability and cellular localization of the target.
Ubiquitin and other ubls are activated by a specific E1 enzyme which catalyzes the formation of an acyl—adenylate intermediate with the C-tenninal e of the ubl. The activated ubl moleCule is then transferred to the catalytic cysteine e within the E1 enzyme through formation of a thioester bond intermediate. The E1—ubl intermediate and an E2 ate, resulting in a thioester exchange wherein the ubl is transferred to the active site cysteine of the E2. The ubl is then conjugated to the target protein, either directly or in conjunction with an E3 ligase, through isopeptide bond formation with the amino group of a lysine side chain in the target protein.
The biological consequence of ubl cation depends on the target in question.
Ubiquitin is the best characterized of the ubls and a consequence of modification by ubiquitination is the ation of poly-ubiquitinated proteins by the 268 some. Ubiquitin is conjugated to its target proteins through an enzymatic cascade involving its ic E1 ting , Uba1 (ubiquitin activating enzyme, UAE), a conjugating enzyme from the family of E25, and a tin ligase from either the RING or HECT classes of E3s. See, Huang et at, Oncogene, 23:1958-71 (2004). Target specificity is controlled by the particular combination of E2_and E3 protein, with >40 E25 and >100 E35 being known at present. In on to ubiquitin, there are at least 10 ubiquitin-like proteins, each believed to be activated by a specific E1 activating enzyme and processed through similar but distinct downstream conjugation pathways. Other ubls for which E1 activating enzymes have been fied e Nedd8 (APPBP1-Uba3), ISG15 (UBE1 L) and the SUMO family (Aos1-Uba2). ' [005] The ubl Nedd8 is activated by the dimer Nedd8-activating enzyme (APPBP1-Uba3) (NAE) and is erred to a single E2 (ch12), ultimately resulting in on to cullin proteins. The function of neddylation is the activation of cullin-based ubiquitin ligases involved in the tination and hence turnover of many cell cycle and cell signaling proteins, including p27 and I-KB. See Pan et ai., ne. 23:1985-97 . The ubl SUMO is activated by the heterodimer sumo activating enzyme (Aos1-Uba2) (SAE) and is transferred to a single E2 (ch9), followed by coordination with multiple E3 ligases, ultimately resulting in ation of target ns. Sumo modification can affect the cellular localization of target proteins and proteins modified by SUMO family members are involved in nuclear transport, signal transduction and the stress response. See Seeler and Dejean, Nat Rev Moi Cell Biol. 4:690-9, (2003). The function of sumoylation includes tion of calf signaling ys (e.g., cytokine, WNT, growth factor, and steroid hormone signaling) involved in transcription regulation; as well as pathways involved in control of genomic integrity (e.g., DNA replication, response to DNA , recombination and repair). See Muller et ai, Oncogene. 23:1998—2006, (2004). There are other ubls (e.g., ISG15, FAT10, Apg12p) for which the biological functions are still under investigation.
A particular pathway of ance which is regulated via E1 activating enzyme activities is the ubiquitin-proteasome pathway (UPP). As discussed above, the enzymes UAE and NAE te the UPP at two different steps in the ubiquitination cascade. UAE activates ubiquitin in the first step of the cascade, while NAE, via activation of Nedd8, is responsible for the activation of the cullin based ligases, which in turn are required for the final transfer of ubiquitin to certain target proteins A functional UPP pathway is required for normal cell maintenance. The UPP plays a central role in the turnover of many key regulatory ns involved in transcription, cell cycle progression and apoptosis, all of which are important in disease states, including tumor cells. See, e.g., King etai., Science 274: 1652-1659 (1996); Vorhees et at, Clin. Cancer Res, 9: 6316-6325 (2003); and Adams ef al., Nat. Rev. Cancer, 4: 349-360 (2004). Proliferating cells are particularly sensitive to inhibition of the UPP. See, Drexler, Proc. Natl. Acad. Sci., USA 94: 855—860 (1977). The role of the UPP pathway in oncogenesis has led to the investigation of proteasome inhibition as a potential anticancer therapy. For example, modulation of the UPP y by inhibition of the 268 proteasome by VELCADE® (bortezomib) has proven to be an ive treatment in certain s and is approved for the treatment of multiple myeloma and mantle cell lymphoma patients who have received at least one prior therapy. Examples of proteins whose levels are controlled by cullin-based ubiquitin ligases which are downstream of NAE and UAE activity include the CDK inhibitor p27Kip1 and the inhibitor of NFKB, IKB. See, Podust ef al., Proc. Natl. Acad. Sci, 97: 4579-4584 (2000), and Read et at, Mol. Cell Biol, 20: 2326-2333 (2000). Inhibition of the degradation of p27 is expected to block the progression of cells through the G1 and 3 phases of the cell cycle. Interfering with the degradation of IKB should prevent the nuclear localization of NF-KB, transcription of s dependent genes associated with the malignant phenotype, and resistance to standard cytotoxic therapies. onally, NF-KB plays a key role in the expression of a number of pro-inflammatory ors, implicating a role for such inhibitors in inflammatory diseases. Furthermore, inhibition of UPP has been implicated as a useful target for additional therapeutics, such as inflammatory disorders, including, 9.9., toid arthritis, asthma, multiple sclerosis, sis and reperfusion injury; egenerative ers, including e.g., Parkinson's disease, Alzheimer’s disease, triplet repeat disorders; neuropathic pain; ischemic disorders, e.g., stroke, infarction, kidney disorders; and cachexia. See, e.g., Elliott and Ross, Am. J. Clin. Pathol., 116:637-46 (2001); Elliott et at, J. Mol. Med, 81:235-45 ; Tarlac and Storey, J. Neurosci.
Res. 74: 406-416 ; Mori et at, ath. Appl. Neurobiol., 31: 53-61 (2005); Manning, Curr. Pain Headache Rep., 8: 192-8 (2004); Dawson and , Science, 302: 619—822 (2003); Kukan, J. Physiol. Phannacol., 55: 3-15 (2004); Wojcik and DiNapoli, Stroke, :1506—18 (2004); Lazarus et al., Am J Physiol., 27:E332—41 (1999).
Targeting E1 activating enzymes provides a unique opportunity to interfere with a variety of biochemical pathways important for maintaining the ity of cell division and cell signaling.
E1 activating enzymes function at the first step of ubl conjugation pathways; thus, inhibition of an E1 activating enzyme will specifically modulate the downstream biological consequences of the ubl modification. As such, inhibition of these ting enzymes, and the resultant inhibition of downstream effects of ubl-conjugation, represents a method of interfering with the integrity of cell division, cell signaling, and several aspects of cellular physiology which are important for disease mechanisms. Thus, E1 enzymes such as UAE, NAE, and SAE, as regulators of diverse cellular functions, are potentially important eutic targets for the identification of novel ches to treatment of diseases and ers.
United States Patent Appl. No. 11/346,469 (filed February 2, 2006, publication no.
US 200610189636) and International Patent Appl. No. PCT/USO6/04637 (filed February 2, 2006, publication no. W0 20061084281) (collectively, hley et al.") report various E1 enzyme inhibitors of the formula: R4 5 5' 4 R R R 9 m O:S“x R36 / R3a HZN Rab R3d ,wherein: Rk Rk / R1 ,(N / \N A's. R2 A-ii R?“ “1 “Y” R‘ N / N a/ ‘N / ——- 2/ EN ‘——N Rh R2 Rh A-iv A.“ , 01' These applications do not report the al entities that are the subject of this application.
United States Patent Appl. No. 111700.614 (filed January 31, 2007, publication no.
US 200710191293) and international Patent Appl. No. PCT1USO7102560 (filed January 31, 2007, publication no. W0 20071092213) (collectively, "Langston et al.") report various E1 enzyme tors of the formula: wherein: WO 28832 A is A—iv These applications do not report the chemical entities that are the subject of this application.
United States Patent Appl. No. 111890338 (filed August 6, 2007, publication no.
US 200810051404) and International Patent Appl. No. PCTIUSOYI17463 (filed August 6, 2007, publication no. ) (collectively, "Claiborne et al.") report various E1 enzyme inhibitors of the formula: Rf R9 W@ 9 Re O‘-'/S"X R0 HZN Rb Rd wherein: Ring A is a 6-membered nitrogen-containing heteroaryl ring, optionally fused to a 5- or 6- membered aryl, heteroaryl, cycloaliphatic or heterocyclic ring; and W is -CH2-, -CHF-, -CF2-, -CH(R*)-, -CF(R“)—, -NH-, -N(R")—, -O-, -S- or )-.
These applications do not report the chemical entities that are the subject of this application.
At this time, no tor of an E1 activating enzyme has been approved as a treatment by a government health authority. A need ues to exist for inhibitors of E1 activating enzymes such as NAE.
SUMMARY In one , the invention relates to the chemical entities which are the compound {(1 S,28,4R)—4—[(6-{[(1R,28)—5-chloro-2—methoxy—2,3-dihvdro-1H-indenyl]amino}pyrimidin-4— yl)oxy]—2—hydroxycyclopentyl}methyl sulfamate ) and pharmaceutically acceptable salts thereof, and prodrugs thereof.
In one aspect, the invention relates to compositions comprising the chemical entity which is the compound {(18,28,4R)—4-[(6-{[(1R,2S)chloromethoxy-2,3-dihydro—1H-inden yl]amino}pyrimidinyl)oxy]hydroxycyclopentyl}methyl sulfamate (l-216) or a pharmaceutically acceptable salt thereof, or a prodrug thereof, and one or more pharmaceutically able carriers. in one aspect. the invention relates to solid state forms of the compound {(18,28,4R)—4— [(6-{[(1R,2 hloromethoxy-2,3-dihydro-1 H-inden—1-yl]amino}pyrimidinyl)oxy]-2— hydroxycyclopentyl}methyl sulfamate (l-216) or a pharmaceutically acceptable salt thereof.
In one aspect. the invention relates to methods of treating cancer comprising administering to a patient in need of such treatment the chemical entity which is the nd {(1 S,28,4R)[(6-{[(1R,2S)chloro—2—methoxy-2,3-dihydro-1 H-indenyl]arnino}pyrimidin-4— yi)oxy]-2—hydroxycyclopentyl}methyl ate (l-216) or a pharmaceutically acceptable salt thereof, or a prodrug thereof.
BRIEF DESCRIPTION OF THE FIGURES Figure 1 shows the codynamic and pharmcokinetic parameters for {(1S,28,4R)— 2-hydroxy—4—[(6-{[(1 R,28)—2-methoxy—2,3-dihydro—1 H~inden~1-yl]amino}pyrimidin-4— yl)oxy]cyclopentyl}methyl sulfamate (H15) in female Ncr nude mice bearing HCT116 tumor xenografts ing a single subcutaneous administration at 30 mg/kg.
Figure 2 shows the pharmacodynamic and pharmcokinetic parameters for {(18,2S,4R)- 4—[(6-{[(1R,28)—5-chloro-2—methoxy—2,3—dihydro-1H-inden-‘l-yl]amino}pyrimidinyl)oxy] hydroxycyclopentyl}methyl sulfamate (l-216) in female Ncr nude mice bearing HCT116 tumor xenografts following a single subcutaneous administration at 10 mglkg.
Figure 3 shows the pharmacodynamic and pharmcokinetic parameters for {(18,28,4R)- 4—[(6-{[(1R,28)—5-chloro—2—methoxy—2,3-dihydro—1H-indeny|]amino}pyrimidin—4-yl)oxy] hydroxycyclopentyl}methyl ate (l-216) in female Ncr nude mice bearing HCT116 tumor xenografts ing a single subcutaneous administration at 30 mglkg.
Figure 4 shows an x—ray powder diffraction (XRPD) pattern for crystalline Forml {(1S,28,4R)[(6-{[(1R,28)-5—chloromethoxy-2,3-dihydro-1H-indenyl]amino}pyrimidin—4- yl)oxy]hydroxycyclopentyl}methyl sulfamate (l-216) hydrochloride.
Figure 5 shows a ential scanning calorimetry (DSC) thermogram for crystalline Form 1 - {(1 S,28,4R)—4—[(6-{[(1R,28)—5—chioromethoxy-2,3-dihydro—1H-indenyl]amino}- pyrimidin—4—yl)oxy]—2-hydroxycyclopentyl}methyl sulfamate ) hydrochloride.
Figure 6 shows a thermogravimetric analysis (TGA) thermogram for crystalline Form | {(1S,28,4R)—4-[(6-{[(1R,28)—5-chloromethoxy—2,3-dihydro-1 H—indenyl]amino}pyrimidin yl)oxy]—2—hydroxycyclopentyl}methyl sulfamate (l-216) hydrochloride.
Figure 7 shows an x-ray powder diffraction (XRPD) pattern for crystalline Forml {(1S,28,4R)—4—[(6-{[(1R,28)—5-chloromethoxy-2.3-dihydro—‘lH-indenyl]amino}pyrimidin yl)oxy]-2—hydroxycyclopentyl}methyl sulfamate (I-216) hydrochloride produced in Example 2, below.
Figure 8 shows a differential scanning calorimetry (DSC) thermogram for crystalline Form | {(1 S,2S,4R)[(6-{[(1R,28)chloromethoxy-2,3-dihydro-1H-inden-i-yl]amino}- pyrimidinyl)oxy]hydroxycyclopentyl}methyl sulfamate ) hydrochloride produced in Example 2, below.
Figure 9 shows a thermogravimetric analysis (TGA) thermogram for crystalline Form | {(1 S,28,4R)—4—[(6-{[(1R,28)chloro—2-methoxy—2,3-dihydro—1H-inden—1-yl]amino}pyrimidin-4— yl)oxy]hydroxycyclopentyl}methyl sulfamate (l-216) hloride ed in Example 2, below.
Figure 10 shows an x-ray powder diffraction (XRPD) pattern for crystalline Form ll {(1 S,28,4R)—4—[(6-{[(1R,28)chloromethoxy-Z,3-dihydro—1H-indeny|]amino}pyrimidin yl)oxy]-2—hydroxycyclopentyl}methyl sulfamate (l-216) hydrochloride ed in Example 9, below.
DESCRIPTION Provided are chemical entities that are ive as tors of NeddB-activating enzyme (NAE). The chemical entities are useful for inhibiting NAE ty in vitro and in vivo, and are useful for the treatment of disorders of cell proliferation, particularly cancers, and other disorders associated with NAE activity. The chemical entities are the compound {(1S,ZS,4R) [(6-{[(1R,2S)chloro—2—methoxy—2,3-dihydro-1 H-indenyi]amino}pyrimidinyl)oxy]—2— hydroxycyclopentyl}methyl sulfamate (herein referred to as "l-216"): ' A O N H2N~9 /““ ”8‘0 O c and non-covalently ated molecular entities. A chemical entity comprising the compound l-216 thus es, e.g., the free nd l-216, pharmaceutically acceptable salts of l-216, pharmaceutically acceptable solvates of l-216 and pharmaceutically acceptable solvates of pharmaceutically acceptable salts of 1-216. In some embodiments, the chemical entity is the free compound l-216 or a pharmaceutically acceptable salt thereof. In some embodiments, the chemical entity is a pharmaceutically able salt of l-216. In some ments, the chemical entity is the free compound l-216 or a ceutically acceptable solvate thereof. In some embodiments, the chemical entitly is a pharmaceutically acceptable solvate of a pharmaceutically acceptable salt of l-216.
Ciaiborne et al. report s inhibitors of E1 enzymes, including NAE. For example, Claiborne et al. report that the compounds in the following Table 1 exhibited |Cso values less than or equai to 500 nM in an NAE assay (Claiborne Example 137).
Table 1 {(1R,2R,38,4R)[(6—{[(1S)f|uoro—2,3—dihydro-1H—indenyl]amino}pyrimidin-4—y|)- amino]-2, 3-dihydroxycyclopentyl}methyl sulfamate; {(1R,2R,3S,4R)-2,3-dihydroxy[(6-{[(1R,28)-2—methoxy-2,3-dihydro-1H—indeny|]- amino}pyrimidin-4—yl)amino]cyclopentyl}methyl sulfamate; [(1R,2R,3S,4R)—2,3-dihydroxy(9H-purinylamino)cyclopentyl]methyl sulfamate; [(18,28,4R)—4-({6—[(1 S)—2,3-dihydro-1H—indenylamino]pyrimidin-4~yl}amino) hydroxycyclopentyl]methyl sulfamate; {(1R,2R,38,4R)[(6-{[(1S)-4,7-difluoro-2,3-dihydro-1H—inden—1-yl]amino}pyrimidin-4— no]—2,3-dihydroxycyclopentyl}methyl sulfamate; [(1R,2R,3S,4R)-4~({6-[(1R)-2,3-dihydro-1H-indeny|amino]pyrimidiny|}amino)-2,3- dihydroxycyclopentyl]methyl sulfamate; {(1R,2R,3S,4R)-2,3-dihydroxy—4—[(8-phenyI-9H-purinyi)amino]cyclopentyl}methyl suifamate; [(1 R,2R,3S,4R)—2,3-dihydroxy—4-({2-[(3-methyl-2,3-dihydro-1 H—indenyl)- amino]pyrimidinyl}amino)cyclopentyl]methyl sulfamate; [(1 S,2R,3S,4R)—4—({6—E(1S)-2,3-dihydro-1H-indenylamino]pyrimidin-4—yl}amino)-2,3- dihydroxycyclopentyllmethyl sulfamate; [(1R,2R,3S,4R)—2,3-dihydroxy—4—({6-[(1 ,3,4-tetrahydronaphthalen—1- ylamino]pyrimidiny|}amino)cyc|opentyl}methyl suifamate; [(1R,2R,3S,4R)—4—({6—[(cyclohexylmethyl)amino]pyrimidiny|}amino)-2,3- dihydroxycyclopentyl]methyl suifamate; {(1R,2R,38,4R)[(2—{[(1S)—3,3-d—imethyI-2,3-dihydro-1H—indeny|]amino}pyrimidin—4— yl)amino]—-2, 3-dihydroxycyclopentyl}methyl sulfamate; {(1R,2R,3S,4R)—4-[(6-{[(1 -difluoro-2,3-dihydro—1H—indenyi]amino}pyrimidin-4— no]—2,3-dihydroxycyciopentyl}methyl sulfamate; [(1R,2R,3S.4R)—4-({6-[(1 S)-2,3-dihydro-1H-indeny|amino]—2—methylpyrimidin—4-yi}- -2,3-dihydroxycyclopentyl]methyl sulfamate; {(1R,2R,38,4R)-4—[(6-{[(1 S)chloro-2,3-dihydro-1H-indeny|]amino}pyrimidiny|)- —2, 3-dihydroxycyciopentyl}methyl sulfamate; {(1R,2R,38,4R)[(6-{[(1 -dimethyI-2,3-dihydro-1H—indenyl]amino}pyrimidin yl)amino]—2,3-dihydroxycyclopentyl}methyl sulfamate; {(1R,2R,38,4R)—4-[(6—{[(1 S)chloro-2,3-dihydro-1H—indeny|]amino}pyrimidiny|)- amino]-2,3-dihydroxycyclopentyl}methyl sulfamate; [(1R,28,4R)-4—({6—[(1S)-2,3—dihydro-1H-indeny|amino]pyrimidinyl}amino)—2— hydroxycyciopentyl]methyl sulfamate; [(1R,2R,38,4R)—4—({4—[(1 S)-2,3-dihydro-1H—inden—1-ylamino]—1,3,5-triazinyi}amino)- 2,3-dihydroxycyciopentyflmethyl ate; ((1R,2R,3S,4R){[6-(benzy|amino)pyrimidiny|]amino}-2,3-dihydroxycyciopentyl)— methyl sulfamate; [(1R,2R,38,4R)({6-[(1 S)-2,3-dihydro-1H-indenylamino]pyrimidiny|}amino)-2,3- dihydroxycyclopentyi]methyl sulfamate; [(1 S,28,4R)—4-({6-[(1S)-2,3-dihydro-1H-inden-1—y|amino]—5-methyipyrimidinyl}oxy)—2— hydroxycyclopentyllmethyl sulfamate; ((1S,28,4R)—4—{[8-(2—chIorophenyl)-9H-purin-6—yl]amino}hydroxycyclopentyl)methyl sulfamate; ((1S,28,4R)-2—hydroxy—4—{[8-(2-phenoxyphenyl)—9H-purin yllamino}cyciopentyl)methyl sulfamate; {(1S,28,4R)hydroxy[(6-phenyI-YH-pyrrolo[2,3-d]pyrimidin yl)amino]cyciopentyl}methyi sulfamate; {(1S,28,4R)—4—[(8—dibenzo[b,d]furanyI-9H-purinyl)amino]—2— hydroxycyclopentyl}methyl ate; [(1S.25,4R)—2—hydroxy({6-[(1S)-1,2,3,4wtetrahydronaphthaleny|amino]pyrimidin yl}oxy)cyclopentyl]methyl sulfamate; ((1S.28,4R){[8-(2,3-dihydro-1 ,4-benzodioxinyl)-9H-purinyl]amino} hydroxycyclopentyl)methyl sulfamate; [(1 S,ZS,4R)—2-hydroxy({6-[(1-naphthy|methyl)amino]pyrimidin—4- yl}oxy)cyclopentyllmethyl sulfamate; {(1S,25,4R)hydroxy[(6-{[(1S,28)methyl-2,3—dihydro—1 n y|]amino}pyrimidin—4—yl)oxy]cyc|opentyl}methyl ate; [(1 R,2R,3S.4R)—4—({4—[(1S)-2,3-dihydro-1H-inden-‘I-y|amino]methyI-1 ,3,5-triazin y|}amino)—2,3-dihydroxycyclopentyl]methyl sulfamate; ((1S,28,4R)—2—hydroxy—4—{methyl[8—(1-naphthyI)-9H-purin yl]amino}cyclopentyl)methyl sulfamate; {(1S,28,4R)—2—hydroxy—4—[(6—{[(1R,28)—2—methoxy—2,3-dihydro-1Hminden yl]amino}pyrimidin~4—yl)amino]cyclopentyl}methyl sulfamate; ((1S,ZS,4R)hydroxy~4-{[8-(1-naphthyI)—9H-purin—6—yl]amino}cyclopentyl)methyl sulfamate; {(1 R,2R,3S,4R)-2,3-dihydroxy[(4-{[(1 R23)methoxy—2,3-dihydro—1 H-inden yl]amino}-1,3,5-triazinyl)amino]cyclopentyl}methyl sulfamate; ‘ ((1S,23,4R){[6-ch|oro—2—(1-naphthyl)-3H-imidazo[4,5-b]pyridinyl]amino}-2— hydroxycyclopentyl)methyl sulfamate; ((1S,ZS,4R)-4—{[8-(3-chIorophenyl)-9H-purin-6—yl]amino}-2—hydroxycyclopentyl)methyl sulfamate; ,4R)hydroxy({8-[2-(trifluoromethoxy)phenyl]—9H-purin—6— yl}amino)cyclopentyl]methyl sulfamate; {(18,28,4R)hydroxy—4-[(8-phenyl-9H-purinyl)oxy]cyc|opentyl}methyl sulfamate; [(1S,28.4R)—4—({8—[4—(dimethylamino)—1-naphthyl]-9H-purinyl}amino) hydroxycyclopentyl]methyl sulfamate; {(1S,28,4R)—4—[(6-{[(1S)-3,3-dimethyI-2,3-dihydro-1H-indeny|]amino}pyrimidin-4— yl)amino]—2—hydroxycyclopentyl}methyl sulfamate; ((1S,28,4R)—4-{[8-(2,3-dimethoxyphenyI)-9H-purinyl]amino} hydroxycyclopentyi)methyl sulfamate; [(18,28,4R)—4-({8-[2-(benzyloxy)phenyl]-9H-purinyl}amino)—2- hydroxycyclopentyflmethyl sulfamate; m{(1S,28,4R)hydroxy-4—[(8—phenyl-9H-purin—6—yl)amino]cyclopenty|}methyl ate; {(1S,ZS,4R)[(6-{[(1S)—3,3-dimethyl-2,3—dihydro-1H-indeny[]amino} fluoropyrimidin-4—yl)amino]—2—hydroxycyclopenty|}methyl sulfamate; 8,4R){[8-(7-ch|oroquinolin—4-yI)-7H.-purinn6-yl]oxy} hydroxycyclopentyl)methyl suifamate; ((1S,25,4R)—2—hydroxy—4—{[6—(1-naphthyl)—7H-pyrrolo[2.3-d]pyrimidin y!]amino}cyclopentyl)methyl sulfamate; N-({(1S,28,4R)hydroxy[(6-{[(1 R,28)methoxy—2,3-dihydro-1 H-inden yl]amino}pyrimidin-4—yl)oxy]cyclopentyl}methyi)sulfamide {(1S,ZS,4R)[(5-fluoro{[(1R,28)methoxy-2,3-dihydro-1 H-inden—1 - yl]amino}pyrimidin-4—yl)oxy]-2—hydroxycyclopentyl}methyl sulfamate; {(1S,25,4R)hydroxy[(8-quinolinyI-7H-purin-fi-yl)amino]cyclopentyl}methyl sulfamate; - ((1S,28,4R)—2—hydroxy-4—{[8—(1-naphthyl)—9H-purinyl]oxy}cyc|opentyl)methyl ate; {(1S,28.4R)-4—[(8-benzyl-9H-purinyl)amino]hydroxycyclopentyl}methyl sulfamate; {(1S,28.4R)hydroxy—4—[(2—phenyl[1 ,3]oxazolo[5,4-d]pyrimidin—T— yl)amino]cyc|opentyl}methyl suifamate; ((1S,23,4R)—4—{[8-(2,6—dimethoxypheny|)-9H-purinyl]amino} hydroxycyclopentyl)methyl sulfamate; ((1S,28,4R)hydroxy—4-{[8—(3-methoxyphenyl)—9H-purin yl]amino}cyciopentyl)methy| sulfamate; ((1S,28,4R){[8-(2,2-dimethyl-2,3-dihydrobenzofuranyl)-9H-purinyl]amino}—2- hydroxycyclopentyl)methyl sulfamate; [(1S,ZS,4R)hydroxy—4—({8—[(3-methy|phenyl)sulfonyl]-9H-purin—6- yl}oxy)cyclopentyl]methyl sulfamate; [(18,23,4R)({8—[4—(benzyloxy)phenyI]—7H-purinyl}amino) hydroxycyclopentyllmethyl sulfamate; [(1S.25,4R)({8-[4-(dimethylamino)naphthyI]-7H-purin-6—yl}oxy)—2— hydroxycyclopentyllmethyl sulfamate; 8,4R)[(8-biphenyIyI-9H-purinyl)amino]hydroxycyclopenty|}methyl sulfamate; R,3S,4R)—4—[{6—[(1S)—2,3-dihydro-1H-indenylamino]pyrimidin yl}(methyi)amino]—2,3-dihydroxycyclopentyl}methyl sulfamate; ID.4 ((18,28,4R)hydroxy—4-{[8-(2-methylphenyl)—9H-purin-6—yl]amino}cyclopentyl)methyl ate; ((1 S,4R)-2,3-dihydroxy{I6-(phenylethynyl)pyrimidin yIIamino}cyc£opentyl)methyl sulfamate; ((1S,ZS,4R)hydroxy{[2—(1-naphthyl)—3H-imidazo[4,5-b]pyridin yl]oxy}cyclopentyl)methyl sulfamate; ((1S,28,4R)—4-{[8-(4—chIorophenyI)-9H-purin—6—yl]amino}hydroxycyclopentyl)methyl sulfamate; {(1S28,4R)-2—hydroxy—4-[(8—isoquinolinyI-7H-purinyl)oxy]cyclopentyl}methyl sulfamate; {(1S,28,4R)hydroxy—4—[(6—{[(1R,23)methoxy-2,3-dihydro-1 H-inden—1 - yl]amino}pyrimidinyl)oxy]cyclopentyl}methyl sulfamate; 8,4R){[8—(2,3-dihydro—1-benzofuranyl)-7H-purinyl]amino}-2— hydroxycyclopentyl)methyl sulfamate; ((1R,2R,38,4R)-2,3-dihydroxy-4—{[6-(5,6,7,8—tetrahydronaphthalen ylamino)pyrimidiny|]amino}cyclopentyl)methyl sulfamate; ((1S.28,4R)—2—hydroxy—4—{[8—(1,2,3,4—tetrahydronaphthaleny|)-9H—purin yl]amino}cyclopentyl)methyl sulfamate; [(1S,28,4R)—2—hydroxy-4—({8-[2—(trif|uoromethyl)phenyl]—9H-purin-6— yl}amino)cyclopentyl]methyl sulfamate; {(1S,ZS,4R)[(6-{[(1S)-3,3-dimethyI-2,3-dihydro-1 H-indenyl]amino}pyrimidin-4— yl)oxy]hydroxycyclopentyl}methyl sulfamate; ,4R)hydroxy[(4-{[(1R,25)—2—methoxy—2,'3-clihydro-1 H-indenyl]amino}- 1,3,5-triazinyl)amino]cyclopentyl}methy| sulfamate; ((1S.28,4R)—2-hydroxy—4-{[8-(5,6,7,8-tetrahydronaphthalen-1—yl)—9H-purin-6— yllamino}cyclopentyl)methyl ate; {(1S,28,4R)—4—[(8—cyc[ohexyl-9H-purin-6—yl)amino]hydroxycyclopentyl}methyl sulfamate; ((1S,23,4R){[8—(1—benzyI-1 H-pyrazol-4—yl)—7H-purin—6—yl]oxy} hydroxycyclopentyl)methyl ate; {(1S,2S,4R)hydroxy[(9-methyEphenyI—QH-purinyl)amino]cyc|opentyl}methyl suifamate; {(1S,28,4R)[(8-tert—butyl-9H-purinyl)amino]hydroxycyclopentyl}methyl sulfamate; ((1S,ZS,4R)-2—hydroxy—4—{I8—(2-methoxyphenyl)-9H-purin y|]amino}cyclopentyl)methyl ate; {(1S,28,4R)[(4-{[(1S)-3,3-dimethyl-2,3-dihydro-1 H-indenyl]amino}-1,3,5-triazin-2— y|)amino]hydroxycyclopentyl}methyl sulfamate; [(1S,28,4R)hydroxy({8-[(3-methylphenyl)sulfanyI]-7H-purin-S— y|}oxy)cyclopentyl]methyl sulfamate; [(1 S,28,4R)—4-({8—[2—(dimethylamino)phenyl]-9H-purin-B-yl}amino)—2— hydroxycyclopentyllmethyl sulfamate; ((1S,23,4R)—2—hydroxy-4—{[8—(4—pyrrolidin—1~ylnaphthyI)-7H-purin yl]oxy}cyciopentyl)methyl sulfamate; ((1S,2$,4R)—2—hydroxy—4-{[8—(1H-indolyl)-7H—purin—6-yl]oxy}cyclopentyl)methyl sulfamate; {(1S,2$,4R)—2—hydroxy—4-[(6—{[(1 R,28)—2—methoxy—1 ~tetrahydronaphthalen yl]amino}pyrimidinyl)oxy]cyclopentyl}methyl sulfamate; {(1S,2$,4R)—2—hydroxy-4—[(6-{[(1 S,2R)—2—methoxy—1,2,3,4—tetrahydronaphthalen yl]amino}pyrimidinyl)oxy]cyclopentyl}methyl sulfamate; ((18,23,4R){4—[(1S)—2,3-dihydro-1H-indenylamino]—5,6—dihydro-7H-pyrrolo[2,3- d]pyrimidinyl}hydroxycyclopentyl)methyl ate; 8,4R)—4—[(4—{[(1R)-2.2-difluoro—2,3-dihydro-1H-inden-1—yl]amino}-1,3,5-triazin yl)amino]hydroxycyclopenty|}methyl sulfamate; {(1S,ZS,4R)-2—hydroxy—4—[(6—{[(1R,28)—2—methoxy—4,4-dimethyl-12,3,4— tetrahydronaphthalenyl]amino}pyrimidin-4—yl)oxy]cyclopentyl}methyl sulfamate; {(1S,28,4R)—2—hydroxy—4-[(6-{{(1S,2R)—2—methoxy-4,4-dimethyl-1 ,2,3.4- tetrahydronaphthalenyl]amino}pyrimidinyl)oxy]cyclopentyl}methyl sulfamate; and [(1 S,2$,4R)-4—({4—[(1S)-2,3-dihydro-1H-indenylamino]-1 ,3,5-triazin-2—yl}amino)—2— hydroxycyclopentyl]methyl sulfamate.
Claiborne et al. further report that the compounds in the following Table 2 exhibited IC50 values greater than 500 anl and less than 10 (M in this NAE assay orne Example 137).
Table 2 [(1R,2R,38,4R)-4—({2—[(cyclohexylmethyl)amino]pyrimidin—4—yl}amino)-2,3- oxycyclopentyl]methyl sulfamate ((1R,2R,3S,4R)—4—{[2—(benzylamino)pyrimidin—4—yl]amino}-2,3-dihydroxycyclopentyl)— methyl sulfamate {(1R,2R,38,4R)-2,3-dihydroxy-4—[(pyridinylcarbonyl)amino]cyc|opentyl}methyl sulfamate [(18,28.4S)—4—({6-[(1 S)-2,3-dihydro—1H-indenylamino]pyrimidinyl}methyl)—2— hydroxycyclopentyllmethyl sulfamate 8,4R)—4—[(2-{[(1S)chloro-3,3-dimethyl-2,3-olihydro-1H-indenyl]amino}- pyridinyl)oxy]hydroxycyclopentyl}methyl sulfamate {(18,28,4R)-2—hydroxy—4—[(7—methylphenyl-7H-purinyl)amino]cyclopentyl}methyl sulfamate {(1S,28,4R)[(8-biphenyl—Z—yl-QH-purin—B-yl)amino]hydroxycyclopentyl}methyl ((1S,ZS,4R){[6-({(1S,2R)—2—[(dimethylamino)methyl]—2,3-dihydro—1 H-indenyl}- amino)pyrimidinyl]oxy}-2—hydroxycyclopentyl)methyl sulfamate [(1S,28,4R)({6-[(1S)-2,3-dihydro-1 H-indeny|amino]oxo-2,3-dihydropyrimidin—4- yl}amino)—2—hydroxycyclopentyl]methyl sulfamate ((1S,ZS,4R){[6-({(1S,28)[(dimethylamino)carbonyl]—2,3-dihydro-1 H-inden-t-yl}- amino)pyrimidin-4—yl]oxy}-2—hydroxycyclopentyl)methyl sulfamate {(1S,28,4R)hydroxy-4—[(6—{[(1S,2R)methoxy-2,3-dihydro-1H-inden—2-yl]oxy}- pyrimidin-4—yl)oxy]cyclopentyl}methyl sulfamate {(1S.28,4R)hydroxy[(6—{[(1R,28)methoxy—2,3-dihydro—1H-indenyl]oxy}- pyrimidin-4—yl)oxy]cyc|opentyl}methyl sulfamate {(18,28,4R)[(9-benzyl-9H-purinyl)oxy]hydroxycyciopentyl}methyl suifamate ((18,28,4R)hydroxy{[6-(2-phenylethyl)pyrimidin-4—yl]amino}cyciopentyl)methyl sulfamate ((1R,2R,38,4R)—2.3-dihydroxy-4—{[6—(2-phenylethyl)pyrimidinyl]amino}cyclopentyl)- methyl sulfamate {(1 R,2R,3S,4R)—4—[(6-{[(18,28)-(benzyloxy)cyclopentyl]amino}pyrimidinyl)amino]- 2,3-dihydroxycyclopentyl}methyl sulfamate [(18,2S -({2-[(18)--2,3-dihydro-1H-i-nden--_1-yiamino]pyridin-4—y|}oxy)—2- hydroxycyclopentyl]methyl sulfamate {(18,28,4R)hydroxy[(6-{[(1 R,28)—2-methoxy—2,3-dihydro-1H-inden—1-yl]oxy}- pyrimidinyl)oxy]cyclopentyl}methyl sulfamate {(1S,28,4R)hydroxy{(6-{[(18,2R)methoxy-2,3-dihydro-1H-indeny[]oxy}- dinyl)oxy]cyclopentyl}methyl sulfamate (1 S,28,4R)—2—(hydroxymethy!)—4—{[8-(5,6,7,8—tetrahydronaphthaleny|)-9H-purinyl]- amino}cyclopentanol [(1R,2R,38,4R)—4—({2—[(1S)—2,3-dihydro—1H-indeny|amino]—5-fluoropyrimidiny|}- amino)—2, 3-dihydroxycyclopentyi]methyl sulfamate {(18,28 ,4-R)hydroxy[(6—phenylpyrimidin—4—yl)oxy]cyclopentyl}methyl sulfamate ((18,28,4-R)-2hydroxy—4-{E6-(1 hylmethoxy)pyrimidinyl]oxy}cyclopentyl)methyl sulfamate ((18,28,4R){[6-(1,3-dihydro—2H-isoindolyl)pyrimidinyl]oxy} hydroxycyclopentyl)methyl sulfamate {(1 8,28,4R)hydroxy[methy|(9-methyl-8—phenyi-9H-purinyl)amino]cyclopentyl}- methyl ate |-127 ((18,28,4-R){[6-(cyclopentylamino)pyrimidin—4—yl]oxy}-2—hydroxycyclopentyl)methyl sulfamate {(1S,28,4R)—4—[(6-benzylpyrimidinyl)oxy]hydroxycyclopentyl}methyl sulfamate (18,28,4R){[8-(2,3-dihydro—1 ,4—benzodioxiny|)-9H-purinyl]amino} (hydroxymethyl)cyclopentanol ((1S.28,4R)—2—hydroxy—4-{[6—(2—naphthylmethoxy)pyrimidin—4—yl]oxy}cyclopentyl)methyl sulfamate {(18,28,4R)[(6-{[(1S,2R)—2,T-dimethoxy-1 —tetrahydronaphthaieny|]amino}- pyrimidinyl)oxy]hydroxycyclopentyl}methyl sulfamate {(18,28,4R)—4—[(6-{[(1R,28)-2,7-dimethoxy-1 -tetrahydronaphthalen—1-yl]amino}- pyrimidinyl)oxy]—2-hydroxycyclopentyl}methyl sulfamate ((1S,38)—3-{[8-(1-naphthyl)—9H-purin-B-yl]oxy}cyclopentyl)methyl sulfamate rne et al. also report that the compounds in the following Table 3 exhibited IC5D values greater than 10 pM in this NAE assay (Claiborne Example 137).
Table 3 {(1R,2R,3S,4R)[(6-aminomethylpyrimidin-4—yl)amino]-2,3-dihydroxycyclopentyl}s methyl ate R,3S,4R)({2-[benzyl(methyl)amino]pyrimidin-4—yl}amino)-2,3— dihydroxycyclopentyflmethyl sulfamate [(1R,2R,38,4R)({6-[benzyl(methyl)amino]pyrimidin-4—yl}amino)-2,3— dihydroxycyclopentyllmethyl sulfamate {(1R,2R,3S,4R)-2,3—dihydroxy—4—[(pyridin-2—ylcarbonyl)amino]cyclopentyl}methyl sulfamate R,3S,4R)—4—{[6-(benzylamino)—2—methylpyrimidin—4—yl]amino}-2,3- oxycyclopentyl)methyl sulfamate [(18,28,4R)~4-({6—[(1 S)—2,3-Dihydro—1H—inden—1-ylamino]pyrimidinyl}oxy)—2- hydroxycyclopentyl]methyl sulfamate [(1R,3R,4R)—3—({6—[(1S)—2,3-dihydro-1H-indenylamino]pyrimidin-4—yl}amino)—4- hydroxycyclopentyl]methyl sulfamate ((1S,28,4R)—4—{[6-(3,4—dihydroisoquinolin—2(1H)—yl)pyrimidinyl]oxy} hydroxycyclopentyl)methyl sulfamate 4..a: [(1S,3R,4R)—3—({6—[(1S)-2,3-dihydro-1H-indenylamino]pyrimidinyl}amino)—4- hydroxycyclopentyl]methyl sulfamate {(1R,2R,3S.4R)-4—[(6—{[(1R,2R)—2—(benzyloxy)cyclopentyl]amino}pyrimidinyl)amino]— 2,3—dihydroxycyclopentyl}methyl sulfamate [(1 R)-4—({6—[(4—chlorobenzyl)oxy]pyrimidinyl}oxy)—2—hyd roxycyclopentyi] methyl sulfamate [(1S,28,4R)—2—hydroxy—4—(pyrimidinyloxy)cyclopentyllmethyl sulfamate {(1R,2R,3S,4R)—4—[(2—{[(1S)—2,3—dihydro-1 n—1-ylamino]carbonyl}pyridinyl)— amino]—2,3—dihydroxycyclopentyl}methyl sulfamate ((1R,2R,33,4R)—4—{[2—(2,3-dihydro-1H-indolylcarbonyl)pyridin—4—yl]amino}-2,3- dihydroxycyclopentyl)methyl sulfamate Claiborne et al. also report sumo-activating enzyme (SAE) and ubiquitEn-activating enzyme (UAE) HTRF assays in Example 137. However, no IC50 values are reported. [031} As shown in the Figures, the plasma AUC for l-216 administered at 10 mglkg (Figure 1) is comparable to that observed for l-115 administered at 30 mgfkg (Figure 2), and approximately half the AUC observed for l-216 administered at 30 mglkg (Figure 3). Thus. compound l-216 is expected to be a 2- to 3-fold more potent inhibitor of NAE than H15.
The term " is used herein to mean approximately, in the region of, roughly, or . When the term "about" is used in conjunction with a numerical range, it modifies that range by extending the boundaries above and below the numerical values set forth. Unless othenivise specified, the term " is used herein to modify a numerical value above and below the stated value by a variance of 10%.
Unless othenivise specified. the terms "include" and "including" and the like are intended to be non-limiting. For example, "including" means including but not limited to, unless ise indicated.
In the compounds described herein, where relative stereochemistry is , the diastereomeric purity of the compound preferably is at least 80%, more ably at least 90%, still more preferably at least 95%, and most preferably at least 99%. As used herein, the term “diastereomeric purity” refers to the amount of a compound having the depicted relative stereochemistry, expressed as a percentage of the total amount of ail diastereomers present.
Preferably, the enantiomeric purity of the compound is at least 80%, more preferably at least 90%, still more preferably at least 95%, and most preferably at least 99%. As used herein, the term “enantiomeric purity” refers to the amount of a compound having the depicted absolute stereochemistry, expressed as a percentage of the total amount of the ed compound and its enantiomer.
Methods for determining diastereomeric and enantiomeric purity are well-known in the art. Diastereomeric purity can be determined by any analytical method e of quantitatively guishing between a compound and its diastereomers. Examples of suitabte analytical methods include, without limitation, r magnetic resonance spectroscopy (NMR), gas chromatography (GC), and high performance liquid tography (HPLC). Similarly, enantiomeric purity can be determined by any analytical method capable of tatively distinguishing between a compound and its enantiomer. Examples of suitable analytical methods include, without limitation, GO or HPLC, using a chiral column packing material.
Enantiomers may also be distinguishable by NMR if first derivatized with an lly ed derivatizing agent, e.g., Mosher's acid.
As used herein, "crystalline" refers to a solid in which the constituent atoms, molecules, or ions are packed in a regularly ordered, repeating three-dimensional pattern having a highly regular chemical structure. in particular, a crystalline salt may be produced as one or more crystalline forms. For the purposes of this application, the terms “crystalline form" and orph” are synonymous; the terms guish between crystals that have ent properties (e.g., different XRPD patterns, different DSC scan results). Pseudopolymorphs are typically different solvates of a material, and thus their properties differ from one another. Thus, each distinct polymorph and pseudopolymorph is considered to be a distinct crystalline form herein.
"Substantially crystalline" refers to salts that are at least a particular weight percent crystalline. ular weight percentages include 50%, 60%, 70%, 75%, 80%, 85%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5% and 99.9%. In some embodiments, substantially crystalline refers to salts that are at least 70% crystalline. In some embodiments, substantially crystalline refers to salts that are at least 80% crystalline. In some ments, ntially crystalline refers to salts that are at least 85% crystalline. In some embodiments. substantially crystalline refers to salts that are at least 90% crystalline. In some embodiments, substantially crystalline refers to salts that are at least 95% crystalline.
The term “solvate or solvated" means a physical association of a compound of this invention with one or more solvent les. This physical association includes hydrogen bonding. In certain instances the solvate will be capable of ion, for example when one or more solvent molecules are incorporated in the l lattice of the crystalline solid. "Solvate or solvateci" encompasses both solution-phase and isolable solvates. Representative solvates e, for example, hydrates, ethanolates, and methanolates.
The term “hydrate" refers to a solvate wherein the solvent molecule is H20 that is present in a defined stoichiometric amount, and includes, for example, hemihydrates, drates, ates, and trihydrates.
The term “mixture" refers to the ed components of the mixture regardless of the state of the combination (e.g., liquid or liquid] crystalline).
The term “seeding" refers to the addition of crystalline material to a solution or mixture to initiate crystallization. {043] Some embodiments of the invention are directed to the l-216 hydrochloride salt, wherein at least a particular percentage by weight of the hloride salt is crystalline. In some embodiments, the hydrochloride salt is substantially crystalline. Examples of a crystalline or substantially crystalline hydrochloride salt include a crystalline form of the hydrochloride salt or a mixture of different crystalline forms. Some embodiments of the invention are directed to a hydrochloride salt, wherein at least a particular percentage by weight of the hydrochloride salt is crystalline. Particular weight percentages include 10%, 20%, 30%, 40%, 50%, 60%, 70%, 75%, 80%, 85%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5% and 99.9%. When a particular percentage by weight of the hydrochloride salt is lline, the remainder of the hydrochloride salt is the amorphous form of the hydrochloride salt.
Some embodiments of the invention are directed to the l-216 hydrochloride salt being a crystalline form, or being substantially a crystalline form. The crystalline form may be a particular percentage by ”weight of the crystalline hloride salt. Particular weight percentages include 10%, 20%, 30%, 40%, 50%, 60%, 70%, 75%, 80%, 85%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5% and 99.9%. When a particular percentage by weight of the hydrochloride salt is a ated crystalline form, the der of the hydrochloride salt is some combination of the amorphous form of the hydrochloride salt, and one or more lline forms of the hydrochloride salt excluding the designated lline form. in some embodiments, the hydrochloride salt is at least 90% by weight of a crystalline form. In some embodiments, the hydrochloride salt is at least 95% by weight of a crystalline form. In some embodiments, the hydrochloride salt is at least 80% by weight of a crystalline form. In some embodiments, the hydrochloride salt is at least 85% by weight of a crystalline form.
Unless vise specified, when a crystalline form of the hydrochloride salt is identified using one or more XRPD peaks given as angles 29, each of the 28 values is understood to mean the given value :I: 0.2 degrees.
Throughout the specification and claims, when a crystalline form of the hydrochloride salt is fied using one or more temperatures from a D50 profile (e.g., onset of endothermic transition, melt, etc), each of the ature values is understood to mean the given value :I: 2 °C.
SOLID STATE FORMS Provided herein is an assortment of characterizing information to describe crystalline form 1 (Form 1) of the hydrochloride salt of i-216. [048} Figure 4 shows an X-ray powder diffraction (XRPD) pattern of Forml of the hydrochloride salt of I-216 obtained using CuKa radiation. Peaks identified in Figure 4 include those listed in Table 4.
Table 4 | Angle I |ntensity% I 2012/052007 Ila-— —mz- _m=l- _-§I- —-E- _-§E- —-EE- In some embodiments, Form I is characterized by an XRPD pattern having peaks at 26 angles of 45°, 152°, 21.3“, 21 .8° and 24.0°. In some embodiments, Form I is characterized by an XRPD pattern having peaks at 26 angles of 4.5°, 7.5“, 14.4", 146°, 152°, 15.9°, 19.5°, 21.3“, 21.8°, 22.4”, 22.7”, 24.0" and 248°. In some embodiments, Forml is characterized by an XRPD pattern having peaks at 26 angles of 45°, 7.5°, 86°, 9.8°, 13.3“, 14.4°, 14.6", 152°, 156°, 17.2", 19.5”, 206°, 21.3“, 21.8“, 224°, 22.7“, 240°, 24.8", 257° and 26.4°. In some embodiments, Form I is characterized by an XRPD pattern substantially as shown in Figure 4. {050] In some embodiments, Form I is characterized by an XRPD pattern having a reference peak with a 26 angle of 4.5 :I: 0.3”, and having peaks at 26 angles of 10.7°, 168°, 17.30 and 19.5“ relative to the reference peak. The term "reference peak" refers to a peak in the XRPD diffractogram that one skilled in the art considers as informing the polymorphic form of the material, i.e., entiated from ment noise. By "relative" it is meant that the observed 26 angle of each peak will be the sum of the 26 angle of the reference peak and the relative 26 angle of that peak. For example, if the reference peak has a 26 angle of 4.4“, the relative peaks will have 26 angles of 15.1°, 21 .2°, 21.7° and 239°; if the reference peak has a 26 angle of 4.5“, the relative peaks will have 26 angles of 15.2“, 21.3“, 21 .8° and 240°; if the nce peak has a 26 angle of 4.6“, the relative peaks will have 26 angles of 15.3”, 21.4°, 21 .9° and 24.1 °; etc. In some embodiments, Form I is characterized by an XRPD pattern having a reference peak with a 26 angle of 4.5 :I: 0.3“, and having peaks at 26 angles of 3.0“, 9.9“, 10.1“, 10.7“, 11.4“, 15.0“, 16.8“, 17.3“, 17.9“, 18.2“, 19.5“ and 20.3“ ve to the reference peak. In some embodiments, Form I is characterized by an XRPD pattern having a reference peak with a 26 angle of 4.5 i 0.3“, and having peaks at 26 angles of 3.0“, 4.4“, 5.3“, 8.8“, 9.9“, 10.1“, 10.7“, 11.4“, 12.7“, .0“, 15.5“, 16.8“, 17.3“, 17.9“, 18.2“, 19.5“, 20.3“, 21.2“ and 21.9“ relative to the reference peak. Any of the peaks that one skilled in the art considers as informing the polymorphic form of the material can serve as the reference peak and the relative peaks can then be calculated.
For example, if the reference peak has a 26 angle of 24.0“, than the relative peaks will have 26 angles of -19.5“, -8.8“, -2.7“ and -2.2° relative to the nce peak. Figure 5 shows a differential scanning calorimetry (DSC) profile of Form I. The DSC thermogram plots the heat flow as a function of temperature from a sample, the temperature rate change being about 10 . In some embodiments, Form I is characterized by a D80 profile substantially as shown in Figure 5. Figure 5 shows an endotherm event with onset of about 129.8“0 and peak at about 135.6°C corresponding to the loss of water coupled with melting. A broad erm with an onset of about 181.6“C and peak at about 195.5°C, and a sharp endotherm with an onset of about C and peak at about 275.5“C are also observed.
Figure 6 shows a thermal gravimetric analysis (TGA) profile of Form I of the hydrochloride salt of l-216. The TGA thermogram plots the percent loss of weight of the sample as a function of temperature, the temperature rate change being about 10 . Figure 6 shows approximately 3.7 “lo weight loss between 100°C to 150°C, suggesting that I-216 HCI Form I is a monohydrate. In some embodiments, l-216 HCI Form I is characterized by a TGA profile substantially as shown in Figure 6. Karl Fischer measurements show a water content of about 3.5 %, r suggesting that the loss of weight seen in the TGA profile is due to the loss of water, indicating Form I is a monohydrate.
WO 28832 Figure 10 shows an X-ray powder diffraction (XRPD) pattern of Form II of the hydro- chloride salt of l-216 obtained using CuKa radiation. Peaks identified in Figure 10 include those listed in Table 5.
Table 5 Angle 2-Theta ° intensity % 3.261 4.269 24.9 8.693 81.3 1 1.1 2.6 1 1.252 3.8 12.426 18.4 13. 1 1 5 3.3 13.522 14.529 13 .176 37.4 .708 16.574 17.253 11.3 18.202 12 18.495 19.579 37.2 .014 27.6 .813 20.1 22.004 18.4 _-=1- In some embodiments, Form II is terized by an XRPD pattern having peaks at 26 angles of 87°, 152°, 15.7°, 19.8° and 242°. In some embodiments, Form II is characterized by an XRPD pattern having peaks at 26 angles of 4.3°, 8.7°, 152°, 15.7°, 196°, 200°, 20.8°, 225°, 23.1° and 242°. In some embodiments, Form II is characterized by an XRPD pattern having peaks at 26 angles of 43°, 8.7°, 124°, 145°, 152°, 15.7°, 173°, 182°, 18.5°, 19.6“, .0°, 20.8°, 220°, 225°, 23.1°, 242°, 247°, 257°, 282° and 29.4”. In some embodiments, Form II is characterized by an XRPD pattern substantially as shown in Figure 10.
In some embodiments, Form II is characterized by an XRPD pattern having a reference peak with a 26 angle of 8.7 i 0.3”, and having peaks at 26 angles of 6.5°, 7.0”, 10.9“ and 155" relative to the reference peak. The terms "reference peak" and "relative" have the same meaning as usly described. In some embodiments, Form II is characterized by an XRPD n having a reference peak with a 26 angle of 8.7 :l: 0.3", and having peaks at 26 angles of -4.4°, 6.5°, 7.0°, 109°, 11.3", 121°, 133°, 14.4°, and 15.5°, relative to the reference peak. In some embodiments, Form II is characterized by an XRPD n having a reference peak with a 26 angle of 8.7 :l: 0.3", and having peaks at 26 angles of -4.4°, 3.7", 5.8", 6.5°, 7.0°, 8.6°, 9.5°, 9.8°, 10.9°, 11.3", 13.3", 138°, 14.4”, 15.5°, 160°, 17.0°, 195° and 20.7” relative to the reference peak. Any of the peaks that one skilled in the art considers as infbrming the polymorphic form of the material can serve as the reference peak and the relative peaks can then be calculated. For example, if the reference peak has a 26 angle of 24.2”, then the relative peaks will have 26 angles of -15.5°, -9.0°, -8.5° and -4.6° ve to the reference peak.
TIC METHODS Compound I-216 can be prepared by methods known to one skilled in the art and/or by reference to the schemes shown below and the examples that follow. Exemplary synthetic routes are set forth in Schemes 1-4 below, and in the Examples below.
Scheme 1 PCT/U82012/052007 (R, R)—N, N'—Bis(3,5-di—tert— butylsalicylidene) 1) oleuml (3| -1,2-cyclohexanediamino- CHSCN CI Mn-Cl HIGH NaOCIlPaNO 2) Hgolheat :NH2 (1) 0° 1 hr, RT1 hr 0H CI 0% e HO mm“ - sq. NaOH Cl\©:>-'|0H DIPEA —> NH; ; (5) 0 Cl cu ‘N Mel. THF " CI 0 o —b- hydrazine m' ' 'OMe 0 KOtBu 0 —_~+ (slow addition) ethanol NH2 (3) (7) Scheme 1 describes the synthesis of (1R,28)—5-chIoro—2-methoxyindanamine (8) which is further exemplified in Example 1 below. 6-chloro-1H-indene (1) was epoxidized using the en catalyst to give oxirene (2) which was treated with fuming sulfuric acid in acetonitrile which led, after the addition of water and g to R,28)—1-amino indan-Z-ol (3). Rel-(1R,23)amino—5—chloroindan-Z—ol (3) was chirally resolved using D- (-)-mandelic acid to give (1R,28)aminochloroindan-2—ol (5) after removal of the chiral auxiliary. Protection of the primary amine in (5) was achieved using phthalic anhydride leading to compound (6). Methylation of the hydroxyl group with methyl iodide lead to compound (7), which was subsequently deprotected with hydrazine to give the desired (1R,2$)—5-chloro-2— methoxyindanamine (8).
Scheme 2 2012/052007 HO TBSO enzymatic T850 T830 l,“ TBSCI \m resolution \,,, TBSCI \. . . <1 ‘. :1, 4h ‘. rt, 24h ; T330 Ho‘ Ho‘ Ho‘ (9) (10) (11) (12) racemic racemic catechoiborane Rh catalyst CI CI b” cr \ N "rose I I NJ h, OH \ , H0 ”J TBS? o I? g \i... 0 N 0.5% HCIIEtOH m. CI N 4— TBSO TBSO‘C T335 NaH (15) (14) (13) n—BuOH. DIPEA. 148 °C ‘OMB (OMe ..\OMe \ N O | Hszé'O H2N\:HO ) HQ‘ N/J 1. chioro— H (1%),”OI 0 ’AHC O '\ MOI sulfonamide O Dior"!G HCI c. 2 ' 12M HCI g CHacN H0 T380 H0 (16) L216 l-216 HCI Scheme 2 shows the synthesis of {(1S,ZS,4R)[(6-{[(1R,ZS)—5-chloromethoxy-2,3- o-1H-indenyl]amino}pyrimidinyl)oxy]—2—hydroxycyclopentyl}methyl sulfamate HCI Form 1 which is further exemplified in Example 2 below. The primary alcohol of racemic-(9) was ted as the teit-butyldimethylsilyl ether to give compound (10) which was enzymatically resolved using Candida Antartica on c resin to give compound (11) with an enantiomeric excess of greater than 99%. The secondary alcohol in (11) was then protected as its tert—butyldimethylsilyl ether to afford (12). Compound (12) was treated with catechol borane in the presence of Wilkinson’s catalyst to afford (13) which was further reacted with 4,6- dichloropyrimidine to afford compound (14). The primary alcohol of (14) was selectively deprotected and then the indane portion of the molecule was installed by reaction of (15) with (1 R.28)- 5-chloro-2—methoxyindan-‘i-amine (8) to afford compound (16). l-216 was prepared by reacting compound (16) with sulfonamide, followed by deprotection of the secondary alcohol under acidic conditions. l-216 was treated with hydrochloric acid in acetonitrlle to afford Form | of the hydrochloride salt of l-216.
Scheme 3 CH(OCH3)3 C' H2804 (R)—tert-butyl 0' .
Phl(OH)(OTs) 0/ sulfinamide MeOH Ti(OEt)4 Cmfiy/| , \(E) 0 o N 0‘ , (17) Step 1 (13) Step 2 (19) “8‘2 1 ) N BHa 4 Step3 and 4 2) HCI NH30| (20) Scheme 3 describes the preparation of (1R,ZS)chloromethoxy-2,3-dihydro-1H- indenamine hydrochloride (20) which is further exemplified in Example 4 below. 5-chloro-2,3- dihydro-1H-indenone (17) was reacted with trimethylorthoformate under acidic conditions, ed by treatment with Koser’s reagent [Phl(OH)(OTs)] to give ro-2—methoxy—2,3- o-1H-indenone (18). The ne was treated with (R)-tert—butyl sulfinamide in the presence of titanium tetraethoxide to afford the corresponding sulfinamide (19). The reaction was allowed to proceed until less than 5% of the undesired reoisomer could be detected by HPLC. The crude sulfinamide was reduced using NaBH4 to afford the primary amine which was treated with hydrochloric acid to afford (1R.2S)chIoro—2-methoxy-2,3—dihydro-1H—inden- 1-amine hydrochloride (20).
Scheme 4 1) LDA MTBE T) Pd, BaSO4 W‘s, ‘0 (z: ".~ -15°C ll‘oms / (5) BnO R H2 100pSi , BnO 1R) Ola-50H BnOvis; 2) TMSCI BnOx‘iS) 2) 1M HClaq Bnox‘ts) (21) Step 1 (22) Step 2 (23) 1) MsCI , EtaN Step 3 2) Bu4NOAc - 3) 1M NaOHaq H0516) CI BnO—h’ . 1 {5) I S / N 30's ' ‘Q" and-(‘50:) / N DCP,NaH BnO/"-H «R: \ J DCM o°c \ J 0 c0 0 N . o N THF, and‘3’ StHP 5 Step 4 (25) (25) (24) NMP 130°C , Step 6 50psi (20) (51.9 x (5) (\0x (a); x. 1) BocNHsog- m (R) (R) DABCO NH NH NH CI NMP ACN 23°C 6M HCI aq KJN , 0. CI 2) HCI KJ'N lPA, IPAc KJN \ O \N Step 7 0 N 0 \N Step 3 (R) l“) l“) HCI /In('3) (I? /|..(~S) .- || /1|‘5) HO 5(5) HZN—§_O :13; HzN—fi—O HO Hats: 0 HO 0 (27) l-216 L215 HCI Form I Scheme 4 shows a route for the preparation of l-216 hydrochloride salt Form l which is further exemplified in Example 5 below. The e in (1S,2R,3S,5R)—3-(benzyloxy)-2— (benzyloxymethyl)oxabicyclo[3.1.0]hexane (21). was ring opened by treatment with lithium ropylamide and the resulting anion was d by treatment with trimethylsilylchloride to afford (22). The double bond was reduced using en and a PdlBaSO4 catalyst and the trimethylsilyl protecting group was removed to afford secondary alcohol (23). Secondary alcohol (23) was mesylated and then treated with tetrabutylammonium acetate followed by sodium ide to afford (24) which was {reacted with sodium hydride and 4,6- dichloropyrimidine to afford intermediate (25). Removal of the benzyl protecting groups using boron trichloride to afford (26) followed by reaction with (1R,23)—5-chloromethoxy-2,3- dihydro—‘tH-inden-‘l-amine hydrochloride (20) at 130 ”C and 50 psi led to the formation of ((1 S,2S,4R)—4—(6—((1 R,28)ch|oro-2—methoxy-2,3-dihydro-‘l H-indeny|amino)pyrimidin yloxy)—2—hydroxycyclopentyl)methyl sulfamate (27). The primary alcohol in compound (27) was sulfamated to afford I-216. Form l of the hydrochloride salt of l-216 was generated by treatment of l-216 in isopropyl alcohol with 6M hydrochloric acid followed by addition of isopropyl acetate as an anti-solvent.
USES The chemical entities of this invention are useful inhibitors of E1 enzyme activity. In particular, the chemical entities are designed to be inhibitors of NAE. Inhibitors are meant to include chemical entities which reduce the promoting effects of E1 enzymes in ubl (in particular, Nedd8) conjugation to target proteins (6.9., reduction of ubiquitination, neddylation), reduce intracellular signaling mediated by ubl (in ular, Nedd8) conjugation, and/or reduce proteolysis mediated by ubl (in particular, Nedd8) conjugation (e.g., inhibition of cullin-dependent ubiquitination and proteolysis (e.g., the ubiquitin—proteasome pathway)). Thus, the chemical entities of this invention may be assayed for their ability to inhibit the E1 enzyme in vitro or in vivo, or in cells or animal models according to methods provided in further detail herein, or methods known in the art. The chemical entities may be assessed for their ability to bind or mediate E1 enzyme activity directly. Alternatively, the activity of the chemical entities may be assessed through indirect cellular assays, or assays ing downstream s of E1 activation to assess inhibition of downstream effects of E1 tion (e.g., inhibition of - dependent ubiquitination and proteolysis). For example, activity may be assessed by detection of njugated substrates (e.g., ubl-conjugated E2s, ated cullins, ubiquitinated substrates); ion of downstream protein substrate stabilization (e.g., stabilization of p27, stabilization of IKB); ion of inhibition of UPP ty; detection of downstream effects of protein E1 inhibition and substrate ization (e.g., reporter assays, e.g., NFKB reporter assays, p27 reporter ). Assays for assessing activities are described below in the Experimental section and/or are known in the art.
It will be appreciated that the al entities of this invention may be derivatized at functional groups to e prodrug derivatives which are capable of conversion back to the parent chemical entities in vivo. Examples of such prodrugs include the physiologically acceptable and metabolically labile derivatives. More specifically, the prodrug of the chemical entity of this invention is a carbamate or amide of the -NH- group of the chemical entity, or an ether or ester of the -OH group of the al entity.
Such ate prodrugs of the -NH- group of the chemical entity include the following ates: 9-fluorenylmethyl, 9-(2-sulfo)fluorenylmethyl, 9-(2,7-dibromo)fluorenylmethyl, 17— tetrabenzo[a,c,g,:]fluorenylmethyl, 2-chloroindenylmethyl, benz[flindenylmethyl, 2,7,di—tert- butyl-[9-(10,10ldioxo-10,10,10,10-tetrahydrothioxanthyl)]methy|, 1,1-dioxobenzo[b]thiophene—2— yl-methyi, trichloroethyl, 2-trimethylsilylethyl, 2-phenylethyl, 1-(1~adamantyI)methylethyl, roethyl, 1,1-dimethyi-2—haloethyl, 1,1~dimethyl-2,2-dibromoethyl, 1,1-dimethyl-2,2,2— trichloroethyl, 1-methyl(4-biphenylyl)ethyl, 1-(3,5-di-tert-butylphenyI)methy|ethy|, 2-(2’-and 4'-pyridyl)ethyl, 2,2-bis(4’-nitrophenyl)ethyl, N-2—pivaloylamino)—1,1-dimethylethyl, 2-[(2- nitrophenyl)dithio]—1-phenylethyl. 2-(MN-dicyclohexylcarboxamideo)ethyl. tert-butyl, 1- adamantyl, 2-adamantyl, vinyl, allyi, ropylallyl, yl, 4-nitrocinnamyl, 3-(3'- l)propenyl, 8-quinolyl, N-hydroxypiperidinyl, alkyldithio, benzyl, para-methoxybenzyl, para-nitrobenzyl, para-bromobenzyl, para—chlorobenzyl, 2,4—dichlorobenzyl, 4- methylsulfinylbenzyi, 9-anthrylmethyl, diphenylmethyl, phenothiazinyI-(10)—carbonyl, N’—para- toluenesuifonylaminocarbonyl and N’-phenyiaminothiocarbonyl.
Such amide prodrugs of the -NH- group of the chemical entity include the following amides: N-formyl, N-acetyl, N—chloroacetyl, N-trichloroacetyl, uoroacetyl, ylacetyl, Nphenylpropionyl, Npentenoyl. N-picolinoyl, Npyridylcarboxamido, N- benzoylphenylalanyl, oyl and N-para—phenylbenzoyl.
Such ether prodrugs of the -OH group of the chemical entity include the following ethers: methyl, methoxymethyl, methylthiomethyi, ldimethylsi|y|)methoxymethyl, benzyloxymethyl, para-methoxybenzyloxymethyl, para-nitrobenzyloxymethyl, ortho— nitrobenzyloxymethyl, (4-methoxyphenoxy)methyl, guaiacolmethyl, tert-butoxymethyl, 4— pentenyloxymethyi, siloxymethyl, oxyethoxymethyl, 2,2,2—trichloroethoxymethyl, bis(2— chloroethoxy)methyl, 2-(trimethylsi|y|)ethoxymethyl, menthoxymethyl, tetrahydropyranyl, 3— bromotetrahydropyranyl, tetrahyd rothiopyranyl, 1-methoxycyclohexyl, 4— methoxytetrahydropyranyl, 4-methoxytetrahydrothiopyranyl, oxytetrahydrothiopyranyl S,S-dioxide, 1-[(2-chIoromethyl)phenyl]—4—methoxypiperidin—4—yl, 1-(2-fiuorophenyl)—4- methoxypiperidin-4—yl, 1 ,4-dioxanyl, tetrahydrofuranyl, tetrahydrothiofuranyl, 2,3,3a,4,5,6,7,7a-octahydro-7,8,8.-trimethyl—4,7-methanobenzofuranyl, 1-ethoxyethyl, 1-(2- chloroethoxy)ethyl. 1-[2-(trimethylsilyl)ethoxy]ethy|, 1-methylmethoxyethyl, 1-methyl benzyloxyethyl, 1-methy|benzy|oxy-2—fluoroethyl, 1-methylphenoxyethyl, 2,2,2,- - trichloroethyi, 1,1-dianisyI—2,2,2,-trichloroethyl, 1,1,1,3,3,3-hexafluoro—Z-phenylisopropyl, 2- trimethylsilylethyl, 2-(benzylthio)ethyi, 2—(phenyiselenyl)ethyi, tert-butyl, allyl, gyl, para- phenyl. para-methoxyphenyl, para-nitrophenyl, 2,4—dinitrophenyi, 2,3,5,6-tetrafluoro trifluoromethyl)phenyl, benzyl, para-methoxybenzyl, 3,4-dimethoxybenzyl, orthomnitrobenzyi, para-nitrobenzyl, para-halobenzyl. 2.6-dichlorobenzyl, para-cyanobenzyl, para-phenylbenzyl, 2,6-difluorobenzyl, para-acylaminobenzyl, para—azidobenzyl, 4—azidochlorobenzyl. 2- trifluoromethylbenzyl, methylsulfinyl)benzyl, 2-picolyl, 4-pjcolyl, 3-methylpicolyl N-oxido, 2-quinolinylmethyl, 1-pyrenylmethyl, diphenylmethyl, p,p'—dinitrobenzhydryl, nzosuberyl, triphenylmethyl, alpha-naphthyldiphenylmethyl, para-methoxyphenyldiphenylmethyl, di(paramethoxyphenyl lmethyl, ra—methoxyphenyl)methyl, 4-(4’- bromophenacyloxy)phenyldiphenylmethyl, ”-tris(4,5-dichlorophthalimidophenyl)methyl, 4,4',4“-tri(levulinoyloxyphenyl)methyl, ”-tri(benzoyloxyphenyl)methyl, 4,4’-dimethoxy—3"-[N- (imidazolylmethyl)trityl, 4,4’-dimethoxy—3"’[N-imidazolylethyl]carbamoyl]trityl, 1.1-bis(4-methoxy— phenyl)—1’-pyrenylmethy|, 4-(17-tetrabenzo[a,c,g.i]fluorenylmethyl)—4,4”-dimethoxytrityl, 9- anthryl, 9-(9-phenyl)xanthenyl, 9-(9-phenyloxo)anthryl, 1 ,3-benzodithiolan-2—yl, benzisothiazolyl S,S—dioxido, trimethylsilyl, triethylsilyl, triisopropylsilyl, dimethylisopropylsilyl, lisopropylsilyl, dimethylthexylsilyl, tert—butyldimethylsilyl, utyldiphenylsilyl, tribenzylsilyl, tri-para-xylylsilyl, triphenylsilyl, diphenylmethylsilyl, di-tert-butylmethyisilyl, tris(trimethylsilyl)silyl, (2-hydroxystyryl)dimethylsilyl, (2-hydroxystyryl)diisopropylsilyl, tert- butylmethoxyphenylsilyl and tert—butoxydiphenylsilyl.
Such ester prodrugs of the -OH group of the chemical entity include the following esters: formate. benzoyiformate, acetate, chloroacetate, dichloroacetate. trichloroacetate, trifluoroacetate, methoxyacetate, triphenylmethoxyacetate, yacetate, para- chlorophenoxyacetate, phenylacetate, para-P-phenylacetate, diphenylacetate, nicotinate, 3- phenylpropionate, 4-pentenoate, 4-oxopentanoate, 4,4—(ethylenedithio)pentanoate, 5-[3-bis(+ methoxyphenyl)hydroxymethylphenoxy]levulinate. ate. 1-adamantoate, crotonate, 4- methoxycrotonate, benzoate, para-phenylbenzoate and 2,4,6-trimethylbenzoate. Additionally, any physiologically acceptable lents of the present chemical entities, similar to the metabolically labile ether, esters of the -OH group, or carbamates or amides of the -NH- group, which are capable of producing the parent chemical entities described herein in vivo, are within the scope of this invention. See e.g., Greene and Wuts, Protective Groups in Organic Synthesis, 3rd Ed. John Wiley & Sons, Inc. (1999).
Some embodiments of this invention relate to a composition comprising a chemical entity of this invention and a pharmaceuticaily acceptable carrier. Some embodiments of this ion relate to a composition comprising a prodrug of a chemical entity of this invention and a pharmaceutically acceptable carrier.
If a pharmaceutically acceptable salt is the chemical entity of the invention utilized in these compositions, the salts preferably are derived from inorganic or organic acids and bases.
For reviews of suitable salts, see, 9.9., Berge et al, J. Phann. Sci. 66:1-19 (1977) and Remington: The Science and Practice of Pharmacy, 20th Ed, A. Gennaro (ed.), cott ms & Wilkins (2000) ("Remington's").
Examples of suitable acid addition salts e the following: acetate, adipate, alginate, aspartate, benzoate, benzene sulfonate, bisulfate, butyrate, citrate, camphorate, camphor ate, entanepropionate, digluconate, dodecylsulfate, ethanesulfonate, fumarate, lucoheptanoate, glycerophosphate, lfate, heptanoate, hexanoate, hydrochloride, hydrobromide, hydroiodide, 2-hydroxyethanesulfonate, lactate, maleate, methanesulfonate, 2—naphthalenesulfonate, nicotinate, oxalate, pamoate, ate, persulfate, 3-phenyl-propionate, picrate, pivalate, propionate, succinate, te, thiocyanate, tosylate and undecanoate.
Suitable base addition salts include ammonium salts, alkali metal salts, such as sodium and potassium salts, alkaline earth metal salts, such as calcium and magnesium salts, salts with organic bases, such as dicyclohexylamine salts, N-methyl—D-glucamine, and salts with amino acids such as arginine, lysine, and so forth.
Also, basic nitrogen-containing groups may be nized with such agents as lower alkyl halides, such as , ethyl, propyl, and butyl chloride, bromides and iodides; dialkyl sulfates, such as dimethyl, l, dibutyl and diamyl sulfates, long chain halides such as decyl, lauryl, myristyl and stearyl chlorides, bromides and iodides, aralkyl halides, such as benzyl and phenethyl bromides and others. Water or oil-soluble or dispersible products are thereby obtained.
The pharmaceutical itions of the invention preferably are in a form suitable for administration to a recipient subject, preferably a mammal, more preferably a human. The term “pharmaceutically acceptable carrier” is used herein to refer to a material that is compatible with the recipient subject, and is le for delivering an active agent to the target site t terminating the activity of the agent. The toxicity or adverse effects, if any, associated with the carrier preferably are commensurate with a reasonable risk/benefit ratio for the intended use of the active agent. Many such pharmaceutically acceptable carriers are known in the art. See, e.g., Remington's; Handbook of Pharmaceutical ents, 6th Ed., R.C. Rowe et al. (eds), Pharmaceutical Press (2009).
The pharmaceutical compositions of the invention can be manufactured by s well known in the art such as conventional granulating, mixing, dissolving, encapsulating, lyophilizing, or emulsifying processes, among others. Compositions may be produced in various forms, including granules, precipitates, or particulates, s, including freeze dried, rotary dried or spray dried powders, ous powders, tablets, capsules, syrup, suppositories, injections, emulsions, elixirs, sions or solutions. Formulations may optionally contain stabilizers, pH modifiers, surfactants, solubilizing agents, bioavailability modifiers and combinations of these. ceutically acceptable carriers that may be used in these compositions include ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates or carbonates, glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or olytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, nyl pyrrolidone, cellulose-based substances, hylene glycol, sodium carboxymethylcellulose, polyacrylates, waxes, polyethylene-p0lyoxypropylene-block polymers, polyethylene glycol and wool fat.
According to a preferred embodiment, the compositions of this invention are ated for pharmaceutical administration to a mammal, preferably a human being. Such pharmaceutical compositions of the present invention may be administered orally, parenterally, by inhalation spray, topically, rectally, y, buccaliy, vaginally or via an ted reservoir.
The term “parenteral” as used herein includes subcutaneous, intravenous, intraperitoneal, intramuscular, intra-articular, intra-synoviai, ternal, hecal, intrahepatic, esional and intracranial injection or infusion techniques. Preferably, the compositions are stered orally, intravenously, or subcutaneously. The formulations of the invention may be designed to be short-acting, fast-releasing, or long-acting. Still further, compounds can be administered in a local rather than systemic means, such as administration (9.9., by injection) at a tumor site.
Pharmaceutical formulations may be prepared as liquid suspensions or solutions using a liquid, such as an oil, water, an alcohol, and combinations of these. Solubilizing agents such as cyclodextrins may be included. Pharmaceutically suitable surfactants, suspending agents, or emulsifying agents, may be added for oral or parenteral administration. Suspensions may include oils, such as peanut oil, sesame oil, cottonseed oil, corn oil and olive oil. Suspension preparation may also contain esters of fatty acids such as ethyl oleate, pyl myristate, fatty acid glycerides and acetylated fatty acid glycerides. Suspension formulations may include alcohols, such as ethanol, isopropyl alcohol, cyl alcohol, ol and propylene glycol.
Ethers, such as poly(ethyleneglycol), petroleum hydrocarbons such as mineral oil and petrolatum; and water may also be used in suspension formulations.
Sterile injectable forms of the compositions of this invention may be aqueous or oleaginous suspension. These suspensions may be formulated according to techniques known in the art using suitable dispersing or wetting agents and suspending agents. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally acceptable diluent or t, for example as a solution in 1,3-butanediol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium de solution. In addition, sterile, fixed oils are tionally employed as a solvent or suspending medium. For this purpose, any bland fixed oil may be employed including synthetic mono— or di-glycerides. Fatty acids, such as oleic acid and its ide derivatives are useful in the preparation of injectables, as are natural pharmaceutically—acceptable oils, such as olive oil or castor oil, ally in their polyoxyethylated versions. These oil solutions or suspensions may also contain a long-chain alcohol diluent or dispersant, such as carboxymethyl cellulose or similar dispersing agents which are commonly used in the formulation of pharrnaceutically acceptable dosage forms including emulsions and suspensions. Other commonly used surfactants, such as , Spans and other fying agents or bioavailability enhancers which are commonly used in the manufacture of pharmaceutically acceptable solid, liquid, or other dosage forms may also be used for the es of formulation. Compounds may be formulated for parenteral administration by injection such as by bolus injection or continuous infusion. A unit dosage form for injection may be in es or in multi- dose containers.
The pharmaceutical compositions of this invention may be orally stered in any orally acceptable dosage form including capsules, tablets, aqueous suspensions or solutions.
When aqueous suspensions are required for oral use, the active ingredient is combined with emulsifying and suspending agents. If desired, certain sweetening, flavoring or coloring agents may also be added. In such solid dosage forms, the active chemical entity is mixed with at least one inert, pharmaceutically acceptable excipient or carrier such as sodium citrate or dicalcium phosphate andlor a) fillers or extenders such as starches, lactose, sucrose, glucose, mannitol, micro-crystalline ose and silicic acid, b) binders such as, for example, carboxymethylcellulose, alginates, gelatin, sucrose, and acacia, c) humectants such as ol, (1) disintegrating agents such as agar--agar, calcium carbonate, polyvinylpyrrolidinone, croscarmellose, sodium starch ate, potato or tapioca , alginic acid, certain silicates, and sodium carbonate, e) solution retarding agents such as paraffin, f) absorption accelerators such as quaternary ammonium compounds, 9) wetting agents such as, for example, cetyl alcohol and glycerol earate, h) absorbents such as kaolin and bentonite clay, and i) lubricants such as talc, calcium stearate, magnesium stearate, sodium stearyl fumarate, solid polyethylene glycols, sodium lauryl sulfate, silicon dioxide and mixtures f. In the case of capsules, tablets and pills, the dosage form may also comprise buffering agents.
The active chemical entity can also be in micro-encapsulated form with one or more ents as noted above. The solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings, release controlling coatings and other coatings well known in the pharmaceutical formulating art. In such solid dosage forms the active compound may be admixed with at least one inert diluent such as sucrose, lactose or starch. Such dosage forms may also comprise, as is normal practice, additional substances other than inert diluents, e.g., tableting lubricants and other tableting aids such a ium stearate and microcrystalline cellulose. In the case of capsules, tablets and pills, the dosage forms may also comprise buffering agents. They may optionally contain opacifying agents and can also be of a composition that they release the active ingredient(s) only, or preferentially, in a certain part of the intestinal tract, optionally, in a delayed manner.
Examples of embedding itions that can be used include polymeric substances and waxes.
Alternatively, the pharmaceutical compositions of this invention may be administered in the form of suppositories for rectal administration. These may be ed by mixing the agent with a suitable non-irritating excipient which is solid at room ature but liquid at rectal temperature and therefore will melt in the rectum to release the drug. Such materials include cocoa butter, beeswax and polyethylene glycols.
The pharmaceutical compositions of this invention may also be administered topically, especially when the target of treatment includes areas or organs readily accessible by topical application, including es of the eye, the skin, or the lower intestinal tract. Suitable l formulations are y ed for each of these areas or organs.
Topical application for the lower intestinal tract may be effected in a rectal itory formulation (see above) or in a suitable enema formulation. lly—transdermal s may also be used. For topical applications, the pharmaceutical compositions may be formulated in a suitable ointment containing the active component suspended or dissolved in one or more carriers. Carriers for topical administration of the compounds of this invention include l oil, liquid atum, white petrolatum, propylene glycol, polyoxyethylene, polyoxypropylene compound, emulsifying wax and water. Alternatively, the ceutical compositions may be formulated in a suitable lotion or cream containing the active components suspended or dissolved in one or more pharmaceutically acceptable carriers. Suitable carriers include mineral oil, sorbitan monostearate, polysorbate 60, cetyl esters wax, cetearyl l, 2-octyldodecanol, benzyl alcohol and water.
For ophthalmic use, the pharmaceutical compositions may be formulated as micronized suspensions in isotonic, pH adjusted sterile saline, or, preferably, as soiutions in isotonic, pH adjusted sterile saline, either with our without a preservative such as benzylalkonium chloride.
Alternatively, for ophthalmic uses, the pharmaceutical compositions may be formulated in an nt such as petrolatum.
The pharmaceutical compositions of this invention may also be administered by nasal aerosol or inhalation. Such compositions are prepared ing to techniques well known in the art of pharmaceutical formulation and may be prepared as solutions in saline, employing benzyl alcohol or other suitable preservatives, absorption promoters to enhance bioavailability, fluorocarbons, and/or other conventional solubilizing or dispersing agents.
The pharmaceutical compositions of this invention are particularly useful in therapeutic applications ng to disorders as described herein (e. g., eration disorders, e.g., cancers, inflammatory, egenerative disorders). The term “subject” as used herein, means an animal, preferably a mammal, more preferably a human. The term “patient" as used herein, means a human. Preferably, the composition is formulated for stration to a patient or subject having or at risk of developing or experiencing a recurrence of the relevant disorder being treated. Preferred pharmaceutical compositions of the invention are those formulated for oral, intravenous, or subcutaneous stration. However, any of the above dosage forms containing a eutically effective amount of a chemical entity of the ion are well within the bounds of routine experimentation and therefore, well within the scope of the instant invention. in n embodiments, the ceutical ition of the invention may further comprise another therapeutic agent. Preferably, such other therapeutic agent is one normally administered to patients with the disorder, disease or condition being treated.
By "therapeutically effective amount" is meant an amount of the al entity or composition sufficient, upon single or multiple dose administration, to cause a detectable decrease in E1 enzyme activity and/or the severity of the disorder or disease state being treated. "Therapeutically effective " is also intended to include an amount sufficient to treat a cell, prolong or prevent advancement of the disorder or disease state being treated (e.g., prevent additional tumor growth of a cancer, prevent additional inflammatory se), ameliorate, alleviate, e, or improve a subject’s symptoms of the a disorder beyond that expected in the absence of such ent. The amount of E1 enzyme inhibitor required will depend on the particular nd of the composition given, the type of disorder being treated, the route of administration, and the length of time required to treat the disorder. It should also be understood that a specific dosage and treatment regimen for any particular patient will depend upon a y of factors, including the activity of the c chemical entity employed, the age, body weight, general health, sex, and diet of the patient, time of stration, rate of excretion, drug ations, the judgment of the treating physician, and the severity of the particular disease being treated. In certain aspects where the inhibitor is administered in combination with another agent, the amount of additional therapeutic agent present in a composition of this invention typically will be no more than the amount that would normally be administered in a composition comprising that therapeutic agent as the only active agent.
Preferably, the amount of additional therapeutic agent will range from about 50% to about 100% of the amount normally present in a ition comprising that agent as the only therapeutically active agent.
In some embodiments, the invention relates to a method of inhibiting or decreasing E1 enzyme activity in a sample comprising ting the sample with a chemical entity of this invention, or composition comprising a chemical entity of the ion. The sample, as used herein, includes sample comprising ed or partially purified E1 enzyme, cultured cells or extracts of cell cultures; biopsied cells or fluid obtained from a mammal, or extracts thereof; and body fluid (e.g., blood, serum, saliva, urine, feces, semen, tears) or extracts thereof. Inhibition of E1 enzyme activity in a sample may be carried out in vitro or in vivo, in cellulo, or in situ.
In some embodiments, the invention provides a method forhtreating a patient having a disorder, a symptom of a disorder, at risk of developing, or experiencing a recurrence of a disorder, comprising administering to the t a chemical entity or pharmaceutical composition according to the invention. Treating can be to cure, heal, alleviate, relieve, alter, remedy, ameliorate, palliate, e or affect the disorder, the symptoms of the disorder or the predisposition toward the disorder. While not wishing to be bound by , treating is believed to cause the inhibition of growth, ablation, or killing of a cell or tissue in vitro or in vivo, or otherwise reduce capacity of a cell or tissue (9.9., an aberrant cell, a diseased tissue) to for the treatment of cancer. Thus, in an aspect, the present invention provides the use of the al entity or prodrug of the invention in the preparation of a medicament for treating cancer in a patient in need thereof. As used herein, the term “cancer” refers to a cellular disorder characterized by uncontrolled or disregulated cell eration, decreased cellular differentiation, ‐ 36 ‐ inappropriate ability to invade surrounding , and/or ability to establish new growth at ectopic sites. The term "cancer" es solid tumors and bloodborne tumors. The term “cancerf’ encompasses es of skin, tissues, organs, bone, cartilage, blood, and vessels.
The term “cancer” further encompasses primary and metastatic cancers.
In some ments, the cancer is a solid tumor. Examples of solid tumors that can be treated by the methods of the invention e pancreatic ; bladder cancer; ctal cancer; breast cancer, including metastatic breast cancer; prostate cancer, including androgen-dependent and androgen-independent te cancer; renal cancer, including, e.g., metastatic renal cell carcinoma; hepatocellular cancer; lung cancer, including, e.g., non-small cell lung cancer (NSCLC), small cell lung cancer, bronchiotoalveolar carcinoma (BAC), and adenocarcinoma of the lung; ovarian cancer, including, e.g., progressive epithelial or primary peritoneal cancer; cervical cancer; gastric cancer; esophageal cancer; head and neck cancer, ing, e.g., us cell carcinoma of the head and neck; melanoma; neuroendocrine cancer, including metastatic neuroendocrine tumors; brain tumors, including, e.g., glioma, anaplastic oligodendroglioma, adult glioblastoma multiforme, and adult anaplastic astrocytoma; bone cancer; and soft tissue sarcoma.
In some embodiments, the cancer is a hematologic malignancy. Examples of hematologic ancy include acute myeloid leukemia (AML); chronic myelogenous leukemia (CML), including accelerated CML and CIVIL blast phase (CML-BP); acute lymphoblastic leukemia (ALL); chronic lymphocytic leukemia (CLL); n's disease (HD); non-Hodgkin's lymphoma (NHL), including follicular lymphoma and mantle cell lymphoma; B-cell lymphoma; T—cell lymphoma; multiple myeloma (MM); strom‘s lobulinemia; myelodysplastic syndromes (MDS), including refractory anemia (RA), refractory anemia with ringed siderbtasts (RARS), (refractory anemia with excess blasts (RAEB), and RAEB in transformation (RAEB-T); and myeloproliferative syndromes.
Depending on the particular disorder or condition to be treated, in some embodiments, the E1 enzyme inhibitor of the invention is administered in conjunction with additional therapeutic agent or agents. In some embodiments, the additional therapeutic agent(s) is one that is normally stered to patients with the er or condition being treated. As used , additional therapeutic agents that are normally administered to treat a particular disorder or condition are known as “appropriate for the disorder or ion being treated." {094] The E1 inhibitor of the invention may be administered with the other therapeutic agent in a single dosage form or as a separate dosage form. When administered as a separate dosage -37... 2012/052007 form, the other therapeutic agent may be administered prior to, at the same time as, or ing administration of the E1 inhibitor of the invention.
In some embodiments, the E1 enzyme inhibitor of the invention is stered in conjunction with a therapeutic agent selected from cytotoxic agents, radiotherapy, and immunotherapy riate for treatment of proliferative ers and cancer. Examples of cytotoxic agents suitable for use in combination with the E1 enzyme inhibitors of the invention include: antimetabolites, including, e.g., capecitibine, gemcitabine, 5-fluorouracil or -fluorouracihr leucovorin, fludarabine, cytarabine, mercaptopurine, thioguanine, pentostatin, and methotrexate; topoisomerase inhibitors, including, e.g., etoposide, teniposide, camptothecin, topotecan, irinotecan, doxorubicin, and daunorubicin; vinca alkaloids, including, e.g., vincristine and stin; taxanes, including, e.g., axel and docetaxel; platinum agents, ing, e.g., cisplatin, carboplatin, and oxaliplatin; antibiotics, including, e.g., mycin D, bleomycin, mitomycin C, adriamycin', daunorubicin, idarubicin, doxorubicin and pegylated liposomal doxorubicin; alkylating agents such as melphalan, chlorambucil, busulfan, thiotepa, ifosfamide, carmustine, iomustine, ine, streptozocin, decarbazine, and cyclophosphamide; including, e.g., 3 and CC-4047; n tyrosine kinase tors, including, e.g., imatinib mesylate and gefitinib; some inhibitors, including, e.g., bortezomib; thalidomide and related analogs; antibodies, including, e.g., zumab, rituximab, cetuximab, and bevacizumab; mitoxantrone; dexamethasone; prednisone; and temozolomide.
Other examples of agents the inhibitors of the invention may be combined with include anti-inflammatory agents such as corticosteroids, TNF blockers, “-1 RA, azathioprine, cyclophosphamide, and sulfasalazine; immunomodulatory and immunosuppressive agents such as cyclosporine, tacrolimus, rapamycin, mycophenolate mofetil, interferons‘, corticosteroids, cyclophosphamide, azathioprine, methotrexate, and sulfasalazine; antibacterial and antiviral agents; and agents for Alzheimer's treatment such as donepezil, galantamine, memantine and rivastigmine.
In order that this invention be more fully understood, the following preparative and testing examples are set forth. These examples are for the purpose of illustration only and are not intended to be construed as limiting the scope of the invention in any way.
EXAMPLES Abbreviations AcOH acetic acid ACN acetonitrile DABCO triethylenediamine DCM dichloromethane DCP chloropyrimidine DEA diethylamine DIPEA N,N-diisopropylethylamine DMSO dimethylsulfoxide Et20 diethyl ether EtOAc ethyl acetate EtOH ethanol Et3N triethylamine FA formic acid H20 water h hours IPA isopropyl alcohol lPAc isopropyl acetate LCIMS liquid chromatography mass spectrum LDA lithium diisopropylamide MTBE methyl tert—butyl ether MeOH methanol min minutes MS mass spectrum NMP N-methyl-Z—pyrrolidone rt room ature P3NO 4-phenylpropylpyridine-N-oxide TBS utyldimethylsilyl TFA trifluoroacetic acid THF tetrahydrofuran TLC thin layer chromatography TMS trimethylsilyl -39..
General Methods X—ray Powder Diffraction. XRPD was performed using a Bruker AXS D8 Advance X-ray Diffractometer. Approximately 100 mg sample was gently flattened into a 50 mm er quartz sampling pan for powder measurements. The sample was run as a continuous scan from 2.9 to 29.6 °29 using 29/6 locked coupled angles. Each angle interval was 0.05 °29 and the data were collected for 2 seconds. The sample run occurred under ambient conditions, and all data analysis was performed using EVA version 9.0 software. [0991 Thermal Analysis. The thermal events were analyzed using ential scanning calorimetry (DSC) and thermogravimetric analysis (TGA). TA instruments DSC 0200 and TGA 0500 were used for all sample runs. The thermograms were analyzed using Thermal Advantage for 0 Series software.
Differential Scanning Calorimetry. The sample (12 mg) was sealed in an aluminum pan with lid. The sample was heated at a ramp rate of 10°Clmin from 25° to 400°C, while the nitrogen sample purge was kept nt at 50 mL/min.
Thermogravimetric is. The sampie (5-10 mg) was run in an open platinum pan.
The sample was heated at a ramp rate of 10°Clmin to 400°C, with a nitrogen sample purge of 60 mL/min.
Example 1. Synthesis of (1 R,28)—5-chloromethoxyindanamine (8) Step 1: rel-(1aR,6aS)chloro-6,6a-dihydro-1aH—indeno[1,2-b]oxirene(2).
To a stirring on of ylpropylpyridine-N-oxide (278 mg, 1.31 mmol) in methylene chloride (20 mL) was added (R,R)—Jacobsen catalyst (237.0 mg, 0.3732 mmol) and a solution of sodium hypochlorite (2.0 M in water; 16 mL, 32 mmol) at 0 °C. The resulting brown suspension was stirred at 0 °C for 15 minutes then a on of ro-1H-indene (1) (2.81 g, 18.6 mmol) in methylene chloride (20 mL) was added via syringe with simultaneous addition of additional sodium lorite (2.0M in water; 16 mL, 32 mmol). The reaction was stirred at 0 °C for one hour then the ice bath was removed and the reaction was stirred at room temperature for 1 hr. An aliquot was taken and TLC on silica (hexanes) showed all starting al consumed. The reaction was poured into brine and extracted with methylene chloride.
The combined extracts were washed with saline, then dried over sodium sulfate, filtered, and evaporated under reduced pressure to leave crude product which solidified when placed under hi-vacuum. Yield ~3.7g of a brown solid. 1H NMR (400 MHz, DMSO) 6 7.55 (d, J = 7.6 Hz, 1H), 7.32 (s, 1H), 7.23 (d, J = 7.3 Hz, 1H), 4.36 (s, 1H), 4.13 (s, 1H), 3.03 (dd, J = 45.8, 18.2 Hz, 2H).
Step 2: rel-(1R,28)—1-amino-5—chloroindanol (3).
To a -40 °C mixture of fuming sulfuric acid (4.098 mL, 44.06 mmol) in itrile (30 mL, 500 mmol) was added dropwise a suspension of rel-(1aR,6aS)chloro-6,6a—dihydro-1aH- [1,2—b]oxirene (2) (2.94 g, 17.6 mmol) in acetonitrile (70 mL) and hexane (40 mL). The biphasic mixture was then allowed to warm to room temperature and was stirred for an additional hour, leaving a hazy, rusty red colored mixture. Water (30 mL) was carefully added (all solids dissolved to give a h—brown solution) and the resulting solution was stirred for s. Then additional water (70 mL) was added and the reaction was stirred overnight under an atmosphere of nitrogen at room temperature. Water (50 mL) was added to the reaction, a lation head was attached, the mixture was brought to reflux and distilled until the head temperature reached 100 °C. The distillation head was removed and a reflux condenser was attached and the reaction was heated at reflux for 1 hour to give a clear orange solution with some dark gummy solid around the edges. The reaction was cooled ly then the hot solution was decanted away from the gum into a 500 ml round bottomed flask. The solution was stirred and allowed to cool to room temperature then was made basic (pH 12) via dropwise addition of an aqueous 50% NaOH solution. Methylene chloride was added; the mixture was stirred well, and then was transferred to a separatory funnel. The organic layer was separated and the s layer was repeatedly extracted with additional methylene chloride (until TLC analysis indicated that all product had been ted from the aqueous layer). The organic extracts were combined, washed with saline, dried over sodium sulfate, filtered, and evaporated in vacuo to leave 2.53 g crude product as a light brown powder. LCMS: formic acid, [M + H+ + Na+] = 208; 1H NMR (400 MHz, DMSO) 6 7.31 (d, J = 7.8 Hz, 1H), 7.24 —7.15 (m, 2H), 4.79 (s, 1H), 4.20 (s, 1H), 4.01 (s, 1H), 2.92 (d, J = 15.3 Hz, 1H), 2.73 (d, J = 16.2 Hz, 1H), 2.15 — 1.43 (s, 2H). Chiral HPLC (Chiralpak AD 4.6X250 column eluted with 951510.170 hexanelEtOl-llDEA @ 2.0 mllmin — 45 min run) showed an ee of 80%.
Steps 3 and 4: Chiral resolution of (1 R,2$)—1-amino—5—chloroindan-2—ol (5).
To a flask containing a solution of R,28)—1-amino—5-chloroindanol (3) (2.53 g. 13.8 mmol) in methanol (100 mL) at reflux was added D~(—)—mandelic acid (2.09 g, 13.8 mmol) with stirring. After refluxing for ~15 min the g mantle was removed and the solution was allowed to cool to room temperature with stirring. Solids began precipitating ~15 minutes after the heat source had been removed. The resulting mixture was stirred overnight at rt. The -41.. mixture was then filtered, washed with methanol (10 mL) then diethyl ether (15 mL) and dried in vacuo to provide 2.50 g of the intermediate salt. The filtrate was concentrated to ~1/3 volume and refrigerated overnight, during which time more product precipitated. Again, the mixture was d and washed with methanol (7.5 mL) then diethyl ether (10 mL) and dried in vacuo to provide an additional 0.60 g of the intermediate salt. A total of 3.1g was collected. {0108] The intermediate salt was stirred in a mixture of ethyl acetate (50 ml) and s NaOH (0.2M, 60 ml) until dissolution was complete. The mixture was transferred to a separatory funnel and the organic layer was ted. The aqueous layer was further extracted with ethyl acetate (3X50 ml). The combined c layers were washed with saline until the washings were neutral, then were dried over sodium sulfate, filtered, and evaporated to leave a light tan solid. Further drying under hi-vacuum yielded 1.429 (56% yield) of the title compound as a light tan . Analytical data for title nd: 1H NMR (400 MHz, DMSO) 6 7.31 (d, J = 7.9 Hz, 1H), 7.24 —7.15 (m, 2H), 4.83 (s, 1H), 4.20 (t, J = 3.9 Hz, 1H), 4.00 (d, J = 4.5 Hz, 1H), 2.92 (dd, J = 16.2, 4.9 Hz, 1H), 2.73 (d, J = 15.2 Hz, 1H), 1.85 (s, 2H). Chiral HPLC (Chiralpak AD 4.6X250 column eluted with 95/5/O.1% hexane/EtOH/DEA @ 2.0 mllmin — 45 min run) showed an ee of >99%.
Step 5: 2-[(1R,2$)—5~chlorohydroxy-2,3-dihydro-1H-indenyl]—1H-isoindole—1,3(2H)— dione (6).
In a 1 L round bottom flask, N,N-diisopropylethyiamine (15.2 mL, 0.0871 mol) was added to a suspension of (1S,2R)aminochloroindan-2—ol (16.0 9, 0.0871 mol) and phthalic anhydride (14.2 9, 0.0958 mol) in toluene (473 mL, 4.44 mol), and the reaction mixture was heated at reflux for 18 hours. The reaction was cooled to room temperature, at which point a large amount of solid precipitated. The solid, which was the desired product, was filtered, rinsed with EtOAc and collected. The filtrate was cooled to 0 °C, filtered and the solid was rinsed with EtOAc and combined with the first batch. The filtrate was transferred to a separatory funnel and diluted with H20 (200 mL). The layers were ted, and the aqueous layer was extracted EtOAc (3 x 200 mL). The combined organic layers were washed 1 x brine (100 mL), dried over M9804, filtered, and concentrated in vacuo. The resulting off-white solid was suspended in EtOAc, the large chunks were broken up with sonication, and the suspension was cooled to 0 °C. The solid was filtered and combined with the previous 2 s. The filtrate was concentrated in vacuo, and the resultant white solid was suspended one final time in EtZO (100 mL), filtered and combined with the previous 3 batches. The total yield of all four s of solid was 25.3 g (92%). LCMS: (FA) ES+ molecular ion 314, major ionization 167; 1H NMR (400 MHz, DMSO) 5 7.83 (s, 4H), 7.33 (s, 1H), 7.27 (d, J = 8.2, 1H), 7.19 (dd, J = 2.0, 8.1, 1H), .52 (d, J = 7.4, 1H), 5.34 (d, J = 5.2, 1H), 4.64 (dt, J = 6.9, 12.7, 1H), 3.21 (dd, J = 7.4, 16.1, 1H), 3.02 (dd, J: 6.1,16.1,1H).
Step 6: 2-[(1R,25)—5-chloromethoxy—2,3-dihydro-1H-indenyl]-1H-isoindole- 1,3(2H)-dione (7) To a solution of 2—[(1R,28)chloro—2—hydroxy—2,3-dihydro-1H-indenyl]—1H-isoindole- 1,3(2H)-dione (25.8 9, 0.0822 mol) in tetrahydrofuran (186 mL, 2.29 mol) was added methyl iodide (20.5 mL, 0.329 mol) and the solution was stirred at 0 °C. To this solution was added 1.00 M of potassium tert—butoxide in ydrofuran (90.4 mL, 0.0904 mol) dropwise via an addition funnel over 1 hour. The reaction was ed via addition of 0.1 N HCI (250 mL) and transferred to a separatory funnel containing EtOAc (600 mL). The layers were separated, and the organic layer was washed with 1N NaOH (2 x 100 mL each) and with brine (100 mL). The organic layer was dried over NaZSO4, filtered, and concentrated to afford 2-[(1R,2$)—5—chloro methoxy-2,3-dihydro-1H-indenyl]—1H-isoindole—1,3(2H)—dione (25.8 g, 96%) which. was used without further purification in the next step.
Step 7: (1R,28)—5-chloro—2-methoxyindan-‘i-amine (8) To a suspension of 2-[(1R,28)chloro-2_-methoxy—2,3-dihydro-1H-indenyl]-1H- isoindole—1,3(2H)—dione (7) (25.8 9, 0.0787 mol) in ethanol (260 mL, 4.4 mol) was added hydrazine (4.94 mL, 0.157 mol), and the flask was affixed with a reflux condenser and heated to a bath temperature of 90 °C. A precipitate began to form after several minutes of ng and after 1 hour of g the mixture had become a thick slurrylsolid. The reaction was cooled to room temperature and the solid reaction byproducts were filtered and washed with CHZCIQ (~300 mL). The volatiles were removed from the filtrate in vacuo, and the e was ded in CHZCIZ (250 mL), at which point the solid byproducts were again removed by ion. The volatiles were removed in vacuo, and the residue was again suspended in CH2012 (~50 mL). The solid byproducts were removed a final time by filtration to afford (1 R,28) chloro-Z-methoxyindanamine (15.5 g, 99%) as a red/orange waxy solid. LCMS: (FA) ES+ molecular ion 198, major ionization 181; 1H NMR (400 MHz, DMSO) 5 7.30 (d, J = 7.9, 1H), 7.25 — 7.18 (m, 2H), 4.14 (d, J = 4.9, 1H), 3.89 (td, J = 2.8, 4.9, 1H), 3.29 (s, 3H), 2.89 (ddd, J = 3.8, 16.4, 21.3, 2H), 2.04 (s, 2H). Chiral HPLC (Chiralpak AD 4.6X250 column eluted with 9515101 % hexanelEtOHlDEA @ 1.0 mllmin — 30 min run) showed an ee of >99%. e 2. Synthesis of {(18,28,4R)—4—[(6—{[(1 R,23)—5—chloro-2—methoxy-2,3—dihydro-1 H- indenyl]amino}pyrimidinyl)oxy]—2—hydroxycyclopentyl}methyl sulfamate (l-216) Step 1: reI-(1R,5R)—5-({[tert-butyl(dimethyl)silyl]oxy}methyl)cyclopent—2—en-1—ol (10).
To a on of R,5R)(hydroxymethyl)cyclopent—Z-en—1-ol (47.20 9, 0.4135 mol), methylaminopyridine (2.52 9, 0.0207 mol) and 1H-imidazole (30.97 9, 0.4549 mol) in methylene chloride (800 mL, 10 mol) at 0 °C under an atmosphere of nitrogen was added tert- butyldimethylsilyl chloride (28.0 g, 0.186 mol). The reaction was stirred for at 0 °C for 2.5 h, at which time tert—butyldimethylsilyl chloride (28.0 g, 0.186 mol) was added. The reaction was stirred for 2 additional hours. The reaction was ed by addition of saturated aqueous NaCl solution (200 mL) and water (200 mL). The layers were separated and the organic layer was washed with water (3 x 200 mL) and brine (1 x 200 mL), dried over Na2804, filtered and concentrated in vacuo. The material was used without further purification in the next step.
Step 2: (1S,53)—5-({[tert—butyl(dimethyl)silyl]oxy}methyl)cyclopenten—1-ol (11) To a suspension of rel-(1R,5R)—5-({[tert—butyl(dimethyl)silyl]oxy}methyl)—cyclopent-2—en- 1-ol (crude (10).from us step) and Candida Antarctica on acrylic resin (24.9 9; 10,800 units/g) in methyl tert—butyl ether (1500 mL, 10 mol) was added acetic acid ethenyl ester (190 mL, 2.05 mol) and the reaction was stirred overnight. Solids were removed by filtration and the volatiles were removed in vacuo to provide a clear-colorless oil (143 grams) which was purified by column tography (1 kg silica gel column, eluent 0—30% Et20:hexanes) to afford the desired enantiomer (1S,58)—5—({[tert—butyl(dimethyl)silyl]oxy}methyl)cyclopenteno| (37.5 grams, 79.5%). Chiral HPLC; Chiral Technologies Chiralpak AS RH (4.6X150 mm) 5 micron column, eluent - 55% (0.1% formic acid in 99:1 HZOICchN), 45% (0.1% formic acid in 95:5 CHscNIHZO) indicated an ee of >99%. 1H NMR (400 MHz, CDCI3) 6 5.96 — 5.91 (m, 1H), 5.86 — .80 (m, 1H), 4.87 (dd, J = 2.3, 4.9, 1H), 3.87 (dd, J = 4.7, 10.1, 1H), 3.79 (dd, J = 7.7, 10.1, 1H), 2.50 — 2.40 (m, 1H), 2.35 (ddt, J = 2.0, 8.4, 16.8, 1H), 2.23 — 2.14 (m, 1H), 0.90 (s, 9H), 0.08 (s, 3H), 0.07 (s, 3H). The red enantiomer was isolated as the corresponding acetate in 81.6% yield.
Step 3: tert—butyl[((1S,2$)—2-{[tert—butyl(dimethyl)silyl]oxy}cyclopent—3-en yl)methoxy]dimethylsilane (12) In an oven-dried 2L two-neck flask, cooled under nitrogen, to a solution of (1 S,58)-5— ({[tert-butyl(dimethyl)silyl]oxy}methyl)cyclopent—2—enol (11) (98.07 9, 0.3864 mol) in ene chloride (500 mL, 8 mol) was added 1H—imidazole (31.57 g, 0.4637 mol). To the resulting yellow solution was added a solution of tert-butyldimethylsilyl chloride (58.2 g, 0.386 mol) in methylene chloride (300 mL, 5 mol) via on funnel over ~30 min. The mixture was stirred mechanically for 18 hours. The reaction was quenched via on of water (500mL) and the layers were separated. The organic layer was washed with water mL), dried over M9504, filtered, and concentrated in vacuo to afford tert-butyl[((1S,ZS){[tert- dimethyl)silyl]oxy}cyc|opent—3—en—1—yl)methoxy]dimethylsilane (143.3 g) as a crude residue that was used without further purification.
Step 4: (1 S){[tert-butyl(dimethyl)silyl]oxy}({[tert-butyl(di- methyl)silyl]oxy}methyl)cyclopentanol (1 3) In a 2 L round bottomed flask, tert—butyl[((1S,ZS){[tert- butyl(dimethyl)silyl]oxy}cyclopenten-1Lyl)methoxy]dimethylsilane (12) (12.08 g of the crude residue) was azeotroped with toluene three times, dried under vacuum for 30 minutes, and dissolved in anhydrous tetrahydrofuran (402.7 mL) under an atmosphere of argon. To the solution was added catecholborane in ydrofuran (1.00 M, 88.1 mL, 0.0881 moi) dropwise.
Argon was then bubbled through for 20 minutes to deoxygenate the reaction solution.
Tris(triphenylphosphine)rhodium(l) chloride (3.26 9, 0.00352 mol) was then added. and the reaction was stirred for 18 hours at room temperature under argon. To the reaction was added 1.00 M of sodium hydroxide in water (528.8 mL, 0.5288 moi), followed by careful addition of hydrogen peroxide solution (35 wt% in water, 30.79 mL, 0.3525 mol), and the mixture was d for 4 hours at room temperature. Reaction was quenched via addition of saturated Na28203 (500 mL), the layers were separated, and the aqueous layer was extracted with EtOAc (2 x 300 mL). The combined organic portions were washed with brine, dried over , filtered, and concentrated in vacuo. The brown oil was purified by column chromatography (eluent 0% to 20% ether in hexanes) to afford (1 R,3S,4S){[tert—butyl(dimethyl)silyl]oxy}-4— ({[tert-butyl(di-methyl)silyl]oxy}methyl)cyclopentanol (7.78 g, 2 steps yield = 66%). 1H NMR (400 MHz, CDCla) 5 4.50 (d, J = 4.3, 1H), 4.34 (td, J = 2.7, 4.8, 1H), 3.71 (dd, J = 7.0, 10.0, 1H), 3.53 (dd, J = 7.0, 10.0, 1H), 2.32 — 2.20 (m, 1H), 2.04 (ddd, J = 2.6, 6.7, 13.9, 1H), 1.85 (ddd, J = 7.1, , 1H), 1.73 (dt, J= 4.8, 13.9, 1H), 1.63 (ddd, J = 2.1, 7.9, 13.5, 1H), 1.35 (s, 1H), 0.88 (s, 9H), 0.86 (s, 9H), 0.04 (s, 3H), 0.03 (s, SH).
Step 5: 4-{[(1R,38,4S)—3—{[tert-butyl(dimethyl)silyl]oxy}({[tert- butyl(dimethyl)silyl]oxy}methyl)cyclopentyl]oxy}chloropyrimidine (14) A flame-dried 50 mL round bottom flask with was charged with sodium hydride (0.322 g, 0.008 mol) and tetrahydrofuran (20 mL, 0.3 mol) and the resulting suspension was cooled to 0 2012/052007 °C under an atmosphere of en. To the suspension was added dropwise a solution of (1 R,3S,4S){[tert—butyl(dimethyl)silyl]oxy}-4—({[tert- butyi(dimethyl)silyl]oxy}methyl)cyclopentanol (13) (1.45 g, 0.004 mol) in 0.5 mL THF at 0 “C.
The mixture was stirred at 0 “C for 10 minutes, at which point 4,6-dichloropyrimidine (0.659 g, 0.004 mol) was added, and the mixture was allowed to warm to room temperature and stirred for 18 hours. The reaction was quenched with via addition of ted aqueous NH4CI solution (25 mL) and transferred to a tory funnel. The layers were separated, and the aqueous layer was extracted with tert-BuOMe (3 x 25 mL). The combined organic layers were washed ‘ with brine, dried over anhydrous M9304, filtered, and concentrated in vacuo. The resulting oil was purified by silica gel chromatography (eluent - 0-10% EtOAc in hexanes) to afford 4- {[(1 R,3S,4S){[tert—butyl(dimethyl)si|yl]oxy}({[tert— butyl(dimethyl)silyl]oxy}methyl)cyclopentyl]oxy}-6—chloropyrimidine (1.75 g, 92% yield). LCMS: (FA) ES+ 473; 1H NMR (300 MHz, CDCI3) 6 8.55 (d, J= 0.7, 1H), 6.69 (d, J = 0.8, 1H), 5.61 - .49 (m, 1H), 4.36 (dd, J= 4.6, 6.8, 1H), 3.73 (dd, J = 7.0, 10.0, 1H), 3.57 (dd, J= 6.7, 9.9, 1H), 2.36 — 2.13 (m, 2H), 2.10 — 1.73 (m, 3H), 0.89 (s, 9H), 0.88 (s, 9H), 0.08 - 0.00 (m, 12H).
Step 6:{(1S,28,4R)—2—{[tert-butyl(dimethyl)silyl]oxy}[(6-chloropyrimidin yl)oxy]cyclopentyl}methanol (15) In a 2 L round-bottomed flask, 4-{[(1R,3S,4S)—3—{[tert-butyl(dimethyl)silyl]-oxy}({[tert- butyl(dimethyl)silyl]oxy}methyl)cyclopentyl]oxy}chloropyrimidine (14) (20.5 9, 0.0433 mol was dissolved in ethanol (647.2 mL, 11.08 mol), and cooled to an internal temp of -45 °C. To this was added a precooled (-20 °C) solution of 2% conc. HCI in EtOH (326 mL, 0.0516 mol, prepared by diluting 6.5 mL conc. HCI in 319.5 mL ethanol). The reaction mixture was warmed to -25 °C (to prevent pressure p upon capping the flask), and then capped and placed in a freezer at -35 ”C. The reaction was left to stand at -35 °C for 18 hours. The reaction was quenched with sodium carbonate (13.78 9, 0.1300 mol) (~3 equiv relative to HCI) as a solution in water (40 mL, 2 mol). The volatiles were removed in vacuo, and the reaction mixture was diluted with CHZCI2 (750 mL). The solids were filtered and set aside, and the les were removed from the filtrate in vacuo. The resulting aqueous e with was diluted with EtOAc (500 mL) and water (200 mL) and erred to a separatory funnel. The layers were separated, and the aqueous layer was extracted 2 x 250 mL with EtOAc. The combined organic layers were dried over Na2804, ed, and trated in vacuo. The crude residue was purified by column chromatography (applied to column with ~50 mL CH2Cl2, 400 g column, eluent 0-40% EtOAc:hexanes over 40 min to afford {(1S,23,4R)—2-{[tert-butyl(dimethyl)silyl]oxy}— 4-[(6-chloropyrimidin-4—yl)oxy]cyclopentyl}methanol (11.2 g, 72%). LCMS: (FA) ES+ 359; 1H NMR (400 MHz, CDCla) 5 8.56 (app d, J = 0.6, 1H), 6.70 (app d, J = 0.8, 1H), 5.62 — 5.54 (m, 1H), 4.56 (dd, J = 5.6, 10.9, 1H), 3.86 — 3.78 (m, 1H), 3.70 (ddd, J = 6.0, 7.6, 11.3, 1H), 2.48 (dd, J = 4.6, 7.6, 1H), 2.42 — 2.31 (m, 1H), 2.23 (ddd, J = 6.3, 9.8, 14.2, 1H), 2.15 — 2.09 (m, 2H), 1.89 (ddd, J= 1.9, 8.0, 14.3, 1H), 0.91 (s, 9H), 0.12 (s, 3H), 0.11 (s, 3H).
Step 7: {(18,26,4R)—2-{[tert-butyl(dimethyl)silyl]oxy}[(6-{[(1R,28)—5-chloro—2-methoxy- 2,3—dihydro—1H-indenyl]amino}pyrimidin-4—yl)oxy]cyclopentyl}methanol (16) To a solution of {(1S,28,4R)—2—{[tert—butyl(dimethyl)silyl]oxy}[(6-chloropyrimidin yl)oxy]cyclopentyl}methanol (15) (11.2 9, 0.0312 mol) and N,5-dichloro-2—methoxy-2,3-dihydro- 1H-indenamine (9.00 9, 0.0384 mol) in 1-butanol (99.2 mL, 1.09 mol), in a 350 mL sealable reaction vessel, was added ylamine (21.7 mL, 0.156 mol). The vessel was sealed and then heated with stirring to 148 ”C in an oil bath for 72 hours. The vessel was cooled to room temperature and the volatiles were removed in vacuo and EtZO (200 mL) was added to the resulting residue. The solids were homogenized by tion, filtered, and rinsed with Et20 (50 mL). To the filtrate was added Celite® (100 mL) and the volatiles were d in vacuo. The product adsorbed onto Celite® was added to a dry load cartridge and purified via column chromatography (400 9 column, eluent 0-80% EtOAczhexanes over 80 min) to afford {(1 S,28,4R)—2—{[tert-butyl (dimethyl)silyl]oxy}[(6-{[(1 R,26)ch|oro-2—methoxy—2,3-dihydro-1 H- indenyl]amino}pyrimidin-4—yl)oxy]cyclopentyl}methanol (11.5 g, 71%). LCMS: (FA) ES+ 520; 1H NMR (400 MHz, CDCla) 5 8.31 (s, 1H), 7.24 — 7.13 (m, 3H), 5.75 (s, 1H), 5.56 (s, 1H), 5.45 (dt, J = 2.9, 5.8, 2H), 4.57 (dd, J = 5.9, 11.2, 1H), 4.19 (td, J = 1.3, 4.7, 1H), 3.84 — 3.77 (m, 1H), 3.75 — 3.65 (m, 1H), 3.37 (s, 3H), 3.10 (d, J: 16.6, 1H), 2.97 (dd, J: 45167, 1H), 2.58 (dd, J = 4.8, 7.4, 1H), 2.43 —2.32 (m, 1H), .06 (m, 3H), 1.90 (dd, J= 8.0, 14.2, 1H), 0.91 (s, 9H), 0.11 (s, 3H), 0.10 (s, SH).
Step 8: {(1S,ZS,4R)[(6-{[(1 R,2S)—5-chloro—2-methoxy-2,3-dihydro-1H-inden yl]amino}pyrimidi'nyl)oxy]hydroxycyclopentyl}methyl ate (I-216) To a solution of {(1S,28,4R)—2—{[tert—butyl(dimethyl)silyl]oxy}[(6-{[(1R,23)—5—chloro-2— methoxy—2,3-dihydro-1H-indenyl]amino}pyrimidinyl)oxy]cyclopentyl}methanol (16) (11.5 9, 0.0221 mol) in N,N-dimethylacetamide (160 mL, 1.7 mol) was added chlorosulfonamide (6.64 9, 0.0575 mol), and the reaction stirred at room temperature for 1 hour. The reaction mixture was then cooled to 0 °C. at which point 12 M hydrochloric acid (90 mL, 1.1 mol) was added drapwise via an addition funnel over 25 min, keeping the internal reaction temp below 50 °C. Once the addition was complete, the cooling bath was removed and the on was allowed to warm to room temperature with stirring for 2 hours. The reaction was next quenched carefully via slow addition of a suspension of sodium carbonate (70.30 g, 0.6633 mol) in water (200.0 mL, 11.10 mol). The resulting suspension was filtered and the solids were rinsed with EtOAc (3 rinses, total - 800 mL). The solids were set aside, and the e was transferred to a separatory funnel and the layers were separated. The aqueous layer was extracted 3 x EtOAc (total EtOAc - 2000 mL), and the combined organic layers were dried over NaZSO4, filtered, and concentrated in vacuo. The crude residue was purified via column chromatography ed with CHZCIZ, 400 9 column, eluent 0-1 0% MeOH:CH2C|2 over 80 min then 10% MeOH: CHZCIZ for 20 min) to afford {(1S,ZS,4R)[(6-{[(1R,2S)chloro—2—methoxy—2,3-dihydro-1H-inden yl]amino}pyrimidinyl)oxy]—2—hydroxycyclopentyl}methyl sulfamate (10.3 g, 96%). LCMS: (FA) ES'+ 485; 1H NMR (400 MHz, MeOD) 6 8.16 (s, 1H), 7.25 (s, 1H), 7.22 —— 7.13 (m, 2H), 5.98 (s, 1H), 5.52 (d, J = 32.8, 1H), 5.34 (s, 1H), 4.43 — 4.35 (m, 1H), 4.32 (dd, J = 7.5, 9.8, 1H), 4.22 (td, J = 2.5, 5.0, 1H), 4.16 (dd, J: 7.3, 9.8, 1H), 3.34 (s, 4H), 3.10 (dd, J = 2.1, 16.6, 1H), 3.02 (dd, J = 4.8, 16.6, 1H), 2.58 — 2.46 (m, 1H), 2.28 (ddd, J = 2.2, 8.9, 14.8, 1H), 2.12 — 1.90 (m, 4H).
Step 9: {(1S,28,4R)—4-[(6-{[(1R,28)—5-chIoro-Z-methoxy-Z,3-dihydro-1H-inden yl]amino}pyrimidinyl)oxy]hydroxycyclopentyl}methy| sulfamate HCI salt (I-216 HCI Form I) {(1S,ZS,4R)[(6-{[(1R,25)—5-chloromethoxy—2,3-dihydro—1 H-inden yl]amino}pyrimidinyl)oxy]—2-hydroxycyclopentyl}methyl sulfamate (l-216) (24.1 9, 0.0497 mol) was placed in a 500—ml rbf equipped with a stirbar. Acetonitrile (500 mL) was added with stirring. The mixture was sonicated for one minute and then was stirred at room temperature under an atmosphere of nitrogen for 1 hour to ensure that the solid was fully sed.
Aqueous hloric acid (6.0M, 9.15 mL, 0.0549 mol) was added in a slow stream - the solution became looser but total solution did not occur. The mixture was seeded with a few crystals of usly prepared l-216 HCI salt (prepared as described in Example 3 below) and the mixture was sonicated for 1 minute then was stirred at room temperature under an atmosphere of nitrogen for 2 hours; the mixture became quite thick during this time as white solid precipitated from solution. The stirred mixture was diluted with diethyl ether (500 mL) and then stored in a erator overnight. The precipitate was ted on a fritted glass funnel, washed with ether, then dried in vacuo overnight at 40 °C to leave the title compound as a fluffy white crystalline powder, 24.37 g (94% yield). 1H NMR (400 MHz, DMSO) 6 8.44 (s, 1 H), 8.38 (s, 2 H), 7.43 (s, 2H), 7.36 (s, 1H), 7.23 (dd, J = 20.1, 8.1 Hz, 3H), 6.22 (s, 1H), 5.68 (s, 1H), .26 (s, 1H), 4.31 — 4.12 (m, 4H), 4.09 — 3.92 (m, 1H), 3.05 (s, 3H), 2.36 (dt, J = 18.8, 7.6 Hz, 1H), 2.21 (dd, J = 14.0, 6.5 Hz, 1H), 2.05 — 1.93 (m, 2H), 1.89 (dd, J = 13.3, 8.3 Hz, 1H).
LCMS: formic acid, [M + H+] = 485.3. Chiral HPLC (Chiralcel OJ 4.6X250 column eluted with 0.1% hexanelEtOHlDEA @ 0.75 mlfmin — 80 min run) indicated product was 99.7% ee.
HPLC analysis indicated that the product was 99.2% pure. XRPD data for l-216 HCI Form I produced in this Example 2 is shown in FIGURE 7. Peaks identified in FIGURE 7 include those listed in Table 5.
Table 5 Angle Intensity 2-Theta ° % .31.— 17.484 38.5 18.13 29 18.255 23.3 18.519 42.6 19.439 37.9 19.729 53.8 .296 37.9 21.581 77.5 22.065 22.391 485 22.662 22.993 66.3 23.323 37.5 23.796 24.289 81.7 .086 63.3 .927 43.8 26.678 52.7 080 data for l-216 HCI Form I produced in this Example 2 is shown in FIGURE 8, and TGA data for l-216 HCI Form I ed in this Example 2 is shown in FIGURE 9.
Example 3. Synthesis of {(1S,2$,4R)—4—[(6-{[(1R,28)—5-chloro-2—methoxy—2,3-dihydro-1 n- 1-y|]amino}pyrimidin-4—yl)oxy]hydroxycyclopentyl}methyl sulfamate hydrochloride salt (l-216 HCI). {(1S,2S,4R)—4—[(6-{[(1 R,28)chloromethoxy—2,3-dihydro—1 H-inden—1 - no}pyrimidinyl)oxy]hydroxycyclopentyl}methyl sulfamate [-216 (4.44 9, 0.00916 mol) was placed in a 250—ml round bottomed flask equipped with a stir bar. Acetonitrile (82.5 mL) was added with stirring. The mixture was stirred and sonicated for several minutes (the solids did not fully dissolve). The flask was immersed in an ice bath and then, with stirring, aqueous hydrochloric acid (6.0M, 1.69 mL, 0.0101 mol) was added in a slow stream during which time the solids lly dissolved. The ice bath was removed and the reaction mixture was stirred at room temperature under an atmosphere of nitrogen for 2 hours during which time a dense white precipitate formed. l ether (82.5 mL) was added with stirring and the resulting mixture was stored in a refrigerator overnight. The precipitated product was collected on a fritted funnel, washed with cold ether, then dried for 24 hours at 42° C under high vacuum to afford the title compound as a fluffy white powder, 3.84 g (80% yield). LCMS: formic acid, [M + H+] = 485.2. 1H NMR (400 MHz, MeOD) 6 8.42 (s, 1H), 7.30 (s, 1H), 7.27 — 7.18 (m, 2H), 6.26 (s, 1H), 5.78 (s, 1H), 5.30 (s, 1H), 4.46 —4.38 (td, J = 5.2, 2.0 Hz, 1H), 4.39 — 4.25 (m, 2H), 4.23 — 4.13 (dd, J = 9.9, 7.4 Hz, 1H), 3.37 (s, 3H), 3.18 — 3.04 (m, 2H), 2.62 — 2.47 (m, 1H), 2.42 — 2.31 (ddd, J = .0, 6.9, 2.0 Hz, 1H), 2.24 — 2.14 (dt, J = 15.0, 4.6 Hz, 1H), 2.14 — 2.02 (dd, J = 10.3, 5.9 Hz, 2H).
Example 4. Synthesis of (1 R,ZS)chloromethoxy-2,3-dihydro-1H-indenamine hydrochloride (20) Step 1: 5-chloro—2-methoxy-2,3-dihydro-1H-indenone (18) A 22 L multi-neck reactor equipped with a temperature probe, a nitrogen inlet, a cooling bath and an overhead mechanical r was charged with methanol (2400 mL) and cooled to — ”C. Sulfuric acid (384 mL, 7.22 mol) was charged via an addition funnel over 1 hour. The temperature was maintained at about -25 c‘C and peaked at —18 °C for ~5 minutes. Trimethyl orthoformate (906 mL, 8.3 mol) was added over 10 minutes followed by 5-chloro-2,3-dihydro- 1H-indenone (17) 0 9, 3.61 mol) as a solid. The internal temperature slightly increased by 2 ”C. s reagent (15539, 3.97 mol) was dissolved in methanol (2400 mL) over 20 minutes which was added to the reaction vessel over 1 hour and 15 minutes. The addition was exothermic and the internal temperature was maintained at about —20 °C. Upon completion of addition, the dark red solution was stirred at —20 “C for 1 hour, at which point HPLC analysis indicated te conversion to the desired product. Water (7200 mL) was added in small portions. After the on of a small amount of water (~50 mL), the product suddenly precipitated. The agitation became slow and difficult. The mixture was stirred at 0~10 °C for 1 hour and was ed through a 3000 mL coarse fritted funnel. The filtration was te in 2 hours and the cake was rinsed with water (7200 mL) until the pH of the filtrate reached about 5.
The wet cake was added back to the reactor and heptane (3000 mL) was added. The e was stirred at -20 “C for 1 h and filtered. The cake was rinsed with heptanes (1200 mL) and conditioned for 30 minutes. The wet cake was dried under high vacuum for 3 days to completely remove heptane and reduce the water content to <2%. The al had purities of 99% (AUG by HPLC) and 93 wt% by wt% assay (622.88 9, 88%). 1H NMR (300 MHz, CDCIS, 5): 7.69 (m, 1H), 7.43 (s, 1H), 7.38 (m, 1H), 4.18 (m, 1H), 3.63 (s, 3H), 3.47 (m, 1H) and 2.99 (m, 1H).
Step 2: (R,E)—N-((S)—5—ch|oro—2—methoxy-2,3-dihydro-1H—indenylidene)—2- methylpropane-Z-sulfinamide (19) A 22 L multi-neck reactor equipped with a condenser, a nitrogen inlet, a heating mantle and an overhead mechanical stirrer was charged with 5-chloro-2—methoxy—2,3—dihydro—1H- inden—1-one (18) (622.88 9, 3.17 mo!) and (R)—tert-butyisulfinamide (460.7 g, 3.8 mol).
Tetrahydrofuran (3100 mL) was added to the mixture and the temperature dropped to 9 °C. )4 (985 mL, 4.76 mol) was added over 10 minutes. The mixture was heated to 68 °C and all solids dissolved at about 35 “C. After 5 hours, the reaction achieved a 50% yield as determined by HPLC wt% assay. The reaction was stirred at 68 °C for an additional 5 hours until the undesired diastereomer decomposed to less than 5% (AUG). The reaction was cooled to ambient temperature over 2 hours and stirred for 16 hours. HPLC analysis indicated no obvious change in reaction profile during this . This crude reaction mixture was taken in to the next step without r purification.
Step 3 and 4: (1R,28)—5—chloromethoxy-2,3-dihydro—1H-indenamine hydrochloride (20) A 22 L multi-neck reactor ed with a nitrogen inlet, a cooling bath and an overhead mechanical stirrer was charged with crude (R,E)-N-((S)—5—chloromethoxy—2,3—dihydro-1 H- indenylidene)—2—methylpropane-Z-sulfinamide (21) [approximately 475 9, imately 1.58 mol] in tetrahydrofuran (4000 mL). Methanol (9300 mL) was added in small portions. No obvious temperature change was observed. The mixture was cooled to —24 CC using an acetone/dry ice bath. A 2 L, three-neck round bottom flask was charged with triglyme (528 mL) and cooled to 9 °C. NaBH4 (60.2 g, 1.58 mol) was added in small portions. The temperature slightly increased by 1°C. The mixture was warmed to ambient temperature and stirred for 2 hours until all solids dissolved to afford a slightly cloudy solution. The NaBH4 solution was charged to the 22 L reactor over 50 minutes at —24 °C. The exotherm was controlled by the addition rate. No obvious off-gassing was observed. Upon completion of addition, the mixture was stirred at —24 °C for an additional 2 hours, at which point HPLC analysis indicated a complete reaction and a 92% dr. The mixture was warmed up to ambient temperature over 3 hours and stirred for 16 hours. The reaction was cooled again to ~7 “C and water (950 mL) was added in portions resulting in a 5 “C se of the internal ature. Celite (475 g) was added and the mixture was stirred for 1 hour. The mixture was then filtered through a large bench-top filter (i.d.: 19 in) and the filter cake was rinsed with methanol (4000 mL). HPLC is of the last portion of filtrate indicated no significant amount of product. The ed filtrates were trated under reduced pressure to a volume of ~6 L. lsopropyl acetate (950 mL) was added and the layers were allowed to te. The s layer was extracted with lsopropyl acetate (900 mL) and the combined organic layer was washed with saturated brine (2000 mL). The solution was then dried over sodium sulfate and trated to about 2 L. The mixture was then azeotropically distilled with tetrahydrofuran (3000 mL x 2). Karl-Fisher analysis indicated a water content of ~0.2%.
A 22 L neck reactor equipped with a nitrogen inlet, a g bath and an overhead mechanical stirrer was charged with crude sulfonyl intermediate (approximately 475 g , approximately 1.58 mol) and 2—methyl-tetrahydrofuran (9500 mL). The solution was cooled to — °C and 4M hydrochloric acid in e (800 mL, 3.16 mol) was added over 40 minutes. An exotherm was not obvious. Product precipitated out toward the end of the addition. The mixture was stirred at —20 °C for an additional 1 hour, at which point HPLC analysis indicated te conversion. The mixture was filtered through a large BUchner funnel (i.d.: 11 in). The tion took over 2 hours. The filter cake was rinsed with e (1000 mL) and ioned for 1 hour.
The solid was then transferred back to the reactor and acetone (3500 mL) was added. The mixture was stirred at ambient temperature for 16 hours and then filtered. The filter cake was rinsed with acetone (500 mL) and then dried under vacuum for 16 hours. Approximately 293 g of product was afforded as an off-white solid. HPLC analysis indicated 96% purity and 96% ee.
A 22 L, multi-neck reactor equipped with a condenser, a nitrogen inlet, a heating mantle and an overhead mechanical stirrer was charged with (1 R,2$)—5—chloro-2—methoxy—2,3-dihydro—1 H- indenamine hydrochloride (20) (290 g, 1.24 mol) and ethanol (5200 mL). The mixture was stirred for 1 hour and a slightly cloudy solution was afforded. The mixture was filtered through a fine fritted funnel and the clear filtrate was charged back to the reactor. The solution was heated to 55 °C and stirred for 30 minutes. 2-rnethoxymethylpropane (5200 mL) was added over 1.5 hours and the temperature was maintained at 55 °C during the addition. Solid precipitated toward the end of the addition. The resulting white suspension was stirred at 55 °C for 1 hour and slowly cooled to ambient temperature over 2 hours. The mixture was stirred at ambient temperature for 2 days and then d through a large BUchner funnel (id: 11 in). The filter cake was rinsed with MTBE (1000 mL) and dried under vacuum for 16 hours. The product was afforded as a white solid (184.4 g, 50%, >99% AUC, >99% ee). 1H NMR (300 MHz, CD30D, 6): 7.50 (m, 1H), 7.37 (m, 2H), 4.78 (m, 1H), 4.40 (m, 1H), 3.51 (s, 3H) and 3.19 (m, 1H).
Example 5. Synthesis of ((18,28.4R)—4—(6-((1R,28)—5—chloromethoxy—2,3—dihydro-1 n- ino)pyrimidinyloxy)hydroxycyclopentyl)methyl sulfamate hloride Form | (l-216 HCI Form I) Step 1: ((1R,4S)(benzyloxy)(benzyioxymethyi)cyclopent-2—enyloxy)trimethylsilane (22) To a solution of dipropylamine (212 mL, 1.55 mol) in 2-methoxymethylpropane (2000 mL) at —15 °C under a blanket of nitrogen, 2.50 M of n-butyllithium in hexane (567 mL, 1.42 mol) was added slowly over 10 minutes, maintaining a temperature of less than -10°C. The resulting white suspension was stirred for 30 s at -15 °C. To this suspension was added (1S,2R,SS,5R)-3—(benzyloxy)—2-(benzyloxymethyl)—6—oxabicyclo[3.1.0]hexane (21) 0 9, 1.29 mol) slowly as a solution in methyl tert-butyl ether (1200 mL) over 30 minutes, maintaining an internal temperature of less than -10 °C. The reaction mixture was stirred for 30 minutes at - °C. TLC analysis indicated no remaining ng material (20% ethyl acetate I heptane).
Chlorotrimethylsilane (204 mL, 1.61 mol) was added while maintaining a temperature of less than -10 °C. The e was allowed to warm to 0 “C and stirred for 30 minutes. TLC analysis indicated that no alcohol intermediate (20% ethyl acetate I heptane). The on mixture was quenched with the slow addition of water (4 L) while maintaining an internal temperature of less than 8 °C. The aqueous layer was separated and the organic layer was extracted 3 times with water (3 x 4 L) and once with saturated sodium chloride in water (4 L). The organic layer was concentrated under reduced pressure to give an orange oil (480 g, 97.4%) which was used without further purification. 1H NMR (300 MHz, CD30D, 6): 7.18 (m, 10H), 5.65 (s, 1H), 4.55 (t, 1H), 4.30 (m, 5H), 4.02 (s, 2H), 2.58 (m, 1H), 1.47 (m, 1H) and 0.00 (s, 9H). {0144] Step 2: (1$.38.4S)(benzyioxy)—4—(benzyloxymethyl)cyclopentanol (23) To a solution of ((1 R,4S)-4—(benzyloxy)—3—(benzyloxymethyi)cyclopent—Z— enyloxy)trimethylsilane (22) (478.00 9, 1.2494 mol) in tetrahydrofuran (9.6 L), Pd 5 wt% on barium sulfate (265.9 9, 0.1249 mol) was added and the mixture was stirred under 100 psi of hydrogen at ambient temperature for 18 hours, stirring at 200 rpm.
HPLC analysis after 18 hours indicated consumption of starting material. The reaction mixture was filtered through a medium frit funnel and the bed was washed with tetrahydrofuran (2000 mL). The filtrate was concentrated, yielding a yellow oil. The resulting oil was taken up in ethyl acetate (2000 mL) to which 2.0 M of hydrochloric acid in water (2000 mL) was added, and the biphasic e was stirred for 1 hour. The organic layer was separated and extracted once with ted sodium bicarbonate in water (2000 mL), twice with 2.0 M of sodium hydroxide in water (2000 mL) and finally with saturated sodium chloride in water (2000 mL). The organic layer was trated to give a brown oil (344 g, 88%) which was used without further purification. 1H NMR (300 MHz,ICD30D, 6): 7.18(m, 10H), 4.38 (m, 4H), 4.12 (m, 1H), 3.85 (t, 1H), 3.68 (m, 1H), 3.44 (m, 1H). 2.00 (m, 3H), 1.75 (m, 1H) and 1.42 (m, 1H).
Step 3: ,4S)—3—(benzyloxy)-4—(benzyloxymethyl)cyclopentanol (24) To a solution of (1S,38,4S)(benzyloxy)(benzyloxymethyl)cyclopentanol (23) (340.00 9, 1088.3 mmol) in methylene chloride (3400 mL) and triethylamine (455.08 mL, 3265.0 mmol) at 0 °C, was added methanesulfonyl chloride 1 mL, 1197.2 mmol) slowly under a blanket of nitrogen. ining a temperature of less than 10 “C. The reaction was allowed to warm to ambient temperature and stirred for 1 hour. HPLC indicated complete consumption of starting material. The reaction mixture was cooled to 0 °C and quenched with water (1700 mL) ining a temperature of less than 10 °C. The organics were separated and extracted twice with water (1700 mL) and twice with saturated sodium bicarbonate in water (1700 mL). Sodium sulfate (50 g) was added and the mixture d for 10 minutes. The slurry was filtered and the filtrate trated to give a brown oil. The oil was taken up in tetrahydrofuran (3400 m) to which tetrabutylammonium acetate (656.28 9, 2176.7 mmol) was added and the mixture was stirred at ambient temperature for 20 hours. HPLC analysis indicated complete consumption of starting material. The reaction mixture was concentrated to ~ 2 volumes (700 mL), and ethyl e (3400 mL) was added and mixture was extracted three times with water (1700 mL) and once with saturated sodium chloride in water (1700 mL). The organics were concentrated and the ing residue was eluted through a plug of silica gel (1 kg) with 0-20% ethyl acetate:l hexane [ethyl e (4 L) + hexane (16 L)]. The desired fractions were combined and concentrated to give a brown residue. To the resulting e, methanol (4000 mL) was added followed by a mixture of sodium ide 9 9, 3265.0 mmol) in water (2000 mL), and the reaction mixture was stirred at ambient temperature for 1 hour. HPLC analysis indicated complete consumption of starting material. The majority of the methanol in the on mixture was concentrated and water (1700 mL) was added. The mixture was ted three times with ethyl acetate (3 x 1700 mL). The combined organics were washed with saturated sodium chloride in water (1700 mL) and dried over sodium sulfate (50 g). The resulting slurry was filtered and concentrated to give a light brown oil (238 g 1H NMR (300 MHz, CDSOD, 5): , 70%). 7.28 (m, 10H), 4.50 (m, 3H), 4.38 (m, 2H), 4.12 (t, 1H), 3.70 (m, 1H), 3.45 (m, 1H), 2.52 (m, 1H), 2.11 (m, 1H) and 1.75 (m, 3H).
Step 4: 4—((1R,3S,4S)—3—(benzyloxy)(benzyloxymethyl)cyclopentyloxy)—6- chloropyrimidine (25) [0149} At 0°C. under a blanket of en, to a solution of (1R,3S,4S)-3—(benzyloxy)-4— (benzyloxymethyl)cyclopentanol (24) (226.500 9, 725.026 mmol) in tetrahydrofuran (1150 mL) was added NaH, 60% in mineral oil (86.995 9, 2175.1 mmol) portionwise, maintaining a temperature of less than 10 “C. A solution of 4,6-dichloropyrimidine (118.81 9, 797.53 mmol) in tetrahydrofuran (1150 mL) was then added over 30 minutes maintaining a temperature of less than 5 °C. The mixture was allowed to warm to ambient temperature and stirred for 24 hours.
HPLC analysis indicated that the reaction mixture contained 74% starting material. The reaction e was quenched with a mixture of water (1150 mL) and ted ammonium chloride in water (1150ml), maintaining a temperature of less than 10 °C. The tetrahydrofuran layer was separated and trated to ~ 2 volumes (500 mL). The aqueous layer was extracted twice with ethyl acetate (1150 mL). The organic layers were combined and washed twice with water (1150 mL) and once with ted sodium chloride in water (1150 mL). The organics were then concentrated. The residue was taken up in tetrahydrofuran (2300 mL) and cooled to 0 °C under a blanket of en. NaH, 60% in mineral oil (86.995 9, 2175.1 mmol) was added portionwise maintaining a temperature of less than 10 ”C. Mixture was allowed to warm to ambient temperature and stirred for 16 hours. HPLC analysis indicated reaction was complete. The on mixture was quenched with a mixture of water (1150 mL) and saturated ammonium chloride in water (1150 mL). The tetrahydrofuran layer was separated and concentrated to ~ 2 volumes (500 mL). The aqueous layer was extracted twice with ethyl acetate (1150 mL). The organic layers were combined and washed twice with water (1150 mL) and once with saturated sodium chloride in water (1150 ml). The organics were then concentrated to give the crude intermediate 4-((1 R,38,4S)—3—(benzyloxy)(benzyloxymethyl)cyclopentyloxy) chloropyrimidine. This crude reaction mixture was taken in to the next step without further purification.
Step 5: (18,28,4R)(6-chloropyrimidin—4—yloxy)—2—(hydroxymethyl)cyclopentanol (26) The crude intermediate 4-((1R.3S',4S)—3—(benzyloxy)—4— (benzyloxymethyl)cyclopentyloxy)chloropyrimidine (25) was taken up in methylene de (3000 mL) and the e was cooled to 0 °C. 1.0 M of Trichloro-borane in methylene de (1087.538 mL, 1087.538 mmol) was added slowly maintaining < 10°C. The resulting mixture was allowed to stir for 1 hour at 0°C. HPLC analysis indicated consumption of starting material.
The reaction mixture was added slowly to saturated sodium bicarbonate in water (2300 mL) and the biphasic mixture was allowed to stir for 20 minutes. The methylene chloride layer was separated and the aqueous extracted twice with methylene chloride (2300 mL). The organics were combined and concentrated. The residue was purified by eluting through a silica gel (1 kg) plug with 50 to 100% ethyl acetate I hexane (hexane (6 L) + ethyl acetate (14 L). The desired fractions were combined and concentrated to give a red solid (124 g, 70%). 1H NMR (300 MHz, CD3OD, 5): 8.58 (s, 1H), 6.91 (s, 1H), 5.61 (m, 1H), 4.39 (t, 1H), 3.75 (m, 1H), 3.61 (m, 1H), 2.25 (m, 3H) and 2.00 (m, 2H) Step6: (1S,2S,4R)(6-((1R,28)—5—chloro—2-methoxy—2,3—dihydro-1H-inden-1— ylamino)pyrimidinyloxy)—2—(hydroxymethyl)cyclopentanol (27) To a 500ml Parr pressure vessel was added (1S,28,4R)—4—(6-chloropyrimidin-4—yloxy)—2— (hydroxymethyl)cyclopentanol (26) (25.00 9, 102.2 mmol) in N-methylpyrrolidinone (200 mL).
To this mixture was added (1R,28)—5—chloro-2—methoxy—2,3-dihydro—1H-inden—1-amine hydrochloride (31.10 9, 132.8 mmol) followed by N,N-diisopropylethylamine (88.99 mL, 510.9 mmol). The vessel was then sealed, pressurised with 30 psi of nitrogen and heated to 130 °C for 22 hours. The pressure sed to 50 psi when the reaction reached ature and held during the course of the reaction. After 22 hours the reaction was cooled to ambient temperature and the pressure was vented. Methylene chloride (250 mL) was added to the reaction mixture and this was then extracted with saturated sodium bicarbonate in water (250 mL). The organic layer was then extracted four times with water (250 mL) and once with ted sodium chloride in water (250 mL). The organic layer was then dried over sodium sulfate (7.5 g), d and trated. To the black semisolid oil was added acetonitrile (250 mL) and the mixture was stirred for 2 hours at ambient temperature. During this time a beige solid itated and was filtered and dried under reduced pressure at 40 “C for 16 hours. A WO 28832 light biege solid was afforded (17 g 1H NMR (300 MHz, CD3OD, 6): 8.19 (s, , 41%). 1H), 7.25 (s, 1H), 7.18 (m, 2H), 5.97 (s, 1H), 5.58 (m, 1H), 5.30 (m, 1H), 4.41 (m, 1H), 4.22 (m, 1H), 3.76 (m, 1H), 3.61 (m, 1H), 3.30 (s, 3H), 3.05 (m, 2H), 2.30 (m, 2H) and 1.97 (m, SH).
Step 7: ((1S,ZS,4R)(6-((1 R,23)—5—chloro—2—methoxy—2,3-dihyd ro-1 H-inden ylamino)pyrimidinyloxy)hydroxycyclopentyl)methy| sulfamate (l-216) (1S,28,4R)—4—(6-((1R,28)—5-Chloro—2—methoxy—2,3—dihydro-1H-inden—1- ylamino)pyrimidin-4wyloxy)—2-(hydroxymethyl)cyclopentanol (27) (85.00 9, 209.4 mmol) was dissolved in N-methylpyrrolidinone (510 mL) in a 3L reactor. To this solution was added (4—aza- 1~azoniabicyclo[2.2.2]octylsuIfonyl)(tert-butoxycarbonyl)azanide~1 ,4- diazabicyclo[2.2.2]octane (1:1) hydrochloride (prepared as bed in Example 6) (368 g, 838 mmol) in one portion followed by the slow addition of acetonitrile (255 mL). The resultant thick slurry was stirred at ambient temperature for 3 hours. Upon reaction completion, water (595 mL) was added slowly at ambient temperature. To the resulting e, ethyl acetate (1.70 L) was added. The c layer was separated and washed twice with water (2 x 595 mL) and once with saturated sodium chloride in water (595 mL). The combined aqueous layers were extracted three times with ethyl acetate (850 mL). The combined organic layers were dried over sodium sulfate (20 g), filtered and concentrated. The residue was taken up in acetonitrile (680 mL) and the resulting solution cooled to a ature of less than 5 °C. 12.0 M Hydrochloric acid in water (255 mL, 3060 mmol) was added slowly maintaining an internal temperature of less than 10 °C and the ing e was stirred at ambient temperature for 13 hours.
HPLC indicated no Boc protected intermediate remaining. The reaction mixture was added slowly to a mixture of saturated sodium carbonate in water (850 mL) and water (850 mL) maintaining < 20 °C. Ethyl acetate (850 mL) was then added. The organic layer was separated and ted twice with water (850 mL) and once with saturated sodium chloride in water (850 mL). The aqueous layers were combined and extracted twice with ethyl acetate (850 mL). The organics were combined and dried over sodium sulfate (20 g), filtered and concentrated. The resulting residue was dissolved in methylene de (170 mL) and eluted through a plug of silica (1 Kg) with 4 L of methylene chloride, 4 L of methylene chloridelethyl acetate (1:1) and finally 8 L ethyl acetate. The desired fractions were combined and trated to give a yellow semi-solid (71 9), containing residual NMP. 1H NMR (300 MHz, CD3OD, 6): 8.19 (s, 1H), 7.25 (s, 1H), 7.18 (m, 2H), 5.97 (s, 1H), 5.58 (m, 1H), 5.35 (m, 1H), 4.35 (m, 2H), 4.15 (m, 2H), 3.30 (s, 3H), 3.05 (m, 2H), 2.51 (m, 1H), 2.30 (m, 2H) and 2.00 (m, 2H).
WO 28832 Step 8: Preparation of ((1S,2$,4R)—4—(6-((1R,2S)chloro-2—methoxy-2,3-dihydro—1 H- indenylamino)pyrimidinyloxy)—2-hydroxycyclopentyl)methyl sulfamate hydrochloride Form I (l-216 HCI Form I) In a 3—neck, 3L reactor, the crude I-216 from step 7 (142.00 9, 292.81 mmol was slurried in isopropyl alcohol (710 mL) and the mixture was heated to 60 “C for 20 minutes. 6.0 M hydrochloric acid in water (97.604 mL, 585.62 mmol) was then added very slowly and mixture stirred at 60 “C for 10 minutes. Complete dissolution was observed after 10 ml of the 6M HCI was added, with an exotherm of 7 °C. The reaction mixture was cooled to 50 °C and seeded with previously prepared l-216 HCI Form I (prepared as described in Example 7 below) (100 mg). Solids began to slowly precipitate and this slurry was allowed to stir at 50°C for ,60 s. Opyl acetate (1420 mL) was added slowly over 1 hour maintaining > 45 °C. The e was allowed to cool to ambient temperature and stirred for 2 hours, cooled to < 5 °C and stirred for 2 hours. The solids were ed and the bed was gravity washed with acetic acid, 1-methylethyl ester (710 mL). Solids were dried under reduced pressure at 45°C for 16 hours, yielding white solids (113.5 g, 51% over 2 steps). 1H NMR (300 MHz, CD300, 6): 8.48 (s, 1H), 7.33 (s, 1H), 7.22 (m, 2H), 6.30 (m, 1H), 5.82 (m, 1H), 5.31 (m, 1H), 4.44 (t, 1H), 4.30 (m, 2H), 4.18 (m, 1H), 3.35 (s, 3H), 3.15 (m, 2H), 2.55 (m, 1H), 2.38 (m, 1H) and 2.17 (m, 3H).
LCMS: Rf= 9.30 mins, ES+=485 (FA). XRPD data for Form | is shown in Figure 4. D80 data for Form 1 is shown in Figure 5, and TGA data for Form l is shown in Figure 6.
Example 6: Synthesis of (4-azaazoniabicyclo[2.2.2]octylsulfonyl)(tert- butoxycarbonyl)azanide—1,4—diazabicyclo[2.2.2}octane (1 :1) hydrochloride Chlorosulfonyl isocyanate (45.2 Kg, 319.4 mol) was added to toluene (194.2 Kg) and the resulting solution cooled to between about 0—6 °C. A solution of tert-butyl alcohol (23.6 Kg, 318.4 mol) in toluene (48.0 Kg) was then added over a period of 90 minutes, maintaining a temperature of between about 0-6 °C. The mixture was then stirred until consumption of tyl alcohol was complete (approximately 80 s). A solution of triethylenediamine (DABCO, 71.4 Kg, 636.5 mol) in toluene (293.0 Kg) was then added to the mixture over a period of 2.5 hours, maintaining a temperature of between about 0-6 °C. The mixture was then warmed to 20-25 °C and d for 8 hours. The solid product was isolated by centrifugal filtration under a nitrogen atmosphere and washed with toluene (180.8 Kg) and then tert-butyl methyl ether (51.0 galions) and spun until no r liquors were seen to be expelled (approximately 60 minutes). The solids were then further dried under vacuum to afford 132.9 Kg of (4-azaazoniabicyclo[2.2.2]octy|sulfonyl)(tert—butoxycarbonyl)azanide—1 ,4- diazabicyclo[2.2.2]octane (1:1) hydrochloride.
Example 7: Synthesis of seed l-216 hydrochloride salt Form | used in Example 5 Step 1: tert-butyl [({(1S,28,4R)—4—[(6-{[(1R,2S)chloro—2—methoxy—2,3—dihydro- 1 H—indenyl]amino}pyrimidinyl)oxy]hydroxycyclopentyl}methoxy)sulfonyl]carbamate To a solution of (4-azaazoniabicyclo[2.2.2]oct—1-ylsulfonyl)(tert— butoxycarbonyl)azanide-1,4-diazabicyclo[2.2.2]octane (1 :1) hydrochloride (43.4 g, 98.6 mmol) in itrile (30 mL), in a 500 mL reactor, was added (1S,25,4R)—4—(6-((1R,ZS)chloro methoxy—2,3-dihydro-1H-indenylamino)pyrimidinyloxy)—2-(hydroxymethyl)cyclopentanol (27) (10 g, 24.6 mmol) in N-methylpyrrolidinone (60 mL). The resultant thick slurry was stirred at ambient temperature for 3 hours. Upon on completion, water (66.6 mL) was added slowly at ambient temperature. To the resulting mixture, ethyl acetate (66.7 mL) was added. The aqueous layer was extract three times with ethyl acetate (3 x 66.6 mL). The combined organic layers were washed once with water (66.7 mL) and once with ted sodium chloride in water (66.7 mL). The combined organic layers were dried over magnesium sulfate (3 g), filtered and concentrated. This t was taken on to the next step without r purification.
Step 2: ation of ((1S,28,4R)—4w(6-((1R,28)—5-chloro—2-methoxy—2,3—dihydro—1H- indenylamino)pyrimidinyloxy)hydroxycyclopentyl)methyl sulfamate hydrochloride Form l (l-216 HCI Form I) The residue from Step 1 (10 g) was taken up in acetonitrile (81.5 mL) and the resulting solution cooled to a temperature of less than 5 °C. 12.0 M Hydrochloric acid (27.7 mL, 904 mmol) was added slowly maintaining an internal temperature of less than 10 °C and the resulting mixture was stirred at 0 ”C for 4 hours then warmed to room temperature and stirred for 15 h. HPLC indicated no Boc protected intermediate remaining. To the reaction mixture was added water (20 mL, 1110 mmol) and the temperature was increased to 60 °C. Once at temperature the reaction was seeded with al prepared as described in Example 8. The seed held and the reaction was allowed to cool slowly to room temperature and stir for 16h.
The reaction was ed and washed with water (66 mL) and dried overnight under reduced pressure. This gave a white solid (5.3 g, 9.8 mmol) of the t in 60% yield 1H NMR (300 MHz,CD3OD,6): 8.19(s, 1H), 7.25 (s, 1H), 7.18(m, 2H), 5.97 (s, 1H), 5.58 (m, 1H), 5.35 (m, 1H), 4.35 (m, 2H), 4.15 (m, 2H), 3.30 (s, 3H), 3.05 (m, 2H), 2.51 (m, 1H), 2.30 (m, 2H) and 2.00 (m, 2H).
Example 8: Synthesis of seed l-216 hloride salt Form I used in Example 7 tert-Butyl [({(1S,2$,4R)-4—[(6-{[(1 R,28)chloromethoxy—2,3—dihydro- enyl]amino}pyrimidinyl)oxy]hydroxycyclopentyi}methoxy)sulfonyl]carbamate (1 9; prepared in a similar manner to that bed in Example 7, Step 1) was taken up in acetonitrile (8.12 mL) and the ing solution cooled to a temperature of less than 5°C. 12.0 M Hydrochloric acid (2.7 mL, 89 mmol) was added slowly maintaining an internal temperature of less than 10°C and the resulting mixture was stirred at 0°C for 4 hours then warmed to room temperature and stirred for 15h. HPLC ted no Boc protected intermediate remaining. To the reaction mixture was added a small amount of water and sodium bicarbonate to neutralize, but this amount did not completely neutralize the solution. The on mixture was concentrated at 40 °C and then the solution was cooled to room temperature and stirred overnight. Further water was added and the solution was stirred an hour . The reaction was filtered and washed with water and dried overnight under d pressure to gave a white solid (0.598 g, 1.15 mmol) of the product in 68% yield 1H NMR (300 MHz, CD30D, 6): 8.19 (s, 1H), 7.25 (s, 1H), 7.18 (m, 2H), 5.97 (s, 1H), 5.58 (m, 1H), 5.35 (m, 1H), 4.35 (m, 2H), 4.15 (m, 2H), 3.30 (s, 3H), 3.05 (m, 2H), 2.51 (m, 1H), 2.30 (m, 2H) and 2.00 (m, 2H).
This white solid (250 mg, 0.479 mmol) was suspended in isopropyl alcohol (2.5 mL, 32.6 mmol) and heated to 60°C. 8.0 M HCI in water (0.120 1111., 0.959 mmol) was added and some dissolution occured. After 15 minutes, the heating was removed and the suspension was cooled to room temperature and stirred overnight. The solid was ed and washed with 5% aq. IPA and dried overnight under reduced pressure. This afforded the title compound (0.204 g, 0.391 mmol) in 81.6% yield. "H NMR (300 MHz, CD3OD, 6): 8.19 (s, 1H), 7.25 (s, 1H), 7.18 (m, 2H), 5.97 (s, 1H), 5.58 (m, 1H), 5.35 (m, 1H), 4.35 (m, 2H), 4.15 (m, 2H), 3.30 (s, 3H), 3.05 (m, 2H), 2.51 (m, 1H), 2.30 (m, 2H) and 2.00 (m, 2H).
Example 9: Preparation of ((1S,28,4R)—4—(6—((1R,28)—5—chloromethoxy-2,3—dihydro-1H- indenylamino)pyrimidin—4-yloxy)—2—hydroxycyclopentyl)methyl sulfamate hydrochloride Form ll (l-216 HCI Form II) l-216 HCI Form | (0.5 9, prepared as described in Example 5 above) was slurried in water (10 ml.) at ambient temperature for 18h. The resulting solids were filtered, washed with water (2.5 mL) and dried under reduced pressure at ambient temperature for 16h. This afforded Form ll of l-216 HCI as a white solid (0.45 g) in 90% yield. 1H NMR (300 MHz, CD300, 6): 8.35 (s, 1H), 7.30 (s, 1H), 7.21 (m, 2H), 6.17 (m, 1H), 5.65 (m, 1H), 5.35 (m, 1H), 4.41 (t, 1H), 4.30 (m, 2H), 4.17 (m, 1H), 3.36 (s, 3H), 3.10 (m, 2H), 2.55 (m, 1H), 2.35 (m, 1H) and 2.10 (m, 3H).
LCMS: Rf= 9.29 mins, ES+=485 (FA). XRPD data for Form II is shown in Figure 10.
Example 10: in vivo Tumor Pharmacodynamic Model HCT116 tumor cells (2x106) (ATCC #CCL-247) in 100 uL phosphate buffered saline were aseptically injected into the subcutaneous space in the right dorsal flank of female Ncr nude mice (age 5-8 weeks, Charles River) using a 26-gauge . Beginning on day 7 after inoculation, tumors were measured twice weekly using a vernier caliper. Tumor s were calculated using standard procedures (0.5 x (length x width2)). When the tumors reached a volume of approximately 3-700mm3 mice were randomized into groups and injected subcutaneously with compound inhibitor (200 uL) at various doses. Tumors were harvested and crushed in Covaris bags and then transferred to glass tubes on dry ice for sonication in the Covaris E200. Mammalian protein extraction reagent (MPER) lysis buffer (Pierce, 78501) was supplemented with the following (final concentrations): 1x protease tor cocktail set (Calbiochem, 539134), 5 mM o-phenanthroline in dimethyl sulfoxide (DMSO) (Sigma, #P1294 and Sigma DMSO #D2650), 10 mM etimide (Sigma), 2 mM sodium orthovanadate (Sigma, #36508), 25 mM sodium fluoride, and 25 mM B—glycerophosphate. Cold lysis buffer (300-800 pL) was added to the tumors just before tion. The sonication steps were: 10 seconds, 1%500mV50, 20 seconds, 20%500mV50, 20 seconds, 10%500mV50. After sonication samples were placed on wet ice, poured into orf tubes and spun at 14000 rpm for 20 min at 4°C in a microfuge. Supernatants were transferred to new tubes and protein concentrations were ined using the Pierce bicinchoninic acid (BOA) reagents and protein standards. Tumor lysates were stored at -80°C.
For quantitative analysis of neddylated cullins the procedure was as follows: 20 pg of tumor lysate with lithium dodecyl sulfate (LDS) loading buffer and sample reducing agent (lnvitrogen NP0007 and NP0004) was loaded onto 442% is gels, 1.5 mM, 10 well gels rogen NP0315Box). Gels were run at 150V in 2—(N-morpholino) ethane sulfonic acid (MES) running buffer (lnvitrogen NP0002). Gels were cut at appropriate molecular weight marker and transferred to L (Millipore, IPFL00010) using a semi dry transfer apparatus (Amersham Biosciences, TE70). After transfer, membranes were blocked in y blocker (Ll-COR Biosciences # 927-40000), then incubated with y antibodies in Odyssey r + 0.1% Tween-20 (Sigma #P7949) overnight at 4 degrees. Membranes were washed three times in tris buffered saline with Tween-20 (TBST) and then incubated with Alexa Fluor 680 labeled goat anti-rabbit immunoglobulin G, heavy and light chain (lgG (H+L)) antibody (Molecular Probes Cat # A-21109). After 1 hour incubation with secondary antibody in the dark, membranes were washed 5 times with TBST and once with tris buffered saline (TBS), protected from light. Membranes were dried for at least one hour and then scanned with the Odyssey Infrared Imaging System (Ll-COR ences). The following primary antibody was used: Anti-Nedd-8 (MIL10 clone 525, developed with E-pitomics, dilution of 1:4000). Secondary antibody was used at 1:2000. Quantitation of signals on Western blots was performed with the Odyssey software.
The patent and ific ture referred to herein establishes knowledge that is available to those skilled in the art. Unless othenrvise defined, all technical and scientific terms used herein have the same meaning as commonly understood by those d in the art to which the invention belongs. The issued patents, applications, and nces that are cited herein are hereby incorporated by reference to the same extent as if each was specifically and individually indicated to be incorporated by reference. In the case of inconsistencies, the present disclosure, ing definitions, is intended to control.
While a number of embodiments of the ion have been described, it is apparent that the provided basic examples may be altered to convey other ments, which utilize the compounds, methods, etc. of the invention. It will thus be appreciated that the scope of the invention has been represented herein by way of example and is not intended to be limited by the specific embodiments.

Claims (9)

WHAT IS CLAIMED IS:
1. A chemical entity which is the compound S,4R)[(6-{[(1R,2S) chloro-2 methoxy-2,3-dihydro-1H-indenyl]amino}pyrimidinyl)oxy] hydroxycyclopentyl}methyl sulfamate of formula I-216: OCH3 N I-216 O N H2N S O or a pharmaceutically acceptable salt or solvate thereof.
2. The chemical entity of claim 1, wherein said chemical entity is the hydrochloride salt or a pharmaceutically acceptable solvate thereof.
3. The chemical entity of claim 2, n said chemical entity is substantially crystalline Form I, wherein Form I is characterized by an x-ray powder diffraction (XRPD) n having peaks at 2θ angles of 4.5°, 15.2°, 21.3°, 21.8° and 24.0°.
4. The chemical entity of claim 3, wherein Form I is characterized by an XRPD pattern having peaks at 2θ angles of 4.5°, 7.5°, 14.4°, 14.6°, 15.2°, 15.9°, 19.5°, 21.3°, 21.8°, 22.4°, 22.7°, 24.0° and 24.8°.
5. The chemical entity of claim 4, wherein Form I is characterized by an XRPD pattern having peaks at 2θ angles of 4.5°, 7.5°, 8.9°, 9.8°, 13.3°, 14.4°, 14.6°, 15.2°, 15.9°, 17.2°, 19.5°, 20.0°, 21.3°, 21.8°, 22.4°, 22.7°, 24.0°, 24.8°, 25.7° and 26.4°. ‐ 63 ‐
6. The chemical entity of claim 2, wherein said chemical entity is substantially crystalline Form I characterized by an x ray powder diffraction (XRPD) n having a reference peak with a 2θ angle of 4.5 ± 0.3º, and having peaks at 2θ angles of 10.7º, 16.8º, 17.3º and 19.5º relative to the reference peak.
7. The chemical entity of claim 6, wherein Form I is characterized by an x ray powder diffraction (XRPD) pattern having a reference peak with a 2θ angle of 4.5 ± 0.3º, and having peaks at 2θ angles of 3.0º, 9.9º, 10.1º, 10.7º, 11.4º, 15.0º, 16.8º, 17.3º, 17.9º, 18.2º, 19.5º and 20.3º relative to the nce peak.
8. The chemical entity of claim 7, wherein Form I is terized by an x ray powder diffraction (XRPD) pattern having a reference peak with a 2θ angle of 4.5 ± 0.3º, and having peaks at 2θ angles of 3.0º, 4.4º, 5.3º, 8.8º, 9.9º, 10.1º, 10.7º, 11.4º, 12.7º, 15.0º, 15.5º, 16.8º, 17.3º, 17.9º, 18.2º, 19.5º, 20.3º, 21.2º and 21.9º relative to the reference peak.
9. The chemical entity of any one of claims 3-8, wherein Form I is characterized by an XRPD pattern substantially as shown in
NZ622220A 2011-08-24 2012-08-23 Inhibitors of nedd8-activating enzyme NZ622220B2 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201161526830P 2011-08-24 2011-08-24
US61/526,830 2011-08-24
PCT/US2012/052007 WO2013028832A2 (en) 2011-08-24 2012-08-23 Inhibitors of nedd8-activating enzyme

Publications (2)

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NZ622220A NZ622220A (en) 2016-04-29
NZ622220B2 true NZ622220B2 (en) 2016-08-02

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