NZ615586B2 - Phosphoinositide 3-kinase inhibitor with a zinc binding moiety - Google Patents
Phosphoinositide 3-kinase inhibitor with a zinc binding moiety Download PDFInfo
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- NZ615586B2 NZ615586B2 NZ615586A NZ61558612A NZ615586B2 NZ 615586 B2 NZ615586 B2 NZ 615586B2 NZ 615586 A NZ615586 A NZ 615586A NZ 61558612 A NZ61558612 A NZ 61558612A NZ 615586 B2 NZ615586 B2 NZ 615586B2
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- ILWRPSCZWQJDMK-UHFFFAOYSA-N triethylazanium;chloride Chemical compound Cl.CCN(CC)CC ILWRPSCZWQJDMK-UHFFFAOYSA-N 0.000 description 1
- 125000002023 trifluoromethyl group Chemical group FC(F)(F)* 0.000 description 1
- 150000004684 trihydrates Chemical class 0.000 description 1
- NHDIQVFFNDKAQU-UHFFFAOYSA-N tripropan-2-yl borate Chemical compound CC(C)OB(OC(C)C)OC(C)C NHDIQVFFNDKAQU-UHFFFAOYSA-N 0.000 description 1
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- ZDPHROOEEOARMN-UHFFFAOYSA-M undecanoate Chemical compound CCCCCCCCCCC([O-])=O ZDPHROOEEOARMN-UHFFFAOYSA-M 0.000 description 1
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- NQPDZGIKBAWPEJ-UHFFFAOYSA-M valerate Chemical class CCCCC([O-])=O NQPDZGIKBAWPEJ-UHFFFAOYSA-M 0.000 description 1
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- PNVNVHUZROJLTJ-UHFFFAOYSA-N venlafaxine Chemical compound C1=CC(OC)=CC=C1C(CN(C)C)C1(O)CCCCC1 PNVNVHUZROJLTJ-UHFFFAOYSA-N 0.000 description 1
- 229960004688 venlafaxine Drugs 0.000 description 1
- JXLYSJRDGCGARV-XQKSVPLYSA-N vincaleukoblastine Chemical compound C([C@@H](C[C@]1(C(=O)OC)C=2C(=CC3=C([C@]45[C@H]([C@@]([C@H](OC(C)=O)[C@]6(CC)C=CCN([C@H]56)CC4)(O)C(=O)OC)N3C)C=2)OC)C[C@@](C2)(O)CC)N2CCC2=C1NC1=CC=CC=C21 JXLYSJRDGCGARV-XQKSVPLYSA-N 0.000 description 1
- OGWKCGZFUXNPDA-XQKSVPLYSA-N vincristine Chemical compound C([N@]1C[C@@H](C[C@]2(C(=O)OC)C=3C(=CC4=C([C@]56[C@H]([C@@]([C@H](OC(C)=O)[C@]7(CC)C=CCN([C@H]67)CC5)(O)C(=O)OC)N4C=O)C=3)OC)C[C@@](C1)(O)CC)CC1=C2NC2=CC=CC=C12 OGWKCGZFUXNPDA-XQKSVPLYSA-N 0.000 description 1
- HHJUWIANJFBDHT-KOTLKJBCSA-N vindesine Chemical compound C([N@]1C[C@@H](C[C@]2(C(=O)OC)C=3C(=CC4=C([C@]56[C@H]([C@@]([C@H](O)[C@]7(CC)C=CCN([C@H]67)CC5)(O)C(N)=O)N4C)C=3)OC)C[C@@](C1)(O)CC)CC1=C2NC2=CC=CC=C12 HHJUWIANJFBDHT-KOTLKJBCSA-N 0.000 description 1
- 229960002066 vinorelbine Drugs 0.000 description 1
- GBABOYUKABKIAF-IELIFDKJSA-N vinorelbine Chemical compound C1N(CC=2C3=CC=CC=C3NC=22)CC(CC)=C[C@H]1C[C@]2(C(=O)OC)C1=CC([C@]23[C@H]([C@@]([C@H](OC(C)=O)[C@]4(CC)C=CCN([C@H]34)CC2)(O)C(=O)OC)N2C)=C2C=C1OC GBABOYUKABKIAF-IELIFDKJSA-N 0.000 description 1
- 125000000391 vinyl group Chemical group [H]C([*])=C([H])[H] 0.000 description 1
- 201000002498 viral encephalitis Diseases 0.000 description 1
- 230000017613 viral reproduction Effects 0.000 description 1
- 229960004449 vismodegib Drugs 0.000 description 1
- 230000004393 visual impairment Effects 0.000 description 1
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- 239000008215 water for injection Substances 0.000 description 1
- 229960000833 xylometazoline Drugs 0.000 description 1
- PTFCDOFLOPIGGS-UHFFFAOYSA-N zinc dication Chemical compound [Zn+2] PTFCDOFLOPIGGS-UHFFFAOYSA-N 0.000 description 1
- 239000011787 zinc oxide Substances 0.000 description 1
- 235000014692 zinc oxide Nutrition 0.000 description 1
Classifications
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/16—Amides, e.g. hydroxamic acids
- A61K31/165—Amides, e.g. hydroxamic acids having aromatic rings, e.g. colchicine, atenolol, progabide
- A61K31/166—Amides, e.g. hydroxamic acids having aromatic rings, e.g. colchicine, atenolol, progabide having the carbon of a carboxamide group directly attached to the aromatic ring, e.g. procainamide, procarbazine, metoclopramide, labetalol
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/435—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
- A61K31/4353—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems
- A61K31/4365—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems the heterocyclic ring system having sulfur as a ring hetero atom, e.g. ticlopidine
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/495—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
- A61K31/505—Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
- A61K31/519—Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with heterocyclic rings
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
- A61P35/02—Antineoplastic agents specific for leukemia
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D213/00—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members
- C07D213/02—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members
- C07D213/04—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom
- C07D213/24—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom with substituted hydrocarbon radicals attached to ring carbon atoms
- C07D213/28—Radicals substituted by singly-bound oxygen or sulphur atoms
- C07D213/30—Oxygen atoms
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D241/00—Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings
- C07D241/02—Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings
- C07D241/10—Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings having three double bonds between ring members or between ring members and non-ring members
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D495/00—Heterocyclic compounds containing in the condensed system at least one hetero ring having sulfur atoms as the only ring hetero atoms
- C07D495/02—Heterocyclic compounds containing in the condensed system at least one hetero ring having sulfur atoms as the only ring hetero atoms in which the condensed system contains two hetero rings
- C07D495/04—Ortho-condensed systems
Abstract
Disclosed is the compound of Formula I wherein R is hydrogen or an acyl group, particularly N-hydroxy-2-(((2-(6-methoxypyridin-3-yl)-4-morpholinothieno[3,2-d]pyrimidin-6-yl)methyl)(methyl)amino)pyrimidine-5-carboxamide. Also disclosed are pharmaceutical compositions comprising such compounds and the use of such compounds in the the manufacture of medicaments for treatment of phosphoinositide 3 -kinase related diseases and disorders such as cancer. The instant application further relates to the the treatment of histone deacetylase related disorders and diseases related to both histone deacetylase and phosphoinositide 3-kinase. use of such compounds in the the manufacture of medicaments for treatment of phosphoinositide 3 -kinase related diseases and disorders such as cancer. The instant application further relates to the the treatment of histone deacetylase related disorders and diseases related to both histone deacetylase and phosphoinositide 3-kinase.
Description
/031361
PHOSPHOINOSITIDE 3-KINASE INHIBITOR WITH A ZINC BINDING
MOIETY
RELATED APPLICATIONS
This ation claims the benefit ofUS. Provisional Application No.
,849, filed on April 1, 2011 and 61/559,489, filed on November 14, 2011. The
entire teachings of the above applications are incorporated herein by reference.
BACKGROUND OF THE INVENTION
Phosphoinositides (PIS), which are phosphorylated derivatives of
phosphatidylinositol, are essential in eukaryotic cells, regulating nuclear processes,
cytoskeletal dynamics, signalling and ne trafficking. Among the enzymes
involved in P1 lism, PI3-kinases (PI3K) have attracted special attention because of
their oncogenic properties and potential as drug targets. P13 -kinases phosphorylate
phosphatidylinositols or PIs at the 3-position of the inositol ring. (Lindmo et. al. Journal
ofCell Science 119, 605-614, 2006). The 3-phosphorylated phospholipids generated by
PI3K activity bind to the pleckstrin homology (PH) domain of n kinase B (PKB),
g translocation ofPKB to the cell ne and subsequent phosphorylation of
PKB. Phosphorylated PKB inhibits apoptosis-inducing proteins such as FKHR, Bad, and
caspases, and is t to play an important role in cancer progression. The PI3Ks are
divided into classes I—111, and class I is r subclassified into classes Ia and lb. Among
these ms, class Ia enzymes are thought to play the most important role in cell
proliferation in response to growth factor-tyrosine kinase pathway activation (Hayakawa
et al., Bioorganic & Medicinal Chemistry 14 6847—6858, 2006). Three frequent mutations
in cancer constitutively activate PI3K0L and, when expressed in cells, they drive the
oncogenic transformation and chronic activation of downstream signalling by molecules
such as PKB, 86K and 4E bpl that is commonly seen in cancer cells. (Stephens et al.,
Current Opinion in Pharmacology, 5(4) 357-365, 2005). As such, PI3-kinases are
attractive targets for the treatment of proliferative diseases.
There are several known PI3-kinase tors including Wortmannin and
LY294002. Although Wortmannin is a potent PI3K inhibitor with a low nanomolar IC50
value, it has low in vivo anti-tumor activity. (Hayakawa et al., Bioorg. Med. Chem.
14(20), 6847-6858 (2006)). Recently, a group of morpholine substituted quinazoline,
pyridopyrimidine and pyrimidine compounds have been reported to be effective in
inhibiting PISkinase pl lOu. (Hayakawa, 6847-6858). Oral dosage of a morpholine
substituted thienopyrimidine compound (GDC-094 1) has shown tumor suppression in
glioblastoma xenografts in viva. (Folkes et al., Journal ofMedicinal Chemistry, 51, 5522-
5532, 2008). The following publications disclose a series of pyrimidine,
pyridopyrimidine and quinazoline based PIS-Kinase tors: ; WO
70740; WC 2007/127183 ; US. Patent Publication 20080242665.
0 [N]
o ’N
1 \
00 N
o N Q N)fiim
O ogx
/s*o
LY294002 Wortmannin GDC-0941
Histone acetylation is a reversible modification, with deacetylation being catalyzed
by a family of enzymes termed histone deacetylases (HDACs). HDAC’s are ented
by 18 genes in humans and are divided into four distinct classes (JM01 Biol, 2004, 338:1,
17-31). In mammalians class I HDAC’s (HDACl—3, and HDAC8) are related to yeast
RPD3 HDAC, class 2 (HDAC4-7, HDAC9 and HDAC10) related to yeast HDAl, class 4
(HDACl l), and class 3 (a distinct class assing the sirtuins which are related to
yeast Sir2).
Csordas, Biochem. J., 1990, 286: 23-38 teaches that histones are subject to post-
translational acetylation of the s-amino groups of inal lysine residues, a reaction
that is catalyzed by histone acetyl transferase (HATI). ation lizes the positive
charge of the lysine side chain, and is thought to impact chromatin structure. Indeed,
access of transcription factors to chromatin templates is enhanced by e
hyperacetylation, and enrichment in underacetylated histone H4 has been found in
transcriptionally silent regions of the genome on et (11., Science, 1996, 272:408-
411). In the case of tumor suppressor genes, transcriptional silencing due to histone
modification can lead to oncogenic transformation and cancer.
Several classes of HDAC inhibitors currently are being evaluated by clinical
investigators. Examples e hydroxamic acid derivatives, Suberoylanilide
hydroxamic acid (SAHA), PXDlOl and LAQ824, are currently in the clinical
development. In the benzamide class of HDAC inhibitors, MS-275, MGCD0103 and CI-
994 have reached clinical . Mourne et al. (Abstract #4725, AACR 2005),
demonstrate that thiophenyl modification of benzamides significantly enhance HDAC
inhibitory activity against HDAC 1.
Certain cancers have been effectively treated with such a combinatorial approach;
however, treatment regimes using a il of cytotoxic drugs often are limited by dose
limiting toxicities and drug-drug interactions. More recent advances with molecularly
targeted drugs have provided new approaches to ation treatment for cancer,
allowing multiple targeted agents to be used simultaneously, or combining these new
therapies with standard chemotherapeutics or radiation to improve outcome without
reaching dose limiting toxicities. r, the ability to use such combinations currently
is limited to drugs that show compatible pharmacologic and pharmacodynamic ties.
In on, the regulatory requirements to demonstrate safety and efficacy of ation
therapies can be more costly and lengthy than corresponding single agent trials. Once
approved, combination strategies may also be associated with increased costs to patients,
as well as decreased patient compliance owing to the more intricate dosing paradigms
required.
SUMMARY OF THE ION
The present invention relates to a compound of Formula I:
and pharmaceutically acceptable salts thereof, where R is hydrogen or an acyl group. The
acyl group is preferably R1C(O)-, where R1 is substituted or tituted -alkyl,
preferably -alkyl, and more preferably C1-C6-alkyl; substituted or unsubstituted C2-
C24-alkenyl, preferably C2—C10—alkenyl, and more preferably C2-C6-alkenyl; substituted or
unsubstituted C2-C24-alkynyl, preferably C2—C10—alkynyl, and more preferably C2—C6-
alkynyl; tuted or unsubstituted aryl, preferably substituted or unsubstituted ;
or substituted or unsubstituted heteroaryl.
The invention also relates to pharmaceutical compositions comprising a nd
of Formula I, or a pharmaceutically acceptable salt thereof, in combination with a
ceutically acceptable excipient or carrier.
The compounds of Formula 1 and, in particular, Compound 1, have advantageous
properties for use as therapeutic agents, such as for the treatment of cancers and other
diseases and disorders associated with P13 kinase actitivy and/or HDAC activity.
Compound 1, for example, has potent inhibitory ty against the molecular targets
P13K and HDAC and potent antiproliferative activity against a variety of cancer cell lines
in vitro. Compound 1 has significant oral bioavailability as observed in animal models.
Upon either oral or intravenous dosing in xenografi tumor bearing mice, the compound
shows significant uptake by the tumor tissue and pharmacodynamic ty in tumor
tissue. Compound 1 also shows substantial antitumor activity in mouse xenograft tumor
models following either oral or intravenous stration. The compound also has a
ble safety profile, as shown, for example, by genotoxicity testing using the Ames
test.
The invention further s to the use of the compounds of the invention in the
treatment of PI3K d diseases and disorders such as . These compounds further
act as an HDAC inhibitor by virtue of its ability to bind zinc ions. The compounds are
active at multiple therapeutic targets and are effective for treating a variety of diseases.
Moreover, in some cases it has been found that these compounds have enhanced activity
when compared to the activities of combinations of separate molecules individually having
nase inhibitory activity and HDAC tory activity. In other words, the
ation of P13 e and HDAC inhibitory activity in a single molecule may provide
a synergistic effect as compared to the PI3 -kinase and HDAC inhibitors separately.
Moreover, the efficacy of single-agent P13K pathway inhibitors is limited by the
presence ofprimary/acquired genetic alterations and activation of multiple pro-survival
and growth pathways (Engelman (2009) Nature Reviews Cancer, 9: 550-562). Inhibition
of P13K by single-agent P13K pathway inhibitors can actually late signaling of the
RAF-MEK-ERK pathway by the e of negative feedback loops. The compounds of
the invention, by virtue of their integrated P13K/HDAC inhibitory activities, provide the
potential to overcome the limitations in the treatment of cancers with single-target P13K
inhibitors. The compounds of the invention disrupt cancer networks in in vivo and in vitro
experiments, resulting from durable inhibition of the P13K-AKT-mTOR y, the
inhibition of the RAF—MEK-ERK pathway, and the downregulation of receptor tyrosine
kinase (RTK) n levels. In addition, the compounds of the ion induce cell cycle
arrest and sis resulting from the upregulation of tumor suppressors p53 and p21 in
tumor cell lines in vitro. Accordingly, compounds of the invention have the potential to
overcome y and acquired drug resistance and may be more ious than mono-
treatment with single-agent PI3K pathway inhibitors in clinical applications.
r aspect of the invention provides methods of inhibiting P13 kinase activity,
by contacting a PI3 kinase with an ive inhibitory amount of a compound of Formula
I, or a pharmaceutically acceptable salt thereof.
BRIEF DESCRIPTION OF THE DRAWINGS
Figure 1 is a graph of concentration of Compound 1 versus time in plasma and
tumor tissue following oral administration to H2122 xenograft tumor-bearing nude mice.
Figure 2A is a graph of Compound 1 plasma concentration versus time in Daudi
xenograft tumor-bearing Scid mice following oral dosing at 25, 50 and 100 mg/kg.
Figure 2B is a graph of Compound 1 tumor concentration versus time in Daudi
xenograft bearing Scid mice following oral dosing at 25, 50 and 100 mg/kg.
Figure 2C is a graph of Compound 1 concentration versus time in plasma and
tumor tissue in Daudi xenograft tumor-bearing Scid mice ing oral closing at 100
mg/kg.
Figure 3 presents Western blots of tumor tissue extracts from control and
Compound 1 treated (25, 50 and 100 mg/Kg) Scid mice bearing Daudi tumor xenografts.
Figure 4 is a graph of Compound 1 plasma concentration versus time in beagle
dogs following oral or intravenous dosing.
Figure 5A is a graph of tumor growth versus time in H2122 xenograft tumor—
bearing nude mice treated with Compound 1 or vehicle.
Figure 5B is a graph of tumor growth versus time in Daudi xenograft tumor-
bearing nude mice treated with Compound 1 or vehicle.
Figure 5C is a graph of tumor growth versus time in OPM2 xenograft tumor-
bearing nude mice treated with Compound 1 or e.
Figure 6 is a graph showing circulating blood levels of T and B lymphocytes
following treatment with Compound 1 or vehicle.
Figures 7A to 7G present Western blots of extracts from control and Compound 1
treated H460 (Kras, PI3K) cells. GDC is GDC-0941; LBH is LBH—589.
Figures 8A to 8C present Western blots of extracts from control and Compound 1
treated H1975 (EGFR, PI3K), BT474 (HER2, PI3K), H1975 (EGFR, PI3K), A375 (B-
Raf) and RPMI-822 (p53') cells.
Figure 9 is a graph of tumor growth versus time in Daudi xenograft tumor—bearing
Scid mice treated orally with nd 1 or vehicle.
Figure 10 is a graph of tumor growth versus time in Daudi xenograft bearing
Scid mice treated with vehicle, Compound 1, SAH, GDC—094l or a combination of SAHA
and GDC-094l.
Figure ll is a graph of tumor growth versus time in SU—DHL4 xenograft tumor-
bearing nude mice treated orally with Compound 1 or vehicle.
Figure 12 is a graph of tumor growth versus time in OPM2 xenograft tumor—
bearing nude mice d with Compound 1 or e.
Figure 13 is a graph of tumor growth versus time in MMlS xenograft tumor-
g SCID mice treated with Compound 1 or vehicle.
Figure 14 is a graph of tumor growth versus time in MMlR xenograft tumor-
bearing SCID mice treated with Compound 1 or vehicle.
Figure 15 presents Western blots of tumor extracts from Compound 1 treated SCID
mice bearing Daudi, SuDHL-4, HS-Sultan, DOHH—Z, OPM-2, MMlR or MMlS
xenograft tumors.
Figure 16 is a graph of tumor growth versus time in Daudi bearing SCID
mice treated with Compound 1, CAL-101 or vehicle.
Figure 17 is a graph of tumor growth versus time in Daudi tumor-bearing SCID
mice treated with Compound 1, cyclophosphamide, combination of Compound 1 and
cyclophosphamide or vehicle.
Figure 18 is a graph of tumor growth versus time in MMlS tumor-bearing SCID
mice treated with Compound 1, lenalidomide, combination of Compound 1 and
domide or vehicle.
ED DESCRIPTION OF THE INVENTION
In a preferred embodiment, the compound of Formula I is set forth below:
ycw s
\ A0|\N
/ 0/
(hereinafter “Compound 1”, also referred to as N-hydroxy(((2—(6-methoxypyridin
yl)morpholinothieno [3 ,2-d]pyrimidinyl)methyl)(methyl)amino)pyrimidine-5 -
carboxamide or a pharmaceutically acceptable salt thereof.
The invention further provides methods for the prevention or treatment of diseases
or conditions ing aberrant proliferation, entiation or survival of cells. In one
embodiment, the invention further provides for the use of one or more compounds of the
invention in the manufacture of a medicament for halting or decreasing diseases involving
aberrant eration, differentiation, or survival of cells. In a preferred embodiment, the
disease is cancer. In one embodiment, the invention s to a method of treating cancer
in a subject in need of treatment comprising administering to said t a therapeutically
effective amount of a compound of the invention.
The term "cancer" refers to any cancer caused by the proliferation of malignant
neoplastic cells, such as tumors, sms, carcinomas, sarcomas, leukemias, lymphomas
and the like. For example, cancers include, but are not limited to, mesothelioma,
leukemias and lymphomas such as cutaneous T-cell lymphomas (CTCL), aneous
peripheral T-cell lymphomas, lymphomas associated with human T—cell lymphotrophic
Virus (HTLV) such as adult T-cell leukemia/lymphoma (ATLL), B-cell lymphoma, acute
nonlymphocytic leukemias, chronic cytic leukemia, chronic enous
leukemia, acute myelogenous leukemia, lymphomas, and multiple myeloma, non-Hodgkin
ma, acute lymphatic leukemia (ALL), chronic lymphatic leukemia (CLL),
Hodgkin’s lymphoma, Burkitt lymphoma, adult T-cell leukemia lymphoma, myeloid
ia (AML), chronic myeloid leukemia (CML), or hepatocellular carcinoma. Further
examples include myelodisplastic syndrome, childhood solid tumors such as brain tumors,
neuroblastoma, blastoma, Wilms' tumor, bone tumors, and soft—tissue sarcomas,
common solid tumors of adults such as head and neck cancers (e.g., oral, laryngeal,
nasopharyngeal and esophageal), genitourinary s (e.g., prostate, bladder, renal,
e, ovarian, testicular), lung cancer (e.g., small-cell and non small cell), breast cancer,
pancreatic cancer, melanoma and other skin cancers, stomach cancer, brain tumors, tumors
related to Gorlin’s syndrome (e.g., medulloblastoma, meningioma, etc.), and liver cancer.
onal exemplary forms of cancer which may be treated by the subject compounds
include, but are not limited to, cancer of skeletal or smooth muscle, stomach cancer,
cancer of the small ine, rectum carcinoma, cancer of the salivary gland, endometrial
cancer, adrenal cancer, anal cancer, rectal cancer, parathyroid cancer, and pituitary cancer.
Additional cancers that the nds described herein may be useful in
preventing, treating and studying are, for example, colon carcinoma, familiary
adenomatous polyposis carcinoma and hereditary non-polyposis ctal cancer, or
melanoma. Further, s include, but are not limited to, labial carcinoma, larynx
carcinoma, hypopharynx carcinoma, tongue carcinoma, salivary gland carcinoma, gastric
carcinoma, arcinoma, thyroid cancer (medullary and ary thyroid carcinoma),
renal carcinoma, kidney parenchyma oma, cervix carcinoma, uterine corpus
carcinoma, endometrium carcinoma, chorion carcinoma, testis carcinoma, urinary
carcinoma, melanoma, brain tumors such as glioblastoma, astrocytoma, meningioma,
medulloblastoma and peripheral neuroectodermal tumors, gall bladder carcinoma,
bronchial carcinoma, multiple myeloma, basalioma, teratoma, retinoblastoma, choroidea
melanoma, seminoma, rhabdomyosarcoma, craniopharyngeoma, osteosarcoma,
chondrosarcoma, myosarcoma, liposarcoma, fibrosarcoma, Ewing sarcoma, and
plasmocytoma. In one aspect of the invention, the t ion provides for the use
of one or more compounds of the invention in the manufacture of a medicament for the
treatment of cancer.
In one ment, the compounds of the invention are used to treat a
logical cancer or hematological precancerous condition. Hematological cancers
include leukemias, lymphomas and multiple myeloma. Examples e lymphocytic
leukemias, such as acute lymphocytic ia, ing precursor B acute
lymphoblastic ia, precursor T acute lymphoblastic leukemia, Burkitt's leukemia,
and acute biphenotypic ia; and chronic lymphocytic leukemia, including B-cell
prolymphocytic leukemia; and myologenous leukemias, such as acute myologenous
leukemia, including acute promyelocytic leukemia, acute myeloblastic leukemia, and
acute megakaryoblastic leukemia; and chronic myologenous leukemia, including chronic
monocytic leukemia; acute monocytic leukemia. Other leukemias include hairy cell
2012/031361
ia; T-cell prolymphocytic leukemia; large granular lymphocytic leukemia; and
Adult T-cell leukemia. Lymphomas include Hodgkin’s lymphoma and Non-Hodgkin’s
lymphoma, including B-cell lymphomas, T—cell lymphomas, such as cutaneous T-cell
lymphoma, and NK cell lymphomas. logical cerous conditions include
myelodysplastic syndrome and myeloproliferative disorders, such as primary
myeloflbrosis, polycythemia vera, and essential thrombocythemia.
nds of the invention have been shown to induce reversible lymphopenia
and are ore of use for ng or decreasing the ating levels of cancer cells of
lymphocytic lineage. Such compounds are also of use for treating autoimmune disorders
or for modulating an immune response.
In one embodiment, the invention provides a method for reducing the ating
lymphocyte count in a subject, comprising administering to the subject an effective
amount of a compound of the invention. In a preferred embodiment, the reduced
circulating lymphocyte count is reversible, that is, the circulating lymphocyte count
returns to the normal range after dosing with the compound of the invention is stopped. In
one embodiment, the reduced circulating lymphocyte count is below the normal range and
the subject is lymphopenic. Preferably, the subject derives a therapeutic or prophylactic
benefit from the reduced circulating lymphocyte count. Such subjects e those
suffering from a hematologic disease, such as a logic cancer, those suffering from
an autoimmune disorder, and those requiring modulation of an immune response such as
patients suffering from diabetes or organ transplant recipients. In a human subject, the
circulating lymphocyte count, for example, B-lymphocytes, T-lymphocytes or both, can
drop from a normal range to a lymphopenic range. In certain diseases the circulating
lymphocyte count is abnormally high. In such diseases, the circulating lymphocyte count
can be reduced to the normal range or to a lymphopenic state.
In one embodiment, the present invention includes the use of one or more
compounds of the invention in the manufacture of a medicament that prevents further
aberrant proliferation, entiation, or survival of cells. For example, compounds of the
invention may be useful in preventing tumors from increasing in size or from reaching a
metastatic state. The subject compounds may be administered to halt the progression or
advancement of cancer or to induce tumor apoptosis or to t tumor angiogenesis. In
addition, the t invention includes use of the subject compounds to prevent a
1'6C111'I'GIICC Of cancer.
This invention fiirther embraces the treatment or prevention of cell proliferative
disorders such as hyperplasias, dysplasias and pre-cancerous lesions. Dysplasia is the
earliest form of pre-cancerous lesion recognizable in a biopsy by a ogist. The
subject compounds may be administered for the purpose of preventing said hyperplasias,
dysplasias or pre-cancerous lesions from continuing to expand or from ng
cancerous. Examples of pre—cancerous lesions may occur in skin, esophageal tissue, breast
and al intra-epithelial tissue.
"Combination therapy" includes the administration of the subject compounds in
further ation with other ically active ingredients (such as, but not limited to,
a second and different antineoplastic agent) and non-drug therapies (such as, but not
limited to, y or ion treatment). For instance, the compounds of the invention
can be used in ation with other pharmaceutically active compounds, preferably
compounds that are able to enhance the effect of the compounds of the invention. The
nds of the invention can be administered simultaneously (as a single preparation or
separate preparation) or sequentially to the other drug therapy. In general, a combination
therapy envisions administration of two or more drugs during a single cycle or course of
therapy.
In one aspect of the invention, the subject compounds may be administered in
combination with one or more separate agents that modulate protein kinases involved in
various disease states. Examples of such kinases may include, but are not d to:
serine/threonine specific kinases, receptor ne specific s and non-receptor
tyrosine specific s. Serine/threonine kinases include mitogen activated protein
kinases (MAPK), meiosis specific kinase (MEK), RAF and aurora kinase. Examples of
receptor kinase families include epidermal growth factor receptor (EGFR) (e.g.,
HERZ/neu, HER3, HER4, ErbB, ErbB2, ErbB3, ErbB4, erk, DER, Let23); fibroblast
growth factor (FGF) receptor (e.g., FGF-Rl,GFF—R2/BEK/CEK3, FGF-R3/CEK2, FGF-
R4/TKF, KGF-R); hepatocyte growth/scatter factor or (HGFR) (e.g., MET, RON,
SEA, SEX); insulin receptor (e.g. IGFI-R); Eph (e.g., CEKS, CEK8, EBK, ECK, EEK,
EHK-l, EHK-Z, ELK, EPH, ERK, HEK, MDKZ, MDKS, SEK); Axl (e.g., Mer/Nyk, Rse);
RET; and platelet-derived growth factor receptor (PDGFR) (e.g., PDGFa-R, PDGB-R,
CSFl—IUFMS, SCF-R/C—KIT, VEGF-R/FLT, NEK/FLKl, FLT3/FLK2/STK-1). Non—
receptor tyrosine kinase families include, but are not limited to, BCR—ABL (e.g., p43abl,
ARG); BTK (e.g., ITK/EMT, TEC); CSK, FAK, FPS, JAK, SRC, BMX, FER, CDK and
SYK.
In another aspect of the invention, the subject compounds may be administered in
combination with one or more separate agents that modulate non-kinase biological targets
or processes. Such targets include histone deacetylases , DNA methyltransferase
(DNMT), heat shock proteins (e.g., HSP90), hedgehog pathway-related proteins (e.g.,
sonic hedgehog, patched, smoothened) and proteosomes.
In a preferred embodiment, subject compounds may be combined with
antineoplastic agents (e.g., small les, monoclonal antibodies, antisense RNA, and
fusion proteins) that t one or more biological targets such as Zolinza, Tarceva,
Iressa, Tykerb, Gleevec, Sutent, l, Nexavar, Sorafinib, CNF2024, RG108,
BMS387032, Affinitak, Avastin, Herceptin, Erbitux, AG24322, PD325901, ZD6474,
PD184322, Obatodax, ABT737, GDC-0449, IPI—926, BMS833923, LDE225, PF-
04449913 and AEE788. Such combinations may enhance therapeutic efficacy over
efficacy achieved by any of the agents alone and may t or delay the appearance of
resistant mutational variants.
In certain preferred embodiments, the compounds of the invention are administered
in combination with a chemotherapeutic agent. Chemotherapeutic agents encompass a
wide range oftherapeutic treatments in the field of oncology. These agents are
administered at various stages of the disease for the purposes of shrinking tumors,
destroying remaining cancer cells left over after surgery, ng remission, maintaining
remission and/or alleviating symptoms ng to the cancer or its treatment. Examples of
such agents e, but are not limited to, alkylating agents such as mustard gas
tives (Mechlorethamine, cyclophosphamide, chlorambucil, melphalan, ifosfamide),
nimines (thiotepa, hexamethylmelanine), Alkylsulfonates fan), Hydrazines
and Triazines (Altretamine, Procarbazine, Dacarbazine and Temozolomide), Nitrosoureas
(Carmustine, Lomustine and Streptozocin), Ifosfamide and metal salts (Carboplatin,
Cisplatin, and Oxaliplatin); plant alkaloids such as yllotoxins (Etoposide and
Tenisopide), Taxanes (Paclitaxel and Docetaxel), Vinca alkaloids (Vincristine,
Vinblastine, Vindesine and Vinorelbine), and Camptothecan s (Irinotecan and
Topotecan); anti-tumor antibiotics such as Chromomycins (Dactinomycin and
Plicamycin), Anthracyclines (Doxorubicin, Daunorubicin, Epirubicin, ntrone,
Valrubicin and icin), and miscellaneous antibiotics such as Mitomycin,
Actinomycin and Bleomycin; anti-metabolites such as folic acid antagonists
(Methotrexate, Pemetrexed, Raltitrexed, Aminopterin), pyrimidine antagonists (5-
Fluorouracil, Floxuridine, Cytarabine, Capecitabine, and Gemcitabine), purine antagonists
captopurine and 6-Thioguanine) and adenosine deaminase tors (Cladribine,
Fludarabine, Mercaptopurine, Clofarabine, anine, Nelarabine and Pentostatin);
topoisomerase inhibitors such as topoisomerase I inhibitors (Ironotecan, topotecan) and
topoisomerase II inhibitors (Amsacrine, etoposide, ide phosphate, side);
monoclonal antibodies (Alemtuzumab, Gemtuzumab ozogamicin, Rituximab,
Trastuzumab, Ibritumomab Tioxetan, Cetuximab, Panitumumab, Tositumomab,
Bevacizumab); and miscellaneous anti-neoplastics such as ribonucleotide reductase
inhibitors (Hydroxyurea); adrenocortical d tor (Mitotane); enzymes
(Asparaginase and Pegaspargase); anti-microtubule agents (Estramustine); retinoids
otene, Isotretinoin, Tretinoin (ATRA), and Lenalidomide.
In certain preferred embodiments, the compounds of the invention are administered
in combination with a chemoprotective agent. Chemoprotective agents act to protect the
body or minimize the side effects of chemotherapy. Examples of such agents include, but
are not limited to, amfostine, mesna, and dexrazoxane.
In one aspect of the invention, the subject compounds are administered in
combination with radiation therapy. Radiation is commonly delivered internally
(implantation of radioactive material near cancer site) or externally from a machine that
employs photon (x-ray or gamma-ray) or particle radiation. Where the combination
therapy further comprises radiation treatment, the radiation treatment may be conducted at
any suitable time so long as a beneficial effect from the co-action of the combination of
the therapeutic agents and radiation ent is achieved. For e, in appropriate
cases, the cial effect is still achieved when the radiation treatment is temporally
removed from the administration of the therapeutic agents, perhaps by days or even weeks.
It will be appreciated that compounds of the invention can be used in combination
with an immunotherapeutic agent. One form of immunotherapy is the generation of an
active systemic tumor-specific immune se of host origin by administering a e
composition at a site distant from the tumor. Various types of vaccines have been
proposed, including isolated tumor-antigen vaccines and anti-idiotype es. Another
ch is to use tumor cells from the subject to be treated, or a derivative of such cells
(reviewed by Schirrmacher et al., (1995) J. Cancer Res. Clin. Oncol. 12 1:487). In US.
Pat. No. 5,484,596, Hanna Jr., et al. claim a method for treating a resectable carcinoma to
prevent recurrence or metastases, comprising surgically removing the tumor, dispersing
the cells with collagenase, irradiating the cells, and vaccinating the t with at least
three consecutive doses of about 107 cells.
WO 35571
It will be appreciated that the compounds of the invention may advantageously be
used in conjunction with one or more adjunctive therapeutic agents. Examples of suitable
agents for adjunctive therapy include a 5HT1 agonist, such as a triptan (e.g., sumatriptan or
iptan); an adenosine Al t; an EP ligand; an NMDA modulator, such as a
glycine antagonist; a sodium channel blocker (e. g., lamotrigine); a substance P antagonist
(e. g., an NK1 antagonist); a cannabinoid; acetaminophen or phenacetin; a 5—lipoxygenase
inhibitor; a leukotriene receptor antagonist; a DMARD (e.g., methotrexate); gabapentin
and related compounds; a tricyclic antidepressant (e.g., amitryptilline); a neuron ising
antiepileptic drug; a mono-aminergic uptake inhibitor (e.g., venlafaxine); a matrix
metalloproteinase inhibitor; a nitric oxide synthase (NO S) inhibitor, such as an iNOS or an
nNOS inhibitor; an inhibitor of the release, or action, of tumour necrosis factor .alpha.; an
antibody therapy, such as a monoclonal antibody therapy; an antiviral agent, such as a
nucleoside inhibitor (e.g., dine) or an immune system modulator (e.g., interferon);
an opioid analgesic; a local anaesthetic; a stimulant, including caffeine; an Hg-antagonist
(e.g., ranitidine); a proton pump inhibitor (e.g., omeprazole); an antacid (e.g. aluminium or
magnesium hydroxide); an antiflatulent (e.g., icone); a decongestant (e.g.,
phenylephrine, propanolamine, pseudoephedrine, azoline, epinephrine,
naphazoline, xylometazoline, propylhexedrine, or esoxyephedrine); an antitussive
(e.g., codeine, hydrocodone, carmiphen, carbetapentane, or dextramethorphan); a diuretic;
or a sedating or non-sedating antihistamine.
The compounds may also be used in the treatment of a er involving, ng
to or, associated with dysregulation of e deacetylase (HDAC). There are a number
of disorders that have been implicated by or known to be mediated at least in part by
HDAC activity, where HDAC ty is known to play a role in triggering disease onset,
or whose symptoms are known or have been shown to be alleviated by HDAC inhibitors.
Disorders of this type that would be expected to be amenable to treatment with the
compounds of the invention include the following but not limited to: Anti-proliferative
disorders (e.g., cancers); Neurodegenerative diseases including Huntington's Disease,
Polyglutamine disease, Parkinson's Disease, Alzheimer's Disease, Seizures, Striatonigral
degeneration, Progressive supranuclear palsy, Torsion dystonia, Spasmodic ollis and
dyskinesis, Familial tremor, Gilles de la Tourette syndrome, Diffuse Lewy body disease,
Progressive supranuclear palsy, Pick's disease, intracerebral hemorrhage, Primary lateral
sclerosis, Spinal muscular y, Amyotrophic lateral sclerosis, Hypertrophic titial
uropathy, tis pigmentosa, Hereditary optic atrophy, Hereditary spastic
egia, Progressive ataxia and Shy-Drager syndrome; Metabolic diseases including
Type 2 diabetes; Degenerative Diseases of the Eye including Glaucoma, Age-related
macular degeneration, Rubeotic ma; atory es and/or Immune system
ers including Rheumatoid Arthritis (RA), Osteoarthritis, Juvenile chronic arthritis,
Graft versus Host disease, Psoriasis, Asthma, Spondyloarthropathy, Crohn's Disease,
inflammatory bowel disease Colitis Ulcerosa, Alcoholic hepatitis, es, Sjoegrens's
syndrome, Multiple Sclerosis, Ankylosing spondylitis, Membranous glomerulopathy,
Discogenic pain, Systemic Lupus Erythematosus; Disease involving angiogenesis
including cancer, psoriasis, rheumatoid arthritis ; Psychological disorders including bipolar
e, schizophrenia, mania, depression and dementia; Cardiovascular Diseases
including the prevention and treatment of ischemia-related or reperfusion-related vascular
and myocardial tissue damage, heart failure, restenosis and arteriosclerosis; Fibrotic
diseases including liver s, cystic s and angiofibroma; Infectious diseases
including Fungal infections, such as candidiasis or Candida Albicans, Bacterial infections,
Viral infections, such as Herpes Simplex, poliovirus, rhinovirus and coxsackievirus,
Protozoal ions, such as Malaria, Leishmania ion, Trypanosoma brucei
infection, Toxoplasmosis and coccidlosis and Haematopoietic disorders including
thalassemia, anemia and sickle cell anemia.
The compounds ofthe invention can also be used in the treatment of a disorder
involving, relating to or, associated with dysregulation of P13 kinase. P13 kinase activity
has been implicated in or shown to be involved in a variety of disorders. In certain cases,
P13 kinase activity is involved in triggering disease onset, while in others, symptoms are
known or have been shown to be alleviated by inhibitors of P13 kinase activity. Disorders
of this type that would be expected to be amenable to treatment with the compounds of the
invention include but are not limited to cancers, including leukemia, skin cancer, bladder
cancer, breast cancer, uterine cancer, ovarian cancer, prostate cancer, lung cancer, colon
, pancreatic cancer, renal cancer, gastric cancer and brain cancer; restenosis,
sclerosis, bone disorders, arthritis, diabetic retinopathy, psoriasis, benign prostatic
hypertrophy, atherosclerosis, ation, angiogenesis, immunological disorders,
pancreatitis and kidney disease.
In one embodiment, compounds ofthe invention can be used to induce or t
apoptosis, a logical cell death process critical for normal development and
tasis. Alterations of apoptotic pathways bute to the pathogenesis of a variety
of human diseases. nds of the invention, as modulators of apoptosis, will be
usefiJl in the treatment of a variety of human diseases with aberrations in sis
including cancer (particularly, but not limited to, follicular lymphomas, carcinomas with
p53 mutations, e dependent tumors of the breast, prostate and ovary, and
cerous lesions such as familial adenomatous polyposis), Viral ions (including,
but not limited to, herpes Virus, poxvirus, Epstein-Barr Virus, Sindbis Virus and
adenovirus), autoimmune es (including, but not limited to, ic lupus,
erythematosus, immune ed glomerulonephritis, rheumatoid arthritis, psoriasis,
inflammatory bowel diseases, and autoimmune diabetes mellitus), neurodegenerative
disorders (including, but not limited to, Alzheimer's disease, AIDS-related dementia,
Parkinson's disease, amyotrophic l sclerosis, retinitis pigmentosa, spinal muscular
y and llar degeneration), AIDS, myelodysplastic syndromes, aplastic anemia,
ischemic injury associated myocardial infarctions, stroke and reperfusion injury,
arrhythmia, atherosclerosis, toxin-induced or alcohol induced liver diseases, hematological
diseases (including, but not limited to, chronic anemia and aplastic anemia), degenerative
diseases of the musculoskeletal system (including, but not d to, osteoporosis and
arthritis), aspirin-sensitive rhinosinusitis, cystic fibrosis, multiple sclerosis, kidney
diseases, and cancer pain.
In one aspect, the invention provides the use of compounds of the invention for the
treatment and/or prevention of immune response or immune-mediated responses and
diseases, such as the prevention or treatment of rejection following transplantation of
synthetic or organic grafting materials, cells, organs or tissue to replace all or part of the
function of tissues, such as heart, kidney, liver, bone marrow, skin, , vessels, lung,
pancreas, intestine, limb, muscle, nerve tissue, duodenum, small-bowel, pancreatic-islet-
cell, including xeno-transplants, etc; to treat or prevent graft-versus-host disease,
autoimmune diseases, such as rheumatoid arthritis, systemic lupus erythematosus,
thyroiditis, Hashimoto's thyroiditis, multiple sclerosis, myasthenia graVis, type I diabetes
uveitis, juvenile-onset or recent—onset diabetes mellitus, uveitis, Graves e, psoriasis,
atopic dermatitis, Crohn's e, ulcerative colitis, vasculitis, auto—antibody mediated
diseases, aplastic , Evan's syndrome, autoimmune hemolytic anemia, and the like;
and further to treat infectious diseases g aberrant immune response and/or
activation, such as traumatic or pathogen d immune disregulation, including for
example, that which are caused by hepatitis B and C ions, HIV, staphylococcus
aureus infection, Viral encephalitis, sepsis, parasitic diseases wherein damage is induced
by an inflammatory response (e.g., leprosy); and to t or treat circulatory diseases,
such as arteriosclerosis, atherosclerosis, vasculitis, polyarteritis nodosa and myocarditis.
In addition, the present invention may be used to prevent/suppress an immune response
ated with a gene therapy treatment, such as the introduction of foreign genes into
autologous cells and expression of the encoded product. Thus in one embodiment, the
invention relates to a method of treating an immune response disease or disorder or an
immune-mediated response or disorder in a subject in need of treatment comprising
administering to said subject a therapeutically effective amount of a compound of the
invention.
In one aspect, the invention provides the use of nds of the invention in the
treatment of a variety of neurodegenerative diseases, a non-exhaustive list of which
includes: 1. Disorders terized by progressive dementia in the absence of other
prominent neurologic signs, such as Alzheimer's disease; Senile dementia of the
Alzheimer type; and Pick's disease (lobar atrophy); II. Syndromes combining ssive
dementia with other prominent neurologic abnormalities such as: A) mes appearing
mainly in adults (e. g., Huntington's disease, Multiple system atrophy combining dementia
with ataxia and/or manifestations of Parkinson's disease, Progressive supranuclear palsy
(Steel—Richardson—Olszewski), diffuse Lewy body disease, and corticodentatonigral
degeneration; and B) syndromes appearing mainly in en or young adults (e.g.,
vorden-Spatz e and progressive familial myoclonic sy); III. Syndromes
of gradually developing abnormalities of e and movement such as paralysis agitans
(Parkinson's disease), striatonigral degeneration, progressive supranuclear palsy, torsion
dystonia on spasm; dystonia musculorum deformans), spasmodic torticollis and other
dyskinesis, familial tremor, and Gilles de la Tourette syndrome; IV. Syndromes of
progressive ataxia such as cerebellar degenerations (e.g., cerebellar cortical degeneration
and olivopontocerebellar atrophy (OPCA)); and erebellar degeneration (Friedreich's
atazia and related disorders); V. Syndrome of central autonomic s system failure
(Shy-Drager syndrome); VI. Syndromes of muscular weakness and wasting without
sensory s (motorneuron disease such as amyotrophic lateral sclerosis, spinal
muscular atrophy (e.g., infantile spinal muscular atrophy (Werdnig-Hoffman), juvenile
spinal muscular atrophy (Wohlfart—Kugelberg-Welander) and other forms of familial
spinal muscular atrophy), primary l sclerosis, and hereditary spastic paraplegia; VII.
Syndromes combining muscular weakness and wasting with sensory changes essive
neural muscular atrophy; chronic al polyneuropathies) such as peroneal muscular
atrophy (Charcot-Marie-Tooth), hypertrophic interstitial polyneuropathy (Dej erine-Sottas),
and miscellaneous forms of chronic progressive neuropathy; VIII. Syndromes of
ssive visual loss such as pigmentary degeneration of the retina (retinitis
pigmentosa), and hereditary optic atrophy (Leber's disease). Furthermore, compounds of
the invention can be implicated in chromatin remodeling.
The invention encompasses pharmaceutical compositions comprising
pharmaceutically acceptable salts of the compounds of the invention as described above.
The invention also encompasses solvates of the compounds of the invention and
pharmaceutical compositions comprising such es, such as hydrates, methanolates or
ethanolates. The term “solvate” refers to a solid, preferably lline, form of a
compound which includes the presence of solvent molecules within the crystal lattice. A
solvate of a compound comprising a given solvent is typically prepared by llization
of the compound from that solvent. Solvates can include a variety of solvents, including
water, methanol and ethanol. The term "hydrate" refers to a solvate in which the solvent is
water, and includes, but is not limited to, hemihydrate, monohydrate, dihydrate, trihydrate
and the like. The invention fiarther encompasses pharmaceutical compositions comprising
any solid or liquid physical form of the compound of the ion, including crystalline
and crystalline e forms. For example, the nds can be in a crystalline form, in
an amorphous form, and have any le size. The particles may be micronized, or may
be agglomerated, ulate granules, powders, oils, oily sions or any other form of
solid or liquid physical form.
The compounds ofthe invention, and derivatives, fragments, analogs, gs,
pharmaceutically acceptable salts or solvates thereof can be incorporated into
pharmaceutical compositions suitable for administration, together with a pharmaceutically
acceptable carrier or excipient. Such compositions typically comprise a therapeutically
effective amount of any of the nds above, and a pharmaceutically acceptable
carrier. Preferably, the ive amount when treating cancer is an amount effective to
selectively induce al differentiation of suitable neoplastic cells and less than an
amount which causes toxicity in a patient.
Compounds of the invention may be administered by any suitable means,
including, without limitation, parenteral, intravenous, intramuscular, subcutaneous,
implantation, oral, sublingual, buccal, nasal, pulmonary, ermal, topical, vaginal,
, and ucosal administrations or the like. Topical administration can also
involve the use of transdermal administration such as ermal patches or iontophoresis
devices. Pharmaceutical preparations include a solid, semisolid or liquid preparation
(tablet, pellet, troche, capsule, suppository, cream, ointment, aerosol, powder, liquid,
emulsion, suspension, syrup, ion, etc.) containing a compound of the ion as an
active ingredient, which is suitable for selected mode of administration. In one
embodiment, the pharmaceutical compositions are administered orally, and are thus
formulated in a form suitable for oral administration, i.e., as a solid or a liquid preparation.
Suitable solid oral formulations include tablets, capsules, pills, granules, pellets, sachets
and effervescent, powders, and the like. Suitable liquid oral formulations include
solutions, suspensions, dispersions, emulsions, oils and the like. In one embodiment of the
present invention, the composition is ated in a capsule. In accordance with this
embodiment, the compositions of the present ion comprise in addition to the active
compound and the inert carrier or diluent, a hard gelatin capsule.
Any inert excipient that is commonly used as a carrier or diluent may be used in
the formulations of the present invention, such as for example, a gum, a starch, a sugar, a
cellulosic material, an te, or mixtures f. A preferred diluent is
rystalline cellulose. The compositions may fiarther comprise a disintegrating agent
(e. g., croscarmellose sodium) and a lubricant (e.g., magnesium stearate), and may
additionally comprise one or more additives selected from a binder, a buffer, a protease
inhibitor, a surfactant, a solubilizing agent, a plasticizer, an emulsifier, a stabilizing agent,
a viscosity increasing agent, a sweetener, a film forming agent, or any combination
thereof. Furthermore, the compositions of the t invention may be in the form of
controlled e or immediate release formulations.
For liquid ations, ceutically acceptable carriers may be aqueous or
non-aqueous ons, suspensions, emulsions or oils. es of ueous solvents
are propylene glycol, polyethylene glycol, and inj ectable organic esters such as ethyl
oleate. Aqueous carriers include water, alcoholic/aqueous solutions, emulsions or
suspensions, ing saline and buffered media. Examples of oils are those of
petroleum, animal, vegetable, or synthetic origin, for example, peanut oil, soybean oil,
mineral oil, olive oil, sunflower oil, and fish-liver oil. Solutions or suspensions can also
include the following components: a sterile diluent such as water for injection, saline
solution, fixed oils, polyethylene glycols, glycerine, propylene glycol or other synthetic
solvents; antibacterial agents such as benzyl alcohol or methyl parabens; antioxidants such
as ic acid or sodium bisulfite; chelating agents such as ethylenediaminetetraacetic
acid ; s such as acetates, citrates or phosphates, and agents for the
adjustment of ty such as sodium chloride or dextrose. The pH can be adjusted with
acids or bases, such as hydrochloric acid or sodium hydroxide.
In addition, the compositions may further comprise binders (e.g., acacia,
cornstarch, gelatin, carbomer, ethyl cellulose, guar gum, hydroxypropyl cellulose,
hydroxypropyl methyl cellulose, povidone), egrating agents (e.g., arch, potato
starch, alginic acid, silicon dioxide, croscarrnellose sodium, crospovidone, guar gum,
sodium starch glycolate, Primogel), buffers (e. g., tris-HCI., acetate, phosphate) of various
pH and ionic strength, additives such as albumin or gelatin to prevent absorption to
surfaces, ents (e.g., Tween 20, Tween 80, Pluronic F68, bile acid salts), protease
inhibitors, tants (e.g., sodium lauryl sulfate), permeation enhancers, lizing
agents (e.g., ol, polyethylene glycerol, polyethylene glycol), a glidant (e. g., colloidal
silicon dioxide), anti-oxidants (e.g., ic acid, sodium sulflte, butylated
hydroxyanisole), stabilizers (e.g., hydroxypropyl cellulose, ypropylmethyl
cellulose), viscosity increasing agents (e.g., carbomer, colloidal silicon dioxide, ethyl
cellulose, guar gum), sweeteners (e. g., sucrose, aspartame, citric acid), flavoring agents
(e. g., peppermint, methyl salicylate, or orange ng), preservatives (e.g., osal,
benzyl alcohol, parabens), lubricants (e.g., stearic acid, magnesium stearate, polyethylene
glycol, sodium lauryl sulfate), ds (e. g., colloidal silicon dioxide), plasticizers (e.g.,
diethyl ate, triethyl citrate), fiers (e.g., carbomer, hydroxypropyl cellulose,
sodium lauryl sulfate), polymer coatings (e.g., poloxamers or poloxamines), coating and
film forming agents (e.g., ethyl cellulose, tes, polymethacrylates) and/or adjuvants.
In one embodiment, the active compounds are prepared with carriers that will
protect the compound against rapid elimination from the body, such as a controlled release
formulation, including implants and microencapsulated delivery systems. Biodegradable,
biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides,
polyglycolic acid, collagen, polyorthoesters, and polylactic acid. Methods for ation
of such formulations will be apparent to those skilled in the art. The materials can also be
obtained commercially from Alza Corporation and Nova Pharmaceuticals, Inc. Liposomal
suspensions (including liposomes targeted to infected cells with monoclonal antibodies to
viral antigens) can also be used as pharmaceutically able carriers. These can be
prepared according to methods known to those skilled in the art, for example, as described
in US. Pat. No. 4,522,811.
It is especially advantageous to formulate oral compositions in dosage unit form
for ease of administration and uniformity of dosage. Dosage unit form as used herein
refers to physically discrete units suited as unitary dosages for the subject to be treated;
each unit containing a predetermined quantity of active nd ated to produce
the desired eutic effect in association with the required pharmaceutical carrier. The
specification for the dosage unit forms of the invention are dictated by and directly
dependent on the unique characteristics of the active compound and the particular
therapeutic effect to be achieved, and the limitations inherent in the art of compounding
such an active compound for the treatment of individuals.
Formulations of the invention intended for oral administration can include one or
more tion enhancers, including long chain fatty acids or salts thereof, such as
decanoic acid and sodium ate.
In one preferred embodiment, the compound can be formulated in an aqueous
solution for intravenous injection. In one embodiment, lizing agents can be suitably
employed. A particularly preferred lizing agent includes cyclodextrins and modified
cyclodextrins, such as sulfonic acid substituted B-cyclodextrin derivative or salt thereof,
including sulfobutyl derivatized-B—cyclodextrin, such as utylether—7-B-cyclodextrin
which is sold by CyDex, Inc. under the tradename CAPTISOL®.
The pharmaceutical compositions can be included in a container, pack, or
dispenser together with instructions for administration.
Daily administration may be repeated continuously for a period of several days to
several years. Oral treatment may continue for between one week and the life of the
patient. Preferably the administration may take place for five consecutive days after
which time the patient can be evaluated to determine if further administration is required.
The administration can be continuous or intermittent, e.g., treatment for a number of
consecutive days followed by a rest period. The compounds of the present ion may
be administered intravenously on the first day of treatment, with oral administration on the
second day and all consecutive days thereafter.
The preparation ofpharmaceutical itions that contain an active component
is well understood in the art, for example, by mixing, granulating, or tablet-forming
processes. The active therapeutic ingredient is often mixed with excipients that are
pharmaceutically acceptable and compatible with the active ingredient. For oral
stration, the active agents are mixed with additives customary for this purpose, such
as vehicles, stabilizers, or inert ts, and converted by customary methods into le
forms for stration, such as tablets, coated tablets, hard or soft gelatin capsules,
aqueous, alcoholic or oily solutions and the like as detailed above.
WO 35571
The amount of the compound stered to the patient is less than an amount
that would cause toxicity in the patient. In n embodiments, the amount of the
compound that is administered to the patient is less than the amount that causes a
concentration of the compound in the patient's plasma to equal or exceed the toxic level of
the nd. Preferably, the concentration of the compound in the patient's plasma is
maintained at about 10 nM. In one embodiment, the concentration of the compound in the
patient's plasma is maintained at about 25 nM. In one embodiment, the tration of
the compound in the patient's plasma is maintained at about 50 nM. In one embodiment,
the concentration of the nd in the patient's plasma is maintained at about 100 nM.
In one embodiment, the concentration of the nd in the patient's plasma is
maintained at about 500 nM. In one embodiment, the concentration of the compound in
the patient's plasma is maintained at about 1000 nM. In one embodiment, the
tration of the compound in the patient's plasma is maintained at about 2500 nM. In
one embodiment, the concentration of the compound in the patient's plasma is maintained
at about 5000 nM. The optimal amount ofthe compound that should be administered to
the patient in the practice of the present invention will depend on the particular compound
used and the type of cancer being treated.
DEFINITIONS
Listed below are definitions of various terms used to describe this invention. These
definitions apply to the terms as they are used throughout this specification and claims,
unless otherwise limited in specific instances, either individually or as part of a larger
group.
The term "acyl" refers to hydrogen, alkyl, partially saturated or fully saturated
cycloalkyl, partially saturated or fully saturated heterocycle, aryl, and heteroaryl
substituted carbonyl groups. For example, acyl includes groups such as (C1-C6)alkanoyl
(e.g., formyl, acetyl, propionyl, butyryl, l, l, t-butylacetyl, etc.), (C3-
C6)cycloalkylcarbonyl (e. g., ropylcarbonyl, cyclobutylcarbonyl,
cyclopentylcarbonyl, cyclohexylcarbonyl, etc.), heterocyclic carbonyl (e.g.,
idinylcarbonyl, pyrrolid-Z-one-S-carbonyl, piperidinylcarbonyl, piperazinylcarbonyl,
tetrahydrofuranylcarbonyl, etc.), aroyl (e.g., benzoyl) and heteroaroyl (e. g., thiophenyl—Z—
yl, thiophenylcarbonyl, furanyl-Z-carbonyl, furanylcarbonyl, lH-pyrroyl-Z-
carbonyl, lH-pyrroylcarbonyl, benzo[b]thiophenylcarbonyl, etc.). In addition, the
alkyl, cycloalkyl, heterocycle, aryl and heteroaryl portion of the acyl group may be any
one of the groups described in the respective definitions. When indicated as being
nally substituted", the acyl group may be unsubstituted or ally substituted
with one or more substituents (typically, one to three substituents) independently selected
from the group of substituents listed below in the definition for "substituted" or the alkyl,
cycloalkyl, heterocycle, aryl and heteroaryl n of the acyl group may be substituted as
described above in the preferred and more preferred list of substituents, respectively.
The term "alkyl" embraces linear or branched radicals having one to about twenty
carbon atoms or, ably, one to about twelve carbon atoms. More preferred alkyl
radicals are "lower alkyl" radicals having one to about ten carbon atoms. Most preferred
are lower alkyl radicals having one to about eight carbon atoms. Examples of such radicals
include methyl, ethyl, n—propyl, isopropyl, n—butyl, isobutyl, sec-butyl, tert-butyl, pentyl,
iso-amyl, hexyl and the like.
The term "alkenyl" embraces linear or branched radicals having at least one
carbon-carbon double bond oftwo to about twenty carbon atoms or, ably, two to
about twelve carbon atoms. More preferred l radicals are "lower l" radicals
having two to about ten carbon atoms and more preferably about two to about eight carbon
atoms. Examples of alkenyl ls include ethenyl, allyl, propenyl, butenyl and 4-
methylbutenyl. The terms yl", and "lower alkenyl", embrace radicals having "cis"
and "trans" orientations, or alternatively, "E" and "Z" orientations.
The term "alkynyl" embraces linear or branched radicals having at least one
carbon-carbon triple bond of two to about twenty carbon atoms or, preferably, two to
about twelve carbon atoms. More preferred alkynyl radicals are "lower alkynyl" radicals
having two to about ten carbon atoms and more preferably about two to about eight carbon
atoms. Examples of alkynyl radicals include propargyl, 1—propynyl, 2—propyny1, l—butyne,
2-butynyl and l-pentynyl.
The term "aryl", alone or in combination, means a carbocyclic aromatic system
containing one, two or three rings wherein such rings may be attached together in a
pendent manner or may be fused. The term "aryl" embraces aromatic ls such as
phenyl, naphthyl, tetrahydronaphthyl, indane and biphenyl.
The terms “heterocyclyl”, “heterocycle”, “heterocyclic” or “heterocyclo” embrace
saturated, partially unsaturated and unsaturated heteroatom-containing ring-shaped
radicals, which can also be called "heterocyclyl", "heterocycloalkenyl" and "heteroaryl"
correspondingly, where the heteroatoms may be ed from nitrogen, sulfur and
oxygen. Examples of saturated cyclyl radicals include saturated 3 to 6-membered
heteromonocyclic group containing 1 to 4 nitrogen atoms (e. g. pyrrolidinyl,
imidazolidinyl, piperidino, piperazinyl, etc.) ; saturated 3 to 6-membered heteromonocyclic
group containing 1 to 2 oxygen atoms and l to 3 nitrogen atoms (e. g. morpholinyl, etc.);
saturated 3 to 6-membered heteromonocyclic group containing 1 to 2 sulfur atoms and l to
3 en atoms (e.g., lidinyl, etc.). Examples of partially unsaturated cyclyl
radicals include dihydrothiophene, dihydropyran, dihydrofuran and othiazole.
Heterocyclyl radicals may include a pentavalent nitrogen, such as in tetrazolium and
pyridinium radicals. The term "heterocycle" also embraces radicals Where heterocyclyl
radicals are fused with aryl or cycloalkyl radicals. Examples of such fused bicyclic
radicals include benzofuran, benzothiophene, and the like.
The term "heteroaryl" embraces unsaturated heterocyclyl radicals. Examples of
heteroaryl radicals include unsaturated 3 to 6—membered, preferably 5 or 6-membered,
heteromonocyclic group containing 1 to 4 nitrogen atoms, for example, pyrrolyl,
pyrrolinyl, imidazolyl, pyrazolyl, pyridyl, pyrimidyl, pyrazinyl, pyridazinyl, triazolyl (e.g.,
4H-l,2,4—triazolyl, lH—l,2,3-triazolyl, 2H-l,2,3-triazolyl, etc.) tetrazolyl (e. g. lH—
tetrazolyl, 2H—tetrazolyl, etc.), etc.; unsaturated condensed heterocyclyl group containing 1
to 5 nitrogen atoms, for example, indolyl, olyl, zinyl, benzimidazolyl,
quinolyl, isoquinolyl, indazolyl, benzotriazolyl, tetrazolopyridazinyl (e.g., tetrazolo[l ,5-
b]pyridazinyl, etc), etc.; unsaturated 3 to 6-membered, ably 5- or 6-membered,
monocyclic group containing an oxygen atom, for example, pyranyl, furyl, etc.;
unsaturated 3 to ered heteromonocyclic group containing a sulfur atom, for
example, thienyl, etc. ; unsaturated 3 to ered, preferably 5- or 6-membered,
heteromonocyclic group containing 1 to 2 oxygen atoms and l to 3 nitrogen atoms, for
e, yl, isoxazolyl, oxadiazolyl (e.g., 1,2,4-oxadiazolyl, oxadiazolyl,
1,2,5—oxadiazolyl, etc.) etc. ; unsaturated condensed heterocyclyl group containing 1 to 2
oxygen atoms and l to 3 nitrogen atoms (e.g. benzoxazolyl, benzoxadiazolyl, etc.);
unsaturated 3 to 6-membered, preferably 5- or ered, heteromonocyclic group
containing 1 to 2 sulfur atoms and l to 3 nitrogen atoms, for example, thiazolyl,
thiadiazolyl (e.g., 1,2,4- thiadiazolyl, l,3,4-thiadiazolyl, l,2,5-thiadiazolyl, etc.) etc.;
unsaturated condensed heterocyclyl group ning 1 to 2 sulfur atoms and l to 3
nitrogen atoms (e.g., benzothiazolyl, benzothiadiazolyl, etc.) and the like.
The term "heterocycloalkyl" embraces heterocyclo-substituted alkyl radicals. More
preferred heterocycloalkyl radicals are "lower heterocycloalkyl" radicals having one to six
carbon atoms in the heterocyclo radicals.
The term "substituted” refers to the ement of one or more hydrogen radicals
in a given structure with the radical of a specified substituent including, but not limited to:
halo, alkyl, alkenyl, alkynyl, aryl, cyclyl, thiol, alkylthio, arylthio, alkylthioalkyl,
arylthioalkyl, alkylsulfonyl, ulfonylalkyl, arylsulfonylalkyl, alkoxy, aryloxy,
aralkoxy, aminocarbonyl, alkylaminocarbonyl, arylaminocarbonyl, alkoxycarbonyl,
aryloxycarbonyl, haloalkyl, amino, trifluoromethyl, cyano, nitro, alkylamino, arylamino,
alkylaminoalkyl, arylaminoalkyl, aminoalkylamino, hydroxy, alkoxyalkyl, carboxyalkyl,
alkoxycarbonylalkyl, aminocarbonylalkyl, acyl, aralkoxycarbonyl, carboxylic acid,
sulfonic acid, sulfonyl, phosphonic acid, aryl, heteroaryl, heterocyclic, and aliphatic. It is
understood that the substituent may be further tuted.
For simplicity, chemical moieties are defined and referred to hout can be
univalent chemical moieties (e.g., alkyl, aryl, etc.) or multivalent moieties under the
appropriate structural circumstances clear to those skilled in the art. For example, an
"alkyl" moiety can be referred to a monovalent radical (e.g., 2-), or in other
instances, a bivalent g moiety can be "alkyl," in which case those d in the art
will tand the alkyl to be a divalent radical (e.g., —CH2-CH2-), which is equivalent to
the term "alkylene." Similarly, in circumstances in which divalent moieties are required
and are stated as being “alkoxy”, “alkylamino”, “aryloxy”, “alkylthio”, "aryl",
“heteroaryl”, “heterocyclic”, “alkyl” “alkenyl”, “alkynyl”, “aliphatic”, or “cycloalkyl”,
those skilled in the art will understand that the terms alkoxy”, “alkylamino”, “aryloxy”,
“alkylthio”, "aryl", “heteroaryl”, “heterocyclic”, “alkyl”, “alkenyl”, “alkynyl”,
“aliphatic”, or “cycloalkyl” refer to the corresponding divalent moiety.
The terms "halogen" or “halo” as used herein, refers to an atom selected from
fluorine, chlorine, bromine and iodine.
As used herein, the term “aberrant proliferation” refers to abnormal cell growth.
The phrase "adjunctive y" encompasses treatment of a subject with agents
that reduce or avoid side effects associated with the combination therapy of the present
invention, including, but not limited to, those agents, for example, that reduce the toxic
effect of ncer drugs, e.g., bone resorption inhibitors, cardioprotective agents; t
or reduce the incidence ofnausea and vomiting associated with chemotherapy,
radiotherapy or ion; or reduce the incidence of infection associated with the
administration of myelosuppressive anticancer drugs.
The term “angiogenesis,” as used herein, refers to the ion of blood vessels.
Specifically, angiogenesis is a multi-step process in which endothelial cells focally
WO 35571
degrade and invade through their own basement membrane, migrate through interstitial
stroma toward an angiogenic stimulus, proliferate proximal to the migrating tip, organize
into blood vessels, and reattach to newly synthesized basement membrane (see Folkman er
al., Adv. Cancer Res, Vol. 43, pp. 175-203 (1985)). Anti-angiogenic agents interfere with
this process. Examples of agents that interfere with several of these steps include
thrombospondin-l , tatin, endostatin, interferon alpha and compounds such as matrix
metalloproteinase (MMP) inhibitors that block the actions of enzymes that clear and create
paths for newly forming blood vessels to follow; compounds, such as .alpha.v.beta.3
inhibitors, that interfere with molecules that blood vessel cells use to bridge n a
parent blood vessel and a tumor; , such as specific COX-2 inhibitors, that t
the growth of cells that form new blood vessels; and protein-based compounds that
simultaneously interfere with several of these targets.
The term “apoptosis” as used herein refers to programmed cell death as ed
by the nuclei in normally functioning human and animal cells when age or state of cell
health and condition es. An “apoptosis inducing agent” triggers the process of
mmed cell death.
The term “cancer” as used herein denotes a class of es or disorders
characterized by uncontrolled division of cells and the ability of these cells to invade other
tissues, either by direct growth into adjacent tissue through invasion or by implantation
into distant sites by metastasis.
The terms “compound” and “compound of the invention”, as used herein, refer to
compounds of Formula I and pharmaceutically acceptable salts thereof. The compounds
of the invention can be obtained in ent forms, including crystalline and amorphous
forms. The nds can also occur as solvates, for example, hydrates, or solvates of an
organic solvent, preferably a pharmaceutically acceptable solvent. The compounds can
also occur in multiple lline, or polymorphic, forms. The compounds of the invention
further include pharmaceutically acceptable gs and esters of the compounds of
Formula I.
The term "device" refers to any appliance, usually mechanical or electrical,
designed to perform a particular function.
As used herein, the term “dysplasia” refers to abnormal cell growth, and typically
refers to the earliest form of pre—cancerous lesion recognizable in a biopsy by a
pathologist.
As used herein, the term “effective amount of the subject compounds,” with
respect to the subject method of treatment, refers to an amount of the subject compound
which, when delivered as part of desired dose regimen, brings about, e.g., a change in the
rate of cell eration and/or state of differentiation and/or rate of survival of a cell to
ally acceptable standards. This amount may further relieve to some extent one or
more of the symptoms of a neoplasia er, including, but is not limited to: 1) reduction
in the number of cancer cells; 2) reduction in tumor size; 3) inhibition (i.e., slowing to
some extent, preferably stopping) of cancer cell infiltration into peripheral organs; 4)
inhibition (i.e., slowing to some extent, preferably stopping) of tumor asis; 5)
inhibition, to some extent, of tumor growth; 6) relieving or ng to some extent one or
more of the symptoms associated with the disorder; and/or 7) relieving or reducing the
side effects associated with the administration of anticancer .
The term “hyperplasia,” as used , refers to excessive cell division or growth.
The phrase an "immunotherapeutic agen " refers to agents used to transfer the
immunity of an immune donor, e.g., another person or an animal, to a host by inoculation.
The term embraces the use of serum or gamma globulin containing performed antibodies
produced by another dual or an animal; nonspecific systemic stimulation; adjuvants;
active specific immunotherapy; and adoptive immunotherapy. Adoptive immunotherapy
refers to the treatment of a disease by therapy or agents that include host inoculation of
sensitized lymphocytes, transfer factor, immune RNA, or antibodies in serum or gamma
globulin.
The term "inhibition," in the context of neoplasia, tumor growth or tumor cell
growth, may be ed by delayed appearance ofprimary or secondary tumors, slowed
pment ary or secondary tumors, decreased occurrence of primary or
secondary tumors, slowed or decreased ty of secondary effects of disease, arrested
tumor growth and regression of tumors, among others. In the extreme, complete inhibition,
is ed to herein as prevention or chemoprevention.
The term “metastasis,” as used herein, refers to the migration of cancer cells from
the original tumor site h the blood and lymph vessels to produce cancers in other
tissues. Metastasis also is the term used for a ary cancer growing at a distant site.
The term “neoplasm,” as used herein, refers to an abnormal mass of tissue that
results from excessive cell division. Neoplasms may be benign (not cancerous), or
malignant (cancerous) and may also be called a tumor. The term “neoplasia” is the
pathological process that results in tumor formation.
As used herein, the term “pre-cancerous” refers to a condition that is not
malignant, but is likely to become malignant if left ted.
The term “proliferation” refers to cells undergoing mitosis.
The phrase "P13 kinase related disease or disorder" refers to a disease or disorder
characterized by inappropriate phosphoinositide-3 -kinase activity or over-activity of the
phosphoinositide-3—kinase. opriate activity refers to either: (i) P13 kinase expression
in cells which normally do not express PI3 kinase; (ii) increased P13 kinase expression
leading to unwanted cell proliferation, differentiation and/or growth; or, (iii) decreased P13
kinase expression leading to unwanted ions in cell proliferation, differentiation
and/or growth. Over—activity of PI3 kinase refers to either amplification of the gene
encoding a ular P13 kinase or tion of a level of P13 kinase ty which can
correlate with a cell proliferation, entiation and/or growth disorder (that is, as the
level of the P13 kinase increases, the severity of one or more of the ms of the
cellular disorder increases).
The phrase a "radio therapeutic agent" refers to the use of electromagnetic or
particulate radiation in the treatment of neoplasia.
The term “recurrence” as used herein refers to the return of cancer after a period of
remission. This may be due to incomplete removal of cells from the initial cancer and
may occur y (the same site of initial cancer), regionally (in Vicinity of initial cancer,
possibly in the lymph nodes or tissue), and/or ly as a result of metastasis.
The term "treatment" refers to any process, action, application, therapy, or the like,
wherein a mammal, including a human being, is subject to medical aid with the object of
improving the 's condition, directly or indirectly.
The term "vaccine" includes agents that induce the patient's immune system to
mount an immune response against the tumor by attacking cells that express tumor
associated antigens (Teas).
As used herein, the term "pharmaceutically acceptable salt" refers to those salts
which are, within the scope of sound medical judgment, suitable for use in contact with
the tissues of humans and lower animals without undue toxicity, tion, allergic
se and the like, and are commensurate with a reasonable benefit/risk ratio.
Pharmaceutically acceptable salts are well known in the art. For e, S. M. Berge, et
al. describes pharmaceutically acceptable salts in detail in 1. Pharmaceutical Sciences, 66:
1-19 (1977). The salts can be prepared in situ during the final isolation and purification of
the compounds of the invention, or separately by reacting the free base function with a
suitable organic acid or inorganic acid. Examples ofpharmaceutically acceptable
nontoxic acid addition salts include, but are not limited to, salts of an amino group formed
with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid,
sulfuric acid and perchloric acid or with organic acids such as acetic acid, maleic acid,
tartaric acid, citric acid, succinic acid lactobionic acid or malonic acid or by using other
methods used in the art such as ion exchange. Other pharmaceutically acceptable salts
include, but are not d to, adipate, alginate, ascorbate, aspartate, benzenesulfonate,
benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate,
cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, te,
glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate,
hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, e, lauryl sulfate,
malate, maleate, te, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate,
oleate, oxalate, palmitate, pamoate, pectinate, fate, 3-phenylpropionate, phosphate,
picrate, pivalate, propionate, stearate, ate, sulfate, tartrate, thiocyanate, p-
toluenesulfonate, undecanoate, valerate salts, and the like. Representative alkali or
ne earth metal salts include , lithium, potassium, calcium, magnesium, and
the like. Further ceutically acceptable salts include, when appropriate, nontoxic
ammonium, quaternary ammonium, and amine cations formed using counterions such as
halide, hydroxide, carboxylate, e, phosphate, nitrate, alkyl sulfonate having from 1 to
6 carbon atoms, sulfonate and aryl sulfonate. Certain salts such as the sodium, potassium
and choline base salts as well as acidic salts such as sulfate and methanesulfonate salts
have been found to improve the solubility of compounds of Formula I in ceutically
able aqueous media. In one embodiment, the pharmaceutically able salt of
Compound 1 is the choline salt. Preferred salts of Compound 1 include the sodium salt and
the potassium salt. Other preferred salts include the e and methanesulfonate salts.
As used herein, the term "pharmaceutically acceptable ester" refers to esters which
hydrolyze in vivo and include those that break down readily in the human body to leave
the parent compound or a salt thereof. Suitable ester groups include, for example, those
derived from pharmaceutically acceptable aliphatic carboxylic acids, particularly alkanoic,
ic, cycloalkanoic and alkanedioic acids, in which each alkyl or l moiety
advantageously has not more than 6 carbon atoms. Examples of particular esters include,
but are not limited to, formates, acetates, propionates, butyrates, acrylates and
ethylsuccinates.
The term “pharmaceutically acceptable prodrugs” as used herein refers to those
prodrugs of the compounds ofthe present invention which are, within the scope of sound
medical judgment, suitable for use in contact with the tissues of humans and lower animals
with undue toxicity, irritation, ic response, and the like, commensurate with a
reasonable benefit/risk ratio, and effective for their intended use, as well as the
zwitterionic forms, where possible, of the nds of the t invention. "Prodrug",
as used herein means a nd which is tible in vivo by metabolic means (e.g.
by hydrolysis) to a compound of the invention. Various forms ofprodrugs are known in
the art, for example, as sed in Bundgaard, (ed.), Design of Prodrugs, Elsevier
(1985); Widder, et al. (ed.), Methods in Enzymology, Vol. 4, Academic Press (1985);
Krogsgaard-Larsen, et al., (ed). "Design and Application of Prodrugs, Textbook of Drug
Design and pment, Chapter 5, 1 13-191 (1991); Bundgaard, et al., Journal ofDrug
Deliver Reviews, 8: 1-38(1992); Bundgaard, J. ofPharmaceutical Sciences, 77:285 et seq.
(1988); Higuchi and Stella (eds.) Prodrugs as Novel Drug Delivery Systems, American
Chemical Society (1975); and Bernard Testa & Joachim Mayer, “Hydrolysis In Drug And
g Metabolism: Chemistry, mistry And Enzymology, John Wiley and Sons,
Ltd. (2002).
As used , "pharmaceutically acceptable carrier" is intended to include any
and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic
and tion delaying agents, and the like, compatible with pharmaceutical
stration, such as sterile pyrogen-free water. Suitable carriers are described in the
most recent edition of Remington's Pharmaceutical Sciences, a standard reference text in
the field, which is incorporated herein by reference. Preferred es of such carriers
or diluents include, but are not limited to, water, saline, Ringer's solutions, dextrose
solution, and 5% human serum albumin. Liposomes and non—aqueous vehicles such as
fixed oils may also be used. The use of such media and agents for pharmaceutically active
substances is well known in the art. Except insofar as any conventional media or agent is
incompatible with the active compound, use f in the compositions is contemplated.
Supplementary active compounds can also be incorporated into the compositions.
As used herein, the term “pre-cancerous” refers to a ion that is not
malignant, but is likely to become malignant if left untreated.
The term “subject” as used herein refers to an animal. Preferably the animal is a
mammal. More preferably the mammal is a human. A subject also refers to, for example,
dogs, cats, horses, cows, pigs, guinea pigs, fish, birds and the like.
2012/031361
The compounds of this invention may be modified by ing appropriate
functionalities to enhance selective biological ties. Such modifications are known in
the art and may include those which increase biological penetration into a given biological
system (e.g., blood, lymphatic system, central nervous system), increase oral availability,
increase solubility to allow administration by injection, alter metabolism and alter rate of
excretion.
The synthesized nds can be ted from a reaction mixture and further
purified by a method such as column chromatography, high pressure liquid
chromatography, or recrystallization. As can be appreciated by the skilled artisan, further
methods of synthesizing the compounds of the formulae herein will be evident to those of
ordinary skill in the art. Additionally, the various synthetic steps may be performed in an
alternate sequence or order to give the d compounds. Synthetic chemistry
transformations and protecting group methodologies (protection and deprotection) usefiJl
in synthesizing the compounds described herein are known in the art and include, for
example, those such as bed in R. Larock, Comprehensive Organic Transformations,
VCH Publishers (1989); T.W. Greene and P.G.M. Wuts, Protective Groups in c
Synthesis, 2d. Ed., John Wiley and Sons (1991); L. Fieser and M. Fieser, Fieser and
Fieser's Reagents for Organic Synthesis, John Wiley and Sons (1994); and L. Paquette,
ed., opedia of Reagents for Organic Synthesis, John Wiley and Sons (1995), and
subsequent editions thereof.
Pharmaceutical Compositions
The pharmaceutical compositions of the present invention comprise a
therapeutically ive amount of a compound of the invention formulated together with
one or more pharmaceutically acceptable carriers or excipients.
Preferably, the pharmaceutically acceptable carrier or excipient is a non-toxic, inert
solid, semi—solid or liquid filler, diluent, encapsulating material or formulation auxiliary of
any type. Some examples of materials which can serve as pharmaceutically acceptable
carriers are sugars such as lactose, glucose and sucrose; cyclodextrins such as alpha- (0.),
beta- ([3) and gamma- (y) extrins; starches such as corn starch and potato starch;
cellulose and its derivatives such as sodium carboxymethyl cellulose, ethyl cellulose and
cellulose acetate; powdered tragacanth; malt; n; talc; excipients such as cocoa butter
and suppository waxes; oils such as peanut oil, cottonseed oil, er oil, sesame oil,
olive oil, corn oil and soybean oil; glycols such as propylene glycol; esters such as ethyl
WO 35571
oleate and ethyl e; agar; buffering agents such as magnesium hydroxide and
aluminum hydroxide; alginic acid; pyrogen-free water; isotonic saline; Ringer's solution;
ethyl alcohol, and phosphate buffer solutions, as well as other xic compatible
lubricants such as sodium lauryl e and magnesium stearate, as well as coloring
agents, ing agents, g agents, ning, flavoring and perfuming agents,
preservatives and antioxidants can also be present in the composition, according to the
judgment of the formulator.
The pharmaceutical compositions of this invention may be administered orally,
parenterally, by inhalation spray, topically, rectally, nasally, buccally, vaginally or via an
ted reservoir, preferably by oral stration or administration by injection. The
pharmaceutical compositions of this invention may contain any conventional non—toxic
pharmaceutically-acceptable carriers, adjuvants or vehicles. In some cases, the pH of the
formulation may be adjusted with pharmaceutically acceptable acids, bases or buffers to
e the stability of the formulated nd or its delivery form. The term parenteral
as used herein includes subcutaneous, utaneous, intravenous, intramuscular,
intraarticular, intraarterial, intrasynovial, intrastemal, intrathecal, intralesional and
intracranial injection or infusion techniques.
Liquid dosage forms for oral administration include pharmaceutically acceptable
emulsions, microemulsions, solutions, suspensions, syrups and s. In addition to the
active compounds, the liquid dosage forms may contain inert diluents commonly used in
the art such as, for example, water or other solvents, solubilizing agents and emulsifiers
such as ethyl alcohol, isopropyl l, ethyl carbonate, ethyl acetate, benzyl alcohol,
benzyl benzoate, propylene glycol, l,3-butylene glycol, dimethylformamide, oils (in
particular, cottonseed, groundnut, corn, germ, olive, castor, and sesame oils), glycerol,
ydrofurfuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and
mixtures thereof. Besides inert diluents, the oral compositions can also include adjuvants
such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, and
perfuming agents.
Inj ectable preparations, for example, sterile inj ectable aqueous or oleaginous
suspensions, may be formulated according to the known art using suitable dispersing or
wetting agents and suspending agents. The e injectable preparation may also be a
sterile inj ectable solution, suspension or emulsion in a nontoxic erally acceptable
diluent or solvent, for example, as a solution in l,3-butanediol. Among the able
vehicles and solvents that may be employed are water, Ringer's solution, U.S.P. and
isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally
employed as a solvent or suspending medium. For this purpose any bland fixed oil can be
employed including tic mono- or diglycerides. In addition, fatty acids such as oleic
acid are used in the preparation of inj es.
The inj ectable formulations can be sterilized, for example, by filtration through a
bacterial-retaining filter, or by incorporating izing agents in the form of sterile solid
compositions which can be dissolved or dispersed in sterile water or other sterile injectable
medium prior to use.
In order to prolong the effect of a drug, it is often desirable to slow the absorption
of the drug from subcutaneous or intramuscular injection. This may be accomplished by
the use of a liquid suspension of crystalline or amorphous material with poor water
solubility. The rate of absorption of the drug then depends upon its rate of dissolution,
which, in turn, may depend upon crystal size and crystalline form. Alternatively, delayed
absorption of a parenterally administered drug form is accomplished by ving or
suspending the drug in an oil vehicle. Injectable depot forms are made by forming
microencapsule es of the drug in biodegradable polymers such as polylactide-
ycolide. Depending upon the ratio of drug to polymer and the nature of the
particular polymer employed, the rate of drug release can be lled. Examples of
other biodegradable polymers include poly(orthoesters) and poly(anhydrides). Depot
inj ectable formulations are also prepared by entrapping the drug in liposomes or
mulsions that are compatible with body tissues.
Compositions for rectal or vaginal administration are preferably suppositories
which can be prepared by mixing the compounds of this invention with suitable non-
irritating excipients or carriers such as cocoa butter, polyethylene glycol or a suppository
wax which are solid at ambient temperature but liquid at body temperature and therefore
melt in the rectum or vaginal cavity and release the active compound.
Solid dosage forms for oral administration include capsules, tablets, pills, s,
and granules. In such solid dosage forms, the active compound is mixed with at least one
inert, pharmaceutically acceptable excipient or carrier such as sodium citrate or dicalcium
ate and/or: a) fillers or extenders such as starches, lactose, sucrose, e,
mannitol, and silicic acid; b) s such as, for example, carboxymethylcellulose,
alginates, gelatin, nylpyrrolidinone, sucrose, and acacia; c) humectants such as
glycerol; (1) disintegrating agents such as agar-agar, calcium ate, potato or a
starch, alginic acid, certain silicates, and sodium carbonate; e) solution retarding agents
WO 35571
such as paraffin; f) tion accelerators such as quaternary ammonium nds; g)
wetting agents such as, for example, cetyl alcohol and ol earate; h)
absorbents such as kaolin and bentonite clay; and i) lubricants such as talc, calcium
stearate, magnesium te, solid polyethylene glycols, sodium lauryl sulfate, and
mixtures thereof. In the case of capsules, tablets and pills, the dosage form may also
comprise buffering agents.
Solid compositions of a similar type may also be employed as fillers in soft and
hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high
molecular weight polyethylene glycols and the like.
The solid dosage forms of tablets, s, capsules, pills, and granules can be
prepared with coatings and shells such as enteric coatings and other gs well known
in the pharmaceutical formulating art. They may optionally contain opacifying agents and
can also be of a composition that they release the active ingredient(s) only, or
preferentially, in a certain part of the intestinal tract, ally, in a delayed manner.
Examples of embedding compositions that can be used include polymeric substances and
waxes.
Dosage forms for topical or ermal administration of a compound of this
invention include ointments, pastes, creams, lotions, gels, powders, solutions, sprays,
inhalants or patches. The active component is admixed under sterile conditions with a
aceutically acceptable carrier and any needed preservatives or buffers as may be
required. Ophthalmic formulation, ear drops, eye ointments, powders and solutions are
also contemplated as being within the scope of this invention.
The ointments, pastes, creams and gels may contain, in addition to an active
compound of this invention, excipients such as animal and vegetable fats, oils, waxes,
paraffins, , tragacanth, cellulose derivatives, polyethylene glycols, silicones,
bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
s and sprays can contain, in addition to the compounds of this invention,
excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and
polyamide powder, or mixtures of these substances. Sprays can onally n
customary propellants such as chlorofluorohydrocarbons.
Transdermal patches have the added advantage of providing controlled delivery of
a compound to the body. Such dosage forms can be made by dissolving or dispensing the
compound in the proper medium. Absorption enhancers can also be used to increase the
2012/031361
flux of the compound across the skin. The rate can be controlled by either ing a rate
controlling membrane or by dispersing the compound in a polymer matrix or gel.
For ary delivery, a therapeutic composition of the invention is formulated
and administered to the patient in solid or liquid particulate form by direct administration
(e. g., inhalation into the respiratory system). Solid or liquid particulate forms of the active
nd prepared for cing the present invention include particles of respirable
size: that is, les of a size sufficiently small to pass h the mouth and larynx
upon inhalation and into the bronchi and alveoli of the lungs. Delivery of aerosolized
therapeutics, particularly aerosolized antibiotics, is known in the art (see, for e US.
Pat. No. 5,767,068 to VanDevanter et (1]., US. Pat. No. 5,508,269 to Smith et al., and WO
98/43650 by Montgomery, all of which are incorporated herein by reference). A
discussion of ary delivery of antibiotics is also found in US. Pat. No. 6,014,969,
incorporated herein by reference.
By a "therapeutically effective amount" of a compound of the invention is meant
an amount of the compound which confers a therapeutic effect on the treated subject, at a
reasonable benefit/risk ratio applicable to any medical treatment. The therapeutic effect
may be objective (i.e., measurable by some test or marker) or tive (i.e., subject gives
an indication of or feels an ). An effective amount of the compound described above
may range from about 0.1 mg/Kg to about 500 mg/Kg, preferably from about 1 to about
50 mg/Kg. Effective doses will also vary depending on route of administration, as well as
the possibility of co-usage with other agents. It will be understood, however, that the total
daily usage of the compounds and compositions of the present invention will be decided
by the attending ian within the scope of sound medical judgment. The specific
therapeutically effective dose level for any particular patient will depend upon a variety of
factors including the disorder being treated and the severity of the disorder; the activity of
the c compound employed; the specific composition employed; the age, body
weight, general health, sex and diet of the patient; the time of administration, route of
administration, and rate of excretion of the specific compound ed; the duration of
the treatment; drugs used in combination or contemporaneously with the specific
compound employed; and like factors well known in the medical arts.
The total daily dose of the compounds of this invention administered to a human or
other animal in single or in divided doses can be in amounts, for example, from 0.01 to 50
mg/kg body weight or more usually from 0.1 to 25 mg/kg body . Single dose
compositions may contain such amounts or submultiples thereof to make up the daily
dose. In general, treatment regimens according to the present invention comprise
administration to a patient in need of such treatment from about 10 mg to about 1000 mg
of the compound(s) of this invention per day in single or multiple doses.
The compounds ofthe formulae described herein can, for example, be
administered by injection, intravenously, intraarterially, subdermally, intraperitoneally,
uscularly, or subcutaneously; or orally, buccally, nasally, transmucosally, topically,
in an ophthalmic preparation, or by inhalation, with a dosage ranging from about 0.1 to
about 500 mg/kg of body weight, alternatively dosages between 1 mg and 1000 mg/dose,
every 4 to 120 hours, or according to the requirements of the particular drug. The methods
herein contemplate administration of an effective amount of nd or nd
composition to achieve the desired or stated . Typically, the ceutical
compositions of this invention will be administered from about 1 to about 6 times per day
or alternatively, as a continuous infusion. Such administration can be used as a chronic or
acute therapy. The amount of active ingredient that may be combined with
pharmaceutically excipients or carriers to e a single dosage form will vary
ing upon the host treated and the particular mode of administration. A typical
preparation will contain from about 5% to about 95% active compound (w/w).
Alternatively, such preparations may contain from about 20% to about 80% active
compound.
Lower or higher doses than those recited above may be required. c dosage
and ent regimens for any particular patient will depend upon a variety of factors,
including the activity of the specific compound employed, the age, body weight, general
health status, sex, diet, time of administration, rate of excretion, drug combination, the
severity and course of the disease, ion or symptoms, the patient’s disposition to the
disease, condition or symptoms, and the nt of the treating physician.
Upon improvement of a patient’s condition, a nance dose of a compound,
composition or combination of this invention may be administered, if ary.
Subsequently, the dosage or frequency of administration, or both, may be reduced, as a
function of the symptoms, to a level at which the improved condition is retained when the
symptoms have been alleviated to the desired level. Patients may, however, require
intermittent ent on a long-term basis upon any recurrence of disease symptoms.
EXAMPLES
The nds and processes ofthe present invention will be better understood in
connection with the following examples, which are intended as an illustration only and not
limiting of the scope of the invention. Various changes and modifications to the disclosed
embodiments will be apparent to those skilled in the art and such changes and
modifications including, without limitation, those relating to the chemical structures,
substituents, derivatives, ations and/or s of the invention may be made
without departing from the spirit of the invention and the scope of the appended claims.
The synthesis of Compound 1 and the methanesulfonate, sodium, ium and
choline salts f is illustrated in the schemes below.
o 0 0' ENj
S , CH3OH
Urea s Pool3 s \ H
\ / 0/ NH N
I ,
\ \ I A
NHz or KOCN M o N CI
101 102 103
[O] [O] [O]
N n-BuLI, THF, DMF N CH3NH2/CH3OH N
S S
\ \N S
N \
l NaBH4 N
\ I NACI / \ / I
O NAC' \
—NH NACI
105 105
P o ‘5”
N/ o’R HO’ \N
I E 1 I
CIAN /
N O/
s \ N R1
R1 (R=Et) or R2 (R=Me)
/ N\ \ ' A
R\K >—N N CI
0 _N \
or ,8
O \N
107-1 (R=Et) |
107-2(R=Me) / 0/
R2
CO] [O]
N N
S \N L0H, S \N
O N O
/ \ I I
/ / N\ \ /
N \N
R N \N
‘o>_<:\>_N\—N | HO NH —
- N>—N\ |
/ O/ / 0/
108-1(R=Et) 1
108-2 (R=Me)
\ N N \N N \N
HO-NH -N \ I/ NaO-NH N \ l
0/ 0/
2 orNVNaOJt-Bu
“Sow Eoj
S \ N
HO—Nz—CNo N |
/ \>_N/_<\r:N \N
\ I/ /
orKOH/ Choline hydroxide
KO—t—Bu
E] l/ E)
HO~e\ N
N H2504
s \N
/ \>—N N/ N \N
\N e \ />—N
KO-NH —N \ I O-NH N I/
o /
The intermediate 107-1 or 107-2 can be prepared by reacting 106 with either Rl or R—2—
2, tively. The synthetic schemes for the sis of R—2-l and R2 are illustrated
below:
“N O/\
1 Na/E OH HCOOEt t
, EtO\/[co urea/HC|
EtO\/\002Et )—.
Et CAN I
2 EtOH H
2) MeZSO4
201 202 203
O O
Br2/ACOH N/ o/\ POCIa N / o/\
oAfi | I
HBr CIAN
204 R1
Or by an alternative method:
0N3 O
o O
H NJLHH2
NaH DME
2 HCI
R1 W/ R ’ o%t
| .R
o, ’ 0
R i | R,o o o
o o
2 H N \N
AO'R' R2/ 2
205 206 207
1 NaN02,HC|
o o
ZnCI
#,, NaNO
POC'a R
HCI, CH CI2
2 kaO/R )N: \
m \N HO N
R1: R = CHZCH3 208
R-2 2: R = CH3
Intermediate 108-1 and 108-2 can be prepared by the coupling reaction of 107-1 or 107-2
with either Rl or R—3—2, where Rl and R2 can be prepared according to the
following scheme:
NBS, CH3CN nBuLi/B(O—iPr)3
BrU \ / 303 /B
]: 0 U\
Cl o/
302 PdC|2(dppf) R—3—2
KOAc
EXAMPLE 1: Preparation of oxy-Z-(((2-(6-methoxypyridinyl)
morpholinothieno [3,2-d] pyrimidinyl)methyl)(methyl)amino)pyrimidine—5-
carboxamide (Compound 1 )
Step 21: (Z)-Ethyl—2—(ethoxymethyl)—3—methoxyacrylate (Compound 202)
Sodium (40.9 g, 1.78 mol) was added to l (750 mL) in portions carefully and
the solution was concentrated to give NaOEt powder after all sodium metal eared.
Under stirring, hexane (1.0 L) was added and the mixture was cooled with ice-water bath.
A mixture of 201 (130 g, 0.89 mol) and ethyl formate (131 g, 1.78 mol) was added
dropwise at O-SOC. The reaction mixture was stirred at room temperature overnight.
Dimethyl sulfate (224 g, 1.78 mol) was added dropwise with cooling of ice-water bath.
The ing mixture was heated at 50°C for 2 h. To the mixture was added
2012/031361
triethylammonium chloride (122 g) and sodium hydroxide (20 g). The e was then
stirred at room temperature for 4 h and filtered. The filtrate was washed with water and
dried over NazSO4. It was concentrated to afford the titled compound (140 g, 37%) as a
colorless oil which was used in the next step without further purification.
Step b: Ethyl 2-oxo—1,2,3,4-tetrahydropyrimidinecarboxylate (Compound 203)
A mixture of compound 202 (140 g, 0.745 mol), urea (40.0 g, 0.697 mol) and
concentrated hydrochloric acid (34 mL) in ethanol (500 mL) was heated at reflux
ght. Afler evaporating ~50% of volume of reaction, the resulting suspension was
filtered, washed with small amount of ethanol, and dried to give compound 203 (47 g,
37%) as a white solid. LCMS: 171 [M+1]+. 1H NMR (400 MHZ, CDC13): 8 1.19 (t, J: 7.2
Hz 3.92 (s, 2H), 4.08 (q, J: 7.2 Hz, 2H), 7.0 (s, 1H), 7.08 (d, J: 6.0 Hz 8.83
, 3H), , 1H),
((1, br, J: 4.8 Hz, 1H).
Step c: Ethyl 1,2-dihydropyrimidinecarboxy1ate (Compound 204)
To a solution of compound 203 (47 g, 280 mmol) in acetic acid (500 mL) was
added bromine (49.0 g, 307 mmol). The mixture was heated at reflux for 2 h, cooled to
room temperature, further cooled at 0-5°C and filtered to give the title compound 204 as a
yellow solid (38 g, 54%). LCMS: 169 [M+1]+. 1H NMR (400 MHz, D20): 8 1.28 (t, J:
7.2 Hz 4.32 (q, J: 7.2 Hz 9.00 (br, s, 2H).
, 3H), , 2H),
Step (1: Ethyl 2-chloropyrimidinecarboxylate (Compound R1)
A mixture of compound 204 (38.0 g, 153 mmol) and phosphoryl trichloride (300
mL) and N, N-dimethylaniline (3 mL) was heated at reflux for 2 h, cooled to room
temperature and concentrated. The residue was quenched carefully with ice-water,
adjusted pH to 7-8 with sodium carbonate and ted with EtOAc. The combined
organics were washed with ice—water and brine, dried over Na2S04, evaporated, and
purified by column chromatography (eluted with EtOAc/Hexanes, 10%) to afford
compound R—2-1 (15 g, 52%) as a white solid. LCMS: 187 [M+1]+. 1H NMR (400 MHz,
CDC13)I 8 1.36 (t, J= 7.5 Hz 4.39 (q, J= 7.5 Hz, 2H), 9.08 (s, 2H).
, 3H),
Step e: Sodium (dimethoxymethyl)methoxyoxopropenolate (Compound
206)
A mixture ofNaH (27 g, 60% in mineral oil, 0.675mol) in anhydrous 1,2-
dimethoxyethane (300 mL) was heated to 40—50 0C and methyl 3,3-dimethoxy nate
(205) (100 g, 0.675 mol) was added dropwise. The resulting mixture was stirred for 0.5 h
and ous methyl formate (81 g, 1.35mol) was added dropwise at 40-50 °C. The
resulting mixture was d at 40-50 0C (inner temperature) for 2 h before it was cooled
to 0 0C. The reaction mixture was allowed to warm to 25 0C slowly and stirred overnight.
EtzO (150 mL) was added and stirred for 30 min. The resulting suspension was filtered.
The solid was washed with EtZO (lOOmL), collected and dried to afford the title compound
206 (82 g, 61%) as an off—white solid. LCMS (m/z): 130.8 [M+1]+. 1HNMR (400 MHz,
CD3OD)I 8 3.36 (s, 6H), 3.60 (s, 3H), 5.34 (s, 1H), 8.92 (s, 1H).
Step f: o-pyrimidine—5-carboxylic acid methyl ester (Compound 207)
To a mixture of guanidine hydrochloride (42.2 g, 0.44 mol) in DMF (300 mL) was
added compound 206 (80 g, 0.40 mol). The resulting e was heated at 100 °C for 1 h.
The on mixture was filtered before cooled. The filter cake was washed with 50 mL
ofDMF and the combined filtrate was concentrated to leave a residue which was
suspended in cold EtOH and washed with cold EtOH (50 mL) to afford the compound 207
(38 g, 61.5%) as a yellow solid. LCMS (m/z): 154.2 [M+1]+, M+42]+. 1H NMR
(400 MHz, CD30D)2 5 3.88 (s, 3H), 8.77 (s, 2H).
Step g: Methyl 2-chloropyrimidinecarboxy1ate (Compound R—2-2)
Compound 207 (7 g, 0.046 mol) was added to a mixture of concentrated
hydrochloric acid (15.2 mL) and CHzClz (60 mL). After cooling, ZnClz (18.6 g, 0.138
mol) was added at 15-20 0C. The mixture was stirred at 15-20 0C for 0.5 h and cooled to 5-
0C. NaNOz (9.5 g, 0.138 mol) was added portion wise while keeping the internal
temperature 5—10 0C. The reaction was continued for ~ 2 h. The reaction mixture was
poured into ice-water (50 mL). The organic layer was separated and the aqueous phase
was extracted with CHZClz (30 mL*2). The combined organic extracts were concentrated
to afford crude product (4.2 g). The crude compound was suspended in hexane (20 mL),
heated at 60 0C for 30 minutes and filtered. The filtrate was concentrated to afford the title
compound R2 (3.5 g, 44.4 %) as an ite solid. LCMS (m/z): 214.1[M+42]+.
1HNMR (400 MHz, CDC13): 5 4.00 (s, 3H), 9.15 (s, 2H).
Step h: 5-Bromomethoxypyridine (Compound 303)
A solution of 2-methoxy-pyridine (100 g, 0.92 mole), NBS (180 g, 1.0 mole) in
itrile (1.0L) was d at reflux for 21 h. TLC showed that the reaction was
complete. The reaction e was cooled to room temperature and concentrated. ~900ml
t was collected. The resulting suspension was filtered and washed with n-hexane
(~400mL). The filtrate was concentrated again to afford crude t. The crude product
was distilled at reduced pressure (300C/~0.3mmHg) to afford the title compound as a clear
oil (146 g, 84%). LCMS (m/z): 190.0 [M+1]+. 1H NMR (400 MHz, CDCl3)I 8 3.90 (s,
3H), 6.65 (d, J= 8.8 Hz, 1H), 7.62 (dd, J= 8.8 Hz, 2.4Hz, 1H), 8.19 (s, 1H).
WO 35571
Step i: 6—Methoxypyridiny1boronic acid (R—3-1):
To a solution of compound 303 (20 g, 0.11 mole) in anhydrous THF (180 ml) was
added dropwise n-BuLi (59 mL, 2M in THF) at -78 °C, the ing e was d
for 1 h. Triisopropyl borate (37mL) was added at -78 CC and the reaction mixture was
warmed to room temperature and continued to stir overnight. TLC (hexanes/ethyl acetate
=5 : 1) showed reaction complete. The mixture was adjusted pH to 3-4 with 4N HCl (90
ml). The precipitate was collected by filtration to afford crude nd R1 (21 g,
128%). The crude compound R1 (21 g) was dissolved in water (200 m1) and the solution
was ed pH to 8-9 with concentrated ammonia on, the precipitate was collected
by filtration to afford the pure title compound R1 as a white solid.(11 g, 67%). LCMS
(m/Z): 154.1 [M+1]+. 1H NMR (400 MHZ, DMSO-d6): 5 3.86 (s, 3H), 6.76 (d, J: 8.4 HZ,
1H), 7.99 (dd, J= 8.4 HZ, 2.0 HZ, 1H), 8.05 (br, 2H), 8.52 (d, J= 2.0 HZ, 1H).
Step j: 2-methoxy(4,4,5,5,-tetramethyl-1,3,2-dioxaborolanyl)pyridine (Compound
R2)
A mixture of compound 303 (55 g, 0.29 mol), ,4',5,5,5’,5'-octamethy1 -2,2'-
bi(1,3,2—dioxaborolane) (90 g, 0.35 mol), potassium acetate (57 g, 0.58 mol) and
bis(triphenylphosphine)palladium(II) chloride (2.2 g, 3 mmol) in anhydrous dioxane (500
mL) was heated at 108°C under N2 atmosphere overnight. The reaction mixture was
concentrated and purified by column chromatography eluted with hexanes/ethyl acetate to
afford title compound R2 (58 g, 84 %). 1H NMR (400 MHZ, DMSO-d6): 5 1.30 (s,
12H), 3.88 (s, 3H), 6.81 (d, J: 8.0 HZ, 1H), 7.88 (dd, J: 8.0 HZ, 2.0HZ, 1H), 8.41 (d, J:
2.0HZ, 1H).
Step k: Thieno[3,2-d]pyrimidine-2,4(1H,3H)—dione (Compound 102)
Urea method: A mixture of methyl 3-aminothiophenecarboxylate (101) (90.0
g, 573 mmol, 1.0 eq) and urea (277.6 g, 4.6 mol, 8.0 eq) was heated at 190°C for 3-4 h and
cooled to room temperature. To the reaction mixture was added aq. NaOH (10%, 800 mL).
After stirring at ambient temperature for 1 h, the solid was removed by ion. The
filtrate was acidified with HCl to pH 3-4, the precipitated solid was collected by filtration,
washed with water and dried in vacuo to give the desired product compound 102 as an off-
white solid (87 g, 89%). m.p.:280-2850C. LCMS (In/Z): 169.0 [M+1]+. 1H NMR (400
MHZ, DMSO- d6): 5 6.92 (d, J: 5.2 HZ, 1H), 8.05 (d, J: 5.2 HZ, 1H), 11.0-11.5 (br, 2H).
KOCN method: To a mixture of 3-aminothiophenecarboxylate (101) (100.0 g,
636.9 mmol, 1.0 eq), acetic acid (705 mL) and water (600 mL) was added a solution of
potassium cyanate (154.8 g, 1.91 mol, 3.0 eq) in water (326 mL) slowly over a period of 1
h. The resulting mixture was stirred at room temperature for 20 h, filtered and rinsed with
water (500 mL). The cake was charged to a suitably sized reactor and 2 M s sodium
hydroxide solution (1.65 L) was added, the slurry was d for 2 h and LCMS ed
the formation of the desired product. The mixture was cooled to 10°C and 3 M aqueous
hydrochloric acid (1.29 L) was added until the pH = 5.0 ~ 6.0. The slurry was filtered,
rinsed with water (700 mL), and dried in vacuum oven at 50°C for 24 h to afford
compound 102 (100 g, 94%) as an off-white solid. LCMS (m/z): 169.1 [M+1]+. 1H NMR
(400 MHz, ’6): 8 6.92 (d, J: 5.2 Hz, 1H), 8.04 (d, J: 5.2 Hz, 1H), 11.14 (s, 1H),
11.51 (s, 1H).
Step 1: 2,4-Dichlorothieno[3,2-d]pyrimidine (Compound 103)
Phosphorous oxychloride (152 mL, 1.67 mol, 7.0 eq) was added slowly to cold
on of compound 102 (40 g, 238 mmol, 1.0 eq) and N,N—dimethylaniline (22.5 mL,
179 mmol, 0.75 eq) in acetonitrile (250 mL) while maintaining the temperature below
20°C. The mixture was then heated to 85°C and stirred for 24 h. The reaction mixture was
cooled to 15°C, and then poured slowly onto a mixture of ice and cold water (360 mL).
The resulting slurry was filtered, rinsed with cold water (200 mL). The cake was dried in
vacuum oven at 40°C for 24 h to afford compound 103 (40.5 g, 83%) as an off— white
solid. M.p.:245—250°C. LCMS (m/z): 205.0 . 1H NMR (400 MHz, DMSO-d6): 5
7.75 (d, J: 5.2 Hz, 1H), 8.71 (d, J: 5.2 Hz,1H).
Step m: 2-Chloromorpholinothieno[3,2-d]pyrimidine (Compound 104)
To a mixture of compound 103 (34.2 g, 167 mmol, 1.0 eq) and methanol (500 mL)
was added morpholine (31.2 mL, 367 mmol, 2.2 eq) slowly. The reaction mixture was
stirred at room ature overnight. The precipitate was collected by filtration, washed
with methanol and dried in vacuo to give the desired product compound 104 as a light-
yellow solid (39 g, 91%). M.p.: 250-255°C. LCMS (m/z): 256.0 [M+1]+. 1H NMR (400
MHz, DMSO-d5)2 8 3.76 (t, J: 5.2 Hz, 4H), 3.92 (t, J: 5.2 Hz, 4H), 7.42 (d, J: 5.2 Hz,
1H), 8.32 (d, J: 5.2 Hz, 1H).
Step 11: 2-Chloromorpholinothieno[3,2-d]pyrimidinecarbaldehyde (Compound 105)
To a suspension of compound 104 (20 g, 78.4 mmol, 1.0 eq) in THF (anhydrous,
320 mL) at -78°C was added n-BuLi (in hexanes, 2.4 M, 40.8 mL, 102 mmol, 1.3 eq)
slowly under nitrogen. The resulting slurry was d to warm up to -60°C to turn into a
clear brown solution. The reaction mixture was then cooled to -78°C again and DMF
(anhydrous, 9.1 mL, 118 mmol, 1.5 eq) was added slowly. The resulting solution was
stirred at -78°C for 0.5 h, warmed up to 0°C over 1 h and was poured slowly to a e
of aq HCl (0.25 M, 660 mL) and ice water (320 mL). The resulting slurry was stirred at 0-
°C for 0.5 h, filtered, washed with cold water and dried in vacuo to afford compound
105 as a yellow solid (22 g, 98%). 60-265°C. LCMS (m/z): 284.0 [M+1]+ 1H NMR
(400 MHz, DMSO-d6): 8 3.77 (t, J= 5.2 Hz, 4H), 3.96 (t, J= 5.2 Hz, 4H), 8.30 (s, 1H),
.21 (s, 1H).
Step 0: (2-Chloromorpholinyl-thieno[3,2-d]pyrimidinylmethyl)- methyl-amine
(Compound 106)
To a solution of compound 105 (20.0 g, 70.4 mmol, 1.0 eq) in methanol (125 mL)
was added methylamine solution in methanol (27% v/v, 75 mL, 563.2 mmol ) under
nitrogen atmosphere. The reaction mixture was stirred at room temperature overnight and
the t was removed in vacuo to give a crude solid product, which was dissolved in
methanol (550 mL) and THF (220 mL) under nitrogen. Sodium borohydride (8g, 211.2
mmol) was added in portions and reaction mixture was stirred at room temperature
overnight. The reaction mixture was evaporated in vacuo and water (300 mL) was added.
The aqueous e was extracted with methylene chloride and the ed extracts
were dried over Na2804 and concentrated. The residue was dissolved in 6M HCl (230 mL)
and stirred for 30 min. The aqueous solution was washed with methylene chloride for
several times, and adjusted to pH 9-10 with NaOH (4N). The precipitated solid was
collected by filtration and dried (60°C, 6h) to give a light yellow solid (18 g, 85%). M.p.:
240-245°C. LCMS (m/z): 299 . 1H NMR (400 MHz, DMSO-d6): 8 2.32 (s, 3H),
3.74 (t, J: 5.2 Hz, 4H), 3.88 (t, J: 5.2 Hz, 4H), 3.96 (s, 2H), 7.24 (s, 1H).
Step p(a): 2-[(2-Chloromorpholinyl—thieno[3,2-d]pyrimidinylmethyl)-methy1—
amino]-pyrimidinecarboxylic acid ethyl ester (Compound 107-1)
To a mixture of 106 (10 g, 33.6 mmol) and R—2-1 (6.8 g, 36.4 mmol) in CH3CN
(400 mL) at room temperature was added diisopropylethylamine (220 mL, 1.26 mol). The
ing mixture was stirred at room temperature overnight. The mixture was then
ated and followed by the addition of methylene chloride (300 mL). The organic
phase was washed with water, dried over Na2SO4 and concentrated in vacuo to leave a
e. To the residue was added ethyl acetate and the resulting mixture was stirred at
ice/water bath temperature for 50 min. The resulting solid was collected by filtration to
give the titled t 107-1 as a white solid (10.6 g, 70%). LCMS: 449 [M+1]+. 1H
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NMR (400 MHZ, DMSO—d6): 8 1.30 (t, J: 7.2 Hz, 3H), 3.25 (s, 3H), 3.71 (t, J: 5.2 Hz,
4H), 3.83 (t, J: 4.8 Hz, 4H), 4.29 (m, 2H), 5.21 (s, 2H), 7.39 (s, 1H), 8.87 (s, 2H).
Step p(b): 2-[(2—Chloro—4—morpholiny1-thieno[3,2—d]pyrimidin—6—ylmethyl)-methyl—
amino]—pyrimidinecarboxylic acid methyl ester und 107-2)
A mixture of compound 106 (25 g, 84 mmol), CH3CN (500 mL) and R2 (16 g,
92 mmol) was stirred at room temperature. Diisopropylethylamine ) (500 mL, 2.9
mol) was added. The solution was stirred overnight and evaporated. After methylene
chloride (500 mL) was added, the organic phase was washed with water, dried with
Na2804 and concentrated in vacuo. To the residue was added ethyl acetate (200 mL) and
the mixture was stirred in ter bath for 50 min. The title product was collected as a
white solid (29.4 g, 81%). LCMS (m/z): 435.2 [M+l]+. 1HNMR (400 MHz, DMSO-d6):
3.25 (s, 3H), 3.71 (t, J= 5.2 Hz, 4H), 3.82-3.84 (m, 7H), 5.21 (s, 2H), 7.39 (s, 1H), 8.87
(s, 2H).
Step q(a): Ethyl(((2-(6-methoxypyridinyl)morpholinothieno [3,2-d]pyrimidin- 6-
yl) methyl) (methyl)amino)pyrimidinecarboxylate (Compound 108-1)
Method A: A mixture of compound 107-1 (12 g, 26.7 mmol), Rl (4.9 g, 32
mmol), NaHC03 (6.7 g, 80.1 mmol) and bis(triphenylphosphine)palladium(II) chloride
(188 mg, 0.267 mmol) in a mixed solvents of toluene (80 ml), ethanol (50 ml) and water
(10 ml) was heated at 108°C for 4.5 h under N2 atmosphere. TLC showed reaction was
complete. The reaction mixture was then cooled to room temperature and water (20 ml)
was added. The resulting solid was collected by filtration and was then suspended in
ethanol (100 mL). The sion was d at room temperature for 30 minutes and
filtered. The collected solid was washed with ethanol and dried in vacuo to afford titled
nd 108-1 as a white solid (10g, 72%).
Method B: A mixture of compound 107-1 (1.5 g, 3.34 mmol), R—3—2 (1.6 g, 6.68
mmol), NaHC03 (0.84 g,10.0 mmol) and bis(triphenylphosphine)palladium(II) chloride
(1 18 mg, 0.167 mmol) in a mixed solvents of toluene (24 ml), ethanol (15 ml),and water
(3 ml) was heated at 108°C under N2 atmosphere overnight. The reaction mixture was
partitioned between dichloromethane and water. The organic layer was separated and was
washed with brine, dried over Na2S04, d and evaporated in vacuo to give a residue
which was purified by column chromatography eluted with hexanes/ethyl acetate to afford
compound 108-1 as a white solid (1.7 g, 98 %).
m.p.198-202°C. LCMS: 522.30 . 1H NMR (400 MHz, DMSO-ds): 8 1.31
(t, J: 7.2 Hz, 3H), 3.28 (s, 3H), 3.76 (t, J: 4.4 Hz, 4H), 3.93 (t, J: 4.4 Hz, 4H), 3.94 (s,
3H), 4.30 (q, .1: 7.2 Hz, 2H), 5.24 (s, 2H), 6.92 (d, J: 8.8 Hz, 1H), 7.47 (s, 1H), 8.57 (dd,
J: 8.8 Hz, 2.0Hz, 1H), 8.88 (s, 2H), 9.15 (d, J: 2.0 Hz, 1H).
Step q(b): Methyl(((2-(6-methoxypyridin—3—yl)—4-morpholinothieno [3,2—d]pyrimidin-
6-yl) methyl) (methyl)amino)pyrimidinecarboxylate (Compound 108-2)
To a mixture of compound 107-2 (20 g, 46.0 mmol), B1 (9.2 g, 60.2 mmol, 1.3
eq.) in dioxane (540 mL) at room temperature was added solid NaHC03 (11.6 g, 138.1
mmol, 3 eq.) followed by the on ofwater (40 mL). The resulting mixture was
degassed by passing N2 through surface of solution. Bis(triphenylphosphine)
ium(II) de (323 mg, 0.46 mmol, 0.01eq.) was then added and the resulting
e was heated at 108°C for 15h. TLC and LCMS showed reaction complete. The
reaction mixture was filtered through Celite while it was still hot (>90°C) and washed with
dioxane (70 mL). The filtrate was cooled gradually to room temperature and white fine
crystals formed during cooling period. The suspension was filtered and washed with
dioxane (80 mL) to afford the titled compound 108—2 as a white solid (18g, 78%). LCMS
(m/z): 508.3 [M+1]+. 1H NMR (400 MHZ, DMSO-d6): 5 3.28 (s, 3H), 3.76 (t, J: 4.8 Hz,
4H), 3.82 (s, 3H); 3.92 (m, 4H), 3.93 (s, 3H), 5.20 (s, 2H), 6.91 (d, J: 8.8Hz, 1H), 7.47 (s,
1H), 8.57 (dd, J= 8.8Hz, 2.4Hz, 1H), 8.88 (s, 2H), 9.15 (d, J= 2.0Hz, 1H).
Step 1': N—Hydroxy(((2-(6-methoxypyridinyl)morpholinothieno[3,2-d] din-
ethyl)(methyl)amino)pyrimidinecarboxamide (Compound 1)
Preparation of hydroxylamine methanol solution
A mixture ofNHzOHHCl (80 g, 1.12 mol) in MeOH (400 mL) was heated at 60—
65 0C for 1h to form a clear solution. It was then cooled in an ice-water bath. To the cold
mixture was added a solution ofKOH (96 g, 1.68 mol) in MeOH (240 mL) dropwise
while maintaining the reaction temperature at 0-10 °C. The resulting mixture was stirred
at 0 CC for 30 minutes and then filtered through a constant pressure funnel filled with
anhydrous Na2S04 (700 g). The filtrate was ted under an ice-bath and stored in
refrigerator for future use.
Preparation of Compound 1 from compound 108—1
Compound 108-1 (10 g, 19 mmol) was suspended in the above freshly prepared
hydroxylamine methanol solution (1.79M, 350 ml). To this mixture was added
dichloromethane (100 mL). The reaction flask was sealed and the mixture was stirred at
WO 35571
room temperature for 5 h before it turned into clear solution. Reaction was stirred for
additional 9 h. and was filtered to remove any insoluble solid. The filtrate was adjusted to
pH 6-7 with the addition of acetic acid to form solid precipitate. The solid was ted
by filtration and washed with water and m amount of methanol, dried in vacuo at
60°C for 5h to afford compound 1 as a white solid (9.2g, 96%). mp. 177-180°C. LCMS:
509.3 [M+1]+. 1H NMR (400 MHz, DMSO-d6): 5 3.24 (s, 3H), 3.76 (t, J= 5 Hz, 4H),
3.92 (t, J: 5 Hz, 4H), 3.92 (s, 3H), 5.20 (s, 2H), 6.90 (d, J: 8.8 Hz, 1H), 7.44 (s, 1H),
8.57 (dd, J: 8.8 Hz, 2.4Hz, 1H), 8.75 (s, 2H), 9.01 (s, 1H), 9.14 (d, J: 2.0 Hz, 1H), 11.08
(s,lH).
Preparation of Compound 1 from compound 108-2
To a suspension of compound 108-2 (31 g, 61.1 mmol) in dichloromethane (310
mL) at room temperature was added above freshly prepared hydroxylamine methanol
solution (1.79M, 744 ml). The reaction flask was sealed and the reaction mixture was
d at room temperature for 5 h. The reaction mixture turned into a clear solution. The
reaction solution was filtered to remove any insoluble solid. To the filtrate was then added
water (310 mL) and there was no solid formed during the addition. Acetic acid (18.5 mL)
was added to adjust pH to 10.20 nuously monitored by pH meter) while stirring.
There was no internal temperature change during acetic acid addition. The resulting
reaction mixture was continued to stir for r 4 h. White solid gradually formed. The
suspension was d and washed with minimum amount of methanol (100mL x 3). The
collected white solid was re-suspended in methanol (620mL) and water (124mL) to form a
suspension. To the above suspension was added additional acetic acid (11g) to adjust the
pH to 5-6. The change of the solid form was observed. The suspension was continued to
stir for another 2 h and d through filter paper and washed with minimum amount of
methanol (100 mL x 3). The collected white solid was dried in oven (50°C) for 12 h to
afford the title Compound 1 as a white solid , 76.0%). m. p.: 255-259°C. LCMS
(m/z): 509.3 [M+1]+. 1H NMR (400 MHz, DMSO-d6): 8 3.24 (s, 3H), 3.76 (t, J: 5.2 Hz,
4H), 3.92 (t, J: 5.2Hz, 4H), 3.92 (s, 3H), 5.20 (s, 2H), 6.91 (d, J: 8.4Hz, 1H), 7.45 (s,
1H), 8.57 (dd, J: 8.4Hz, 2.4Hz, 1H), 8.75 (s, 2H), 9.07 (s, 1H), 9.14 (d, J: 2.4Hz, 1H),
11.14 (s,lH).
EXAMPLE 2: Preparation of N-hydroxy-Z-(((2-(6-methoxypyridinyl)
morpholinothieno[3,2-d]pyrimidinyl)methyl)(methyl)amino)pyrimidine—5-
carboxamide methanesulfonate (Compound 2)
Method A: To a mixture of Compound 1 (300 mg, 0.59 mmol) and MeOH/EtZO
(3/1, 40 mL) was added a solution of methanesulfonic acid (114 mg, 1.18 mmol) in MeOH
(3 mL) at 0°C. The resulting mixture was stirred at 0°C for 3 h. The precipitate was
collected by filtration and washed with Et20 to afford Compound 2 as a white solid (260
mg, 73%).
Method B: To a suspension of Compound 1 (1.5 g, 2.95 mmol) in
dichloromethane/ MeOH (40 mL/ 10 mL) was added methanesulfonic acid (341 mg, 3.55
mmol) in 2 mL MeOH at room temperature (15°C) to form a clear on. The reaction
mixture was stirred at room temperature overnight. The reaction mixture was still clear.
Ethyl acetate (40mL) was added to the mixture and continued to stir for 3 h at room
temperature. The resulting precipitate was ted by filtration to afford Compound 2 as
a white solid (1 .45g, 83%).
mp: 179-185 °C. LCMS: 509.3 [M+1] +. 1H NMR (400 MHz, DMSO—d6): 8 2.35
(s, 3H), 3.26 (s, 3H), 3.78 (t, J: 9.6 Hz, 4H), 3.95 (s, 3H), 4.03 (t, J: 9.2 Hz, 4H), 5.24
(s, 2H), 6.99 (d, J: 8.8 Hz, 1H), 7.50 (s, 1H), 8.54 (dd, J: 8.8 Hz, 2.4 Hz, 1H), 8.76 (s,
2H), 9.12 (d, J= 2.4 ,11.11(br,1H).
EXAMPLE 3: Preparation of N-hydroxy(((2-(6-methoxypyridinyl)
linothieno[3,2-d]pyrimidinyl)methyl)(methyl)amino)pyrimidine—5-
carboxamide sodium salt (Compound 3)
To a suspension of Compound 1 (300 mg, 0.59 mmol) in methanol (30 mL) at 0°C
was added slowly t-BuONa (85 mg, 0.88 mmol). The resulting mixture was warmed to
room temperature and continued to stir for 2 h. The reaction was concentrated and the
residue was ated and washed with ethanol followed by filtration to afford nd
3 as awhite solid (230 mg, 73%). mp: 3 °C. LCMS: 509.3 [M+1] +. 1H NMR (400
MHz, DMSO-d6): 5 3.17 (s, 3H), 3.75 (s, 4H), 3.92 (s, 7H), 5.16 (s, 2H), 6.90 (d, J: 8.4
Hz, 1H), 7.42 (s, 1H), 8.57 (d, J: 8.0 Hz, 1H), 8.65 (s, 2H), 9.14 (s, 1H).
EXAMPLE 4: Preparation of N-hydroxy-Z-(((2-(6-methoxypyridinyl)
morpholinothieno[3,2-d]pyrimidinyl)methyl)(methyl)amino)pyrimidine—5-
carboxamide potassium salt (Compound 4)
To a mixture of nd 1 (400 mg, 0.78 mmol) in methanol (50 mL) was
added t—BuOK (132 mg, 1.17 mol) at 0°C under N2. The mixture was stirred at 0°C for
1h and continued to stir at room temperature for 1.5h. The insoluble solid was d by
filtration and the filtrate was cooled to -20°C. EtzO (100 mL) was added to the filtrate. The
resulting mixture was stirred at -20°C for 1h. Hexanes (70 mL) was added and the
mixture was continued to stir at -20°C for 2h. The solid was collected by filtration and
dried in vacuo to afford Compound 4 as a white solid (150 mg, 35%). mp: 174-179°C.
LCMS: 509.3[M+1]+. 1H NMR (400 MHz, DMSO-ds): 8 3.16 (s, 3H), 3.74-3.76 (m, 4H),
3.90-3.93 (m, 7H), 5.15 (s, 2H), 6.90 (d, J= 8.4Hz, 1H), 7.43 (s, 1H), 8.39 (br, 1H), 8.58
(d, J: 8.8Hz, 1H), 8.62 (s, 2H), 9.15 (s, 1H).
EXAMPLE 5: Preparation of N-hydroxy—Z-(((2-(6—methoxypyridinyl)
morpholinothieno[3,2-d]pyrimidin-6—yl)methyl)(methyl)amino)pyrimidine—5-
carboxamide choline salt (Compound 5)
To a solution of Compound 1 (200 mg, 0.39 mmol) in OH (60 mL/12
mL) was added choline hydroxide (106 mg, 0.39 mmol, 45% in MeOH). The mixture was
stirred at room temperature for 2 h and was then concentrated to remove ~ 30 mL of the
solvent. Ethyl acetate (60 mL) was added and the mixture was d at room temperature
for 2 h. After a small amount of precipitation occurred, the mixture was concentrated to
remove ~ 40 mL of the solvent and additional ethyl acetate (60 mL) was added. The
mixture was stirred at room temperature for 2 h and filtered to afford nd 5 as a
white solid (180 mg, 76%). mp: 181-185°C. LCMS: 509.3[M+1]+. 1H NMR z,
DMSO-dg): 8 3.11 (s, 9H), 3.17 (s, 3H), 3.40 (t, J: 4.8Hz, 2H), 3.75 (t, J: 4.8Hz, 4H),
3.84 (br, 2H), 3.90-3.93 (m, 7H), 5.15 (s, 2H), 6.89 (d, J: 8.8Hz, 1H), 7.41 (s, 1H), 8.57
(dd, J: 8.8Hz, 2.4Hz, 1H), 8.64 (s, 2H), 9.14 (d, J: 2.0Hz, 1H).
EXAMPLE 6: Preparation of N-hydroxy-Z-(((2-(6-methoxypyridinyl)
morpholinothieno[3,2-d]pyrimidinyl)methyl)(methyl)amino)pyrimidine—5-
amide sulfate (Compound 6)
To a suspension of Compound 1 (200 mg, 0.39 mmol) in OH (30 mL/7.5
mL) was added sulfuric acid (77 mg, 0.79 mmol, in 1 mL MeOH) to form a clear solution.
The reaction mixture was stirred at room temperature ght. The precipitation
occurred and tert-butyl methyl ether (60 mL) was then added. The resulting mixture was
continued to stir for 1 h at room temperature. The solid was collected by filtration to afford
Compound 6 as a white solid (180 mg, 76%). M.p.: 6°C. LCMS: 509.3 [M+1]+. 1H
NMR (400 MHz, DMSO-d6): 8 3.26 (s , 3H), 3.78 (t, J = 4.8 Hz, 4H), 3.96 (s, 3H), 4.03 (t,
J = 4.4 Hz, 4H), 5.24 (s, 3H), 6.98 (d, J = 8.4 Hz, 1H), 7.50 (s, 1H), 8.54 (dd, J = 8.8 Hz,
2.4 Hz, 1H), 8.76 (s, 2H), 9.12 (d, J = 2.0 Hz, 1H) 11.06 (br, 1H).
Example 7: P13 Kinase Activity Assay
The following assays were used to determine the ability of Compound 1 to inhibit
various isoforms and mutants of PI3K.
PI3KOL
PI3K0L activity was measured using ADP-G10 luminescent kinuse assay. P13K0L, a
complex of N-terminal GST-tagged recombinant full-length human p1100. and untagged
recombinant full length human p85a were coexpressed in a Baculovirus infected Sf9 cell
expression system. (GenBank Accession No. for p110a, U79143; for p850i, XM_043 865).
The proteins were purified by one-step affinity chromatography using glutathione-agarose.
A competition assay was performed to e the amount ofADP generated from ATP
in the presence ofpurified inant PI3K0L (p1100i/p85oi) and PIP2. PI3K0L was
ted with 20 uM PIP2 substrate in the reaction buffer (50 mM HEPES, pH 7.4, 150
mM NaCl, 5 mM MgCl2, 3 uM Naorthovanadate, 1 mM DTT, 10 MM ultra pure ATP and
0.5% DMSO) for 30 minutes at 30°C. The ADP generated in the reaction was then
measured by the ADP-G10 Assay. The assay was med in two steps; first an equal
volume of ADP-GL0TM Reagent (Promega) was added to terminate the kinase reaction
and deplete the remaining ATP. In the second step, the Kinase Detection Reagent was
added, which simultaneously converts ADP to ATP. The newly synthesized ATP was
measured using coupled luciferase/luciferin on. The IC50 determined for Compound
1 in this assay was less than 100 nM.
The ability of Compound 1 to inhibit the PI3K0. mutants H1047R and E545K was
also determined using the general re described above. The IC50 determined for both
mutants was less than 100 nm.
PI3K|§
Activity of PI3KB was measured using time-resolved fluorescence resonance
energy transfer (TR-FRET) assay utilizing homogenous time resolved fluorescence
(HTRF) technology. P13KB, a complex ofN—terminal histidine-tagged recombinant fiJll-
length human p110[3 and untagged recombinant full length human p85& were coexpressed
in a Baculovirus infected Sf21 cell expression . (GenBank Accession No. for
pl 100, NM_006219; for p850i, XM_043865). The proteins are purified by one-step
affinity chromatography using glutathione-agarose. A competition assay was med
to measure the amount of PIP3 generated from PIP2 in the presence of purified
inant PI3Kbeta (pl lOB/p85a). PI3KB was incubated with 10 uM PIP2 ate in
the reaction buffer (20 mM HEPES, pH 7.5, 10 mM NaCl, 4 mM MgC12, 2 mM DTT, 10
uM ATP and 1% DMSO) for 30 minutes at 30°C. The reaction product was then mixed
With a PIP3 detector protein, europium—labeled antibody, biotin-labeled PIP3 probe and
allophycocyanin-labeled Streptavidin. A sensor complex is formed to generate a stable
TR-FRET signal in the on mixture. This signal intensity decrease as biotin—labeled
probe g to the PIP3 detector is displaced by PIP3 produced by enzymatic activity
and the amount of unbound biotin-labeled PIP3 probe in the mixture increases. TR-FRET
signal was determined using microplate reader with background subtraction.
The IC50 determined for Compound 1 in this assay was between 100 and 1000 nM.
m
ty of PI3K5 was measured using fluorescence polarization assay. P13K8, a
complex ofN-terminal histidine-tagged recombinant fiJll-length human pl 108 and
untagged recombinant full length human p850i were coexpressed in a virus infected
Sf9 cell expression system. (GenBank ion No. for p1105, NM_005026). The
proteins are purified by one-step affinity chromatography using glutathione-agarose. A
competition assay was med to measure the amount of PIP3 generated from PIP2 in
the presence of purified recombinant PI3K8 (p1108/p850i). PI3K8 was incubated with 10
uM PIP2 substrate in the reaction buffer (20 mM HEPES (pH 7.5), 10 mM NaCl, 4 mM
MgClz, 2 mM DTT, 10 uM ATP and 1% DMSO) for 1 hour at 30°C. The reaction product
was then mixed with a PIP3 detector n and the fluorescent PIP3 probe. Polarization
(mP) values decrease as fluorescent probe binding to the PIP3 detector is ced by
PIP3 produced by enzymatic activity and the amount of unbound fluorescent probe in the
mixture increases. Polarization degrees (mP) value was determined using microplate
reader with background ction.
The IC50 determined for Compound 1 in this assay was less than 100 nM.
PI3Ky
Activity of PI3Ky was measured using time—resolved fluorescence resonance
energy transfer (TR-FRET) assay utilizing homogenous time resolved cence
(HTRF) technology. N—terminal ine tagged human P13K8 was expressed in a
Baculovirus infected Sf9 cell expression system. (GenBank Accession AF327656). The
proteins are purified by one-step y chromatography using glutathione-agarose. A
competition assay was performed to measure the amount of PIP3 generated from PIP2 in
the presence of purified recombinant PI3Ky (p120y). PI3Ky (2 nM) was incubated with
M PIPZ substrate in the reaction buffer (20 mM HEPES, pH 7.5, 10 mM NaCl, 4 mM
MgC12, 2 mM DTT, 10 uM ATP and 1% DMSO) for 30 minutes at 30°C. The reaction
product was then mixed with a PIP3 detector protein, europium—labeled antibody, biotin-
labeled PIP3 probe and allophycocyanin-labeled Streptavidin. A sensor complex is
formed to generate a stable T signal in the reaction mixture. This signal intensity
decrease as biotin-labeled probe binding to the PIP3 detector is displaced by PIP3
produced by tic activity and the amount of unbound biotin-labeled PIP3 probe in
the mixture increases. TR-FRET signal was determined using microplate reader with
background subtraction.
The IC50 ined for Compound 1 in this assay was between 100 and 1000 nM.
Example 8: HDAC Activity Assay
HDAC inhibitory activity was assessed using the Biomol Color de Lys system
0, Biomol, Plymouth Meeting, PA). Briefly, HeLa cell nuclear extracts were used
as a source of HDACs. Different concentrations of test compounds were serially diluted in
ylsulfoxide (DMSO) and added to HeLa cell nuclear extracts in the ce of a
colorimetric artificial ate. Final assay condition contained 50 mM Tris/Cl, pH 8.0,
137 mM NaCl, 2.7 mM KCl and 1 mM MgC12. Reactions were carried in room
temperature (25°C) for 1 hour before addition of developer for termination. Relative
enzyme activity was ed in the WALLAC Victor II 1420 microplate reader as
fluorescence intensity (excitation: 350- 380 nm; emission: 440-460 mm). Data were
analyzed using GraphPad Prism (v4.0a) with a sigmoidal dose se curve fitting for
leo calculation. The IC50 determined for Compound 1 in this assay was less than 100
The activities of Compound 1 against HDAC es were also determined.
HDAC city assays were performed at BPS Bioscience (San Diego, CA), following
their standard operating procedure. Briefly, purified flag- (human HDAC-1), NCOR2-
(human HDAC3), GST- (human HDAC4, 6, 7, 10 and 11) or His- (human HDAC 2, 5, 8
and 9) tagged s were expressed in Sf9 insect cells and purified before use. The
substrate used for HDACl, 2, 3, 6, 7, 8, 9 and 11 was HDAC Substrate 3 developed by
BPS Bioscience. For other HDAC enzymes, HDAC Class 2a substrate was used. All
enzymatic reactions were conducted in duplicate at 37°C for 30 minutes, except HDAC11
enzyme assay, which was conducted at room temperature for 3 hours.
The table below sets forth the results for each of HDACs 1-11, with IC50 values
provided as s: I> 1000 nM; 100 nM < I] < 1000 nM; 10 11M < 111 < 100 nM; IV <
nM.
mun-“n-
Example 9: Cell Proliferation Assay
Human cancer cell lines were purchased from American Type Culture Collection
(Manassas, VA) and plated at 5,000 to 10,000 per well in 96-well flat—bottomed plates
with culture , as suggested by the provider. The cells were then incubated with
compounds at various concentrations for 72 hours in culture medium supplemented with
0.5% (V/V) fetal bovine serum (FBS). Growth inhibition was accessed by adenosine
triphosphate (ATP) content assay using Promega CellTiter-Glo kit. Promega CellTiter—Glo
kit is an ATP monitoring system based on firefly luciferase. , l6ul of mammalian
cell lysis and substrate solution was added to 84ul of culture medium per well to lyse the
cells and ize the ATP. The mixture was shaken and incubated for 30 minutes and
subsequently the luminescence was measured. IC50 values were calculated using PRISM
software Pad Software) with sigmoidal dose-response curve fitting.
Table 1 shows the antiproliferative activity in these cell-based assays of Compound
1 and reference compounds SAHA, GDC-0941 and the combination of SAHA and GDC-
0941. In these assays, the following g was used: I > 10,000 nM, 10,000 nM 2 II 2
1000 nM,1000 nM > 111 Z 100 nM, 100 nM > IV 2 10 nM, and V <10 nm for IC50.
Table 1
Cancer Type GDC- SAHA/
SAHA Cmpd 1
Cell Line 0941 GDC—0941
Pancreas
UACC—893 II II III IV
B-Cell
Lymphoma
Multiple
Myeloma
Example 10: Formulations of Compound 1
a. Compound 1 in 30% ol (10 mg/mL):
To a Vial containing compound 1 (10 mg) was added 30% Captisol (0.937 ml). The
mixture was sonicated for 2 min. To the mixture was added sodium hydroxide (1 N, 39.3
ul, 2 eq.) and sonicated/vortexed to give a clear solution (pH =12). The solution was then
ed to pH = 10 with hydrochloric acid (1 N, 23.6 ul, 1.2 eq.).
b. Compound 1 in 30% Captisol (7.5 mg/mL):
To a vial containing nd 1 (7.5 mg) was added 30% Captisol (0.941 ml).
The mixture was sonicated for 2 min. To the mixture was added sodium ide (1 N,
29.5 ul, 2 eq.) and sonicated/vortexed to give a clear solution (pH =12). The solution was
then adjusted to pH = 5 with hydrochloric acid (1 N, 29.5 ul, 2 eq.).
c. Compound 1 in C10/PEG1450/PEG400 (5 mg/mL):
To a vial containing compound 1 (5 mg), sodium decanoate (20 mg), PEG400 (40
ul), and PEG1450 (40 mg) was added H20 (0.88 ml) and NaOH (1 N, 24.6 ul, 2.5 eq.).
The mixture was sonicated and vortexed to give a clear solution which was then adjusted
to pH = 10 with HCl (1 N, 7.4 ul, 0.75 eq.).
Example 11: Pharmacokinetics and Pharmacodynamics Studies in Tumor-Bearing
Mice
Nude mice bearing H2122 tumors
Nude mice bearing H2122 (human non-small cell lung cancer cell line) xenograft
tumors were used for pharmacokinetics studies. Compound 1 was formulated in water
With sodium decanoate and PEG400 (5 mg/ml) and was administered orally (PO) via
gavage to each animal at a dose of 50 mg/kg. At various time points following compound
administration, three mice per time point were euthanized with C02, and blood and tumor
tissues were collected. Blood was ted into tubes ning sodium heparin. The
plasma was separated via centrifugation. Plasma and tissues were stored at —80°C for later
is. A PE Sciex API-3000 MS system (Applied Biosystems, Inc., Foster
City, CA) was used to analyze compound concentrations in plasma and tumor tissues.
The results of this study are summarized in Figure 1 and Table 2, below. Figure 1
is a graph of nd 1 concentration in plasma and tumor tissue versus time following
oral administration. The results show that Compound 1 preferentially accumulates in
tumor tissue. This is supported by the results set forth in Table 3, which show a
significantly longer half-life of Compound 1 in tumor tissue than in plasma as well as
significantly greater re oftumor tissue to Compound 1 (AUC).
Table 2
m..(ng/mL> —_
Area under the Curve 2126
(ng/mL*hr)
SCID Mice bearing Daudi Tumors
Daudi odgkin’s lymphoma cell line) cells were implanted into female Scid
(severe complex immune-deficient) mice. Following establishment of tumors, s
were dosed by oral gavage with 25, 50 or 100 mg/kg Compound 1, ated in 30%
Captisol, pH 10, at a concentration of 1.875, 3.75 or 7.5 mg/mL, respectively.
At various time points following compound administration, three mice per time
point were ized with C02, and blood and tumor tissues were collected. Blood was
collected into tubes containing sodium heparin. The plasma was separated via
centrifugation. Plasma and tissues were stored at —80°C for later analysis. A PE Sciex
API-3000 LC-MS/MS system (Applied Biosystems, Inc., Foster City, CA) was used to
analyze compound concentrations in plasma.
The results of this study are summarized in Figures 2A, 2B and 2C and Table 3,
below. Figure 2A is a graph of Compound 1 concentration in plasma versus time
following oral administration and shows a ependent exposure to the compound.
Figure 2B is a graph of Compound 1 concentration in tumor tissue versus time following
oral administration. The results show that Compound 1 preferentially accumulates in
tumor tissue in a dose dependent manner. Plasma and tumor concentrations following the
100 mg/kg dose are compared in Figure 2C, which shows that tumor tissue entially
takes up Compound 1. This is supported by the results set forth in Table 3, which show a
significantly longer half-life of Compound 1 in tumor tissue than in plasma as well as
significantly greater exposure r tissue to Compound 1 (AUC).
Table 3
Half-life (Hours) 12.62
cmax (ng/mL) 2285.39 1044.7
Area under the Curve 6 3973.56
*hr)
Tn...x (hr) 0.24 0.10
Pharmacodynamics
Tumors were collected for PD evaluation ing treatment with a single dose
of Compound 1 at 25 mg/Kg, 50 mg/kg and 100mg/kg. Protein was extracted from
tumor tissues using a Tissuelyser (Qiagen, ia, CA) according to the
manufacturer’s instructions. 30ug of n was routinely used for WB analysis as
described above. Cell lysates were resolved on NuPAGE Novex 4-12% Bis—Tris gels
(Invitrogen) and transferred to nitrocellulose nes (Bio-Rad Laboratories,
Hercules, CA). The blots were probed with s primary antibodies overnight at 4°C.
GAPDH (glyceraldehyde 3—phosphate dehydrogenase, l:30,000, Abcam, Cambridge,
MA) was used as an internal control for each assay. Membranes were then incubated
with infrared labeled secondary antibodies (1210000) conjugated-IR Dye-800 (Rockland
Immunochemicals, Inc. Gilbertsville, PA) or conjugated-Alexa 680 (Invitrogen).
Membranes were imaged with the Odyssey Infrared Imaging System (Li-Cor
Biotechnology, Lincoln, NE).
The results of this study are set forth in Figure 3, which presents Western blots of
tumor tissue extracts from the three dose groups. These results show that Compound 1
inhibits the KT-mTOR y, supresses the RAF—MEK—ERK pathways,
downregulates RTK protein levels and up-regulates tumor suppressor p53 and p21
levels.
Example 12: Pharmacokinetic Study in Dogs
A pharmacokinetic study of Compound 1 in beagle dogs was also conducted using
iv administration at 5 mg/kg in water with sodium decanoate/PEG400 (5 mg/ml) and oral
administration at 5 mg/kg with sodium decanoate/PEG4000/PEG1450 (pH 10) in enteric
capsules. Plasma was collected at s time points and analyzed for Compound 1
concentration by LC-MS/MS. The results of the study are shown in Figure 4 and Table 4,
below. Figure 4 is a graph of plasma concentration versus time for both oral and iv
dosing. Significant plasma levels of Compound 1 are achieved via oral dosing.
Table 4
Parameter PO Capsule
Cmax (ng/mL) 6156.16 312.]
Area under the Curve 2977.47 450.4
(ng/mL*hr)
Bioavailability (%) _ 15.1
Example 13: Pharmacokinetic Study in Rats
The purpose of this study was to ine the plasma pharmacokinetics of
Compound 1 in male Sprague-Dawley rats following oral administration of Compound 1.
nd 1 was ved in 30% Captisol in water to yield a l
concentration of 10 mg/mL (pH=10) for oral administration. The resulting clear yellow
on was stored at room temperature until picked up for dosing.
Three male Sprague-Dawley rats from Charles River Laboratories were used in
this study. High fat diet (VHFD, Dl2492i) from Research Diets Inc. were provided ad
libitum throughout the in-life portion of the study. Compound 1 was administered via a
single oral (PO) gavage dose at 20 mg/kg.
Blood samples ximate volume 150 uL) were collected tail vein at 0.25, 0.5,
l, 3, 6, and 24 hours postdose. Blood samples were placed into tubes containing sodium
heparin and centrifuged at 8000 rpm for 6 minutes at 4°C to separate plasma from the
samples. Following centrifugation, the resulting plasma was transferred to clean tubes and
stored frozen at —80°C pending bioanalysis.
The concentrations of Compound 1 and its primary metabolite in the plasma
samples were determined using a PE Sciex API-3000 LC—MS/MS system (PE—Sciex.,
Foster City, CA).
The pharmacokinetic parameters were determined from mean tration-time
data in the test ts. A compartmental modeling of WINNONLIN® Professional 5.2.
was used to calculate parameters. Any concentrations that were below the limit of
quantitation (lower limit of quantitation = 1 ng/mL) were omitted from the ation of
parameters in individual animals.
Following oral administration of nd 1, the mean values of Cmax and Tmax
for Compound 1 were 39.5 ug/L and 0.1 hr, respectively. The mean value of AUC(0_00)
was 163.6 ug/L*hr. The value of half-life (TV) was 11.7 hr.
Example 14: Evaluation of Compound 1 in Xenograft Tumor Models
A. SU-DHL4, H2122, Daudi and OPM2 Xenograft Tumor Models
SU—DHL4 (diffuse large B-cell lymphoma cell line), H2122 (human NSCLC cell
line), Daudi (non-Hodgkin’s lymphoma cell line), and OPM2 (multiple myeloma tumor
cell line) cells were ted into either nude or Scid (severe complex immune-deficient)
mice. Following establishment rs, animals with sufficient tumor size were
randomly assigned into active (Compound 1) and control (vehicle) groups. Compound 1
was ated for oral administration as in e 7(b), and delivered by oral gavage
based on the body weight of each individual animal. The control groups were treated with
vehicle using the same dosing schedule as the corresponding active group.
The H2122 tumor group (nude mice) received nd 1 at doses of 75 mg/kg
twice a day initially and then 50 mg/Kg twice a day from Day-11 for five days per week
due to body weight loss at 75 mg/Kg. In one study, the Daudi tumor group (Scid mice)
ed Compound 1 at doses of 25, 50 or 100 mg/Kg five day per week. In another
study, the Daudi tumor group was dosed at 50 mg/Kg twice a day for five days per week.
In another study, the efficacy of orally administered Compound 1 in the Daudi tumor
model was compared to oral GDC-0941 and oral vorinostat, both individually and in
combination. The OPM2 tumor group received Compound 1 at doses of 50 mg/kg twice a
day for five days per week. The SU—DHL4 tumor group was dosed at 100 mg/Kg orally or
50 mg/Kg intravenously.
Tumors were measured during the study period with an electronic caliper, and
body weights were measured twice a week. The following formula was used to calculate
the tumor volume:
Tumor volume = (length X )/2
Percentage oftumor volume change was used to describe compound activity over the
treatment period.
The results of these s are summarized in Figures 5A to SC and 9 to 12, which
show tumor size versus time for active and control groups for each of the tumor types.
Figures 5A, 5B, 5C and 12 show that Compound 1 is efficacious in the H2122, Daudi and
OPM2 tumor models. As set forth in Figure 9, Compound 1 inhibited Daudi tumor
growth in a dose-dependent manner. Figure 10 compares the mor activity of
Compound 1 at 100 mg/Kg in the Daudi model with either GDC—0941 or vorinostat alone
or in combination. The indicated doses are the maximum tolerated dose (MTD) of each
ent, and the pretreatment tumor size was 157 i 65 mm3 (mean i SE). The data
indicate that nd 1 is more efficacious than vorinostat, GDC-0941, or a
combination of both. Finally, Compound 1 strongly inhibited tumor growth in the SU—
DHL4 diffuse large B-cell lymphoma xenograft model following enous (IV)
stration at 50 mg/kg or orally (PO) at 100 mg/kg (Figure 11). The pretreatment
tumor size was 147 i 21 mm3.
MM1S Xenograft Model
Female SCID/Beige mice at age 4 weeks were housed in ventilated isolator
cages (INNOCAGE®IVC, Innovive Inc., San Diego, CA) in a controlled climate, fed with
sterile high—fat diet (Problab-RMH 2000) ad libitum and provided with sterilized water.
All housing and supplies for SCID/Beige mice were sterilized by autoclaving before use.
Mice were inspected daily including weekends/holidays by trained animal facility
personnel and investigators. All animal procedures were performed under e
conditions within a biosafety cabinet (for injections) or laminar flow hood (for animal
husbandry and non-invasive ures).
MMlS human MM cells (Goldmannieikin RB, et al, J Lab Ciz'r: haves:
1980;}13:335-345) were originally obtained from peripheral blood of a multiple myeloma
patient. eserved cells were thawed in a 37°C water bath and cultured in RPMI
medium plus 10% Fetal Bovine Serum (FBS) in a tissue culture incubator at 5% C02.
Cells were sent to outside vendors for contaminants and rodent pathogen screening
ed to rule out contamination by mycoplasma (by PCR) and/or virus (by MAP test,
Mouse Antibody Production). When the cells in culture were enough for implantation,
they washed with serum free Hank’s balanced salt solution (HBSS). Finally the cells were
diluted in HBSS for implantation. Only single-cell suspensions of greater than 90%
viability (by trypan blue exclusion) were used for injection and 20 million cells per animal
suspended in 0.2 ml HBSS were injected subcutaneously in the right hind flank region of
the mouse after a minimum 7 day acclimation period, using a lCC syringe with a 26G
rmic needle, taking care to avoid blood vessels. Successful implantation was
indicated by the formation of a round, raised mass under the skin. The ted mice
were monitored for general health and tumor development daily.
Tumors were detectable about two weeks following implantation. Tumor size was
measured with a caliper. The following formula was used to calculate the tumor volume:
Tumor volume = (length X width2)/2
Three weeks after tumor implantation, tumors reached an average of 194.6 i 37.9
mm3. Animals with acceptable tumor size and shape were randomly assigned into two
groups of eight animals each, using sorting software, one vehicle control and one
ent group.
Compound 1 was formulated and dosed as follows: 7.5 mg/ml was ved in
30% Captisol with 2 molar equivalents ofNaOH and HCl each and dosed by oral gavage
everyday five times per week based on body weight of each mouse. The control group was
dosed with vehicle (30% ol) using same dosing paradigm.
During each animal study, tumors were measured with calipers, tumor size
determined using the above mentioned formula, and tumor size changes in percentage
calculated. Mouse body weights were measured with a scale twice per week. Studies were
continued until either: a) the predetermined end date ted in the study design; or b)
the onset of health problems, whichever occurred first. In addition, the following tumor-
d parameters warranted ion of euthanasia: (l) tumor burden exceeding 2500
mm3 and/or (2) loss of 220% of starting body weight. In addition to the determination of
tumor size changes, the last tumor measurement was used to generate the tumor weight
change ratio (T/C value), a standard metric ped by the National Cancer Institute
(NCI) for xenograft tumor evaluation T/C values were ated using the following
formula: % T/C = 100 x AT/AC if AT > 0. In cases where tumor regression occurred,
however, the following formula was used: % T/TO = 100 X AT/TO if AT < 0.
The treatment period was 15 days. Tumor sizes and body weights were measured
again on the last day of the study.
As shown in Figure 13, Compound 1 single agent inhibited tumor growth in the
MMlS subcutaneous tumor model. The T/C values are calculated to be 27.37%
(p<0.0001, ANOVA) based on day 14. No body weight loss or other side effects were
observed for the Compound 1 single agent treatment group.
MM1R Xenograft Model
Female SCID/Beige mice at age 4 weeks were housed in ventilated micro-isolator
cages (INNOCAGE®IVC, Innovive Inc., San Diego, CA) in a controlled climate, fed with
sterile high-fat diet (Problab—RMH 2000) ad libitum and provided with ized water.
All housing and supplies for SCID/Beige mice were sterilized by autoclaving before use.
Mice were inspected daily including weekends/holidays by d animal facility
personnel and investigators. All animal procedures were performed under sterile
ions within a biosafety cabinet (for injections) or r flow hood (for animal
husbandry and non-invasive procedures).
MMlR human MM cells were originally obtained from peripheral blood of a
multiple myeloma patient (GoldmanwLeikin RB, et 213., Jim) CID: Invest. 1980, l 3:335"-
345). Cryopreserved cells were thawed in a 37°C water bath and cultured in RPMI
medium plus 10% Fetal Bovine Serum (FBS) in a tissue culture tor at 5% C02.
Cells were sent to outside vendors for contaminants and rodent pathogen ing
intended to rule out contamination by mycoplasma (by PCR) and/or Virus (by MAP test,
Mouse Antibody Production). When the cells in culture were enough for implantation,
they washed with serum free Hank’s balanced salt solution . Finally the cells were
diluted in HBSS for implantation. Only single-cell suspensions of greater than 90%
Viability (by trypan blue exclusion) were used for injection and 15 million cells per animal
suspended in 0.1 ml HBSS were injected subcutaneously in the right hind flank region of
the mouse after a minimum 7 day acclimation , using a 1CC syringe with a 26G
hypodermic needle, taking care to avoid blood vessels. Successful implantation was
indicated by the formation of a round, raised mass under the skin. The implanted mice
were monitored for general health and tumor development daily.
Tumors were detectable about two weeks following implantation. Tumor size was
measured with a r. The following formula was used to calculate the tumor volume:
Tumor volume = (length X width2)/2
Three weeks after tumor implantation, tumor reached an average of 131.7 i 28.7
mm}. Animals with able tumor size and shape were ly assigned into two
groups of eight animals each, using sorting software, one vehicle control and one
treatment group.
Compound 1 was formulated and dosed as follows: 7.5 mg/ml was ved in
% Captisol with 2 molar equivalents ofNaOH and HCl each and dosed by oral gavage
everyday five times per week based on body weight of each mouse. The control group was
dosed with vehicle (30% Captisol) using same dosing paradigm.
During each animal study, tumors were measured with rs, tumor size
determined using the above mentioned formula, and tumor size changes in percentage
calculated. Mouse body s were measured with a scale twice per week. Studies were
continued until either: a) the predetermined end date indicated in the study design; or b)
the onset of health problems, whichever occurred first. In addition, the ing tumor-
related parameters warranted provision of euthanasia: ( 1) tumor burden exceeding 2500
mm3 and/or (2) loss of 220% of starting body weight. In addition to the determination of
tumor size changes, the last tumor measurement was used to generate the tumor weight
change ratio (T/C value), a standard metric developed by the National Cancer Institute
(NCI) for xenograft tumor evaluation. T/C values were calculated using the following
formula: % T/C = 100 x AT/AC if AT > 0. In cases where tumor regression occurred,
however, the following formula was used: % T/TO = 100 x AT/TO if AT < 0.
The treatment period was 18 days. Tumor sizes and body weights were measured
again on the last day of the study.
As shown in Figure 14, Compound 1 single agent ted tumor growth in the
MMIR aneous tumor model. The T/C values are calculated to be 21.15%
(p<0.0001, ANOVA) based on day-17. No body weight loss or other side s were
observed for the Compound 1 single agent treatment group.
Example 15: Effect of Compound 1 on Circulating cytes
A study examining the effect of Compound 1 on circulating T and B lymphocytes
was conducted in CD1 wild type mice. Five mice were treated with Compound 1
formulated as in Example 8(b) (5 mg/mL) at 100 mg/kg orally for five utive days.
Another 5 mice were treated with vehicle. Blood was collected at various time points
(including pre—dosing, during dosing and post-dosing) from the mandibular vein. Blood
was ed with a flow cytometer for T and B cell quantification.
The effect of Compound 1 on T and B lymphocyte levels in lymphoid organs,
spleen and lymph nodes, was also evaluated. Mice were treated with Compound 1 orally
at 100 mg/kg for five consecutive days. The animals were sacrificed, and the lymphoid
organs were collected. Cells were physically dissociated from the tisues and ed
with a flow cytometer. Anti—CD3 and —CD19 antibodies were used to stain T and B cells,
respectively.
The results of these studies are shown in Figure 6, a graph showing blood
lymphocyte levels over time. Compound 1 shows a cant reversible reduction in the
blood levels of both T and B lymphocytes compared to control. A similar effect is seen in
lymphocyte levels in the spleen and lymph nodes. Both of these organs show a significant
reduction in both T and B lymphocytes following dosing with Compound 1 compared to
controls.
Example 16: Effect of Compound 1 on Hematopoietic Cells in Bone Marrow
Bone marrow was also removed from the mice ced in Example 12. Bone
marrow content were collected from the mice long bones and analyzed with flow
ter. Various markers for progenitor or mature lymphocytes were used. The results
showed that treatment with Compound 1, while causing a decrease in eral T and B
cyte counts, induced a compensatory increase in marrow lymphocyte progenitor
cells compared to controls.
Example 17: Mini-Salm0nella/Mammalian-Microsome Reverse Mutation Assay
This study was conducted to evaluate the ability of Compound 1 to induce e
ons either in the presence or absence of mammalian microsomal enzyme (S9-mix)
at the histidine locus in the genome of 2 s of Salmonella typhimurium (TA98 and
TAl 00).
The tester strains used in the mutagenicity assay were Salmonella typhz'murz'um
tester strains TA98 (for detecting frame-shift reverse on) and TA100 (for detecting
point reverse mutation). The assay was conducted in both the ce and absence of S9
mixture along with concurrent vehicle (DMSO, 20 ul/well) and positive controls in
duplicate using 6-well plates. Five concentrations with 2X succeeding dilutions g
from 1000 to 62.5 ug/well (equivalent to 5000 to 312.5 ug/plate in standard Ames assay)
were tested for each of the compounds. After incubation at 37°C for 48—72 hours, plates
2012/031361
were observed for compound insolubility and cytotoxicity, and d to count revertants
colonies. A reproducible two-fold increase (>2x of vehicle control) of revertant colonies
over the daily average control value is considered a positive se of gene mutation for
each strain.
Compound 1 was dissolved in yl sulfoxide (DMSO), which also served as
the ve (vehicle) l. 2-nitrofluorene and sodium azide served as the positive
controls in the absence of S9 for TA98 and TA100 respectively. 2-Aminoanthracene
served as the positive controls in the presence of S9 for TA98 and TA100.
Results
Compound 1 formed a maroon solution when dissolved in DMSO at a
concentration of 50 mg/ml, which was the most concentrated stock solution. The test
article remained a light maroon to colorless solution in all 2X succeeding ons down
to 3.125 mg/ml. The precipitation of the test article was observed when the test article and
soft agar were mixed together at the concentration of 250ug/well and above. After 48-72
hours incubation, test article precipitation was seen ly under dissecting microscopy at
250 ug/well with TA98 and TA100 in the absence of S9 mix only, test article precipitation
and minor reduction of background lawn were seen slightly to moderately at 500 and 1000
ug/well with TA98 and TA100 in the presence and absence of S9 mix. There was no
evidence of a significant increase in the mean number of revertant colonies compared to
the average l when tested in the presence and absence of S9 mix with strains TA98
and TA100 (Table 5).
Results from the current study showed that Compound 1 did not induce a positive
mutagenic response with strains TA98 and TA100 in presence and absence of microsomal
enzymes when the test es were tested up to the maximum concentration of 1000
ug/well (equivalent to 5000 ug/plate in standard Ames assay).
Table 5: Mutagenicity Assay Results of Compound 1
REVERTANTS PER WELL
Conc. Background
TA98 TA100
ug/well Lawn c
1 2 Mean 1 2 Mean TA98/
TA1 00
MICROSOMES: NONE (-s9)
DMSO - 5 6 6 26 32 29 4/4
nd 1 62.5 4 4 4 34 30 32 4/4
Compound 1 125 4 6 5 32 34 33 4/4
Compound 1 250 6 5 6 34 29 32 4,sp/4,sp
Compound 1 500 5 3 4 33 31 32 3,sp/3,sp
Compound 1 1000 4 5 5 28 26 27 3,mp/3,mp
POSITIVE CONTROL 3 55 63 59* >300 >3 00 >300* 4/4
MICROSOMES (+S9)
DMSO - 6 6 6 34 33 34 4/4
Compound 1 62.5 4 6 5 34 30 32 4/4
nd 1 125 6 3 5 28 30 29 4/4
Compound 1 250 8 6 7 30 28 29 4/4
Compound 1 500 6 6 6 32 37 35 3,sp/3,sp
Compound 1 1000 6 7 7 33 34 34 3,mp/3,mp
POSITIVECONTROLb >300 >300 >300* >300 >300 >300* 4/4
2012/031361
aTA98: 2—nitrofluorene, 0.4ug/well; TA100: Sodium azide, 2.0 ug/well
TA98 and TA100: 2-aminoanthracene
, 0.8ug/well
C Background Lawn tion Codes:
. enhanced growth compared to the solvent controls,
4. similar as vehicle control (normal, no toxicity),
3. less than 25% reduction (less than 25% cytotoxicity),
2. more than 25% but less than 50% reduction (less than 50% cytotoxicity),
l. more than 50% reduction (more than 50% cytotoxicity),
0. no growth (100% cytotoxicity).
sp=slight precipitate mp=moderate precipitate hp=heavy precipitate
*: positive increase
Example 18: Pharmacodynamic Study in Tumor Cell Lines
Tumor cell lines H460 (Kras, PI3K), BT474 (HER2, PI3K), A375 (B-Raf) and
H1975 (EGFR, PI3K) were cultured and treated with DMSO alone (vehicle control) or 0.1
umol/L Compound 1 or reference compound for 16 hours. Cell extracts were prepared in
the presence of SDS and 2—mercaptoethanol and ed in polyacrylamide gels. Proteins
were erred to nitrocellulose filter and blotting was done using standard procedures
with blocking solutions r Bioscience) containing the indicated primary dy.
Primary antibodies against p-EGFR, EGFR, p—HER2, HER2, p-HER3, HER3, p-MET,
MET, p-bRaf, p—cRaf, pMEK, MEK, p-ERK, ERK and tubulin were purchased from Cell
Signaling Technology. Secondary dy conjugated with IRdye 680, 800CW were
used and the signal was detected with Li-Cor Odyssey Imager.
Immunocytochemistry was performed on cells grown in monolayer culture that
were treated as indicated in the figure legends and then fixed in 4% (w/v)
paraformaldehyde. After washing in 1X PBS, immunostaining was performed in Li-Cor
blocking solution containing the indicated primary dies and IRDye 680- or 800CW—
conjugated secondary antibodies. For l-western, a Li-Cor Odyssey infrared imager
was used for detection and quantification of results.
For histological examination of pharmacodynamic markers, tumor xenografts were
harvested and ed in paraffin, and then 4—5-mm sections were ed. The
sections were mounted on slides and reacted with primary antibodies followed by
horseradish dase-conjugated secondary antibody (Envision polymer-HRP, Dako,
Glostrup, Denmark). The color reaction was then performed using obenzidine
(DAB) as recommended by the er. Counterstaining of the sections was done with
hematoxylin.
The results of this study are summarized in Figures 7A-7g and 8A-8C. Compound
1 inhibits HDAC activity and PI3K y signaling in KRAS- and PI3KCA-mutant
H460 non-small cell lung cancer (NSCLC) cells. Cells were treated with DMSO alone
(vehicle control) or containing test compounds for l h before Western blot or in-cell-
western was performed. Figure 7A shows that Compound 1 at l umol/L increases the
levels of acetylated histone 3 (Ac-H3), tubulin (Ac-Tub), and p53 (Ac-p53). The
compound also upregulates total p53 and p21 content. The data set forth in Figures 7B-7E
show that Compound 1 increases levels of acetylated-tubulin (Figure 7B), acetylated
histone 3 (Figure 7C), acetylated p53 (Figure 7D), and acetylated p21 (Figure 7E) in a
dose-dependent manner. Resulting IC50 values suggest that Compound 1 has comparable
HDAC-inhibitory potency to LBH 589 in the cancer cells examined. At 1 umol/L,
Compound 1 inhibits the activation ofAKT and the downstream signaling proteins 4EBP—
l and p7OS6 (Figure 7F). Compound 1 also tently and potently inhibits
phosphorylation of Akt in a dose—dependent manner (Figure 7G).
One major limitation of PI3K tors in the ent of cancers is the activation
of the RAF-MEK-ERK pathway. HDAC inhibitors are able to inhibit kinase levels in this
signaling pathway in cancer cells via epigenetic modification. In tumors cells with various
mutations, such as the KRAS and PI3K mutations in H460 cells, the B-Raf on in
A375 cells, HERZ and PI3K ons in BT-474 cells, and EGFR mutations in H1975
cells, 100 nM Compound 1 suppressed tion of Raf, MEK, and ERK. The potent
HDAC tor LBH 589 showed similar activities in some of these Western blot assays
(Figure 8A).
In addition to inhibition of the PI3K and MEK pathways, treattment of RPMI-8226
myeloma cells with 1 uM Compound 1 for 16 h ted p-STAT3 (Y-705) and p-Src
(Figure 8B).
In EGFR-L858R-T790M double-mutant H1975 NSCLC cells and HER2-
overexpressing BT-474 breast cancer cells, Compound 1 was shown to reduce the levels
of orylated and total receptor ne kinases EGFR, HER2, HER3, and MET after
incubation for 16 h. Similar downregulation of the same kinases was observed after
treatment of these cells with LBH 589 (Figure 8C).
Example 19. Expression of PI3K110 a, [5, y and 6 in Hematological Xenograft Tumor
Models
Female immuno-deficient mice (Beige/SCID) at age 6—8 weeks were housed in
ventilated micro-isolator cages in a lled climate, fed with sterile high—fat diet
(Problab-RMH 2000) ad libitum and provided sterilized water. All housing and supplies
for SCID beige mice were disposable, and purchased irradiated from Innovive prior to use.
Mice were inspected daily including weekends/holidays by trained animal ty
personnel and investigators. All animal ures were performed under sterile
conditions within a biosafety cabinet (for injections) or laminar flow hood (for animal
husbandry and non-invasive procedures).
Human hematological cancer cell lines were originally obtained from human
cancer patients. Cryopreserved cells were thawed in a 37°C water bath and ed in
RPMI medium plus 10-15% Fetal Bovine Serum (PBS) in a tissue culture incubator at 5%
C02. Cells were sent to outside vendors for contaminants and rodent en screening
intended to rule out contamination by mycoplasma (by PCR) and/or virus (by MAP test,
Mouse Antibody Production).
When the cells in culture reached desired number, they were harvested and washed
with serum free Dulbecco’s phosphate buffered saline (DPB S). Finally the cells were
diluted in DPBS for implantation. Only single-cell suspensions of greater than 90%
viability (by trypan blue exclusion) were used for injection. After a seven day acclimation
period, 10 to 20 million cells per animal suspended in 0.1ml DPBS were injected
subcutaneously (SC) in the right hind flank region of the animal using a 0.5CC syringe
with a 26G hypodermic , taking care to avoid blood s. Successful
implantation was indicated by the formation of a round, raised mass under the skin. The
implanted mice were monitored for general health and tumor development daily.
Tumors were detectable about two and halfweeks following implantation. Tumor
size was measured with a caliper. The following formula was used to calculate the tumor
volume:
Tumor volume = (length X width2)/2
When tumor sizes reached about 150-300 mm3, mice were separated into four
groups including three treatment groups (25 mg/kg, 50 mg/kg and 100 mg/kg) and one
l group. Following dosing with nd 1, tumors were ted at 15 minutes,
WO 35571
1, 3, 6, 24 hours (3 mice for each time point). Tumors were collected according to the
time points listed above after mice were euthanized with C02. s were placed in the
dry ice until transferred to a —80°C freezer for Western blot is.
n was extracted from the tumor tissues using a homogenizer (Tissuelyser,
Qiagen, Valencia, CA) according to the manufacturer’s instructions. The adapters for
holding the tissue tubes were frozen at -20°C, and the lysis buffer and beads were chilled
at 4°C before use.
100—200 ug tissue was nized in 300 ul T-PER Mammalian Tissue Protein
Extraction reagent (Pierce, rd, IL) supplemented with phosphatase inhibitors (1:100
v/v, Tyr & Ser/Thr phosphatase inhibitor cocktails, Upstate). The specimen were checked
visually after each cycle (time: 0.15 minutes; frequency: 30Hz) until tissues were fully
homogenized. Approximately four cycles were needed in most cases. The tissue lysates
were centrifuged at 14,000 rpm at 4° C for 10 minutes. 200 ul atant was collected
and kept at -80°C. Protein concentration was measured using the BCA Protein Assay kit
(Pierce, Rockford, IL) according to the manufacturer’s instructions.
ug of total protein extract was resolved on NuPAGE Novex 4-12% Bis-Tris
gels (Invitrogen) and transferred to nitrocellulose membranes (Bio-Rad) using a Bio—Rad
Semi-Dry Transfer Machine. The blots were incubated with 10 ml Blocking Buffer
(Odyssey Infrared Imaging ) for 1 hour and then probed with the primary antibody
overnight at 4°C on a shaker. The blots were probed with the primary antibody overnight
at 4°C. Primary antibodies included PI3 Kinase p1 10a (#4249, 1:1000, Cell Signaling),
PI3 Kinase p110B (#3011, 1:1000, Cell Signaling), PI3 Kinase p110 y (#5405, 1:1000,
Cell Signaling), PI3 Kinase p110 8 (SC-7176 (1 : 1000, Santa Cruz Biotechnology, Santa
Cruz, CA). GAPDH (glyceraldehyde 3—phosphate dehydrogenase, 1/30,000, Abcam,
Cambridge, MA) was used as an internal l for each assay.
The membrane was rinsed four times with Tris-buffered saline Tween-20
(TBST,DAKO) and incubated for 1 hour at room temperature with the infrared ated
secondary antibodies (1 :10000): anti—Rabbit conjugated-IR Dye 800(Rockland), or anti-
Mouse conjugated-Alexa 680(Molecular Probes). The membrane was washed with TBST
and then placed in the Odyssey Infrared g System for imaging and is.
The results are set forth in Figure 15, which shows n blots of PI3K p110
isoforms, AKT and pAKT from several Non-Hodgkin’s Lymphoma and multiple
myeloma xenografts. The results show that activation ofAKT is driven by multiple PI3K
P110 isoforms.
Example 20: Comparison of Compound 1 and CAL-101 in the Daudi Xenograft
Tumor Model
Female SCID beige mice (CD-l Beige SCID) at 6-8 weeks of age were housed in
ventilated isolator cages in a controlled climate, fed with sterile high-fat diet
(Problab-RMH 2000 ad libitum and provided with sterilized water. All housing and
supplies for SCID beige mice are disposable, and sed irradiated from Innovive prior
to use. Mice were inspected daily including weekends/holidays by d animal facility
personnel and investigators. All animal procedures were performed under sterile
conditions in a biosafety cabinet (for injections) or laminar flow hood (for animal
husbandry and non-invasive procedures).
Daudi human t’s lymphoma cells were originally obtained from a human
Burkitt’s lymphoma patient. Cryopreserved cells were thawed in a 37°C water bath and
cultured in RPMI-1640 medium plus 15% Fetal Bovine Serum (FBS), 1% Penstrep, and
1% Glutamax in a tissue culture incubator at 5% C02. Cells were sent to outside vendors
for pathogen screening intended to rule out contamination by mycoplasma (by PCR)
and/or virus (by MAP test, Mouse dy Production). When the cells in culture
reached desired numbers, they were ted by centrifiJging. After collection, the cells
were washed with serum-free Dulbecco’s phosphate ed saline (DPBS). y the
cells were diluted in DPBS for implantation. Only single-cell suspensions of r than
90% Viability (by trypan blue exclusion) were used for injection and 20 million cells per
animal suspended in 0.1 ml DPBS were injected aneously in the right hind flank
region of the mouse after a minimum 7 day acclimation period, using a 0.5CC syringe
with a 26G hypodermic needle, taking care to avoid blood vessels. Successful
implantation was indicated by the formation of a round, raised mass under the skin. The
implanted mice were red for general health and tumor development daily.
Tumors were detectable about two weeks following implantation. Tumor size was
measured with a caliper. The following formula was used to calculate the tumor volume:
Tumor volume = (length X width2)/2
Four weeks after tumor implantation, tumors reached an average size of 300 :: 126
mm3. Animals with able tumor size and shape were randomly assigned into three
groups of seven animals each, using sorting software, one vehicle control and two
ent groups.
Groups Number of mice Dose ( mg/kg) Schedule
1 7 30% Captisol Qd* (Mon—Fri),
PO**
2 7 1 30 BID*** (Mon-
Fri)
3 7 Compound 1 100 Qd* (Mon-Fri),
PO* >l<
*Qd = Once daily dosing, **P0 = Oral Gavage dosing, ***BID, twice daily
Compound 1 was formulated and dosed as follows: Compound 1 (7.5 mg/ml) was
dissolved in 30% Captisol with 2 molar equivalents ofNaOH, balanced with 2 molar
equivalents of HCl, and dosed via oral gavage daily Monday through Friday. The control
group was dosed with vehicle (30% Captisol) using the same dosing gm as the
100mg/kg volume (6.67 ul/g).
During each animal study, tumors were measured with calipers, tumor size
determined using the above mentioned formula, and tumor size changes in percentage
calculated. Mouse body weights were measured with a scale twice per week. Studies
were continued until either: a) the predetermined end date indicated in the study design; or
b) the onset of health problems, whichever occurred first. In addition, the following
tumor-related parameters warranted provision of asia: tumor burden exceeding 2500
mm3 and/or loss of 220% of starting body . In addition to the determination of
tumor size changes, the last tumor measurement was used to generate the tumor weight
change ratio (T/C value), a standard metric developed by the National Cancer Institute
(NCI) for xenograft tumor evaluation. T/C values were calculated using the following
a: % T/C = 100 x AT/AC if AT > 0. In cases where tumor regression ed,
however, the ing formula was used: % T/To = 100 x AT/TO if AT < 0.
The treatment period was 15 days for the vehicle and CAL-101 , which
required earlier termination due to tumor size exceeding 10% of body weight, and 18 days
for the Compound 1 group. Tumor sizes and body weights were measured again on the
last day of the study.
The results of the study are presented in Figure 16, which shows tumor growth for
the active and control groups as a function of treatment time. The nd 1 group
showed significantly reduced tumor growth compared to the CAL-101 and control groups.
Example 21. ation of Compound 1 and Cyclophosphamide in the Daudi
Xenograft Tumor Model
Female SCID beige mice (CD-1 Beige SCID) at 6-8 weeks of age were housed in
ventilated micro—isolator cages in a controlled climate, fed with sterile high-fat diet
(Problab-RMH 2000 ad libitum and provided with sterilized water. All housing and
supplies for SCID beige mice are disposable, and purchased irradiated from Innovive prior
to use. Mice were inspected daily including weekends/holidays by trained animal facility
personnel and igators. All animal procedures were performed under sterile
conditions in a biosafety t (for injections) or laminar flow hood (for animal
dry and non-invasive procedures).
Daudi human Burkitt’s lymphoma cells were originally obtained from a human
Burkitt’s lymphoma patient. Cryopreserved cells were thawed in a 37°C water bath and
cultured in 640 medium plus 15% Fetal Bovine Serum (FBS), 1% Penstrep, and
1% Glutamax in a tissue culture incubator at 5% C02. Cells were sent to outside vendors
for en screening intended to rule out ination by mycoplasma (by PCR)
and/or virus (by MAP test, Mouse Antibody Production). When the cells in culture
reached desired numbers, they were harvested by centrifuging. After collection, the cells
were washed with free Dulbecco’s phosphate buffered saline (DPBS). Finally, the
cells were diluted in DPBS for tation. Only single-cell suspensions of greater than
90% viability (by trypan blue exclusion) were used for injection and 20 million cells per
animal ded in 0.1 ml DPBS were injected subcutaneously into the right hind flank
region of the mouse after a minimum 7 day acclimation period, using a 0.5 cc syringe with
a 26G hypodermic needle, taking care to avoid blood vessels. Successful implantation
was indicated by the formation of a round, raised mass under the skin. The implanted
mice were monitored for general health and tumor development daily.
Tumors were detectable about two weeks following tation. Tumor size was
measured with a caliper. The following formula was used to calculate the tumor volume:
Tumor volume = (length X )/2
Four weeks after tumor implantation, tumors reached an average size of 189 i 47
mm3. s with acceptable tumor size and shape were randomly assigned into four
groups of eight animals each, using sorting software, one vehicle control and three
treatment groups.
Groups Number of mice Schedule
1 8 30% Captisol Qd* (Mon-Fri),
0.9%NS
compound 1 75
4 8 Compound 1 75 Qd* (Mon-Fri),
+CTX 50 PO**
Day-0, iv
*Qd = Once daily dosing, **P0 = Oral Gavage dosing, ***BID, twice daily
Compound 1 was formulated and dosed as follows: Compound 1 (7.5 mg/ml) was
dissolved in 30% Captisol with 2 molar equivalents ofNaOH, balanced with 2 molar
equivalents of HCl, and dosed via oral gavage daily Monday through Friday at 75mg/kg.
Cyclophosphamide (“CTX”) was dissolved in 0.9% NS at 5mg/ml, and dosed iv (tail vein
injection) to s at 50mg/kg on Day-0. The ation group was dosed with both
Compound 1 and CTX using same dosing schedule. The control group was dosed with
vehicle (30% Captisol) and 0.9% NS using the same paradigm as for the combination.
During each animal study, tumors were measured with calipers, tumor size
determined using the above ned formula, and tumor size changes in percentage
calculated. Mouse body weights were measured with a scale twice per week. Studies
were continued until either: a) the predetermined end date ted in the study design; or
b) the onset of health ms, whichever occurred first. In addition, the following
tumor-related parameters warranted provision of euthanasia: tumor burden exceeding 2500
mm3 and/or loss of 220% of starting body weight. In addition to the determination of
tumor size changes, the last tumor measurement was used to generate the tumor weight
change ratio (T/C value), a rd metric developed by the National Cancer Institute
(NCI) for xenograft tumor evaluation. T/C values were calculated using the following
formula: % T/C = 100 x AT/AC if AT > 0. In cases where tumor sion occurred,
however, the following formula was used: % T/TO = 100 x AT/TO if AT < 0.
The treatment period was 2 weeks. Tumor sizes and body weights were measured
again on the last day of the study.
The results of this study are set forth in Figure 17, which shows tumor growth as a
function of treatment time for the control and treatment groups. As single agents,
nd 1 and cyclophosphamide ave similar ty in this model. The combination
of Compound 1 and cyclophosphamide showed ntially greater effeicacy than either
agen alone.
Example 22. Compound 1 in Combination with Lenalidomide in the MMlS
Xenograft Model
Female SCID/Beige mice at age 4 weeks were housed in ventilated micro-isolator
cages (INNOCAGE®IVC, Innovive Inc., San Diego, CA) in a controlled climate, fed with
e high-fat diet (Problab—RMH 2000) ad libitum and provided with sterilized water.
All housing and supplies for SCID/Beige mice were sterilized by aving before use.
Mice were inspected daily including weekends/holidays by trained animal facility
personnel and investigators. All animal procedures were performed under sterile
conditions within a biosafety cabinet (for injections) or r flow hood (for animal
husbandry and non-invasive procedures).
Cryopreserved MMlS human MM cells were thawed in a 37°C water bath and
cultured in RPMI medium plus 10% Fetal Bovine Serum (FBS) in a tissue culture
tor at 5% C02. Cells were sent to outside vendors for contaminants and rodent
pathogen screening intended to rule out contamination by asma (by PCR) and/or
Virus (by MAP test, Mouse dy Production). When the cells in culture were enough
for implantation, they washed with serum free Hank’s balanced salt solution (HBSS).
Finally the cells were diluted in HBSS for implantation. Only single-cell suspensions of
greater than 90% Viability (by trypan blue exclusion) were used for injection and 20
million cells per animal suspended in 0.2 ml HBSS were injected subcutaneously in the
2012/031361
right hind flank region of the mouse after a minimum 7 day acclimation period, using a
1CC syringe with a 26G hypodermic needle, taking care to avoid blood vessels.
Successful implantation was indicated by the formation of a round, raised mass under the
skin. The implanted mice were monitored for general health and tumor development
daily.
Tumors were detectable about two weeks following implantation. Tumor size was
measured with a caliper. The following formula was used to calculate the tumor volume:
Tumor volume = (length X )/2
Three weeks after tumor implantation, tumor reached an average of 192 :: 32 mm3.
Animals with acceptable tumor size and shape were randomly assigned into 6 groups of 7
animals each, using sorting software, one e l and six treatment groups.
_--_30% Capt1sol Qd*(M(on-F-ri), PO**
---_Compound1 Qd*:Mon—Fri), PO**
_-Compound1 Qd*((Mon—Fri), PO**
Compound 1 was formulated and dosed as follows: Compound 1 (7.5 mg/ml) was
dissolved in 30% Captisol with 2 molar equivalents ofNaOH, balanced with 2 molar
equivalents of HCl, and dosed via oral gavage daily Monday h Friday at 75mg/kg.
Lenalidomide ck, 2.5mg/m1) was formulated in MCT (0.5% methyl cellulose and
0.2% Tween80), and dosed at 12.5 mg/kg or 25mg/kg. The two combinations groups were
dosed with Compound 1 at 75 mg/kg plus one dose level of lenalidomide (either 12.5 or
mg/kg). The control group was dosed with vehicle (30% Captisol) and MCT using the
same paradigm as for the combination.
During each animal study, tumors were measured with calipers, tumor size
ined using the above mentioned a, and tumor size changes in percentage
calculated. Mouse body weights were measured with a scale twice per week. Studies
were ued until either: a) the predetermined end date indicated in the study design; or
b) the onset of health problems, whichever occurred first. In on, the following
tumor-related parameters warranted provision of euthanasia: (l) tumor burden exceeding
2500 mm3 and/or (2) loss of220% of ng body weight. In addition to the
determination of tumor size changes, the last tumor measurement was used to generate the
tumor weight change ratio (T/C value), a standard metric developed by the National
Cancer Institute (NCI) for xenograft tumor evaluation. T/C values were calculated using
the following formula: % T/C = 100 x AT/AC if AT > 0. In cases where tumor regression
occurred, however, the following formula was used: % T/To = 100 x AT/TO if AT < 0.
The treatment period was 17 days. Tumor sizes and body weights were measured
again on the last day of the study.
The results of this study are presented in Figure 18, which shows tumor growth as
a function of treatment time. The results show that Compound 1 at 75 mg/Kg PO is more
effective than Lenalidomide at either 12.5 or 25 mg/Kg PO as single agents. The results
also show that the combination of nd 1 and lenalidomide is significantly more
effective than either compound alone.
The patent and scientific literature referred to herein ishes the dge that
is available to those with skill in the art. All United States patents and published or
unpublished United States patent applications cited herein are incorporated by reference.
All published foreign patents and patent applications cited herein are hereby incorporated
by reference. All other published references, documents, manuscripts and ific
literature cited herein are hereby incorporated by reference.
While this invention has been ularly shown and described with references to
preferred embodiments thereof, it will be understood by those skilled in the art that various
changes in form and details may be made therein without departing from the scope of the
invention assed by the appended claims.
Claims (15)
1. A compound of Formula I: O N N S RO NH N N N 5 O (I) or a pharmaceutically acceptable salt thereof, n R is hydrogen or an acyl group.
2. The compound of claim 1 wherein R is R1C(O)-, wherein R1 is substituted or tituted -alkyl; substituted or unsubstituted C2-C24-alkenyl; substituted or 10 unsubstituted C2-C24-alkynyl; substituted or unsubstituted aryl; or substituted or unsubstituted heteroaryl.
3. The compound of claim 2 wherein R1 is C1-C6-alkyl, C2-C6-alkenyl or C2-C6-alkynyl. 15
4. The compound of claim 1 wherein R is H or acetyl.
5. A compound represented by the formula: O N N S HO NH N N N O , or a pharmaceutically acceptable salt thereof.
6. A pharmaceutical composition sing as an active ingredient a compound of claim 1 and a pharmaceutically acceptable carrier.
7. The pharmaceutical composition of claim 6 in the form of a tablet or capsule.
8. A pharmaceutical composition comprising as an active ingredient a nd of claim 5 and a pharmaceutically acceptable carrier.
9. The pharmaceutical composition of claim 8 in the form of a tablet or a e.
10. Use of a compound of claim 1 in the cture of a pharmaceutical composition for treating a PI3K related disease or disorder in a subject in need thereof, wherein 10 treatment comprises administering to the subject a therapeutically ive amount of the pharmaceutical composition.
11. The use of claim 10, wherein said PI3K related e or disorder is a cell proliferative disorder.
12. The use of claim 11 wherein the cell proliferative disorder is a cancer.
13. The use of claim 11, wherein the cell proliferative disorder is selected from the group consisting of papilloma, glioblastoma, Kaposi's a, melanoma, non-small cell 20 lung cancer, ovarian cancer, prostate cancer, squamous cell carcinoma, astrocytoma, head cancer, neck cancer, bladder cancer, breast cancer, lung cancer, colorectal cancer, thyroid cancer, atic cancer, gastric cancer, hepatocellular carcinoma, leukemia, lymphoma, Hodgkin's disease and Burkitt's disease. 25
14. Use of a compound of claim 1 in the manufacture of a pharmaceutical composition for treating an HDAC-mediated disease, wherein treatment comprises administering to a subject in need thereof the pharmaceutical composition.
15. Use of a nd of claim 1 in the cture of a pharmaceutical composition for 30 treating a disease mediated by both PI3K and HDAC, n treatment comprises administering to a subject in need thereof the pharmaceutical composition. {//
Priority Applications (1)
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NZ705039A NZ705039B2 (en) | 2011-04-01 | 2012-03-30 | Phosphoinositide 3-kinase inhibitor with a zinc binding moiety |
Applications Claiming Priority (5)
Application Number | Priority Date | Filing Date | Title |
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US201161470849P | 2011-04-01 | 2011-04-01 | |
US61/470,849 | 2011-04-01 | ||
US201161559489P | 2011-11-14 | 2011-11-14 | |
US61/559,489 | 2011-11-14 | ||
PCT/US2012/031361 WO2012135571A1 (en) | 2011-04-01 | 2012-03-30 | Phosphoinositide 3-kinase inhibitor with a zinc binding moiety |
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NZ615586B2 true NZ615586B2 (en) | 2015-05-28 |
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