NO20011362D0 - Algoritme for hurtige og sensitive databasesøk - Google Patents

Algoritme for hurtige og sensitive databasesøk

Info

Publication number
NO20011362D0
NO20011362D0 NO20011362A NO20011362A NO20011362D0 NO 20011362 D0 NO20011362 D0 NO 20011362D0 NO 20011362 A NO20011362 A NO 20011362A NO 20011362 A NO20011362 A NO 20011362A NO 20011362 D0 NO20011362 D0 NO 20011362D0
Authority
NO
Norway
Prior art keywords
algorithm
fast
database searches
sensitive database
sensitive
Prior art date
Application number
NO20011362A
Other languages
English (en)
Inventor
Torbjoern Rognes
Erling Christen Seeberg
Original Assignee
Torbjoern Rognes
Erling Christen Seeberg
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Torbjoern Rognes, Erling Christen Seeberg filed Critical Torbjoern Rognes
Priority to NO20011362A priority Critical patent/NO20011362D0/no
Publication of NO20011362D0 publication Critical patent/NO20011362D0/no
Priority to PCT/NO2002/000041 priority patent/WO2002075636A1/en
Priority to EP02711564A priority patent/EP1410303A1/en
Priority to US10/471,897 priority patent/US20040098203A1/en

Links

Classifications

    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10Sequence alignment; Homology search

Landscapes

  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
NO20011362A 2001-03-16 2001-03-16 Algoritme for hurtige og sensitive databasesøk NO20011362D0 (no)

Priority Applications (4)

Application Number Priority Date Filing Date Title
NO20011362A NO20011362D0 (no) 2001-03-16 2001-03-16 Algoritme for hurtige og sensitive databasesøk
PCT/NO2002/000041 WO2002075636A1 (en) 2001-03-16 2002-01-31 Parallel biological sequence alignments
EP02711564A EP1410303A1 (en) 2001-03-16 2002-01-31 Parallel biological sequence alignments
US10/471,897 US20040098203A1 (en) 2001-03-16 2002-01-31 Parallel biological sequence alignments

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
NO20011362A NO20011362D0 (no) 2001-03-16 2001-03-16 Algoritme for hurtige og sensitive databasesøk

Publications (1)

Publication Number Publication Date
NO20011362D0 true NO20011362D0 (no) 2001-03-16

Family

ID=19912266

Family Applications (1)

Application Number Title Priority Date Filing Date
NO20011362A NO20011362D0 (no) 2001-03-16 2001-03-16 Algoritme for hurtige og sensitive databasesøk

Country Status (4)

Country Link
US (1) US20040098203A1 (no)
EP (1) EP1410303A1 (no)
NO (1) NO20011362D0 (no)
WO (1) WO2002075636A1 (no)

Families Citing this family (15)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20060036374A1 (en) * 2000-07-12 2006-02-16 Debe Derek A Method for determining three-dimensional protein structure from primary protein sequence
US7343249B2 (en) 2005-03-23 2008-03-11 International Business Machines Corporational Vectorization of sequence alignment computation using distance matrix reshaping
US20070038381A1 (en) * 2005-08-09 2007-02-15 Melchior Timothy A Efficient method for alignment of a polypeptide query against a collection of polypeptide subjects
US20080250016A1 (en) * 2007-04-04 2008-10-09 Michael Steven Farrar Optimized smith-waterman search
US9201916B2 (en) * 2012-06-13 2015-12-01 Infosys Limited Method, system, and computer-readable medium for providing a scalable bio-informatics sequence search on cloud
US10691775B2 (en) 2013-01-17 2020-06-23 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US10068054B2 (en) 2013-01-17 2018-09-04 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US9679104B2 (en) 2013-01-17 2017-06-13 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US9792405B2 (en) 2013-01-17 2017-10-17 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US10847251B2 (en) 2013-01-17 2020-11-24 Illumina, Inc. Genomic infrastructure for on-site or cloud-based DNA and RNA processing and analysis
EP3329491A2 (en) 2015-03-23 2018-06-06 Edico Genome Corporation Method and system for genomic visualization
US10068183B1 (en) 2017-02-23 2018-09-04 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on a quantum processing platform
US20170270245A1 (en) 2016-01-11 2017-09-21 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods for performing secondary and/or tertiary processing
US10417229B2 (en) 2017-06-27 2019-09-17 Sap Se Dynamic diagonal search in databases
US11822541B2 (en) * 2021-09-30 2023-11-21 Nvidia Corporation Techniques for storing sub-alignment data when accelerating Smith-Waterman sequence alignments

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5168499A (en) * 1990-05-02 1992-12-01 California Institute Of Technology Fault detection and bypass in a sequence information signal processor
US5701256A (en) * 1995-05-31 1997-12-23 Cold Spring Harbor Laboratory Method and apparatus for biological sequence comparison

Also Published As

Publication number Publication date
US20040098203A1 (en) 2004-05-20
EP1410303A1 (en) 2004-04-21
WO2002075636A1 (en) 2002-09-26

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