NL2032993B1 - Oxidative lactonization of fatty acid derivatives by an oxidoreductase - Google Patents
Oxidative lactonization of fatty acid derivatives by an oxidoreductase Download PDFInfo
- Publication number
- NL2032993B1 NL2032993B1 NL2032993A NL2032993A NL2032993B1 NL 2032993 B1 NL2032993 B1 NL 2032993B1 NL 2032993 A NL2032993 A NL 2032993A NL 2032993 A NL2032993 A NL 2032993A NL 2032993 B1 NL2032993 B1 NL 2032993B1
- Authority
- NL
- Netherlands
- Prior art keywords
- compound
- oxidoreductase
- stage
- amino acid
- peroxide
- Prior art date
Links
- 102000004316 Oxidoreductases Human genes 0.000 title claims abstract description 114
- 108090000854 Oxidoreductases Proteins 0.000 title claims abstract description 114
- 229940053200 antiepileptics fatty acid derivative Drugs 0.000 title description 10
- 238000007273 lactonization reaction Methods 0.000 title description 7
- 230000001590 oxidative effect Effects 0.000 title description 3
- 150000001875 compounds Chemical class 0.000 claims abstract description 116
- 238000000034 method Methods 0.000 claims abstract description 101
- 150000002596 lactones Chemical class 0.000 claims abstract description 65
- 125000004432 carbon atom Chemical group C* 0.000 claims abstract description 51
- 150000002978 peroxides Chemical class 0.000 claims abstract description 33
- 125000000217 alkyl group Chemical group 0.000 claims abstract description 25
- 125000002355 alkine group Chemical group 0.000 claims abstract description 14
- 238000002360 preparation method Methods 0.000 claims abstract description 14
- 150000001336 alkenes Chemical group 0.000 claims abstract description 13
- 238000007363 ring formation reaction Methods 0.000 claims abstract description 13
- 238000006243 chemical reaction Methods 0.000 claims description 71
- MHAJPDPJQMAIIY-UHFFFAOYSA-N Hydrogen peroxide Chemical compound OO MHAJPDPJQMAIIY-UHFFFAOYSA-N 0.000 claims description 30
- 239000000203 mixture Substances 0.000 claims description 18
- 239000003054 catalyst Substances 0.000 claims description 16
- 108010023506 peroxygenase Proteins 0.000 claims description 12
- 238000002864 sequence alignment Methods 0.000 claims description 11
- 239000007791 liquid phase Substances 0.000 claims description 10
- 239000007864 aqueous solution Substances 0.000 claims description 9
- LSXWFXONGKSEMY-UHFFFAOYSA-N di-tert-butyl peroxide Chemical compound CC(C)(C)OOC(C)(C)C LSXWFXONGKSEMY-UHFFFAOYSA-N 0.000 claims description 9
- 239000002253 acid Substances 0.000 claims description 6
- 239000000796 flavoring agent Substances 0.000 claims description 6
- 235000019634 flavors Nutrition 0.000 claims description 6
- 239000003205 fragrance Substances 0.000 claims description 6
- 238000000338 in vitro Methods 0.000 claims description 6
- 239000004615 ingredient Substances 0.000 claims description 5
- 229920000642 polymer Polymers 0.000 claims description 4
- 125000003275 alpha amino acid group Chemical group 0.000 claims 7
- 238000005805 hydroxylation reaction Methods 0.000 abstract description 20
- 230000033444 hydroxylation Effects 0.000 abstract description 17
- 229910052717 sulfur Inorganic materials 0.000 abstract description 8
- 108030000998 Unspecific peroxygenases Proteins 0.000 description 59
- 235000014113 dietary fatty acids Nutrition 0.000 description 46
- 229930195729 fatty acid Natural products 0.000 description 46
- 239000000194 fatty acid Substances 0.000 description 46
- 150000001413 amino acids Chemical group 0.000 description 42
- -1 hydroxy fatty acid Chemical class 0.000 description 31
- 150000004665 fatty acids Chemical class 0.000 description 30
- 108090000623 proteins and genes Proteins 0.000 description 23
- 150000002430 hydrocarbons Chemical group 0.000 description 18
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 17
- 102000004169 proteins and genes Human genes 0.000 description 17
- 102000004190 Enzymes Human genes 0.000 description 16
- 108090000790 Enzymes Proteins 0.000 description 16
- 239000002904 solvent Substances 0.000 description 13
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 12
- 102000003992 Peroxidases Human genes 0.000 description 12
- 229940125904 compound 1 Drugs 0.000 description 12
- 244000045069 Agrocybe aegerita Species 0.000 description 11
- 229910052760 oxygen Inorganic materials 0.000 description 11
- 235000008121 Agrocybe aegerita Nutrition 0.000 description 10
- 230000008569 process Effects 0.000 description 10
- 229940125782 compound 2 Drugs 0.000 description 9
- 150000002148 esters Chemical class 0.000 description 9
- 241001085788 Coprinellus Species 0.000 description 8
- 125000002887 hydroxy group Chemical group [H]O* 0.000 description 8
- 150000001408 amides Chemical class 0.000 description 7
- 150000007970 thio esters Chemical class 0.000 description 7
- KBPLFHHGFOOTCA-UHFFFAOYSA-N 1-Octanol Chemical compound CCCCCCCCO KBPLFHHGFOOTCA-UHFFFAOYSA-N 0.000 description 6
- 241000222532 Agrocybe Species 0.000 description 6
- 108010073997 Bromide peroxidase Proteins 0.000 description 6
- 108010035722 Chloride peroxidase Proteins 0.000 description 6
- 108090000417 Oxygenases Proteins 0.000 description 6
- 102000004020 Oxygenases Human genes 0.000 description 6
- 108700020962 Peroxidase Proteins 0.000 description 6
- QVGXLLKOCUKJST-UHFFFAOYSA-N atomic oxygen Chemical compound [O] QVGXLLKOCUKJST-UHFFFAOYSA-N 0.000 description 6
- 235000019439 ethyl acetate Nutrition 0.000 description 6
- 239000003960 organic solvent Substances 0.000 description 6
- 239000001301 oxygen Substances 0.000 description 6
- 108040007629 peroxidase activity proteins Proteins 0.000 description 6
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 6
- 238000005273 aeration Methods 0.000 description 5
- 230000008901 benefit Effects 0.000 description 5
- 230000015572 biosynthetic process Effects 0.000 description 5
- 238000004519 manufacturing process Methods 0.000 description 5
- 238000002844 melting Methods 0.000 description 5
- 230000008018 melting Effects 0.000 description 5
- 239000000047 product Substances 0.000 description 5
- 229930195734 saturated hydrocarbon Natural products 0.000 description 5
- 239000000243 solution Substances 0.000 description 5
- 239000000758 substrate Substances 0.000 description 5
- 238000003786 synthesis reaction Methods 0.000 description 5
- 229930195735 unsaturated hydrocarbon Natural products 0.000 description 5
- IAZDPXIOMUYVGZ-UHFFFAOYSA-N Dimethylsulphoxide Chemical compound CS(C)=O IAZDPXIOMUYVGZ-UHFFFAOYSA-N 0.000 description 4
- 108090000604 Hydrolases Proteins 0.000 description 4
- 102000004157 Hydrolases Human genes 0.000 description 4
- CSNNHWWHGAXBCP-UHFFFAOYSA-L Magnesium sulfate Chemical compound [Mg+2].[O-][S+2]([O-])([O-])[O-] CSNNHWWHGAXBCP-UHFFFAOYSA-L 0.000 description 4
- 238000007792 addition Methods 0.000 description 4
- 125000004429 atom Chemical group 0.000 description 4
- 230000006870 function Effects 0.000 description 4
- NUKZAGXMHTUAFE-UHFFFAOYSA-N methyl hexanoate Chemical compound CCCCCC(=O)OC NUKZAGXMHTUAFE-UHFFFAOYSA-N 0.000 description 4
- 150000002894 organic compounds Chemical class 0.000 description 4
- 238000007254 oxidation reaction Methods 0.000 description 4
- 125000004430 oxygen atom Chemical group O* 0.000 description 4
- 230000008929 regeneration Effects 0.000 description 4
- 238000011069 regeneration method Methods 0.000 description 4
- 230000002269 spontaneous effect Effects 0.000 description 4
- 239000000126 substance Substances 0.000 description 4
- 241000682855 Aegerita Species 0.000 description 3
- UHOVQNZJYSORNB-UHFFFAOYSA-N Benzene Chemical compound C1=CC=CC=C1 UHOVQNZJYSORNB-UHFFFAOYSA-N 0.000 description 3
- 241001236774 Coprinellus radians Species 0.000 description 3
- 241000000643 Daldinia caldariorum Species 0.000 description 3
- 230000001419 dependent effect Effects 0.000 description 3
- 235000021588 free fatty acids Nutrition 0.000 description 3
- 239000007788 liquid Substances 0.000 description 3
- VLKZOEOYAKHREP-UHFFFAOYSA-N n-Hexane Chemical compound CCCCCC VLKZOEOYAKHREP-UHFFFAOYSA-N 0.000 description 3
- 239000012044 organic layer Substances 0.000 description 3
- 230000009257 reactivity Effects 0.000 description 3
- 230000015227 regulation of liquid surface tension Effects 0.000 description 3
- WBHHMMIMDMUBKC-XLNAKTSKSA-N ricinelaidic acid Chemical compound CCCCCC[C@@H](O)C\C=C\CCCCCCCC(O)=O WBHHMMIMDMUBKC-XLNAKTSKSA-N 0.000 description 3
- 229960003656 ricinoleic acid Drugs 0.000 description 3
- FEUQNCSVHBHROZ-UHFFFAOYSA-N ricinoleic acid Natural products CCCCCCC(O[Si](C)(C)C)CC=CCCCCCCCC(=O)OC FEUQNCSVHBHROZ-UHFFFAOYSA-N 0.000 description 3
- 229920006395 saturated elastomer Polymers 0.000 description 3
- 238000012546 transfer Methods 0.000 description 3
- XDOFQFKRPWOURC-UHFFFAOYSA-N 16-methylheptadecanoic acid Chemical compound CC(C)CCCCCCCCCCCCCCC(O)=O XDOFQFKRPWOURC-UHFFFAOYSA-N 0.000 description 2
- CPELXLSAUQHCOX-UHFFFAOYSA-M Bromide Chemical compound [Br-] CPELXLSAUQHCOX-UHFFFAOYSA-M 0.000 description 2
- 241000002309 Collariella virescens Species 0.000 description 2
- 244000251987 Coprinus macrorhizus Species 0.000 description 2
- 235000001673 Coprinus macrorhizus Nutrition 0.000 description 2
- 244000241257 Cucumis melo Species 0.000 description 2
- 235000009842 Cucumis melo Nutrition 0.000 description 2
- 241000588724 Escherichia coli Species 0.000 description 2
- 241000282414 Homo sapiens Species 0.000 description 2
- 101000886098 Homo sapiens Rho guanine nucleotide exchange factor 40 Proteins 0.000 description 2
- 101000836397 Homo sapiens SEC14 domain and spectrin repeat-containing protein 1 Proteins 0.000 description 2
- 241001065349 Marasmius rotula Species 0.000 description 2
- FLIACVVOZYBSBS-UHFFFAOYSA-N Methyl palmitate Chemical compound CCCCCCCCCCCCCCCC(=O)OC FLIACVVOZYBSBS-UHFFFAOYSA-N 0.000 description 2
- 108010074633 Mixed Function Oxygenases Proteins 0.000 description 2
- 102000008109 Mixed Function Oxygenases Human genes 0.000 description 2
- LRHPLDYGYMQRHN-UHFFFAOYSA-N N-Butanol Chemical compound CCCCO LRHPLDYGYMQRHN-UHFFFAOYSA-N 0.000 description 2
- IMNFDUFMRHMDMM-UHFFFAOYSA-N N-Heptane Chemical compound CCCCCCC IMNFDUFMRHMDMM-UHFFFAOYSA-N 0.000 description 2
- 108010045510 NADPH-Ferrihemoprotein Reductase Proteins 0.000 description 2
- OFBQJSOFQDEBGM-UHFFFAOYSA-N Pentane Chemical compound CCCCC OFBQJSOFQDEBGM-UHFFFAOYSA-N 0.000 description 2
- 102100027289 SEC14 domain and spectrin repeat-containing protein 1 Human genes 0.000 description 2
- 241000160715 Sulfolobus tokodaii Species 0.000 description 2
- XJLXINKUBYWONI-DQQFMEOOSA-N [[(2r,3r,4r,5r)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2s,3r,4s,5s)-5-(3-carbamoylpyridin-1-ium-1-yl)-3,4-dihydroxyoxolan-2-yl]methyl phosphate Chemical compound NC(=O)C1=CC=C[N+]([C@@H]2[C@H]([C@@H](O)[C@H](COP([O-])(=O)OP(O)(=O)OC[C@@H]3[C@H]([C@@H](OP(O)(O)=O)[C@@H](O3)N3C4=NC=NC(N)=C4N=C3)O)O2)O)=C1 XJLXINKUBYWONI-DQQFMEOOSA-N 0.000 description 2
- 125000002009 alkene group Chemical group 0.000 description 2
- 239000012472 biological sample Substances 0.000 description 2
- 229910052799 carbon Inorganic materials 0.000 description 2
- 238000012217 deletion Methods 0.000 description 2
- 230000037430 deletion Effects 0.000 description 2
- 238000002474 experimental method Methods 0.000 description 2
- 238000000855 fermentation Methods 0.000 description 2
- 230000004151 fermentation Effects 0.000 description 2
- 235000013305 food Nutrition 0.000 description 2
- 238000004817 gas chromatography Methods 0.000 description 2
- 150000003278 haem Chemical class 0.000 description 2
- 125000005842 heteroatom Chemical group 0.000 description 2
- 125000004435 hydrogen atom Chemical group [H]* 0.000 description 2
- XMBWDFGMSWQBCA-UHFFFAOYSA-N hydrogen iodide Chemical compound I XMBWDFGMSWQBCA-UHFFFAOYSA-N 0.000 description 2
- 229910052943 magnesium sulfate Inorganic materials 0.000 description 2
- 235000019341 magnesium sulphate Nutrition 0.000 description 2
- 230000014759 maintenance of location Effects 0.000 description 2
- 239000011159 matrix material Substances 0.000 description 2
- YRHYCMZPEVDGFQ-UHFFFAOYSA-N methyl decanoate Chemical compound CCCCCCCCCC(=O)OC YRHYCMZPEVDGFQ-UHFFFAOYSA-N 0.000 description 2
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 description 2
- 229930027945 nicotinamide-adenine dinucleotide Natural products 0.000 description 2
- WWZKQHOCKIZLMA-UHFFFAOYSA-N octanoic acid Chemical compound CCCCCCCC(O)=O WWZKQHOCKIZLMA-UHFFFAOYSA-N 0.000 description 2
- 239000012074 organic phase Substances 0.000 description 2
- 230000003647 oxidation Effects 0.000 description 2
- 230000004853 protein function Effects 0.000 description 2
- 238000006479 redox reaction Methods 0.000 description 2
- 238000011160 research Methods 0.000 description 2
- 241000894007 species Species 0.000 description 2
- 238000006467 substitution reaction Methods 0.000 description 2
- 239000006228 supernatant Substances 0.000 description 2
- 239000004094 surface-active agent Substances 0.000 description 2
- LDVVTQMJQSCDMK-UHFFFAOYSA-N 1,3-dihydroxypropan-2-yl formate Chemical class OCC(CO)OC=O LDVVTQMJQSCDMK-UHFFFAOYSA-N 0.000 description 1
- FRIBMENBGGCKPD-UHFFFAOYSA-N 3-(2,3-dimethoxyphenyl)prop-2-enal Chemical compound COC1=CC=CC(C=CC=O)=C1OC FRIBMENBGGCKPD-UHFFFAOYSA-N 0.000 description 1
- JLLYLQLDYORLBB-UHFFFAOYSA-N 5-bromo-n-methylthiophene-2-sulfonamide Chemical compound CNS(=O)(=O)C1=CC=C(Br)S1 JLLYLQLDYORLBB-UHFFFAOYSA-N 0.000 description 1
- GHBSPIPJMLAMEP-UHFFFAOYSA-N 6-pentyloxan-2-one Chemical compound CCCCCC1CCCC(=O)O1 GHBSPIPJMLAMEP-UHFFFAOYSA-N 0.000 description 1
- 241001424972 Acericola Species 0.000 description 1
- 244000205574 Acorus calamus Species 0.000 description 1
- 235000006480 Acorus calamus Nutrition 0.000 description 1
- 241000256118 Aedes aegypti Species 0.000 description 1
- 241001660916 Agrocybe dura Species 0.000 description 1
- 241001660913 Agrocybe erebia Species 0.000 description 1
- 241000598821 Agrocybe parasitica Species 0.000 description 1
- 241001236191 Agrocybe praecox Species 0.000 description 1
- 241000952820 Agrocybe putaminum Species 0.000 description 1
- 241001660904 Agrocybe vervacti Species 0.000 description 1
- 240000002234 Allium sativum Species 0.000 description 1
- 235000011446 Amygdalus persica Nutrition 0.000 description 1
- 102000013971 Apolipoproteins L Human genes 0.000 description 1
- 108010025643 Apolipoproteins L Proteins 0.000 description 1
- 241000219194 Arabidopsis Species 0.000 description 1
- 244000105624 Arachis hypogaea Species 0.000 description 1
- 235000010777 Arachis hypogaea Nutrition 0.000 description 1
- 235000011330 Armoracia rusticana Nutrition 0.000 description 1
- 240000003291 Armoracia rusticana Species 0.000 description 1
- 241000222211 Arthromyces Species 0.000 description 1
- 241001494508 Arundo donax Species 0.000 description 1
- 241000512259 Ascophyllum nodosum Species 0.000 description 1
- 241000228245 Aspergillus niger Species 0.000 description 1
- 101001074429 Bacillus subtilis (strain 168) Polyketide biosynthesis acyltransferase homolog PksD Proteins 0.000 description 1
- 101000936617 Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / FZB42) Polyketide biosynthesis acyltransferase homolog BaeD Proteins 0.000 description 1
- 238000006220 Baeyer-Villiger oxidation reaction Methods 0.000 description 1
- 241000736281 Bazzania trilobata Species 0.000 description 1
- 235000021533 Beta vulgaris Nutrition 0.000 description 1
- 241000335053 Beta vulgaris Species 0.000 description 1
- 241000222478 Bjerkandera adusta Species 0.000 description 1
- 241000283690 Bos taurus Species 0.000 description 1
- 235000011303 Brassica alboglabra Nutrition 0.000 description 1
- 240000002791 Brassica napus Species 0.000 description 1
- 235000011293 Brassica napus Nutrition 0.000 description 1
- 240000007124 Brassica oleracea Species 0.000 description 1
- 235000011302 Brassica oleracea Nutrition 0.000 description 1
- 240000008100 Brassica rapa Species 0.000 description 1
- 235000011292 Brassica rapa Nutrition 0.000 description 1
- 239000007848 Bronsted acid Substances 0.000 description 1
- 241000030939 Bubalus bubalis Species 0.000 description 1
- 235000014644 Butia capitata Nutrition 0.000 description 1
- 240000007532 Butia capitata Species 0.000 description 1
- 244000052707 Camellia sinensis Species 0.000 description 1
- 241000283705 Capra hircus Species 0.000 description 1
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 description 1
- 102100035882 Catalase Human genes 0.000 description 1
- 108010053835 Catalase Proteins 0.000 description 1
- 235000013164 Chamaerops excelsa Nutrition 0.000 description 1
- 240000000230 Chromolaena odorata Species 0.000 description 1
- 241000220455 Cicer Species 0.000 description 1
- 235000010521 Cicer Nutrition 0.000 description 1
- 241000132674 Coprinellus amphithallus Species 0.000 description 1
- 241000407628 Coprinellus angulatus Species 0.000 description 1
- 241001578219 Coprinellus aureogranulatus Species 0.000 description 1
- 241000132695 Coprinellus bisporiger Species 0.000 description 1
- 241001236116 Coprinellus bisporus Species 0.000 description 1
- 241001236114 Coprinellus callinus Species 0.000 description 1
- 241000222513 Coprinellus congregatus Species 0.000 description 1
- 241001236841 Coprinellus curtus Species 0.000 description 1
- 241000347113 Coprinellus deliquescens Species 0.000 description 1
- 241001161366 Coprinellus deminutus Species 0.000 description 1
- 241001236839 Coprinellus disseminatus Species 0.000 description 1
- 241001236838 Coprinellus domesticus Species 0.000 description 1
- 241001484757 Coprinellus ellisii Species 0.000 description 1
- 241001236837 Coprinellus flocculosus Species 0.000 description 1
- 241001236833 Coprinellus heptemerus Species 0.000 description 1
- 241001236831 Coprinellus heterosetulosus Species 0.000 description 1
- 241001569919 Coprinellus hiascens Species 0.000 description 1
- 241001199392 Coprinellus marculentus Species 0.000 description 1
- 241000947258 Coprinellus mitrinodulisporus Species 0.000 description 1
- 241001233012 Coprinellus pellucidus Species 0.000 description 1
- 241000132711 Coprinellus plagioporus Species 0.000 description 1
- 241001569962 Coprinellus sassii Species 0.000 description 1
- 241000132675 Coprinellus sclerocystidiosus Species 0.000 description 1
- 241000132686 Coprinellus subdisseminatus Species 0.000 description 1
- 241000132688 Coprinellus subimpatiens Species 0.000 description 1
- 241001232974 Coprinellus subpurpureus Species 0.000 description 1
- 241000132656 Coprinellus velatopruinatus Species 0.000 description 1
- 241001491621 Corallina officinalis Species 0.000 description 1
- 241001312951 Corallina pilulifera Species 0.000 description 1
- 235000003198 Cynara Nutrition 0.000 description 1
- 241000208947 Cynara Species 0.000 description 1
- 108010015742 Cytochrome P-450 Enzyme System Proteins 0.000 description 1
- 102000002004 Cytochrome P-450 Enzyme System Human genes 0.000 description 1
- 102000018832 Cytochromes Human genes 0.000 description 1
- 108010052832 Cytochromes Proteins 0.000 description 1
- 241000143442 Daldinia Species 0.000 description 1
- 241000122827 Delisea pulchra Species 0.000 description 1
- 102000016680 Dioxygenases Human genes 0.000 description 1
- 108010028143 Dioxygenases Proteins 0.000 description 1
- 108700033069 EC 1.97.-.- Proteins 0.000 description 1
- 241000439005 Ecklonia stolonifera Species 0.000 description 1
- 240000003133 Elaeis guineensis Species 0.000 description 1
- 235000001950 Elaeis guineensis Nutrition 0.000 description 1
- 241000589566 Elizabethkingia meningoseptica Species 0.000 description 1
- 108090000371 Esterases Proteins 0.000 description 1
- 241000093828 Euphorbia characias subsp. characias Species 0.000 description 1
- 235000016623 Fragaria vesca Nutrition 0.000 description 1
- 244000307700 Fragaria vesca Species 0.000 description 1
- 235000011363 Fragaria x ananassa Nutrition 0.000 description 1
- 240000009088 Fragaria x ananassa Species 0.000 description 1
- 241000195478 Fucus distichus Species 0.000 description 1
- 108010058643 Fungal Proteins Proteins 0.000 description 1
- 241000233866 Fungi Species 0.000 description 1
- 235000010469 Glycine max Nutrition 0.000 description 1
- 244000068988 Glycine max Species 0.000 description 1
- 241000703920 Gracilaria changii Species 0.000 description 1
- 235000003222 Helianthus annuus Nutrition 0.000 description 1
- 244000020551 Helianthus annuus Species 0.000 description 1
- 235000007340 Hordeum vulgare Nutrition 0.000 description 1
- 240000005979 Hordeum vulgare Species 0.000 description 1
- 235000021506 Ipomoea Nutrition 0.000 description 1
- 241000207783 Ipomoea Species 0.000 description 1
- 244000017020 Ipomoea batatas Species 0.000 description 1
- 235000002678 Ipomoea batatas Nutrition 0.000 description 1
- 240000008740 Jubaea chilensis Species 0.000 description 1
- 235000014622 Jubaea chilensis Nutrition 0.000 description 1
- 241000186984 Kitasatospora aureofaciens Species 0.000 description 1
- 241000235058 Komagataella pastoris Species 0.000 description 1
- 241000296380 Laminaria hyperborea Species 0.000 description 1
- 240000005010 Landoltia punctata Species 0.000 description 1
- 241001003097 Leptogium saturninum Species 0.000 description 1
- 241000222118 Leptoxyphium fumago Species 0.000 description 1
- 239000002841 Lewis acid Substances 0.000 description 1
- 102000004882 Lipase Human genes 0.000 description 1
- 108090001060 Lipase Proteins 0.000 description 1
- 239000004367 Lipase Substances 0.000 description 1
- 235000002262 Lycopersicon Nutrition 0.000 description 1
- 241000227653 Lycopersicon Species 0.000 description 1
- 241001491705 Macrocystis pyrifera Species 0.000 description 1
- 244000081841 Malus domestica Species 0.000 description 1
- 235000011430 Malus pumila Nutrition 0.000 description 1
- 240000007707 Mentha arvensis Species 0.000 description 1
- 235000018978 Mentha arvensis Nutrition 0.000 description 1
- 235000016278 Mentha canadensis Nutrition 0.000 description 1
- 239000005640 Methyl decanoate Substances 0.000 description 1
- BZLVMXJERCGZMT-UHFFFAOYSA-N Methyl tert-butyl ether Chemical compound COC(C)(C)C BZLVMXJERCGZMT-UHFFFAOYSA-N 0.000 description 1
- 244000302512 Momordica charantia Species 0.000 description 1
- 235000009811 Momordica charantia Nutrition 0.000 description 1
- 241000699660 Mus musculus Species 0.000 description 1
- 240000008790 Musa x paradisiaca Species 0.000 description 1
- 235000018290 Musa x paradisiaca Nutrition 0.000 description 1
- 241000187479 Mycobacterium tuberculosis Species 0.000 description 1
- 241000221961 Neurospora crassa Species 0.000 description 1
- 241000208136 Nicotiana sylvestris Species 0.000 description 1
- 235000002637 Nicotiana tabacum Nutrition 0.000 description 1
- 244000061176 Nicotiana tabacum Species 0.000 description 1
- 241000392192 Ochtodes secundiramea Species 0.000 description 1
- 235000007164 Oryza sativa Nutrition 0.000 description 1
- 240000007594 Oryza sativa Species 0.000 description 1
- 101150053185 P450 gene Proteins 0.000 description 1
- 241001494479 Pecora Species 0.000 description 1
- 241000208181 Pelargonium Species 0.000 description 1
- 235000017927 Pelargonium graveolens Nutrition 0.000 description 1
- 244000270673 Pelargonium graveolens Species 0.000 description 1
- 108091005804 Peptidases Proteins 0.000 description 1
- 241000223960 Plasmodium falciparum Species 0.000 description 1
- 235000007685 Pleurotus columbinus Nutrition 0.000 description 1
- 244000252132 Pleurotus eryngii Species 0.000 description 1
- 235000001681 Pleurotus eryngii Nutrition 0.000 description 1
- 240000001462 Pleurotus ostreatus Species 0.000 description 1
- 235000001603 Pleurotus ostreatus Nutrition 0.000 description 1
- 239000004365 Protease Substances 0.000 description 1
- 240000005809 Prunus persica Species 0.000 description 1
- 241000589540 Pseudomonas fluorescens Species 0.000 description 1
- 241000589776 Pseudomonas putida Species 0.000 description 1
- 241000205156 Pyrococcus furiosus Species 0.000 description 1
- 235000019057 Raphanus caudatus Nutrition 0.000 description 1
- 244000088415 Raphanus sativus Species 0.000 description 1
- 235000011380 Raphanus sativus Nutrition 0.000 description 1
- 102000007056 Recombinant Fusion Proteins Human genes 0.000 description 1
- 108010008281 Recombinant Fusion Proteins Proteins 0.000 description 1
- 102100037486 Reverse transcriptase/ribonuclease H Human genes 0.000 description 1
- 235000006595 Roystonea elata Nutrition 0.000 description 1
- 240000007186 Roystonea regia Species 0.000 description 1
- 241000379619 Ruegeria Species 0.000 description 1
- 235000002924 Sabal minor Nutrition 0.000 description 1
- 240000000296 Sabal minor Species 0.000 description 1
- 241000983746 Saccharina latissima Species 0.000 description 1
- 240000004808 Saccharomyces cerevisiae Species 0.000 description 1
- 235000004517 Sclerocarya birrea Nutrition 0.000 description 1
- 240000003935 Sclerocarya birrea Species 0.000 description 1
- 235000017089 Scutellaria baicalensis Nutrition 0.000 description 1
- 240000004534 Scutellaria baicalensis Species 0.000 description 1
- 241000520349 Senecio squalidus Species 0.000 description 1
- 244000275012 Sesbania cannabina Species 0.000 description 1
- 235000002597 Solanum melongena Nutrition 0.000 description 1
- 244000061458 Solanum melongena Species 0.000 description 1
- 240000006394 Sorghum bicolor Species 0.000 description 1
- 235000007230 Sorghum bicolor Nutrition 0.000 description 1
- 241000187747 Streptomyces Species 0.000 description 1
- 241000187392 Streptomyces griseus Species 0.000 description 1
- 241000187094 Streptomyces thermoviolaceus Species 0.000 description 1
- 241000531819 Streptomyces venezuelae Species 0.000 description 1
- 241000205098 Sulfolobus acidocaldarius Species 0.000 description 1
- 241000282898 Sus scrofa Species 0.000 description 1
- 241000192560 Synechococcus sp. Species 0.000 description 1
- 235000006468 Thea sinensis Nutrition 0.000 description 1
- 244000037614 Trachycarpus fortunei Species 0.000 description 1
- 244000098338 Triticum aestivum Species 0.000 description 1
- 235000014787 Vitis vinifera Nutrition 0.000 description 1
- 240000006365 Vitis vinifera Species 0.000 description 1
- 235000006574 Washingtonia filifera Nutrition 0.000 description 1
- 244000208876 Washingtonia filifera Species 0.000 description 1
- 102100033220 Xanthine oxidase Human genes 0.000 description 1
- 108010093894 Xanthine oxidase Proteins 0.000 description 1
- 241000607477 Yersinia pseudotuberculosis Species 0.000 description 1
- 241000192015 [Candida] sorbophila Species 0.000 description 1
- 150000007513 acids Chemical class 0.000 description 1
- OBETXYAYXDNJHR-UHFFFAOYSA-N alpha-ethylcaproic acid Natural products CCCCC(CC)C(O)=O OBETXYAYXDNJHR-UHFFFAOYSA-N 0.000 description 1
- 238000004458 analytical method Methods 0.000 description 1
- 230000002210 biocatalytic effect Effects 0.000 description 1
- 230000008827 biological function Effects 0.000 description 1
- 239000000872 buffer Substances 0.000 description 1
- 235000014121 butter Nutrition 0.000 description 1
- 235000013351 cheese Nutrition 0.000 description 1
- 238000012824 chemical production Methods 0.000 description 1
- 238000004590 computer program Methods 0.000 description 1
- 230000021615 conjugation Effects 0.000 description 1
- 238000007796 conventional method Methods 0.000 description 1
- 238000012258 culturing Methods 0.000 description 1
- 125000004122 cyclic group Chemical group 0.000 description 1
- WJTCGQSWYFHTAC-UHFFFAOYSA-N cyclooctane Chemical compound C1CCCCCCC1 WJTCGQSWYFHTAC-UHFFFAOYSA-N 0.000 description 1
- 239000004914 cyclooctane Substances 0.000 description 1
- 238000004925 denaturation Methods 0.000 description 1
- 230000036425 denaturation Effects 0.000 description 1
- 208000002925 dental caries Diseases 0.000 description 1
- 238000013461 design Methods 0.000 description 1
- 238000011161 development Methods 0.000 description 1
- 230000018109 developmental process Effects 0.000 description 1
- 239000000539 dimer Substances 0.000 description 1
- 238000006471 dimerization reaction Methods 0.000 description 1
- 235000013399 edible fruits Nutrition 0.000 description 1
- 230000000694 effects Effects 0.000 description 1
- 230000002255 enzymatic effect Effects 0.000 description 1
- 238000006735 epoxidation reaction Methods 0.000 description 1
- 150000002118 epoxides Chemical class 0.000 description 1
- 238000005886 esterification reaction Methods 0.000 description 1
- 125000004494 ethyl ester group Chemical group 0.000 description 1
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 1
- 235000019387 fatty acid methyl ester Nutrition 0.000 description 1
- 230000002349 favourable effect Effects 0.000 description 1
- 238000005187 foaming Methods 0.000 description 1
- 235000012041 food component Nutrition 0.000 description 1
- 239000005417 food ingredient Substances 0.000 description 1
- 238000005755 formation reaction Methods 0.000 description 1
- 125000000524 functional group Chemical group 0.000 description 1
- 235000004611 garlic Nutrition 0.000 description 1
- 238000002290 gas chromatography-mass spectrometry Methods 0.000 description 1
- 230000014509 gene expression Effects 0.000 description 1
- 235000003869 genetically modified organism Nutrition 0.000 description 1
- 235000002532 grape seed extract Nutrition 0.000 description 1
- 239000000413 hydrolysate Substances 0.000 description 1
- 150000002432 hydroperoxides Chemical class 0.000 description 1
- 230000002209 hydrophobic effect Effects 0.000 description 1
- 238000001727 in vivo Methods 0.000 description 1
- 230000002779 inactivation Effects 0.000 description 1
- 229910052500 inorganic mineral Inorganic materials 0.000 description 1
- 150000002576 ketones Chemical class 0.000 description 1
- 150000007517 lewis acids Chemical class 0.000 description 1
- 235000019421 lipase Nutrition 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 229910052751 metal Chemical class 0.000 description 1
- 239000002184 metal Chemical class 0.000 description 1
- GAHDIGHBYWYMPW-UHFFFAOYSA-N methyl 4-hydroxyhexanoate Chemical compound CCC(O)CCC(=O)OC GAHDIGHBYWYMPW-UHFFFAOYSA-N 0.000 description 1
- KBKUVMOUCKJDBE-UHFFFAOYSA-N methyl 5-hydroxyhexanoate Chemical compound COC(=O)CCCC(C)O KBKUVMOUCKJDBE-UHFFFAOYSA-N 0.000 description 1
- 150000004702 methyl esters Chemical class 0.000 description 1
- MGJXBDMLVWIYOQ-UHFFFAOYSA-N methylazanide Chemical compound [NH-]C MGJXBDMLVWIYOQ-UHFFFAOYSA-N 0.000 description 1
- 230000000813 microbial effect Effects 0.000 description 1
- 244000005700 microbiome Species 0.000 description 1
- 239000011707 mineral Substances 0.000 description 1
- 235000010755 mineral Nutrition 0.000 description 1
- 239000000178 monomer Substances 0.000 description 1
- 238000005817 monooxygenase reaction Methods 0.000 description 1
- BOPGDPNILDQYTO-NNYOXOHSSA-N nicotinamide-adenine dinucleotide Chemical compound C1=CCC(C(=O)N)=CN1[C@H]1[C@H](O)[C@H](O)[C@@H](COP(O)(=O)OP(O)(=O)OC[C@@H]2[C@H]([C@@H](O)[C@@H](O2)N2C3=NC=NC(N)=C3N=C2)O)O1 BOPGDPNILDQYTO-NNYOXOHSSA-N 0.000 description 1
- 239000003921 oil Substances 0.000 description 1
- 238000005580 one pot reaction Methods 0.000 description 1
- 238000002888 pairwise sequence alignment Methods 0.000 description 1
- 229920001610 polycaprolactone Polymers 0.000 description 1
- 239000004632 polycaprolactone Substances 0.000 description 1
- 229920000728 polyester Polymers 0.000 description 1
- 239000002244 precipitate Substances 0.000 description 1
- 239000002243 precursor Substances 0.000 description 1
- 238000000164 protein isolation Methods 0.000 description 1
- 238000001742 protein purification Methods 0.000 description 1
- 238000012552 review Methods 0.000 description 1
- 238000007151 ring opening polymerisation reaction Methods 0.000 description 1
- 150000003839 salts Chemical class 0.000 description 1
- 150000004671 saturated fatty acids Chemical class 0.000 description 1
- 239000012064 sodium phosphate buffer Substances 0.000 description 1
- 238000001228 spectrum Methods 0.000 description 1
- 150000003440 styrenes Chemical class 0.000 description 1
- 150000003457 sulfones Chemical class 0.000 description 1
- 150000003462 sulfoxides Chemical class 0.000 description 1
- 238000001308 synthesis method Methods 0.000 description 1
- 150000003568 thioethers Chemical class 0.000 description 1
- 230000014616 translation Effects 0.000 description 1
- 150000003626 triacylglycerols Chemical class 0.000 description 1
- UFTFJSFQGQCHQW-UHFFFAOYSA-N triformin Chemical compound O=COCC(OC=O)COC=O UFTFJSFQGQCHQW-UHFFFAOYSA-N 0.000 description 1
- 125000005457 triglyceride group Chemical group 0.000 description 1
- 239000013638 trimer Substances 0.000 description 1
- 238000005829 trimerization reaction Methods 0.000 description 1
- AQLJVWUFPCUVLO-UHFFFAOYSA-N urea hydrogen peroxide Chemical compound OO.NC(N)=O AQLJVWUFPCUVLO-UHFFFAOYSA-N 0.000 description 1
- 229910052720 vanadium Inorganic materials 0.000 description 1
- LEONUFNNVUYDNQ-UHFFFAOYSA-N vanadium atom Chemical compound [V] LEONUFNNVUYDNQ-UHFFFAOYSA-N 0.000 description 1
- 239000010457 zeolite Substances 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P7/00—Preparation of oxygen-containing organic compounds
- C12P7/40—Preparation of oxygen-containing organic compounds containing a carboxyl group including Peroxycarboxylic acids
- C12P7/42—Hydroxy-carboxylic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/0004—Oxidoreductases (1.)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/0004—Oxidoreductases (1.)
- C12N9/0065—Oxidoreductases (1.) acting on hydrogen peroxide as acceptor (1.11)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P17/00—Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
- C12P17/02—Oxygen as only ring hetero atoms
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P17/00—Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
- C12P17/02—Oxygen as only ring hetero atoms
- C12P17/04—Oxygen as only ring hetero atoms containing a five-membered hetero ring, e.g. griseofulvin, vitamin C
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P17/00—Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
- C12P17/02—Oxygen as only ring hetero atoms
- C12P17/06—Oxygen as only ring hetero atoms containing a six-membered hetero ring, e.g. fluorescein
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P7/00—Preparation of oxygen-containing organic compounds
- C12P7/62—Carboxylic acid esters
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y111/00—Oxidoreductases acting on a peroxide as acceptor (1.11)
- C12Y111/01—Peroxidases (1.11.1)
- C12Y111/01002—NADPH peroxidase (1.11.1.2)
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Microbiology (AREA)
- Biotechnology (AREA)
- General Chemical & Material Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Medicinal Chemistry (AREA)
- Molecular Biology (AREA)
- Biomedical Technology (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
Abstract
The invention provides a method for providing a lactone (10), wherein the method comprises: (i) a preparation stage comprising providing a first compound (1) according to formula (I) wherein X is selected from the group comprising 0, NH, and S, wherein R1 is selected from alkyl groups comprising 1-10 C atoms, and wherein R2 is selected from alkyl, alkene or alkyne groups comprising 5-25 C atoms, (ii) a first stage comprising eXposing the first compound (1) to an oxidoreductase (3) in the presence of a peroxide (4), wherein the oxidoreductase (3) is configured to catalyze hydroxylation of the first compound (1) at position 3, 4, 5, and/or 6 to provide a second compound (2), and (iii) a second stage comprising providing the lactone (10) from the second compound (2) via a ring-formation reaction.
Description
Oxidative lactonization of fatty acid derivatives by an oxidoreductase
The invention relates to a method to provide a lactone by exposing a fatty acid derivative to an oxidoreductase. The invention also relates to use of the lactone obtainable by such method.
Methods for providing lactones are known in the art. US2005130278A1, for instance, relates to a method for producing a lactone comprising culturing Candida sorbophila in a medium containing at least one selected from the group consisting of a hydroxy fatty acid, a hydroxy fatty acid derivative, and a hydrolysate of a hydroxy fatty acid derivative and recovering the produced lactone from the medium.
Lactones are a group of organic molecules that comprise a cyclic ester. Naturally occurring lactones mainly comprise saturated and unsaturated y- and d-lactones. y-Lactones and d-lactones comprise a five-membered ring and a six-membered ring, respectively, which are the most stable structures for lactones. However, also other lactones exist. Naturally occurring lactones contribute to the aroma of foods such as fruits, cheese, and butter. Hence, lactones may be used as flavors and fragrances. In other applications, lactones may be used for the synthesis of polyester precursors.
Existing methods for lactone synthesis from (natural) fatty acids may e.g. comprise a four step aerobic-oxidation of ricinoleic acid, followed by a ring closing reaction.
Alternative methods comprise fermentation by yeast or fungi. These methods may provide relatively low yields and titers.
The prior art may further describe complex industrial synthesis methods requiring a large number of steps, specialized equipment, harmful chemicals, and/or prohibited chemicals.
The prior art may further describe chemical production systems based on non- renewable feedstocks.
The prior art may further describe enzymatic processes, such as based on a P450 monooxygenase, requiring one or more of cofactor regeneration systems, external aeration,
and/or specific solvent conditions. Such specific requirements may lead to complex and expensive reaction processes. Further, such prior art processes may be relatively inefficient in terms of reaction rate and/or yield.
The prior art may further describe processes based on free fatty acids and/or natural oils, which may have solubility issues and may have surfactant activity leading to enzyme inactivation and foaming issues.
It appears desirable to produce lactones in a scalable and economic fashion in a simple and efficient process, and based on renewable feedstocks.
Hence, it is an aspect of the invention to provide an alternative method for providing a lactone, which preferably further at least partly obviates one or more of above- described drawbacks. The present invention may have as object to overcome or ameliorate at least one of the disadvantages of the prior art, or to provide a useful alternative.
According to a first aspect, the invention provides a method for providing a lactone. Especially, the method comprises one or more of a preparation stage, a first stage, and a second stage. The preparation stage may comprise providing a first compound according to formula (I):
ON © 0
In embodiments, X in the first compound may be selected from the group comprising O, NH, and S. Ry; may in embodiments be selected from alkyl groups comprising 1-10 C atoms. In specific embodiments, R>» may comprise 5-25 C atoms. The first stage may in embodiments comprise exposing the first compound to an oxidoreductase, especially in the presence of a peroxide. The oxidoreductase may especially be selected from the group comprising oxygenases, peroxygenases, oxidases, and peroxidases. In embodiments, the oxidoreductase may comprise an unspecific peroxygenase. In embodiments, the oxidoreductase may be configured to catalyze a hydroxylation of the first compound at position 3, 4, 5, and/or 6 to provide a second compound, especially at position 4 or 5. The second stage may especially comprise providing the lactone from the second compound via a spontaneous or catalyzed ring- formation reaction.
Hence, in specific embodiments, the invention provides a method for providing a lactone, wherein the method comprises: (1) a preparation stage comprising providing a first compound according to formula (I) wherein X is selected from the group comprising O, NH, and S, wherein R; is selected from alkyl groups comprising 1-10 C atoms, and wherein R: is selected from alkyl, alkene and alkyne groups comprising 5-25 C atoms; (ii) a first stage comprising exposing the first compound to an oxidoreductase in the presence of a peroxide, wherein the oxidoreductase is configured to catalyze hydroxylation of the first compound at position 3, 4, 5, and/or 6 to provide a second compound; and (iii) a second stage comprising providing the lactone from the second compound via a ring-formation reaction.
In other words, the method of the invention may use an oxidoreductase to hydroxylate a fatty acid derivative, and may subsequently form a lactone from the hydroxylated fatty acid derivative in a spontaneous or catalyzed ring-forming reaction.
A benefit of the invention may be that the invention may provide a simplified process for lactone synthesis. For instance, in embodiments, such as in embodiments wherein the oxidoreductase comprises an unspecific peroxygenase, the invention may not require using cofactors and/or regeneration systems and/or external aeration. Also, the use of fatty acid derivatives may have several advantages compared to the use of free fatty acids. Fatty acid derivatives may have a higher solubility in organic media, may have a reduced, such as no, surfactant activity, may have a higher reactivity in the lactonization process and may be easier in handling than free fatty acids.
The method of the invention may further provide a scalable and economic production of lactones, such as y-decalactone and ô-decalactone having a higher yield compared to established methods such as fermentation methods. Especially, the method may in embodiments be performed as a one-step reaction, which may be much simpler compared to e.g. the four step aerobic-oxidation of ricinoleic acid, followed by a ring closing reaction.
Compared to chemical synthesis, the reaction conditions may be more environmentally friendly.
In this way lactones may be provided in a more simple and efficient synthesis compared to established biocatalytic methods. Especially, additional cofactors and regeneration systems may be avoided. Further, the method of the invention may be independent from external aeration. In specific embodiments, the method may even be performed under non- aqueous conditions. Surprisingly, the inventors discovered that hydroxylation of a fatty acid derivative by an oxidoreductase provided similar conversion efficiencies as for fatty acids.
Since the fatty acid derivatives may have a higher solubility in organic media and/or no surfactant activity and/or the corresponding second compounds may have a higher reactivity in the lactonization process, the use of a fatty acid derivative (such as a fatty acid ester, a fatty acid amide, and a fatty acid thioester) appears favorable over fatty acids.
Hence, the invention may provide a method for providing a lactone. The term lactone may herein refer to a cyclic carboxylic ester. In embodiments, the lactone may be formed from the first compound according to formula (Ib): fs Ni
PY PY © a»
Formula (Ib) depicts a more detailed embodiment of the first compound according to Formula (I) wherein R; essentially consists of -R4—C(Rs)-Rs. In embodiments, R4 comprises 1-4 C atoms. Rs may especially be selected from alkyl, alkene and alkyne groups comprising 1-4 C atoms. Rs may essentially comprise R: (as defined below) minus R4-C-Rs. In embodiments, Rs may be -H. In alternative embodiments, Rs may be selected from alkyl, alkene and alkyne groups. Rs may in embodiments comprise one or more heteroatoms such as a bromide, a iodide, and/or a hydroxy group. In further embodiments, Rs may be -H. In alternative embodiments, Rs may be selected from alkyl, alkene and alkyne groups. In yet further embodiments, Rs may comprise one or more heteroatoms such as a bromide, a iodide, and/or a hydroxy group.
The first compound may be converted into the second compound according to formula (II): = TI
A A ol ow
The second compound may especially comprise a hydroxyl group on the carbon atom between Ry and Rs.
The formed lactone may have a structure according to formula (III):
Sef ’ (IT) wherein the oxygen of the hydroxyl of the second compound according to formula (II) now forms part of the ring structure. Especially, R4 may comprise 1-4 C atoms that may be part of the ring structure. Hence, the ring structure may comprise especially a four-membered ring, or especially a five-membered ring, or especially a six-membered ring, or especially a seven-
membered ring. In further embodiments, Ry may comprise (other) carbon atoms that may not be part of the ring structure. In embodiments, Rs may not form part of the ring structure. In further embodiments, Rs may not form part of the ring structure.
As indicated above, the method comprises one or more of a preparation stage, a 5 first stage, and a second stage. Each stage will be described here in more detail.
The preparation stage may comprise providing a first compound according to formula (I):
NS @ especially wherein X is selected from the group comprising O, NH, and S, wherein Ry is selected from alkyl groups comprising 1-10 C atoms, and wherein R; is selected from alkyl, alkene and alkyne groups comprising 5-25 C atoms.
In embodiments, X (in the first compound) may be selected from the group comprising O, NH, and S, especially O, or especially NH, or especially S. Hence, the first compound may especially comprise an ester, amide or thioester, especially an ester, or especially an amide, or especially a thioester. Such ester, amide, or thioester comprising compound may have improved solubility and/or no surfactant properties compared to the corresponding carboxylic acid compound. Therefore, such ester, amide, or thioester comprising compound may provide higher yields.
Ri may, in embodiments, be selected from alkyl groups comprising 1-25 € atoms, such as 1-10 C atoms, such as 1-6 C atoms, especially 1-4 C atoms. More especially, Ri may be selected from alkyl groups comprising 4-25 C atoms, such as 6-25 C atoms, especially 10-25 C atoms, more especially 15-25 C atoms. Furthermore, in embodiments, Ri may be selected from alkyl groups comprising at least 5 C atoms, such as at least 10 C atoms, especially at least 20 C atoms. Additionally or alternatively, Ri may be selected from alkyl groups comprising at most 20 C atoms, such as at most 10 C atoms, especially at most 5 C atoms.
Especially, R‚X may act as a leaving group during the ring-formation reaction and hence both
Ri and X may in embodiments not be part of the lactone obtained (in the second stage). Hence, selecting Ri may in embodiments be based on its ability to form a good leaving group RiX.
Especially methyl-, ethyl-, propyl-, isopropyl-, butyl-, and glyceryl-, such as monoglyceride-, diglyceride- and triglyceride, groups may in embodiments form good leaving groups. Hence, in embodiments, R; may comprise especially a methyl-, or especially an ethyl-, or especially a propyl-, or especially an isopropyl-, or especially a butyl-, or especially a monoglyceride-, or especially a diglyceride,- or especially a triglyceride group. It will be apparent to the skilled person that the leaving group in a chemical reaction refers to atoms or groups of atoms that detach from the primary part of the substrate (here especially the first compound).
R: on the other hand may in embodiments become part of the lactone obtained.
Especially, depending on the site of hydroxylation, one part of R; may form the lactone ring, and another part of R> may form a side chain of the lactone.
In embodiments, R2 may be selected from the group comprising alkyl, alkene and alkyne groups. Especially R2 may be an alkyl group, or especially an alkene group, or especially an alkyne group.
In embodiments, R» may comprise 3-50 C atoms, such as 3-25 C atoms, especially 3-19 C atoms, such as 5-19 C atoms, especially 5-13 C atoms, more especially 7-9
C atoms. In other embodiments, R; may comprise 4-25 C atoms, such as 10-25 C atoms, especially 15-25 C atoms. Yet further, in embodiments, R2 may comprise at least 3 C atoms, such as at least 5 C atoms, especially at least 7 C atoms, more especially at least 10 C atoms.
Additionally or alternatively, R2 may comprise at most 40 C atoms, such as at most 35 C atoms, especially at most 25 C atoms, more especially at most 17 C atoms.
The first compound may thus comprise a hydrocarbon chain (-R;) with a terminal ester, amide or thioester group (-C(=O)XR;). Hence, the first compound may, in embodiments, comprise a fatty acid ester, a fatty acid amide, or a fatty acid thioester. Fatty acid esters, fatty acid amides, and fatty acid thioesters may herein collectively be referred to as “fatty acid derivatives”. Hence, the first compound may comprise a fatty acid derivative, especially a fatty acid ester, or especially a fatty acid amide, or especially a fatty acid thioester. Such fatty acid derivatives may have substantially less surfactant properties compared to fatty acids.
Therefore fatty acid derivatives may react much more efficient.
Many embodiments for R2 are possible. Several embodiments will be discussed in the next paragraphs.
In embodiments, R2 may comprise a hydrocarbon chain. The hydrocarbon chain may comprise one or more of alkyl, alkene or alkyne groups, such as an alkyl group, or an alkene group, or an alkyne group. Especially, R2 may in embodiments be a branched hydrocarbon chain. Especially, in such embodiments the first compound may comprise a branched chain fatty acid (BCFA) derivative. In alternative embodiments, R; may be an unbranched hydrocarbon chain. Especially, in such embodiments, the first compound may comprise a linear (unbranched) fatty acid (FA) derivative. In further embodiments, R: may comprise a cyclic group.
Additionally or alternatively, R; may in embodiments be an unsubstituted hydrocarbon chain. In such embodiments, R2 may consist of carbon atoms and hydrogen atoms.
In other embodiments, R> may be a substituted hydrocarbon chain. In such embodiments, one or more hydrogen atoms may be substituted with other groups such as hydroxy groups. Here, a hydroxy (or hydroxyl) group may be a functional group with the chemical formula -OH.
Rs may in embodiments be a saturated hydrocarbon chain, especially an alkyl group. In alternative embodiments, R; may be an unsaturated hydrocarbon chain, especially one or more of alkene or alkyne groups.
In embodiments, R; may be selected from unbranched, unsubstituted, saturated hydrocarbon chains. This embodiment will be described in more detail below (in relation to formula Ia). In other embodiments, R; may be selected from unbranched, unsubstituted unsaturated hydrocarbon chains. In such embodiment, the first compound may essentially comprise a linear non-saturated fatty acid ester, a linear non-saturated fatty acid amide and/or a linear non-saturated fatty acid thioester. In other embodiments, R2 may be selected from unbranched, substituted, saturated hydrocarbon chains. In alternative embodiments, R2 may be selected from unbranched, substituted, unsaturated hydrocarbon chains. In other embodiments,
R: may be selected from branched, unsubstituted, saturated hydrocarbon chains. In alternative embodiments, R: may be selected from branched, unsubstituted, unsaturated hydrocarbon chains. In yet other embodiments, R; may be selected from branched, substituted, saturated hydrocarbon chains. In alternative embodiments, R; may be selected from branched, substituted, unsaturated hydrocarbon chains.
In embodiments, R» may be selected from unbranched, unsubstituted, (unsaturated) alkene and alkyne groups. In more specific embodiments, R» may especially comprise an unbranched (thus linear) alkene comprising 3-50 C atoms, such as 5-25 C atoms, especially 10-20 C atoms.
Hence, in embodiments, R» may be unbranched. In further embodiments, R: may be branched.
Similarly, in embodiments, R2 may be unsubstituted. In further embodiments,
R2 may be substituted.
In further embodiments, R2 may be unsaturated. In alternative embodiments, Rs may be saturated.
In further embodiments, R> may comprise at least one C=C bond, such as at least two C=C bonds, especially at least three C=C bonds.
In further embodiments, R may comprise at most 5 C=C bonds, such as at most three C=C bonds, especially at most two C=C bonds.
It will be obvious to a person skilled in the art that many combinations of saturated/unsaturated, branched/unbranched and substituted/unsubstituted groups for R: are possible. In specific embodiments, R; may comprise dimers or trimers obtainable by dimerization or trimerization reactions of fatty acid (derivatives). In embodiments, R» may comprise isostearic acid (derivatives) or ricinoleic acid (derivatives.
In embodiments, the method may comprise the first stage. The first stage may comprise exposing the first compound to an oxidoreductase, especially in the presence of a peroxide. The term “oxidoreductase” may herein refer to an enzyme that may be configured to catalyze a hydroxylation reaction. In particular, the oxidoreductase may be configured to catalyze hydroxylation of the first compound at position 3, 4, 5, and/or 6 to provide a second compound.
Oxidoreductases are a large class of enzymes generally catalyzing reactions involving the transfer of electrons. Of specific interest herein are those oxidoreductases that catalyze reactions further involving the introduction of O into an organic molecule, such as reactions catalyzed by subclasses of oxidoreductases such as oxidases, peroxidases, oxygenases, and peroxygenases. Hence, in embodiments of the invention the oxidoreductase may be selected from the group consisting of oxidases, peroxidases, oxygenases and peroxygenases. It will be clear to one skilled in the art that the invention is not limited to the use of oxidoreductase (classified as) belonging to any one of the aforementioned subclasses. It will further be clear to one skilled in the art that not each enzyme belonging to the aforementioned subclasses will catalyze the hydroxylation of the first compound at position 3, 4, 5, and/or 6 to provide a second compound. Hence, it will be clear to one skilled in the art that the invention relates to any oxidoreductase configured to catalyze hydroxylation of the first compound at position 3, 4, 5, and/or 6 to provide the second compound.
Oxidases may catalyze oxidation-reduction reactions, especially oxidation- reduction reactions involving O2. At least part of the oxidases may catalyze a reaction involving the introduction of an oxygen into an organic compound. For example, cytochrome P450 oxidase may catalyze a monooxygenase reaction of the form RH + O2 + NADPH + H* > ROH + HO + NADP”. Similarly, a xanthine oxidase may catalyze a reaction of the form RH + 2 O: +H 0 >ROH+20y+2H".
Peroxidases may typically catalyze reactions of the form ROOR" +2 e +2H° > R'OH + R"OH. At least part of the peroxidases may catalyze a reaction involving the introduction of an oxygen into an organic compound. For example, a peroxidase may catalyze a reaction selected from the group comprising Baeyer-Villiger oxidations, oxidations of styrene derivatives to corresponding ketones, and oxidations of sulfides to sulfoxides and sulfones.
Oxygenases may catalyze reactions involving the transfer of an oxygen atom from O: to a substrate, especially to an organic compound. Oxygenases may be further classified into (1) monooxygenases, such as the aforementioned cytochrome P450 oxidase, which introduce one oxygen atom into a substrate, and (ii) dioxygenases which introduce both oxygen atoms from O; into a substrate. In specific instances, the introduction of oxygen may occur via an epoxide intermediate.
Peroxygenases may catalyze reactions involving the transfer of an oxygen atom from a peroxide to a substrate, especially to an organic compound. Hence, peroxygenases may typically catalyze a reaction of the form R'H + R"OOH > R'OH + R"OH, especially wherein
R" consists of H.
In embodiments, the oxidoreductase may comprise one or more of a cytochrome
P450 enzyme, a heme-dependent and/or a vanadium-dependent oxygenase, a catalase, an unspecific peroxygenase (Enzyme Classification (EC) 1.11.2.1), a peroxidase (EC 1.11.1.7), a chloride peroxidase (EC 1.11.1.10) and a bromide peroxidase (EC 1.11.1.18), especially one or more of an unspecific peroxygenase, a peroxidase, a chloride peroxidase, and a bromide peroxidase, more especially an unspecific peroxygenase.
In embodiments wherein the oxidoreductase comprises an unspecific peroxygenase, the unspecific peroxygenase and/or a gene encoding the unspecific peroxygenase may be derived from one or more organisms selected from the group comprising
Agrocybe aegerita, Agrocvbe acericola, Agrocvbe amara, Agrocvbe aivalis, Agrocybe cylindracea, Agrocybe dura, Agrocybe erebia, Agrocybe farinacea, Agrocybe jinua, Agrocybe molesta, Agrocvbe paludosa, Agrocybe parasitica, Agrocvhe pediades, Agrocybe praecox,
Agrocybe putaminum, Agrocybe retigera, Agrocybe semiorbiculcuis, Agrocybe sororia,
Agrocybe vervacti, Coprinellus radians, Coprinellus amphithallus, Coprinellus angulatus,
Coprinellus aureogranulatus, Coprinellus bipellis, Coprinellus bisporiger, Coprinellus bisporus, Coprinellus callinus, Coprinellus congregatus, Coprinellus curtus, Coprinellus deliquescens, Coprinellus deminutus, Coprinellus dilectus, Coprinellus disseminatus,
Coprinellus domesticus, Coprinellus ellisii, Coprinellus ephemerus, Coprinellus flocculosus,
Coprinellus heptemerus, Coprinellus heterosetulosus, Coprinellus hiascens, Coprinellus inipatiens, Coprinellus marculentus, Coprinellus mitrinodulisporus, Coprinellus pellucidus,
Coprinellus plagioporus, Coprinellus pyrrhanthes, Coprinellus radians, Coprinellus sassii,
Coprinellus sclerocystidiosus, Coprinellus subdisseminatus, Coprinellus subimpatiens,
Coprinellus subpurpureus, Coprinellus truncoruni, Coprinellus velatopruinatus, Coprinellus verrucispei-imis, Coprinellus xcnithothrix, Coprinopsis cinerea, Marasmius rotula, and
Sulfolobus tokodaii. Especially, the unspecific peroxygenases and/or gene encoding the enzyme may be derived from one or more organisms selected from the group consisting of Agrocybe aegerita, Coprinellus radians, Marasmius rotula and Sulfolobus tokodaii.
In embodiments wherein the oxidoreductase comprises a peroxidase, the peroxidase and/or a gene encoding the peroxidase may be derived from one or more organisms selected from the group comprising Acorus calamus, Aedes aegypti, Aggegatibacter actinomycetemcomitans, Allium sativum, Arabidopsis thalicnia, Arachis hypogaea, Armoracia rusticana, Arthromyces ramosus, Arundo donax, Beta vulgaris, Bjerkandera adusta, Bos taurus, Brassica napus, Brassica oleracea, Brassica rapa, Bubalus bubali, Butia capitata,
Camellia sinensis, Capra hircus, Capsiam anmmm, Catharantus roseus, Chromolaena odorata, Cicer anetinmn, Coprinopsis cinerea, Cucumis melo, Cucumis melo var, inodorus,
Cynara cardunculiis, Elaeis guineensis, Elizabethkingia meningoseptica, Escherichia coli,
Euphorbia characias, Fagopyrtmi esculentum, Fragaria vesca, Fragaria x ananassa, Glycine max, Gossypiwv hirsutum, Helianthus annuus, Homo sapiens, Hordeum vulgare, Ipomoea batatas, Ipomoea caniea, Jubaea chilensis, Landoltia punctata, Leptogium saturninum, Malus x domestica, Mentha arvensis, Momordica charantia, Mus musculus, Mycobacterium tuberculosis, Neurospora crassa, Nicotiana sylvestris, Nicotiana tabacum, Oryza sativa, Ovis aries, a Pelargonium species, e.g., Pelargonium graveolens, Plasmodium falciparum,
Pleurotus eryngii, Pleurotus ostreatus, Prunus persica, Pyrococcus furiosus, Raphanus sativus, Ratius norvegicus, Roystonea regia, Ruegeria pomerovi DSS-3, Sabal minor,
Sclerocarya birrea, Scutellaria baicalensis, Senecio squalidus, Sesbania rosfata, Sohwvmimn lycopersicum, Solanum melongena, Sorghum bicolor, Sphagimm magellanicum, Streptomyces thermoviolaceus, Sulfolobus acidocaldarius, Sus scrofa, Trachycarpus fortunei, Triticum aestivum, Vitis vinifera, Washingtonia filifera, and Yersinia pseudotuberculosis.
In embodiments wherein the oxidoreductase comprises a chloride peroxidase, the chloride peroxidase and/or a gene encoding the chloride peroxidase may be derived from one or more organisms selected from the group comprising Caldariomyces fumago, Aspergillus niger, Bazzania trilobata, Musa paradisiaca, and Streptomyces tovocaensis.
In embodiments wherein the oxidoreductase comprises a bromide peroxidase, the bromide peroxidase and/or a gene encoding the bromide peroxidase may be derived from one or more organisms selected from the group comprising Agrocvhe aegerita, Ascophyllum nodosum, Corallina officinalis, Corallina pilulifera, Delisea pulchra, Ecklonia stolonifera,
Fucus distichus, Gracilaria changii, Homo sapiens, Kappaphvcus alvarezii, Laminaria hyperborea, Macrocystis pyrifera, Ochtodes secundiramea, Pseudomonas fluorescens,
Pseudomonas putida, Saccharina latissima, Streptomyces aureofaciens, Streptomyces griseus,
Streptomyces venezuelae, and Synechococcus sp.
It will be clear to one skilled in the art that the invention is not limited to the use of a native oxidoreductase of any one of the organisms specifically mentioned herein. Rather, the oxidoreductase may comprise an oxidoreductase of an organism not specifically mentioned herein, especially wherein the enzyme is homologous to an oxidoreductase of any one of the mentioned organisms. Alternatively or additionally, the oxidoreductase may comprise a mutant oxidoreductase, such as a mutant oxidoreductase comprising one or more amino acid substitutions, deletions and/or additions relative to a native oxidoreductase, especially wherein the mutant oxidoreductase is specifically designed through protein engineering.
In specific embodiments, the oxidoreductase may comprise a mutant unspecific peroxygenase. For example, the oxidoreductase may comprise one or more of the PaDa-1, the
JaWa, and the Solo mutants of the unspecific peroxy genase of Agrocybe aegerita as described in Molina-Espeja et al. 2016 ChemBioChem and in WO2017081355A1. In further embodiments, the oxidoreductase may comprise the Jed-I mutant of the unspecific peroxygenase of Agrocybe aegerita as described in Ramirez-Escudero et al. 2018 ACS chemical biology. Hence, in embodiments, the oxidoreductase may comprise a wildtype and/or mutant unspecific peroxygenase, especially a wildtype and/or mutant unspecific peroxygenase of Agrocybe aegerita, more especially one or more of the PaDa-I, the JaWa, the Solo, and the
Jed-I mutants of the unspecific peroxygenase of Agrocvhe aegerita.
In embodiments, the oxidoreductase may be provided via one or more micro- organisms producing the oxidoreductase, or via an addition of isolated oxidoreductase. Herein the term “isolated oxidoreductase” refers to biologically, especially microbially, produced oxidoreductase that has been isolated from the production organism. The isolated oxidoreductase may essentially comprise purified oxidoreductase. In general, embodiments of the invention involve the use of isolated oxidoreductase.
In embodiments, the oxidoreductase may be produced by an organism naturally producing the oxidoreductase. Alternatively or additionally, the oxidoreductase may be produced by a genetically modified organism. For example, in an embodiment the unspecific peroxygenase apol gene of Agrocybe aegerita is heterologously expressed in Pichia pastoris
X-33, which exports the Apol protein (the unspecific peroxygenase) into a medium, for example into a liquid (growth) medium. In alternative embodiments, the oxidoreductase may be produced by an organism naturally producing the oxidoreductase, especially wherein the organism exports the oxidoreductase into a medium. In further embodiments, the oxidoreductase may be isolated from the medium to obtain an isolated oxidoreductase. For example, the media comprising (microbial) cells and oxidoreductase may be centrifuged such that the cells precipitate while the oxidoreductase remains in the supernatant. The supernatant comprising the oxidoreductase may be used as a crude enzyme preparation in the epoxidation stage, 1.e., in embodiments the oxidoreductase may be provided as crude enzyme preparation.
The oxidoreductase may also be further purified from the crude enzyme preparation, i.e, in embodiments the oxidoreductase may be provided in purified form. Methods for heterologous gene expression, protein production, protein isolation, and protein purification will be known by a person skilled in the art.
It will be clear to a person skilled in the art that an enzyme may require a cofactor. Hence in embodiments, the first mixture may comprise a cofactor that is suitable for the oxidoreductase. In embodiments, the first mixture may comprise one or more of heme,
NAD" and NADH.
The oxidoreductase may, in embodiments, especially comprise an unspecific peroxygenase. Unspecific peroxygenases may be particularly suitable for the method of the invention as they may have fewer requirements than other oxidoreductases. For instance, unspecific peroxygenases may not require additional cofactors and corresponding regeneration systems, may function independently from external aeration, and may be stable and active under non-aqueous reaction conditions. The unspecific peroxygenase may, in embodiments, be an enzyme from a fungal protein family, identified by EC no 1.11.2.1. Hence, the unspecific peroxygenase may, in embodiments, belong to enzyme class EC 1.11.2.1. Especially, the unspecific peroxygenase may be an isolated protein, such as isolated from their natural biological source. Alternatively, in embodiments, the unspecific peroxygenase may be a recombinant protein which may be synthesized in vivo or in vitro.
In embodiments, the oxidoreductase may be configured to catalyze a hydroxylation of the first compound at position 3, 4, 5, and/or 6 to provide a second compound.
The oxidoreductase may be configured to catalyze hydroxylation of the first compound especially at position 3, and/or especially at position 4, and/or especially at position 5, and/or especially at position 6. In further embodiments, the oxidoreductase may be configured to catalyze the hydroxylation of the first compound at position 4 or 5. Especially, the position of hydroxylation may determine a ring-size of the lactone obtained by the method. For instance,
hydroxylation at a carbon at a position x may result in a x+1 membered ring, i.e., hydroxylation at position 4 may result in a lactone with 5 atoms in its ring structure.
In embodiments, in the first stage, the peroxide may especially provide a hydroxy group for hydroxylation of the first compound by the oxidoreductase. In embodiments, the peroxide may be selected from the group of hydroperoxides, such as hydrogen peroxide, tert-butyl peroxide, urea hydrogen peroxide, and cumene hydroperoxide. The method of the invention has, for instance, been performed successfully with hydrogen peroxide and tert-butyl peroxide as peroxide. Hence, in embodiments, the peroxide may comprise hydrogen peroxide.
Additionally or alternatively, the peroxide may in embodiments comprise tert-butyl peroxide.
Hence, in specific embodiments, the peroxide comprises one or more of hydrogen peroxide and tert-butyl peroxide.
In embodiments, the method may comprise the second stage. The second stage may especially comprise providing the lactone from the second compound. In embodiments, the lactone formation may be a catalyzed ring-formation reaction. Embodiments of the catalyzation is described below. However, in particular, the second stage may comprise a spontaneous ring-formation reaction, especially in embodiments wherein the oxidoreductase hydroxylates the first compound at position 4 or 5, no second catalyst may be required as the second compound may spontaneously provide a stable five- or six-membered ring, respectively.
In embodiments, the first stage and the second stage may coincide i.e. a part of the first stage and a part of the second stage may be carried out concurrently. Especially, the first stage and the second stage may be performed simultaneously in one reaction vessel. In alternative embodiments, the preparation stage, first stage and second stage may be performed sequentially. More especially, the first stage and second stage may be performed sequentially in one reaction vessel. Alternatively, in embodiments, the first stage may be performed in a first reaction vessel and the second stage may be performed (subsequently) in a second reaction vessel.
As mentioned before, the preparation stage may in embodiments comprise providing the first compound. Further embodiments of the first compound will be described here. As indicated above, in specific embodiments, R: may be selected from unbranched, unsubstituted, saturated alkyl groups. Formula Ia depicts the structural formula of such embodiment of the first compound.
“RT ANN (Ia)
Especially, in embodiments of the first compound, n (as depicted in formula Ia) may be selected from the range of 0-30, such as 0-22, like 0-18, especially 0-12. More especially, n may be selected from the range of 0-10, like 2-8, such as 2-6, especially 2-4. Hence, in embodiments, the first compound has a structural formula according to formula Ia, wherein n is selected from the range of 0-18. Such embodiments of the first compound may be naturally available, especially from renewable feedstocks. In further embodiments, n is selected from the range of 2-6. With such embodiments of the first compound particularly good experimental results have been obtained (see below).
As indicated above, in embodiments, Ry may be selected from alkyl groups.
Especially, Ri may be branched or unbranched (linear). Although R| may generally not become part of the final lactone product, various properties of Ri may be relevant for the method of the invention. These properties may include, for instance, solubility (in the solvent, see below), reactivity, (bio)-availability (as a renewable feedstock), melting temperature, as well as handleability. Especially, first compounds comprising -CHs; (methyl) and -CH>CH3 (ethyl) groups for Ri may be relatively easy to handle and/or affordable. Therefore, the first compound may especially comprise one or more of a fatty acid methyl ester, fatty acid methyl amide, fatty acid methyl thioester, fatty acid ethyl ester, fatty acid ethyl amide and fatty acid ethyl thioester.
Hence, in specific embodiments Ri comprises -CHs or -CH2CHj.
In specific embodiments, the first compound may be selected from the group comprising monoglyceride esters, diglyceride esters, triglyceride esters, methyl esters, and ethyl esters, Esters may be prepared from natural fatty acid (derivatives) as described in Khan et al, Current developments in esterification reaction: A review on process and parameters,
Journal of Industrial and Engineering Chemistry, Volume 103, 2021, 80-101.
In embodiments wherein the oxidoreductase hydroxylates the first compound at position 4 or 5, a stable 5 or 6-membered ring may be obtained respectively. Due to the stability of such a 5- or 6-membered ring, the ring forming reaction may especially occur spontaneously and no (second) catalyst may be required.
In embodiments wherein the oxidoreductase hydroxylates the first compound at position 3 or 6, the corresponding lactone may comprise a 4- or 7-membered ring, respectively.
Such a lactone may be less stable and in embodiments, a second catalyst may be required to catalyze the ring forming reaction. Hence, the method may especially comprise providing a second catalyst to the second compound. More especially, the second catalyst may be provided during and/or preceding the second stage. Further, in embodiments, the second catalyst may comprise 4 hydrolase. Especially, the hydrolase may comprise one or more of a lipase, an esterase, a transacylase and a protease. In alternative embodiments, the second catalyst may comprise an acid, such as a Lewis acid and/or a Bronsted acid. Especially, the acid may comprise one or more of simple mineral acids, and metal salts (free in solution or embedded in heterogeneous caries (e.g. zeolites). Hence, in specific embodiments, the method comprises providing a second catalyst to the second compound during and/or preceding the second stage, wherein the second catalyst comprises one or more of a hydrolase and an acid.
The first stage may in embodiments comprise applying a (first) reaction temperature. The oxidoreductase may perform especially well at a temperature selected from the range of 10-60°C. Especially, the first stage may comprise exposing the first compound to the oxidoreductase at the (first) reaction temperature. In embodiments, the (first) reaction temperature may be selected from the range of 5-150°C, such as from the range of 20°C - 100°C, especially from the range of 25°C - 80°C, more especially from the range of 30-60°C, such as from the range of 40-60°C. Hence, in specific embodiments, the first stage comprises exposing the first compound to the oxidoreductase at a reaction temperature, wherein the reaction temperature is selected from the range of 20°C - 100°C.
Further, in embodiments, the first compound may be a liquid at the reaction temperature. Especially, the first compound may in embodiments form a liquid phase. More especially, the liquid phase (of the first compound) may be a solvent for the first stage.
Especially the liquid phase (of the first compound) may be the only solvent for the first stage.
Especially, in embodiments the solvent comprises a water content wherein the water content is less than 5% such as less than 2%, like less than 1%, especially less than 0.1%. Hence, in this way, compared to conventional methods, the first stage (and/or the second stage) may be carried out under non-aqueous conditions. Especially, since the first compound may be a (liquid phase) solvent, this may provide the advantage of not requiring additional (aqueous) solvents. Water may in embodiments contribute to denaturation of proteins, such as the oxidoreductase.
Therefore, the oxidoreductase, especially the unspecific peroxygenase, may be more stable under non-aqueous conditions. Hence, performing the method under non-aqueous conditions may improve the efficiency of the method.
Especially, in such non-aqueous conditions, the peroxide may comprise tert- butyl peroxide. Tert-butyl peroxide may be better soluble in organic solvents than other peroxides such as hydrogen peroxide. Better solubility of the peroxide may improve a reaction rate of the method and hence may be more efficient. On the other hand, in aqueous conditions, the peroxide may in embodiments comprise hydrogen peroxide as hydrogen peroxide may have a higher solubility in water compared to tert-butyl peroxide.
Additionally or alternatively, the first stage may in embodiments be performed under dehydrating conditions. In such embodiments, water may evaporate, e.g. at 100°C at ambient pressure or lower temperatures at lower pressures. As indicated above, the oxidoreductase, especially the unspecific peroxygenase, may be more stable under non- aqueous conditions. Hence, performing the method under dehydrating conditions may also improve the yield of the method.
In alternative embodiments, the first stage may also comprise one or more other solvent (in addition to the first compound). Furthermore, the other solvent may especially comprise an organic solvent, such as acetonitrile, or dimethyl sulfoxide. In further embodiments, the other solvent may comprise a hydrophobic organic solvent, such as hexane, heptane, pentane, butanol, octanol, benzene, ethyl acetate (EtOAc), or tert-butylmethylether (MBE).
In embodiments, the reaction temperature may be selected such that the first compound may be in a liquid phase. In other words, in embodiments, the reaction temperature may be selected such that the first compound may be melted. Hence, in embodiments, the reaction temperature may be selected above a melting temperature of the first compound. The melting temperature of the first compound may especially depend on R; and Rs, which will be known to a person skilled in the art. In specific embodiments, the reaction temperature may be selected from the range of 10 - 150°C, such as from the range of 20°C - 100°C, especially from the range of 25°C - 80°C. In further embodiments, the reaction temperature may be at least 5°C, such as at least 10°C, like at least 15°C. Additionally or alternatively, the reaction temperature may be below 180°C, especially below 150°C, such as below 100°C, especially below 90°C.
Further, in embodiments, the first stage may comprise providing a first mixture.
In embodiments, the first mixture may comprise one or more of the first compound, the oxidoreductase, especially an (unspecific) peroxygenase, and the peroxide. Hence, in specific embodiments, the first stage comprises providing a first mixture comprising the first compound, the oxidoreductase, and the peroxide, wherein the reaction temperature 1s selected from the range of 20-100°C, and wherein the first compound forms a liquid phase.
Likewise, the second stage may in embodiments comprise selecting a second reaction temperature. Especially, the second stage may comprise exposing the second compound to the second reaction temperature. As indicated above, the first stage and the second stage may in embodiments overlap. That is, (a part of) the first stage may in embodiments be carried out concurrently (or simultaneously) with the second stage. Therefore, in such embodiments, the second reaction temperature may be equal to the (first) reaction temperature.
However, in embodiments wherein the first stage and the second stage are (at least partly) sequential, the second stage may in embodiments comprise applying a second reaction temperature that differs from the (first) reaction temperature. However, in alternative embodiments, the second reaction temperature may in embodiments be selected equal to the (first) reaction temperature (even when the first stage and the second stage are fully sequential).
In embodiments, the second reaction temperature may be selected such that the second compound may be in a liquid phase. In other words, in embodiments, the reaction temperature may be selected such that the second compound may be melted. Hence, in embodiments, the reaction temperature may be selected above a melting temperature of the second compound. The melting temperature of the second compound may especially depend on Ry and Raz, which will be known to a person skilled in the art. In specific embodiments, the second reaction temperature may be selected from the range of 10 - 150°C, such as from the range of 20°C - 100°C, especially from the range of 25°C - 80°C. In further embodiments, the second reaction temperature may be at least 5°C, such as at least 10°C, like at least 15°C.
Additionally or alternatively, the reaction temperature may be below 250°C, such as below 200°C, like below 150°C. In embodiments, the second reaction temperature may be selected from the range of 15°C - 200°C, like from the range of 20°C - 100°C, especially from the range of 30-60°C, such as from the range of 20°C - 80°C. Hence, in specific embodiments, the second stage comprises exposing the second compound to a second reaction temperature, wherein the second reaction temperature is selected from the range of 20°C - 100°C.
As mentioned above, the first compound may in embodiments form a liquid phase (e.g. the first compound may melt at the first reaction temperature). Further, in embodiments, the first compound may be provided in an aqueous solution. Thus, the first stage may in embodiments comprise providing a first mixture in an aqueous solution. Especially, the first mixture may comprise one or more of the first compound, the oxidoreductase, especially the (unspecific) peroxygenase, and the peroxide. In specific embodiments, the aqueous solution may have a pH selected from the range of 2.0-14.0, such as from the range of 4.0-11.0, especially from the range of 5.0-8.0, such as from the range of 6.0-7.0. Hence, in specific embodiments, the first stage comprises providing a first mixture in an aqueous solution, wherein the first mixture comprises the first compound, the oxidoreductase, especially the (unspecific) peroxygenase, and the peroxide wherein the aqueous solution has a pH selected from the range of 5.0-8.0. In further embodiments, the first mixture may further comprise an organic solvent, such as acetonitrile and/or dimethyl sulfoxide. The organic solvent may in embodiments make up 0-99 vol.% such as 0-50 vol.%, especially 2-20 vol.% of the total solvent. Further, in embodiments, the organic solvents may make up 10-90 vol .%, such as 40- 80 vol.%, especially 50-70 vol %.
As indicated above, the method may be independent from external aeration.
Hence, in embodiments the first mixture may have an oxygen level below 15 vol. %, such as below 10 vol. %, especially below 7 vol.%, such as below 4 vol.%. In alternative embodiments, the first mixture may have an oxygen level above 4 vol.%, such as above 7 vol.%, especially above 10 vol.%.
The method of the invention may especially comprise using an oxidoreductase.
In further embodiments, the oxidoreductase may comprise an unspecific peroxygenase. The term “unspecific peroxygenase” may herein refer to an enzyme that may be configured to catalyze a variety (hence “unspecific”) of hydroxylation reactions. The unspecific peroxygenase is an enzyme, hence a protein and thus has an amino acid sequence. In specific embodiments, unspecific peroxygenase may have an amino acid sequence having at least 30%, like at least 50% such as at least 70%, like at least 80%, especially at least 90%, such as at least 95%, including 100% sequence identity to a reference amino acid sequence with respect to a sequence alignment between the amino acid sequence and the reference amino acid sequence.
In embodiments, the sequence alignment may have a length of at least 40%, such as at least 65%, like at least 70%, such as at least 80%, especially at least 90%, such as at least 99%, including 100% of a sequence length of the reference amino acid sequence. In embodiments, the reference amino acid sequence may be one or more of SEQ ID NO:1, SEQ ID NO:2 and
SEQ ID NO:3. Especially, the reference amino acid sequence may in embodiments be selected from the group comprising SEQ ID NO: 1-3, especially SEQ ID NO:1, or especially SEQ ID
NO:2, or especially SEQ ID NO:3. Hence, in embodiments, unspecific peroxygenase has an amino acid sequence having at least 80% sequence identity to a reference amino acid sequence with respect to a sequence alignment between the amino acid sequence and the reference amino acid sequence, wherein the sequence alignment has a length of at least 70% of a sequence length of the reference amino acid sequence, wherein the reference amino acid sequence is selected from the group comprising SEQ ID NO:1-3. In further embodiments, a peroxygenase having at least 80% sequence identity to SEQ ID NO:2 or to SEQ ID NO:3 may be more active and/or selective to a reaction of interest. Hence, in embodiments, the reference amino acid sequence is selected from the group comprising SEQ ID NO:2-3. Also, such peroxygenase may be smaller (having a shorter amino acid sequence length) compared to SEQ ID NO:1 and hence may be easier and/or cheaper to produce.
In general, if two proteins consist of (highly) similar amino acid sequences, these two proteins may be likely to perform the same biological function. This relation between amino acid sequence and protein function may, for example, be used to predict the function of a protein based on its sequence identity with proteins of known function (annotation by sequence homology based inference). The term “sequence identity” herein refers to the percentage of the characters (such as amino acids in an amino acid sequence) in the shorter of two sequences matching an identical character in the longer of the two sequences in a sequence alignment (also see below). The higher the sequence identity between two proteins, the higher the chance may be that these two proteins have the same or a similar function. Although there may not be a hard rule for inferring functional identity or similarity based on a threshold value for sequence identity, especially as the threshold value may need to be adjusted based on (relative) sequence length and/or protein function, proteins may have been successfully annotated based on a common rule-of-thumb threshold of at least 30-40% sequence identity.
Hence, proteins similar to SEQ ID NO:1-3 in both length (including both shorter and longer) and amino acid sequence may have a similar activity as SEQ ID NO:1-3.
Amino acid sequence alignments may especially be obtained using BLASTp at the website of the National Center for Biotechnology Information (NCBI). Two sequences may be aligned via BLASTp, especially using default algorithm parameters, such as using a
BLOSUM62 matrix with a gap cost of 11:1 (existence extension).
Hence, in embodiments, the sequence alignment of the unspecific peroxygenase amino acid sequence and one or more of SEQ ID NO: 1-3 may be a BLASTP pairwise sequence alignment obtained with a BLOSUM62 matrix with an existence gap cost of 11 and an extension gap cost of 1.
In embodiments, the unspecific peroxygenase amino acid sequence may be shorter or longer than one or more of SEQ ID NO: 1-3. Hence, in embodiments, the unspecific peroxygenase amino acid sequence of the unspecific peroxygenase protein may have a sequence length > 50% of the sequence length of one or more of SEQ ID NO:1-3, such as > 60%, especially > 70%, such as > 80, especially > 90, such as > 100%, especially > 120%.
Similarly, in further embodiments, the unspecific peroxygenase amino acid sequence of the unspecific peroxygenase protein may have a sequence length < 200% of the sequence length of one or more of SEQ ID NO:1-3, such as < 180%, especially < 160%, such as < 140%, especially < 130%, such as < 120%, especially < 110%, such as < 100%.
Specifically, SEQ ID NO:1 corresponds to the amino acid sequence of the unspecific peroxygenase protein of Agrocyhe aegerita unspecific peroxygenase (4aeUPO).
Further, SEQ ID NO:2 corresponds to the amino acid sequence of the unspecific peroxygenase protein of Daldinia caldariorum unspecific peroxygenase (DcaUPO). Likewise, SEQ ID NO:3 corresponds to the amino acid sequence of the unspecific peroxygenase protein of Collariella virescens unspecific peroxygenase (CviUPO).
In specific embodiments, the oxidoreductase may comprise an unspecific peroxygenase. Especially, the unspecific peroxygenase may comprise an Agrocybe aegerita unspecific peroxygenase (4aeUPO) protein, i.e., an unspecific peroxygenase (derived) from
Agrocybe aegerita. Additionally or alternatively, the unspecific peroxygenase may in embodiments comprise a Daldinia caldariorum unspecific peroxygenase (DcaUPO) protein.
In further embodiments, the unspecific peroxygenase may comprise a Collariella virescens unspecific peroxygenase (CviUPO) protein. In specific embodiments, the unspecific peroxygenase may comprise one or more of AaeUPO, DcaUPO, and CviUPO.
In further embodiments, the oxidoreductase amino acid sequence may comprise at least one difference to the reference sequence, especially to one or more of SEQ ID NO: 1-3, or especially to (each of) the reference sequences. Hence, in embodiments, the oxidoreductase protein may be a recombinant unspecific peroxygenase protein, wherein an oxidoreductase amino acid sequence of the recombinant unspecific peroxygenase protein is engineered to have at least one difference with respect to (each of) the reference sequences. The difference may especially be an amino acid deletion, addition, and/or substitution. Hence, in embodiments, the oxidoreductase protein may be a non-naturally occurring protein.
In embodiments, the oxidoreductase protein may comprise 100 — 800 amino acids, such as 200 — 600 AA.
The method of the invention may be used to provide one or more of y- decalactone and ò-decalactone. In embodiments of the method, the first compound may be according to formula Ia, wherein X=0, i.e., the first compound comprises an ester. Especially, in embodiments, n=4. In such embodiments, the method may provide one or more of a y- decalactone and a ò-decalactone. In further embodiments, the peroxide may comprise hydrogen peroxide. Hence, in specific embodiments, X=0, wherein n=4, wherein the peroxide comprises hydrogen peroxide, and wherein the method provides one or more of a y-decalactone and a ô- decalactone. In this way, the industrially relevant lactones y-decalactone and ò-decalactone may be provided via a relatively scalable and more cost-effective method.
In yet further embodiments, the first compound may be according to formula Ia, wherein X=NH or X=S , i.e, the first compound comprises an amide or thioester. Especially, in embodiments, n=4. In such embodiments, the method may provide one or more of a y- decalactone and a d-decalactone. Hence, in specific embodiments, X=NH or X=S. In further embodiments, the peroxide may comprise hydrogen peroxide. In more specific embodiments,
X=NH or X=S, wherein n=4, wherein the peroxide comprises hydrogen peroxide, and wherein the method provides one or more of a y-decalactone and a ò-decalactone. Also in this way, the industrially relevant lactones y-decalactone and ô-decalactone may be provided via a relatively scalable and more cost-effective method.
In embodiments, the first compound may comprise a fatty acid derivative. The term “fatty acid derivative” may especially refer to a one or more of a fatty acid ester, a fatty acid amide and a fatty acid thioester. Also, in embodiments the fatty acid derivative may comprise a natural fatty acid derivative. Especially in such embodiments, the first compound may originate from a biological sample. However, the natural fatty acid derivative may in embodiments be chemically synthesized. Alternatively, in embodiments the fatty acid derivative may comprise a non-natural fatty acid derivative. Although one or more of the first compound and the oxidoreductase may originate from a biological sample, the method of the invention may in embodiments especially comprise exposing the first compound to the oxidoreductase in vitro. The term “in vitro” may herein refer to “outside of their natural (biological) context”. Hence the first compound may in embodiments comprise an isolated fatty acid derivative. Likewise, the oxidoreductase may in embodiments comprise an isolated enzyme. Especially, the first stage may in embodiments be in vitro, such as in a (first) reaction vessel, reaction tube etc.
In a further aspect, the invention may provide a use of the lactone obtainable by the method of the invention. In embodiments, the use of the lactone may comprise use as a flavor ingredient. Additionally or alternatively, in embodiments, the use of the lactone may comprise use as a fragrance ingredient. In summary, the invention may in embodiments comprise use of the lactone in the flavor and fragrance industry. This embodiment may (also) comprise the use of the lactone as a food ingredient and hence, use of the lactone in food industry. Further embodiments may comprise the use of the lactone as a polymer building block, for e.g. as a monomer for ring opening polymerization of polycaprolactone. Hence, in specific embodiments the invention provides a use of the lactone obtainable by the method of the invention as one or more of a flavor and fragrance ingredient or a polymer building block.
Embodiments of the invention will now be described, by way of example only, with reference to the accompanying schematic drawings in which corresponding reference symbols indicate corresponding parts, and in which: Fig. 1 schematically depicts an embodiment of the method of the invention; Fig. 2 schematically depicts further embodiments of the method of the invention; Fig. 3 schematically depicts an embodiment of the method of the invention; and Figs. 4 and 5 depict experimental data. The schematic drawings are not necessarily on scale.
Fig. 1 schematically depicts embodiments of a method for providing a lactone 10, wherein the method comprises: a preparation stage, a first stage and a second stage. In the depicted embodiment, these stages coincide. In embodiments, the preparation stage may comprise providing a first compound 1 according to formula (I):
Especially, X may be selected from the group comprising O, NH, and S, especially O, or especially NH, or especially S. Ri may in embodiments be selected from alkyl groups comprising 1-10 C atoms. In specific embodiments, Ry may comprise -CHs or -CH>CHj3. In further embodiments, Ra may be selected from branched or unbranched, substituted or unsubstituted hydrocarbon chains, especially one or more of alkyl, alkene, and alkyne groups.
Especially, R2 may comprise 5-25 C atoms. The first stage may in embodiments comprise exposing the first compound 1 to an oxidoreductase 3, especially an unspecific peroxygenase, in the presence of a peroxide 4. The oxidoreductase 3 may especially be configured to catalyze hydroxylation of the first compound 1 at position 3, 4, 5, and/or 6, especially at position 3, and/or at position 4, and/or at position 5, and/or at position 6. In embodiments, the second stage may comprise providing the lactone 10 from the second compound 2 via a (spontaneous) ring- formation reaction.
In further embodiments, the first stage may comprise exposing the first compound 1 to the oxidoreductase 3 at a reaction temperature. Especially, the reaction temperature may be selected from the range of 20°C - 100°C. In further embodiments, the first stage may comprise providing a first mixture comprising the first compound 1, the oxidoreductase 3, and the peroxide 4 wherein the reaction temperature may be selected from the range of 20-100°C, wherein the first compound 1 forms a liquid phase.
In alternative embodiments, the first stage may comprise providing a first mixture in an aqueous solution. The first mixture may especially comprise the first compound 1, the oxidoreductase 3, and the peroxide 4. In embodiments, the aqueous solution may have a pH selected from the range of 5.0-8.0.
In embodiments of the method of the invention, the oxidoreductase 3 may have an amino acid sequence having at least 80% sequence identity to a reference amino acid sequence with respect to a sequence alignment between the amino acid sequence and the reference amino acid sequence. Especially, the sequence alignment may have a length of at least 70% of a sequence length of the reference amino acid sequence. In specific embodiments the reference amino acid sequence may be selected from the group comprising SEQ ID NO: 1- 3. In embodiments, the reference amino acid sequence may be SEQ ID NO:1. In alternative embodiments, the reference amino acid sequence may be selected from the group comprising
SEQ ID NO:2-3, especially SEQ ID NO:2, or especially SEQ ID NO:3.
In embodiments, the peroxide 4 may comprise one or more of hydrogen peroxide and tert-butyl peroxide. In specific embodiments, the method may comprise exposing the first compound 1 to the oxidoreductase 3 in vitro.
The invention may further provide use of the lactone 10 obtainable by the method of the invention as one or more of a flavor and fragrance ingredient or a polymer building block.
Fig. 2a-b schematically depict embodiments wherein the method may comprise providing a second catalyst 5 to the second compound 2 during and/or preceding the second stage. Fig. 2a schematically depicts embodiments wherein the first stage and the second stage overlap. In embodiments, the method may comprise providing the second catalyst 5 to the second compound 2 during and/or preceding the first stage. The second catalyst 5 may in embodiments comprise one or more of a hydrolase and an acid.
Fig. 2b schematically depicts embodiments wherein the first stage precedes the second stage. In such embodiments, the second catalyst 5 may be provided after the first stage.
Hence, in embodiments the method may comprise providing the second catalyst 5 to the second compound 2 during and/or preceding the second stage.
In further embodiments, the second stage may comprise exposing the second compound 2 to a second reaction temperature. Especially, the second reaction temperature may be selected from the range of 20°C - 100°C.
Fig. 3 schematically depicts specific embodiments of the method of the invention. Especially, the first compound 1 may in embodiments have a structural formula as depicted in Fig. 3. In specific embodiments, n may be selected from the range of 0-18. In more specific embodiments n may be selected from the range of 2-6. In specific embodiments n=4.
In further embodiments, X=0, i.e., the first compound may comprise an ester. Especially, the peroxide may in embodiments comprise hydrogen peroxide. In the depicted embodiment, the oxidoreductase 3 may be configured to hydroxylate the first compound 1 at position 4 and/or 5. Hence, as depicted, two distinct second compounds 2 may be formed. In such embodiments, the method may provide one or more of a y-decalactone and a ô-decalactone. In alternative embodiments, X=NH or X=S, i.e., the first compound may comprise an amide or thioester.
Experiments
Unless described otherwise, the experiments described herein are performed using the materials and methods described hereinafter.
Example with methyl hexadecanoate and Agrocybe aegerita unspecific peroxygenase (AaeUPO)
The reaction was (separately) performed in 1 mL with two different first compounds 1: methyl hexanoate and methyldecanoate, with 1 uM r4aeUPO mutant, 5 mM/h
H:O: (continuously) and buffer (50 mM KPi, pH 7.0), and was under 600 rpm shaking speed at 25°C for 24 h. Samples were withdrawn and extracted with ethyl acetate (containing 5 mM cyclooctane as internal standard 9). The organic layer was dried over magnesium sulfate (MgSO:) for gas chromatography analysis.
In these conditions, methyl 4-hydroxyhexanoate (obtained with a regioselectivity m-1/ 0-2 ratio of 99:1) appeared as the main product. The second compound 2, the lactonization product, was also observed in these conditions at 8.8 minutes as depicted in
Fig. 4a. Fig 4a schematically depicts a GC chromatogram of samples taken at multiple time points of hydroxylation reaction from first compound 1 methyl hexanoate to second compound 2 methyl 5-hydroxyhexanoate. Peaks for the first compound 1, the second compound 2, an internal standard 9, and the lactone 10 can be observed. The reaction was followed over time with samples taken at t1=1h, t2=2h, t4=4h, t6=6h, and t24=24h. An intensity I (uV) is plotted against a retention time t (min).
In order to enlarge the proportion of the lactone 10, the product was isolated in ethyl acetate. The organic layer was dried over MgSO, and then evaporated with N: flow. After removing the solvent, liquid was dissolved in CH:Cl: (5 mL/g lactone) and TFA (0.04 mL/g lactone). The lactonization reaction was performed under 300 rpm at 25°C for 18 h. And the reaction was diluted with ethyl acetate and worked up with 100 mM NaHCO; solution. The organic layer was then washed with water and dried with MgSO:. The solvent was evaporated to obtain ô-hexalactone, which was confirmed with 'H NMR (400 MHz) and *C NMR (100
MHz) spectra (obtained in CDCls). Fig. 4b schematically depicts a GC-MS analysis of the obtained ô-hexalactone in amount A (in arbitrary units) against mass m (in u).
Example with octanoic acid and the unspecific peroxygenases from
Daldinia caldoriorum (DcaUPO).
In 250 pL of sodium phosphate buffer (100 mM, pH6), 1 uM of DcaUPO was added (as a cell free extract from heterologous production in Escherichia coli) as well as 5 mM of octan-1-ol from an acetonitrile solution (final concentration of acetonitrile: 10 v/v %). 2 mM of hydrogen peroxide (H20;) was added to start the reaction. 2 mM of H;0: was supplemented every hour until 4h.
The reaction was quenched by the addition of 5 uL IM HCI solution and extracted two times with 250 uL of a solution of 5 mM 1-octanol in ethyl acetate. The organic phase was dried on magnesium sulfate and injected in gas chromatography. Fig. 5 schematically depicts a GC chromatogram of the dried organic phase. An intensity I (in pV) is plotted against a retention time t (in min). Samples were measured at t0=0h, t1=1h, t2=2h and t15=15h. The gamma hydroxylation product (second compound 2) and corresponding lactone 10 were detected.
These examples show that the method of the invention may provide lactones starting from fatty acid derivatives and using an unspecific peroxygenase.
The term “plurality” refers to two or more. Furthermore, the terms “a plurality of” and “a number of” may be used interchangeably.
The terms “substantially” or “essentially” herein, and similar terms, will be understood by the person skilled in the art. The terms “substantially” or “essentially” may also include embodiments with “entirely”, “completely”, “all”, etc. Hence, in embodiments the adjective substantially or essentially may also be removed. Where applicable, the term “substantially” or the term “essentially” may also relate to 90% or higher, such as 95% or higher, especially 99% or higher, even more especially 99.5% or higher, including 100%.
Moreover, the terms “about” and “approximately” may also relate to 90% or higher, such as 95% or higher, especially 99% or higher, even more especially 99.5% or higher, including 100%. For numerical values it is to be understood that the terms “substantially”, “essentially”, “about”, and “approximately” may also relate to the range of 90% - 110%, such as 95%-105%, especially 99%-101% of the values(s) it refers to.
The term “comprise” also includes embodiments wherein the term “comprises” means “consists of”.
The term “and/or” especially relates to one or more of the items mentioned before and after “and/or”. For instance, a phrase “item 1 and/or item 2” and similar phrases may relate to one or more of item 1 and item 2. The term "comprising" may in an embodiment refer to "consisting of" but may in another embodiment also refer to "containing at least the defined species and optionally one or more other species".
Furthermore, the terms first, second, third and the like in the description and in the claims, are used for distinguishing between similar elements and not necessarily for describing a sequential or chronological order. It is to be understood that the terms so used are interchangeable under appropriate circumstances and that the embodiments of the invention described herein are capable of operation in other sequences than described or illustrated herein.
The devices, apparatus, or systems may herein amongst others be described during operation. As will be clear to the person skilled in the art, the invention is not limited to methods of operation, or devices, apparatus, or systems in operation.
The term “further embodiment” and similar terms may refer to an embodiment comprising the features of the previously discussed embodiment, but may also refer to an alternative embodiment.
It should be noted that the above-mentioned embodiments illustrate rather than limit the invention, and that those skilled in the art will be able to design many alternative embodiments without departing from the scope of the appended claims.
In the claims, any reference signs placed between parentheses shall not be construed as limiting the claim.
Use of the verb "to comprise" and its conjugations does not exclude the presence of elements or steps other than those stated in a claim. Unless the context clearly requires otherwise, throughout the description and the claims, the words “comprise”, “comprising”, “include”, “including”, “contain”, “containing” and the like are to be construed in an inclusive sense as opposed to an exclusive or exhaustive sense; that is to say, in the sense of “including, but not limited to”.
The article "a" or "an" preceding an element does not exclude the presence of a plurality of such elements.
The invention may be implemented by means of hardware comprising several distinct elements, and by means of a suitably programmed computer. In a device claim, or an apparatus claim, or a system claim, enumerating several means, several of these means may be embodied by one and the same item of hardware. The mere fact that certain measures are recited in mutually different dependent claims does not indicate that a combination of these measures cannot be used to advantage.
The invention also provides a control system that may control the device, apparatus, or system, or that may execute the herein described method or process. Yet further, the invention also provides a computer program product, when running on a computer which is functionally coupled to or comprised by the device, apparatus, or system, controls one or more controllable elements of such device, apparatus, or system.
The invention further applies to a device, apparatus, or system comprising one or more of the characterizing features described in the description and/or shown in the attached drawings. The invention further pertains to a method or process comprising one or more of the characterizing features described in the description and/or shown in the attached drawings.
Moreover, if a method or an embodiment of the method is described being executed in a device, apparatus, or system, it will be understood that the device, apparatus, or system is suitable for or configured for (executing) the method or the embodiment of the method, respectively.
The various aspects discussed in this patent can be combined in order to provide additional advantages. Further, the person skilled in the art will understand that embodiments can be combined, and that also more than two embodiments can be combined. Furthermore, some of the features can form the basis for one or more divisional applications.
The project leading to this application has received funding from the European
Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 966788).
i xml versicn=Nl, ON encoding=TUTFE-8" 7 2 <!DOCTYPE ST26SequenceListing PUBLIC "-//WIPO//DTD Sequence Listing 1.3//EN" "ST265equenceListing V1 3.dtd"> 3 <3T268equencelisting dvdVerazlon="V1 3" fÍilsName="PLS002SINL00 Seguencelisting. xml” soïtwaceNems=*WIPO Sagueance? soitwareVersion="2.1.2% productions ieo=v2023-05-08">
A <AppliicantFileRefsrence>P1600281INLO0</AppiicantFileReferance> > <ApplicantName languecelcde="en">Technische Universiteit Delft/ApplicantNeme»> & <InventorName languagsCode="an®>Frank Hollmann</InventorName: 7 <IpventicnTitle lanmiagelods=tan">Oxidative lactonization of fatty acid derivatives by an oxidoreductase</InvantionTitle> © <SegquenceïotalQuantityr3</SeuuenceToral{uantity>» 9 <SequenceData sequence lDNumben="1F>
LD <INSDSeq> dd <INSDSeag Lengith>325</INSDSeq length»
LE <INSDSeq moliype>BAA</INSDSeq moltype» 13 <INSDSeq division>PAT</INSDSeg division» 14 <INSDSeq feature-table> in <INSDFeature> ia <INSDFeature key>sourcec/INSDFeature key»
Lj <IN3DFeature location>l1..325</INSDFearure location> is <INSDFeature guals> ie <INSDOualifien> <INSDQualifier name>mol type</INSDQualiifier name>
ZL <INSDQualifier valuerprotein</IN3DQualifier value> a </INSDOualifiers 23 <INSDQualifler in="ge"> 24d <INSDQualifier name>organism</iNSDQualifier name> <INS5DQualifier value>Agrocybe aegerita</IN3DQualifier value» 26 </INSDQuali fier»
ZF </INSDFeature quals> 25 </IN3DFeature> wh </INSDSeg feature-table> <INSDSeq sequence>LPPGPLENSSAKLVNDEAHPWKPLRPGDIRGPCPGLNTLASHGYLPRNGVATPVQT
INAVQEGLNFDNQAAVFATYAAHLVDGNLITDLLSIGRKTRLTGPDPPPPASVGGLNEHGTFEGDASMTRGDAF
FGNNHDFNETLFEQLVDY SNRFGGGKYNLTVAGELRFKRIQDSIATNPNFSFVDFRFFTAYGETTFPANLFVDG
RRDDGQLDMDAARSFFQFSRMPDDFFRAPSPRSGTGVEVVIQAHPMQPGRNVGKINSY TVDPTSSDFSTPCLMY
EKFVNITVKSLYPNPTVQLRKALNTNLDFFFQGVAAGCTQVFPYGRD/INSDSeq sequence
Sl </INSDSeg>
Sd </SequenceData> 33 “<SequenceData segusnceliNumec=N&N> 24 <INSDSeq> 25 <INSDSeq length»265</INSDSeq length» 38 ZINSDSegq moltype>AA</INSDSeq moltype> 37 <INSDSeag divisior>PAT</INSDIeqg division» <INSDSeq feature-table>
RS <INSDFeature> <INSDFeature keyvsource“/INSDFeature key> 41 “INSDFeature location>l..265</INSDFasature location» 42 <INSDFeature quels» a2 <INSDOualifier> 44 <IN3DQualifier name>mol type</INSDQualifisr name> <IN3DQualifier valuevprotein</INSDQualifisr valus>
A </INSDQualifier> 47 <INSDQualifier id="g3"> 45 CINSDQualifisr namerorganism</INsSDQualifier name> 4% <INSDQualifisr valus>Daldinia caldariorum“/INSDQualifier value» </INSDQualifier> 51 </IN3DFeature guals> 52 </INSDFeatura> 5% </INSDSeu feature-table> <INSDSeq sequence>MGSSHHHHHHS SGLVPRGSHMAPWKAPGPDDVRGPCPMLNTLANHGFLPHDGKNID
VNTTVNALSSALNLDDELSRDLHTFAVTTNPQPNATWFSLNHLSRHNVLEHDASLSRQDAYFGPPDVFNAAVEN
ETKAYWTGDIINFQMAANALTARLMTSNLTNPEFSMSQLGRGFGLGETVAYVTILGSKETRTVPKAFVEYLFEN
ERLPYELGFKKMKSALTEDELTTMMGEIYSLQHLPESFTKPFAKRSEAPFEKRAEKRCPFH</INSD3eq seg uencer </INSDSeg>
SE </Zequencebatar 57 <Sequencebata seguenasibNumbar=sn3vs
LE <INSDieg> 53 <INSDSeq length>260</INSDSeg length a) <INSDSeq moltype>AA“/INSDSeg moltype> al <IN3DSeq division»PAT</INSD3eq division» a2 <INSDSeq feature-table> 23 <INSDFeabture> a4 <INSDFeature key>source</INIDFeature key> en <INSDFeature location>l..260</INSDFeature location
G8 <INSDFearure gualsr a7 <INSDQualifier»> af <INSDQualifier name>mol type</iNSDQualifier name> 53 <IN3DQualifier value>protein“/INSDQualifier value»
TO </INSDQuali fier»
EL <INSDQualifier ìid='ga4l>
Te <INSDQualifier namevorganism“/INSDQualifier name> 7 <INSDQualifier valuerCollariella virescens</INSDQualifier value»
Ta </INSDQualifiers> “/INSDFeature guals>
ES </INSDFeaturer ij </INSDSeg features table» <iNSDSeg sequence>MELDFSKWKTRQPGEFRAPCPAMNSLANHGFIPRDGRNITVAMLVPVLQEVFHLSP
ELAQTISTLGLFTAQDPSKGVFTLDDLNRHNLFEHDASLSREDYYFHKDASTFRPEVFKKFMSHFKGKEYVTLE
DAASARYAMVQESRKKNPTFTYTVQORITSYGETIKYFRTIVEPATGKCPVAWIKILFEQERLPYNEGWRPPKA
ELSGFSMASDVLELALVTPEKLIDKPCEGKQCPQARGIHGYFGMLLPITAQELAVK</INSDSe G sequence
Fa </INSDSeg> a0 </SeguencaData>
SA </5T263eguencalisting>
Claims (16)
Priority Applications (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
NL2032993A NL2032993B1 (en) | 2022-09-09 | 2022-09-09 | Oxidative lactonization of fatty acid derivatives by an oxidoreductase |
PCT/NL2023/050443 WO2024054111A1 (en) | 2022-09-09 | 2023-08-29 | Oxidative lactonization of fatty acid derivatives by an oxidoreductase |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
NL2032993A NL2032993B1 (en) | 2022-09-09 | 2022-09-09 | Oxidative lactonization of fatty acid derivatives by an oxidoreductase |
Publications (1)
Publication Number | Publication Date |
---|---|
NL2032993B1 true NL2032993B1 (en) | 2024-03-21 |
Family
ID=83903109
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
NL2032993A NL2032993B1 (en) | 2022-09-09 | 2022-09-09 | Oxidative lactonization of fatty acid derivatives by an oxidoreductase |
Country Status (2)
Country | Link |
---|---|
NL (1) | NL2032993B1 (en) |
WO (1) | WO2024054111A1 (en) |
Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20050130278A1 (en) | 2002-06-28 | 2005-06-16 | Katsuhisa Mitsuhashi | Processes for producing lactone |
WO2014056917A2 (en) * | 2012-10-12 | 2014-04-17 | Novozymes A/S | Polypeptides having peroxygenase activity |
WO2017081355A1 (en) | 2015-11-13 | 2017-05-18 | Consejo Superior De Investigaciones Cientificas (Csic) | Mutants of unspecific peroxygenase with high monooxygenase activity and uses thereof |
WO2020018729A1 (en) * | 2018-07-17 | 2020-01-23 | Conagen Inc. | Biosynthetic production of gamma-lactones |
Family Cites Families (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN112778505A (en) * | 2021-01-26 | 2021-05-11 | 中国科学院青岛生物能源与过程研究所 | Synthesis method of gradual change type polyester |
-
2022
- 2022-09-09 NL NL2032993A patent/NL2032993B1/en active
-
2023
- 2023-08-29 WO PCT/NL2023/050443 patent/WO2024054111A1/en unknown
Patent Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20050130278A1 (en) | 2002-06-28 | 2005-06-16 | Katsuhisa Mitsuhashi | Processes for producing lactone |
WO2014056917A2 (en) * | 2012-10-12 | 2014-04-17 | Novozymes A/S | Polypeptides having peroxygenase activity |
WO2017081355A1 (en) | 2015-11-13 | 2017-05-18 | Consejo Superior De Investigaciones Cientificas (Csic) | Mutants of unspecific peroxygenase with high monooxygenase activity and uses thereof |
WO2020018729A1 (en) * | 2018-07-17 | 2020-01-23 | Conagen Inc. | Biosynthetic production of gamma-lactones |
Non-Patent Citations (9)
Title |
---|
CIRINO P C ET AL: "Regioselectivity and Activity of Cytochrome P450 BM-3 and Mutant F87A in Reactions Driven by Hydrogen Peroxide", ADVANCED SYNTHESIS AND CATALYSIS, JOHN WILEY & SONS, INC, HOBOKEN, USA, vol. 344, no. 9, 28 October 2002 (2002-10-28), pages 932 - 937, XP002638821, ISSN: 1615-4150 * |
DIETRICH M ET AL: "Altering the regioselectivity of the subterminal fatty acid hydroxylase P450 BM-3 towards [gamma]- and [delta]-positions", JOURNAL OF BIOTECHNOLOGY, ELSEVIER, AMSTERDAM NL, vol. 139, no. 1, 1 January 2009 (2009-01-01), pages 115 - 117, XP025796282, ISSN: 0168-1656, [retrieved on 20081015], DOI: 10.1016/J.JBIOTEC.2008.10.002 * |
HAMMERER LUCAS ET AL: "Regioselective Biocatalytic Hydroxylation of Fatty Acids by Cytochrome P450s", CATALYSIS LETTERS, J.C. BALTZER, NEW YORK, vol. 148, no. 3, 21 December 2017 (2017-12-21), pages 787 - 812, XP036440312, ISSN: 1011-372X, [retrieved on 20171221], DOI: 10.1007/S10562-017-2273-4 * |
KHAN ET AL.: "Current developments in esterification reaction: A review on process and parameters", JOURNAL OF INDUSTRIAL AND ENGINEERING CHEMISTRY, vol. 103, 2021, pages 80 - 101, XP086766719, DOI: 10.1016/j.jiec.2021.07.018 |
LINDE DOLORES ET AL: "Supplemental material for: Two New Unspecific Peroxygenases from Heterologous Expression of Fungal Genes in Escherichia coli", APPLIED AND ENVIRONMENTAL MICROBIOLOGY, ARTICLE NO. E02899-19, SUPPLEMENTAL MATERIAL, vol. 86, no. 7, 18 March 2020 (2020-03-18), US, pages 1 - 12, XP093042165, ISSN: 0099-2240, DOI: 10.1128/AEM.02899-19 * |
LINDE DOLORES ET AL: "Two New Unspecific Peroxygenases from Heterologous Expression of Fungal Genes in Escherichia coli", APPLIED AND ENVIRONMENTAL MICROBIOLOGY, ARTICLE NO. E02899-19, vol. 86, no. 7, 18 March 2020 (2020-03-18), US, XP093042151, ISSN: 0099-2240, DOI: 10.1128/AEM.02899-19 * |
MAREK J. PECYNA ET AL: "Molecular characterization of aromatic peroxygenase from Agrocybe aegerita", APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, vol. 84, no. 5, 1 October 2009 (2009-10-01), pages 885 - 897, XP055019355, ISSN: 0175-7598, DOI: 10.1007/s00253-009-2000-1 * |
MOLINA-ESPEJA ET AL., CHEMBIOCHEM, 2016 |
RAMIREZ-ESCUDERO ET AL., ACS CHEMICAL BIOLOGY, 2018 |
Also Published As
Publication number | Publication date |
---|---|
WO2024054111A1 (en) | 2024-03-14 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
Gotor-Fernández et al. | Deep eutectic solvents for redox biocatalysis | |
Ribeaucourt et al. | Biocatalytic oxidation of fatty alcohols into aldehydes for the flavors and fragrances industry | |
Kamimura et al. | Advances in microbial lignin degradation and its applications | |
Hall et al. | Enantioenriched compounds via enzyme-catalyzed redox reactions | |
Akacha et al. | Microbial and enzymatic technologies used for the production of natural aroma compounds: Synthesis, recovery modeling, and bioprocesses | |
de Gonzalo et al. | Recent developments in the application of Baeyer–Villiger monooxygenases as biocatalysts | |
Santaniello et al. | The biocatalytic approach to the preparation of enantiomerically pure chiral building blocks | |
Schrader et al. | Applied biocatalysis for the synthesis of natural flavour compounds–current industrial processes and future prospects | |
Kroutil et al. | Biocatalytic oxidation of primary and secondary alcohols | |
Napora‐Wijata et al. | Biocatalytic reduction of carboxylic acids | |
Li et al. | Oxidative biotransformations using oxygenases | |
Hall et al. | Asymmetric whole-cell bioreduction of an α, β-unsaturated aldehyde (citral): competing prim-alcohol dehydrogenase and C–C lyase activities | |
Schewe et al. | Biooxidation of monoterpenes with bacterial monooxygenases | |
Hou | Biotechnology for fats and oils: new oxygenated fatty acids | |
JP7489315B2 (en) | The formation of guaiene and rotundone. | |
Aranda et al. | Advances in enzymatic oxyfunctionalization of aliphatic compounds | |
Yaguchi et al. | Synthetic biology towards engineering microbial lignin biotransformation | |
Schmidt et al. | Baeyer-Villiger monooxygenases: From protein engineering to biocatalytic applications | |
Milagre et al. | Alcohol dehydrogenase-catalyzed oxidation | |
Schreier | Enzymes and flavour biotechnology | |
Liu et al. | Biotransfromation of Lignin into 4-Vinylphenol Derivatives toward Lignin Valorization | |
NL2032993B1 (en) | Oxidative lactonization of fatty acid derivatives by an oxidoreductase | |
Paul et al. | Applied biocatalysis in deep eutectic solvents | |
Robic et al. | Enzymes for industrial applications | |
Adam et al. | Biocatalytic synthesis of optically active oxyfunctionalized building blocks with enzymes, chemoenzymes and microorganisms |