MX2022015885A - Archivos de datos personalizado para medicina personalizada. - Google Patents

Archivos de datos personalizado para medicina personalizada.

Info

Publication number
MX2022015885A
MX2022015885A MX2022015885A MX2022015885A MX2022015885A MX 2022015885 A MX2022015885 A MX 2022015885A MX 2022015885 A MX2022015885 A MX 2022015885A MX 2022015885 A MX2022015885 A MX 2022015885A MX 2022015885 A MX2022015885 A MX 2022015885A
Authority
MX
Mexico
Prior art keywords
information
personalized medicine
custom data
data files
files
Prior art date
Application number
MX2022015885A
Other languages
English (en)
Inventor
Egan Jackson Lohman
Christopher Karl Edlund
Dwight Thomas Baker
Jeremy Joseph Ward
Original Assignee
Illumina Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Illumina Inc filed Critical Illumina Inc
Publication of MX2022015885A publication Critical patent/MX2022015885A/es

Links

Classifications

    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/50Compression of genetic data
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/40Encryption of genetic data
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16HHEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/60ICT specially adapted for the handling or processing of patient-related medical or healthcare data for patient-specific data, e.g. for electronic patient records
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F11/00Error detection; Error correction; Monitoring
    • G06F11/07Responding to the occurrence of a fault, e.g. fault tolerance
    • G06F11/08Error detection or correction by redundancy in data representation, e.g. by using checking codes
    • G06F11/10Adding special bits or symbols to the coded information, e.g. parity check, casting out 9's or 11's
    • G06F11/1004Adding special bits or symbols to the coded information, e.g. parity check, casting out 9's or 11's to protect a block of data words, e.g. CRC or checksum
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B10/00ICT specially adapted for evolutionary bioinformatics, e.g. phylogenetic tree construction or analysis
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/20Heterogeneous data integration
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16HHEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/20ICT specially adapted for the handling or processing of patient-related medical or healthcare data for electronic clinical trials or questionnaires
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16HHEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H20/00ICT specially adapted for therapies or health-improving plans, e.g. for handling prescriptions, for steering therapy or for monitoring patient compliance
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16HHEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H70/00ICT specially adapted for the handling or processing of medical references
    • G16H70/40ICT specially adapted for the handling or processing of medical references relating to drugs, e.g. their side effects or intended usage
    • HELECTRICITY
    • H04ELECTRIC COMMUNICATION TECHNIQUE
    • H04LTRANSMISSION OF DIGITAL INFORMATION, e.g. TELEGRAPHIC COMMUNICATION
    • H04L9/00Cryptographic mechanisms or cryptographic arrangements for secret or secure communications; Network security protocols
    • H04L9/32Cryptographic mechanisms or cryptographic arrangements for secret or secure communications; Network security protocols including means for verifying the identity or authority of a user of the system or for message authentication, e.g. authorization, entity authentication, data integrity or data verification, non-repudiation, key authentication or verification of credentials
    • H04L9/3236Cryptographic mechanisms or cryptographic arrangements for secret or secure communications; Network security protocols including means for verifying the identity or authority of a user of the system or for message authentication, e.g. authorization, entity authentication, data integrity or data verification, non-repudiation, key authentication or verification of credentials using cryptographic hash functions

Landscapes

  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Theoretical Computer Science (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Evolutionary Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Bioethics (AREA)
  • Genetics & Genomics (AREA)
  • Chemical & Material Sciences (AREA)
  • Computer Security & Cryptography (AREA)
  • Databases & Information Systems (AREA)
  • Public Health (AREA)
  • Primary Health Care (AREA)
  • Epidemiology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • General Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Medicinal Chemistry (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Toxicology (AREA)
  • Quality & Reliability (AREA)
  • Signal Processing (AREA)
  • General Physics & Mathematics (AREA)
  • Computer Networks & Wireless Communication (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Animal Behavior & Ethology (AREA)
  • Physiology (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)

Abstract

Se describen métodos y sistemas que pueden recolectar grandes conjuntos de datos a partir de tecnologías y dispositivos de secuenciación de ácido nucleico, filtrar la información genómica relevante y la información de variante de secuencia de muestras biológicas de archivos de diversos formatos, generar un archivo de datos personalizado que tiene solo información relevante en un formato estandarizado, y proporcionar la información generada para análisis corriente abajo para el uso de medicina personalizado.
MX2022015885A 2020-09-14 2021-09-10 Archivos de datos personalizado para medicina personalizada. MX2022015885A (es)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US202063078215P 2020-09-14 2020-09-14
PCT/US2021/049917 WO2022056293A1 (en) 2020-09-14 2021-09-10 Custom data files for personalized medicine

Publications (1)

Publication Number Publication Date
MX2022015885A true MX2022015885A (es) 2023-04-03

Family

ID=78372086

Family Applications (1)

Application Number Title Priority Date Filing Date
MX2022015885A MX2022015885A (es) 2020-09-14 2021-09-10 Archivos de datos personalizado para medicina personalizada.

Country Status (11)

Country Link
US (1) US20220084640A1 (es)
EP (1) EP4211693A1 (es)
JP (1) JP2023541341A (es)
KR (1) KR20230068361A (es)
CN (1) CN115917657A (es)
AU (1) AU2021342166A1 (es)
BR (1) BR112022024813A2 (es)
CA (1) CA3183745A1 (es)
IL (1) IL298101A (es)
MX (1) MX2022015885A (es)
WO (1) WO2022056293A1 (es)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20220414112A1 (en) * 2021-06-25 2022-12-29 Sap Se Metadata synchronization for cross system data curation

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040177082A1 (en) * 2001-06-22 2004-09-09 Kiyoshi Nitta Structured data processing apparatus
WO2013049420A1 (en) * 2011-09-27 2013-04-04 Maltbie Dan System and method for facilitating network-based transactions involving sequence data
US10122380B2 (en) * 2015-11-16 2018-11-06 International Business Machines Corporation Compression of javascript object notation data using structure information
MX2019004130A (es) * 2016-10-11 2020-01-30 Genomsys Sa Metodo y sistema para el acceso selectivo de datos bioinformaticos almacenados o transmitidos.
US20190026433A1 (en) * 2017-07-21 2019-01-24 James Lu Genomic services platform supporting multiple application providers

Also Published As

Publication number Publication date
KR20230068361A (ko) 2023-05-17
JP2023541341A (ja) 2023-10-02
EP4211693A1 (en) 2023-07-19
US20220084640A1 (en) 2022-03-17
WO2022056293A1 (en) 2022-03-17
CA3183745A1 (en) 2022-03-17
AU2021342166A1 (en) 2023-01-05
CN115917657A (zh) 2023-04-04
BR112022024813A2 (pt) 2023-03-28
IL298101A (en) 2023-01-01

Similar Documents

Publication Publication Date Title
Li et al. INC-Seq: accurate single molecule reads using nanopore sequencing
Balzer et al. Systematic exploration of error sources in pyrosequencing flowgram data
Li et al. IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling
Rückert et al. Clonal expansion and epigenetic inheritance of long-lasting NK cell memory
Vander Heiden et al. pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires
Lun et al. De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly
Loman et al. Poretools: a toolkit for analyzing nanopore sequence data
Kumar et al. Statistically identifying tumor suppressors and oncogenes from pan-cancer genome-sequencing data
Stewart et al. DIYA: a bacterial annotation pipeline for any genomics lab
Rieder et al. meRanTK: methylated RNA analysis ToolKit
Sun et al. SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing
Allhoff et al. Detecting differential peaks in ChIP-seq signals with ODIN
Yu et al. Human BDCA2+ CD123+ CD56+ dendritic cells (DCs) related to blastic plasmacytoid dendritic cell neoplasm represent a unique myeloid DC subset
MX2022015885A (es) Archivos de datos personalizado para medicina personalizada.
Wong et al. RepeatCraft: a meta-pipeline for repetitive element de-fragmentation and annotation
De Coster et al. Methplotlib: analysis of modified nucleotides from nanopore sequencing
Macher et al. Combining NCBI and BOLD databases for OTU assignment in metabarcoding and metagenomic datasets: The BOLD_NCBI _Merger
Oakley et al. Contrasting patterns of niche partitioning between two anaerobic terminal oxidizers of organic matter
da Silva et al. CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes
GB2597424A (en) Methods for enabling secured and personalised genomic sequence analysis
Martín-Peciña et al. Phylogenetic signal of genomic repeat abundances can be distorted by random homoplasy: a case study from hominid primates
Arora et al. Merkel cell polyomavirus in Merkel cell carcinoma: Integration sites and involvement of the KMT2D tumor suppressor gene
CA2946289C (en) Systems and methods for rna analysis in functional confirmation of cancer mutations
Zhong et al. Jasmine: a Java pipeline for isomiR characterization in miRNA-Seq data
Ye et al. Interpreting and visualizing ChIP-seq data with the seqMINER software