MX2019009680A - Metodo y aparato para la representacion compacta de datos de bioinformatica mediante el uso de multiples descriptores genomicos. - Google Patents
Metodo y aparato para la representacion compacta de datos de bioinformatica mediante el uso de multiples descriptores genomicos.Info
- Publication number
- MX2019009680A MX2019009680A MX2019009680A MX2019009680A MX2019009680A MX 2019009680 A MX2019009680 A MX 2019009680A MX 2019009680 A MX2019009680 A MX 2019009680A MX 2019009680 A MX2019009680 A MX 2019009680A MX 2019009680 A MX2019009680 A MX 2019009680A
- Authority
- MX
- Mexico
- Prior art keywords
- data
- compact representation
- multiple genomic
- bioinformatics data
- class
- Prior art date
Links
Classifications
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/50—Compression of genetic data
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
- G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
- G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F7/00—Methods or arrangements for processing data by operating upon the order or content of the data handled
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F7/00—Methods or arrangements for processing data by operating upon the order or content of the data handled
- G06F7/58—Random or pseudo-random number generators
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/10—Ontologies; Annotations
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/30—Data warehousing; Computing architectures
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B99/00—Subject matter not provided for in other groups of this subclass
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- H—ELECTRICITY
- H04—ELECTRIC COMMUNICATION TECHNIQUE
- H04L—TRANSMISSION OF DIGITAL INFORMATION, e.g. TELEGRAPHIC COMMUNICATION
- H04L9/00—Cryptographic mechanisms or cryptographic arrangements for secret or secure communications; Network security protocols
- H04L9/08—Key distribution or management, e.g. generation, sharing or updating, of cryptographic keys or passwords
- H04L9/0861—Generation of secret information including derivation or calculation of cryptographic keys or passwords
- H04L9/0866—Generation of secret information including derivation or calculation of cryptographic keys or passwords involving user or device identifiers, e.g. serial number, physical or biometrical information, DNA, hand-signature or measurable physical characteristics
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- H—ELECTRICITY
- H04—ELECTRIC COMMUNICATION TECHNIQUE
- H04L—TRANSMISSION OF DIGITAL INFORMATION, e.g. TELEGRAPHIC COMMUNICATION
- H04L9/00—Cryptographic mechanisms or cryptographic arrangements for secret or secure communications; Network security protocols
- H04L9/30—Public key, i.e. encryption algorithm being computationally infeasible to invert or user's encryption keys not requiring secrecy
- H04L9/3066—Public key, i.e. encryption algorithm being computationally infeasible to invert or user's encryption keys not requiring secrecy involving algebraic varieties, e.g. elliptic or hyper-elliptic curves
- H04L9/3073—Public key, i.e. encryption algorithm being computationally infeasible to invert or user's encryption keys not requiring secrecy involving algebraic varieties, e.g. elliptic or hyper-elliptic curves involving pairings, e.g. identity based encryption [IBE], bilinear mappings or bilinear pairings, e.g. Weil or Tate pairing
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- H—ELECTRICITY
- H04—ELECTRIC COMMUNICATION TECHNIQUE
- H04L—TRANSMISSION OF DIGITAL INFORMATION, e.g. TELEGRAPHIC COMMUNICATION
- H04L2209/00—Additional information or applications relating to cryptographic mechanisms or cryptographic arrangements for secret or secure communication H04L9/00
- H04L2209/30—Compression, e.g. Merkle-Damgard construction
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- H—ELECTRICITY
- H04—ELECTRIC COMMUNICATION TECHNIQUE
- H04L—TRANSMISSION OF DIGITAL INFORMATION, e.g. TELEGRAPHIC COMMUNICATION
- H04L2209/00—Additional information or applications relating to cryptographic mechanisms or cryptographic arrangements for secret or secure communication H04L9/00
- H04L2209/34—Encoding or coding, e.g. Huffman coding or error correction
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- H—ELECTRICITY
- H04—ELECTRIC COMMUNICATION TECHNIQUE
- H04L—TRANSMISSION OF DIGITAL INFORMATION, e.g. TELEGRAPHIC COMMUNICATION
- H04L2209/00—Additional information or applications relating to cryptographic mechanisms or cryptographic arrangements for secret or secure communication H04L9/00
- H04L2209/88—Medical equipments
Landscapes
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Life Sciences & Earth Sciences (AREA)
- Theoretical Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Medical Informatics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Health & Medical Sciences (AREA)
- Evolutionary Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- General Physics & Mathematics (AREA)
- Bioethics (AREA)
- Databases & Information Systems (AREA)
- Chemical & Material Sciences (AREA)
- General Engineering & Computer Science (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Data Mining & Analysis (AREA)
- Artificial Intelligence (AREA)
- Evolutionary Computation (AREA)
- Software Systems (AREA)
- Public Health (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Epidemiology (AREA)
- Computer Security & Cryptography (AREA)
- Computer Networks & Wireless Communication (AREA)
- Signal Processing (AREA)
- Pure & Applied Mathematics (AREA)
- Mathematical Optimization (AREA)
- Mathematical Analysis (AREA)
- Genetics & Genomics (AREA)
- Mathematical Physics (AREA)
- Computing Systems (AREA)
- Molecular Biology (AREA)
- Computational Mathematics (AREA)
- Algebra (AREA)
- Human Computer Interaction (AREA)
Abstract
Método y aparato para la compresión de datos de secuencias de genomas producidos por máquinas de secuenciación del genoma. Las lecturas de secuencias se codifican mediante su alineación con respecto a secuencias de referencia preexistentes o construidas, en donde el proceso de codificación está compuesto por una clasificación de las lecturas en clases de datos, a lo cual sigue la codificación de cada clase en términos de una multiplicidad de bloques de descriptores. Se utilizan modelos fuente y codificadores de entropía específicos para cada clase de datos en los que se dividen los datos y para cada bloque de descriptor asociado.
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
PCT/US2017/017842 WO2018071055A1 (en) | 2016-10-11 | 2017-02-14 | Method and apparatus for the compact representation of bioinformatics data |
PCT/US2017/041591 WO2018071080A2 (en) | 2016-10-11 | 2017-07-11 | Method and systems for the representation and processing of bioinformatics data using reference sequences |
PCT/US2018/018092 WO2018152143A1 (en) | 2017-02-14 | 2018-02-14 | Method and apparatus for the compact representation of bioinformatics data using multiple genomic descriptors |
Publications (1)
Publication Number | Publication Date |
---|---|
MX2019009680A true MX2019009680A (es) | 2019-10-09 |
Family
ID=68609803
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
MX2019009680A MX2019009680A (es) | 2017-02-14 | 2018-02-14 | Metodo y aparato para la representacion compacta de datos de bioinformatica mediante el uso de multiples descriptores genomicos. |
Country Status (10)
Country | Link |
---|---|
EP (1) | EP3583500A4 (es) |
KR (1) | KR20190113971A (es) |
AU (1) | AU2018221458B2 (es) |
CA (1) | CA3052824A1 (es) |
EA (1) | EA201991908A1 (es) |
IL (1) | IL268651A (es) |
MX (1) | MX2019009680A (es) |
SG (1) | SG11201907418YA (es) |
WO (1) | WO2018152143A1 (es) |
ZA (1) | ZA201905921B (es) |
Families Citing this family (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN110189830B (zh) * | 2019-05-24 | 2021-06-08 | 杭州火树科技有限公司 | 基于机器学习的电子病历词库训练方法 |
EP3896698A1 (en) | 2020-04-15 | 2021-10-20 | Genomsys SA | Method and system for the efficient data compression in mpeg-g |
KR102497634B1 (ko) * | 2020-12-21 | 2023-02-08 | 부산대학교 산학협력단 | 문자 빈도 기반 서열 재정렬을 통한 fastq 데이터 압축 방법 및 장치 |
Family Cites Families (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP1383911A4 (en) * | 2001-04-02 | 2004-12-15 | Cytoprint Inc | METHOD AND APPARATUS FOR DISCOVERING, IDENTIFYING AND COMPARING BIOLOGICAL ACTIVITY MECHANISMS |
US7698067B2 (en) * | 2002-02-12 | 2010-04-13 | International Business Machines Corporation | Sequence pattern descriptors for transmembrane structural details |
US7809765B2 (en) * | 2007-08-24 | 2010-10-05 | General Electric Company | Sequence identification and analysis |
KR101922129B1 (ko) * | 2011-12-05 | 2018-11-26 | 삼성전자주식회사 | 차세대 시퀀싱을 이용하여 획득된 유전 정보를 압축 및 압축해제하는 방법 및 장치 |
US9679104B2 (en) * | 2013-01-17 | 2017-06-13 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
CN103336916B (zh) * | 2013-07-05 | 2016-04-06 | 中国科学院数学与系统科学研究院 | 一种测序序列映射方法及系统 |
US10902937B2 (en) * | 2014-02-12 | 2021-01-26 | International Business Machines Corporation | Lossless compression of DNA sequences |
-
2018
- 2018-02-14 SG SG11201907418YA patent/SG11201907418YA/en unknown
- 2018-02-14 EA EA201991908A patent/EA201991908A1/ru unknown
- 2018-02-14 CA CA3052824A patent/CA3052824A1/en active Pending
- 2018-02-14 KR KR1020197026877A patent/KR20190113971A/ko not_active Application Discontinuation
- 2018-02-14 MX MX2019009680A patent/MX2019009680A/es unknown
- 2018-02-14 WO PCT/US2018/018092 patent/WO2018152143A1/en unknown
- 2018-02-14 EP EP18753700.6A patent/EP3583500A4/en active Pending
- 2018-02-14 AU AU2018221458A patent/AU2018221458B2/en active Active
-
2019
- 2019-08-12 IL IL26865119A patent/IL268651A/en unknown
- 2019-09-09 ZA ZA2019/05921A patent/ZA201905921B/en unknown
Also Published As
Publication number | Publication date |
---|---|
EA201991908A1 (ru) | 2020-01-21 |
EP3583500A4 (en) | 2020-12-16 |
SG11201907418YA (en) | 2019-09-27 |
NZ757185A (en) | 2021-05-28 |
EP3583500A1 (en) | 2019-12-25 |
AU2018221458B2 (en) | 2022-12-08 |
CA3052824A1 (en) | 2018-08-23 |
WO2018152143A1 (en) | 2018-08-23 |
IL268651A (en) | 2019-10-31 |
ZA201905921B (en) | 2021-05-26 |
KR20190113971A (ko) | 2019-10-08 |
AU2018221458A1 (en) | 2019-10-03 |
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