KR102365852B1 - Kit for detecting carbapenemase-producing enterobacteriaceae comprising fluorescent probe and method for detecting carbapenemase-producing enterobacteriaceae using the same - Google Patents

Kit for detecting carbapenemase-producing enterobacteriaceae comprising fluorescent probe and method for detecting carbapenemase-producing enterobacteriaceae using the same Download PDF

Info

Publication number
KR102365852B1
KR102365852B1 KR1020190176796A KR20190176796A KR102365852B1 KR 102365852 B1 KR102365852 B1 KR 102365852B1 KR 1020190176796 A KR1020190176796 A KR 1020190176796A KR 20190176796 A KR20190176796 A KR 20190176796A KR 102365852 B1 KR102365852 B1 KR 102365852B1
Authority
KR
South Korea
Prior art keywords
methyl
oxo
carbapenem
kit
detecting
Prior art date
Application number
KR1020190176796A
Other languages
Korean (ko)
Other versions
KR20210083966A (en
Inventor
백계승
김기태
민선준
김주현
이강주
박연준
Original Assignee
주식회사 노블바이오
한양대학교 에리카산학협력단
가톨릭대학교 산학협력단
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by 주식회사 노블바이오, 한양대학교 에리카산학협력단, 가톨릭대학교 산학협력단 filed Critical 주식회사 노블바이오
Priority to KR1020190176796A priority Critical patent/KR102365852B1/en
Publication of KR20210083966A publication Critical patent/KR20210083966A/en
Application granted granted Critical
Publication of KR102365852B1 publication Critical patent/KR102365852B1/en

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
    • C12Q1/04Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
    • CCHEMISTRY; METALLURGY
    • C09DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
    • C09KMATERIALS FOR MISCELLANEOUS APPLICATIONS, NOT PROVIDED FOR ELSEWHERE
    • C09K11/00Luminescent, e.g. electroluminescent, chemiluminescent materials
    • C09K11/06Luminescent, e.g. electroluminescent, chemiluminescent materials containing organic luminescent materials
    • CCHEMISTRY; METALLURGY
    • C09DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
    • C09KMATERIALS FOR MISCELLANEOUS APPLICATIONS, NOT PROVIDED FOR ELSEWHERE
    • C09K2211/00Chemical nature of organic luminescent or tenebrescent compounds
    • C09K2211/10Non-macromolecular compounds
    • C09K2211/1018Heterocyclic compounds
    • C09K2211/1022Heterocyclic compounds bridged by heteroatoms, e.g. N, P, Si or B
    • CCHEMISTRY; METALLURGY
    • C09DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
    • C09KMATERIALS FOR MISCELLANEOUS APPLICATIONS, NOT PROVIDED FOR ELSEWHERE
    • C09K2211/00Chemical nature of organic luminescent or tenebrescent compounds
    • C09K2211/10Non-macromolecular compounds
    • C09K2211/1018Heterocyclic compounds
    • C09K2211/1025Heterocyclic compounds characterised by ligands
    • C09K2211/1029Heterocyclic compounds characterised by ligands containing one nitrogen atom as the heteroatom
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2334/00O-linked chromogens for determinations of hydrolase enzymes, e.g. glycosidases, phosphatases, esterases
    • C12Q2334/20Coumarin derivatives
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Abstract

본 발명은 용해 버퍼(lysis buffer), 반응 버퍼(reaction buffer) 및 형광 프로브(fluorescent probe) 기질을 포함하는 카바페넴 분해효소 생성 장내세균(carbapenemase-producing enterobacteriaceae)을 검출하기 위한 키트 및 상기 키트를 이용한 카바페넴 분해효소 생성 장내세균의 검출 방법에 관한 것이다.The present invention provides a kit for detecting carbapenemase-producing enterobacteriaceae containing a lysis buffer, a reaction buffer, and a fluorescent probe substrate, and a kit using the kit The present invention relates to a method for detecting carbapenem-degrading enzyme-producing enterobacteria.

Description

형광 프로브를 포함하는 카바페넴 분해효소 생성 장내세균 검출용 키트 및 이를 이용한 카바페넴 분해효소 생성 장내세균 검출 방법{Kit for detecting carbapenemase-producing enterobacteriaceae comprising fluorescent probe and method for detecting carbapenemase-producing enterobacteriaceae using the same}Kit for detecting carbapenemase-producing enterobacteriaceae comprising fluorescent probe and method for detecting carbapenemase-producing enterobacteriaceae using the same

본 발명은 형광 프로브를 포함하는 카바페넴 분해효소 생성 장내세균 검출용 키트 및 이를 이용한 카바페넴 분해효소 생성 장내세균 검출 방법에 관한 것이다.The present invention relates to a kit for detecting carbapenem-degrading enterobacteriaceae containing a fluorescent probe and a method for detecting carbapenem-degrading enterobacteriaceae using the same.

카바페넴(Carbapenem)은 항균 영역이 넓은 항생제로, 광범위 베타-락탐 분해효소(extended spectrum beta-lactamase)를 생성하는 그람음성 세균 감염을 치료하는데 사용되는 항생제이다. 최근 항생제 내성이 증가하면서 카바페넴 항균제 사용이 증가함에 따라 카바페넴에 내성을 갖는 장내세균속균종(carbapenem-resistant enterobacteriaceae, CRE)이 등장하였고, 전세계적으로 빠른 속도로 증가하는 양상을 보이고 있다. 특히, CRE에 의한 감염증은 항생제 내성이 없는 장내세균속 감염증과 비교하여 사망률이 높은 것으로 알려져 있다.Carbapenem is an antibiotic with a broad antibacterial spectrum, and is an antibiotic used to treat gram-negative bacterial infections that produce extended spectrum beta-lactamase. With the recent increase in antibiotic resistance and the increase in the use of carbapenem antibacterial agents, carbapenem-resistant enterobacteriaceae (CRE) have emerged and are rapidly increasing worldwide. In particular, it is known that CRE-induced infections have a higher mortality rate than those of Enterobacteriaceae that are not resistant to antibiotics.

장내세균속균종은 카바페넴 분해효소를 직접 가지고 있거나, 어타페넴(ertapenem), 이미페넴(imipenem), 메로페넴(meropenem) 및 도리페넴(doripenem) 중 어느 한가지 이상의 항균제에 내성을 보이는 경우로 정의한다. 장내세균속균종은 카바페넴의 내성 기전에 따라 카바페넴 분해효소 생성 유전자를 가지고 있어 카바페넴 분해효소를 형성하는 경우(carbapenemase-producing enterobacteriaceae, CPE)와 카바페넴 분해효소 생성 없이 여러가지 내성 기전에 복합되어 카파베넴에 내성(Non-CPE)을 보이는 경우로 분류할 수 있다. 카바페넴을 직접 분해하는 CPE 내성기준은 Ambler class에 따라서 A, B 및 D 타입으로 구분할 수 있다. 카바페넴 분해효소를 생성하지 않고 카바페넴에 내성을 보이는 장내세균속(Non-CPE)의 경우 광범위 베타락탐 분해효소, 포린(porin) 변화를 통한 막 투과성 변화, 유출 펌프(efflux pump) 활성화 등 여러 내성기전의 복합으로 카바페넴에 대해 내성을 보인다.Enterobacteriaceae is defined as a case that has a carbapenem-degrading enzyme directly or is resistant to any one or more antibacterial agents among ertapenem, imipenem, meropenem, and doripenem. Enterobacteriaceae species have a carbapenem-degrading enzyme-producing gene according to the carbapenem resistance mechanism, and thus form a carbapenemase-producing enterobacteriaceae (CPE) and are combined with various resistance mechanisms without carbapenem-degrading enzyme production. It can be classified as a case showing resistance to carpabenem (Non-CPE). CPE resistance standards that directly degrade carbapenem can be divided into A, B, and D types according to the Ambler class. In the case of Enterobacteriaceae (Non-CPE), which do not produce carbapenem-degrading enzymes and are resistant to carbapenems, various It shows resistance to carbapenem due to a combination of resistance mechanisms.

카바페넴 분해효소 생성균인 CPE는 항생제 감수성 시험만으로는 Non-CPE와 감별할 수 없어 카바페넴 분해효소 선별시험 및 확정시험이 필요하다. 항생제 감수성에서 카바페넴에 내성을 보이는 경우 CRE로 분류한다. 이후에 CPE 여부를 확인하기 위해서 modified-Hodge 시험(MHT) 및 카바페넴아제 억제시험(CIT)을 통한 표현형 시험 또는 유전자 증폭을 통한 유전형 시험(PCR 혹은 DNA 염기서열 분석)을 시행한다. 그러나, 표현형 시험은 비교적 확인이 빠르나 판단이 주관적일 수 있고 내성 유전자 종류를 확인할 수 없으며 위양성(false positive)의 가능성을 배제하기 어려운 단점이 있다. 또한 유전형 시험은 비용이 고가이고 검출할 수 있는 유전자의 종류가 한정되어 있는 단점이 있다. 따라서, 보다 신속하고 정확하게 다양한 카바페넴 분해효소 생성균들을 검출할 수 있는 검사에 대한 요구가 증가되고 있다.CPE, a carbapenem-degrading enzyme-producing bacterium, cannot be differentiated from non-CPE only by antibiotic susceptibility testing, so a carbapenem-degrading enzyme screening test and confirmation test are required. In case of antibiotic susceptibility to carbapenem resistance, it is classified as CRE. Thereafter, to confirm CPE, a phenotypic test using a modified-Hodge test (MHT) and a carbapenemase inhibition test (CIT) or a genotyping test (PCR or DNA sequencing analysis) through gene amplification are performed. However, although the phenotype test is relatively quick to confirm, the judgment may be subjective, the type of resistance gene cannot be confirmed, and it is difficult to exclude the possibility of false positives. In addition, the genotyping test has disadvantages in that it is expensive and the types of genes that can be detected are limited. Accordingly, there is an increasing demand for tests capable of more rapidly and accurately detecting various carbapenem-degrading enzyme-producing bacteria.

한편, 한국등록특허 제1317263호에는 "리얼타임 PCR을 이용한 카바페넴 내성 장내균 검사 방법 및 키트"가 개시되어 있고, 한국등록특허 제1995622호에는 "ADK 단백질을 유효성분으로 포함하는 카바페넴 내성 그람음성균에 대한 항균용 조성물"이 개시되어 있으나, 본 발명의 형광 프로브를 포함하는 카바페넴 분해효소 생성 장내세균 검출용 키트 및 이를 이용한 카바페넴 분해효소 생성 장내세균 검출 방법에 대해서는 기재된 바가 없다.Meanwhile, Korean Patent No. 1317263 discloses "a method and kit for testing carbapenem-resistant Enterobacteriaceae using real-time PCR", and Korean Patent No. 19955622 discloses "Carbapenem-resistant Gram-negative bacteria containing ADK protein as an active ingredient" antibacterial composition for ", but the kit for detecting carbapenem-degrading enterobacteriaceae containing the fluorescent probe of the present invention and a method for detecting carbapenem-degrading enterobacteriaceae using the same have not been described.

본 발명은 상기와 같은 요구에 의해 도출된 것으로서, 본 발명자들은 카바페넴 분해효소(carbapenemase)를 생성하는 내성 미생물을 신속하고 정확하게 검출할 수 있는 키트 및 방법을 제공하기 위해, 카바페넴 골격(backbone)에 벤질 알코올 링커 및 움벨리페론(umbelliferone) 형광체가 결합된 신규한 형광 프로브(fluorescent probe)를 기질로 포함하는 키트를 제조한 후, 제조된 키트를 사용하여 카바페넴 분해효소 유전자를 가진 장내세균(CPE) 65종 및 카바페넴 분해효소 유전자를 갖지 않은 장내세균 156종에 대한 분석을 수행한 결과, 본 발명의 키트가 카바페넴 분해효소 생성 장내세균에 대한 민감도 및 특이도가 우수함을 확인함으로써, 본 발명을 완성하였다.The present invention was derived from the above needs, and the present inventors have provided a kit and method capable of rapidly and accurately detecting a resistant microorganism that produces carbapenemase, a carbapenem backbone. After preparing a kit containing a novel fluorescent probe to which an ebenzyl alcohol linker and an umbelliferone fluorophore are bound as a substrate, enterobacteriaceae having a carbapenem-degrading enzyme gene ( As a result of analysis of 65 CPE) and 156 Enterobacteriaceae that do not have a carbapenem degrading enzyme gene, it was confirmed that the kit of the present invention has excellent sensitivity and specificity to carbapenem-degrading enterobacteriaceae. The invention was completed.

상기 과제를 해결하기 위해, 본 발명은 용해 버퍼(lysis buffer), 반응 버퍼(reaction buffer) 및 형광 프로브(fluorescent probe) 기질을 포함하는 카바페넴 분해효소 생성 장내세균(carbapenemase-producing enterobacteriaceae)을 검출하기 위한 키트를 제공한다.In order to solve the above problems, the present invention is to detect carbapenemase-producing enterobacteriaceae containing a lysis buffer, a reaction buffer, and a fluorescent probe substrate. kits are provided for

또한, 본 발명은 카바페넴 내성균 감염 의심 환자로부터 분리된 생물학적 시료를 용해 버퍼로 전처리하는 단계; 상기 용해 버퍼로 전처리된 시료를 원심분리하여 상층액을 수득하는 단계; 및 상기 수득한 상층액을 반응 버퍼 및 형광 프로브 기질과 혼합하여 반응시킨 후 형광값을 측정하는 단계;를 포함하는 카바페넴 분해효소 생성 장내세균을 검출하는 방법을 제공한다.In addition, the present invention comprises the steps of pre-treating a biological sample isolated from a patient suspected of carbapenem-resistant bacterial infection with a lysis buffer; centrifuging the sample pretreated with the lysis buffer to obtain a supernatant; and measuring the fluorescence value after mixing the obtained supernatant with a reaction buffer and a fluorescent probe substrate to react.

본 발명의 카바페넴 형광 프로브 기질을 포함하는 키트는 IMP(active on imipenem), VIM(verona integron-encoded metallo-β-lactamasea), NDM(new delhi metallo-β-lactamase), KPC(Klebsiella pneumoniae carbapenemase) 등과 같은 다양한 카바페넴 분해효소를 생산하는 카바페넴 내성 장내세균(CRE)들을 간단하고 신속·정확하게 검출할 수 있으므로, 카바페넴 내성 장내세균의 감염 여부를 조기에 진단하여 CRE 감염 질환의 초기에 신속한 대응·관리에 유용하게 활용될 수 있을 것으로 기대된다. Kits containing the carbapenem fluorescent probe substrate of the present invention include active on imipenem (IMP), verona integron-encoded metallo-β-lactamasea (VIM), new delhi metallo-β-lactamase (NDM), and Klebsiella pneumoniae carbapenemase (KPC). Since carbapenem-resistant enterobacteriaceae (CREs) that produce various carbapenem-degrading enzymes such as carbapenem-degrading enzymes can be detected simply, quickly and accurately, early diagnosis of carbapenem-resistant enterobacteriaceae and prompt response to CRE-infected diseases · It is expected to be useful for management.

도 1은 본 발명의 카바페넴 분해효소 생성 장내세균(carbapenemase-producing enterobacteriaceae) 검출용 키트 제품의 구성 요소를 보여주는 사진이다.
도 2는 본 발명의 카바페넴 분해효소 생성 장내세균 검출용 키트를 이용하여 카바페넴 내성 장내세균의 감염 여부 진단을 위한 ROC(receiver operating characteristic curve) 곡선 분석을 수행한 결과이다.
1 is a photograph showing the components of the kit product for detecting carbapenemase-producing enterobacteriaceae of the present invention.
2 is a result of performing a receiver operating characteristic curve (ROC) curve analysis for diagnosing whether carbapenem-resistant enterobacteria are infected by using the kit for detecting carbapenem-degrading enterobacteriaceae of the present invention.

본 발명의 목적을 달성하기 위하여, 본 발명은 용해 버퍼(lysis buffer), 반응 버퍼(reaction buffer) 및 형광 프로브(fluorescent probe) 기질을 포함하는 카바페넴 분해효소 생성 장내세균(carbapenemase-producing enterobacteriaceae)을 검출하기 위한 키트를 제공한다.In order to achieve the object of the present invention, the present invention provides carbapenemase-producing enterobacteriaceae comprising a lysis buffer, a reaction buffer, and a fluorescent probe substrate. A kit for detecting is provided.

본 발명의 키트에서, 상기 용해 버퍼는 카바페넴 분해효소 생성 장내세균으로부터 단백질(효소)을 추출하기 위함으로 바람직하게는, EDTA(Ethylenediaminetetraacetic acid), 프로테아제 억제제(Protease inhibitor), CHAPS(3-[(3-Cholamidopropyl)dimethylammonio]-1-propanesulfonate hydrate), 라이소자임(lysozyme), DNase(deoxyribonuclease) 및 PBS(phosphate buffered saline)로 이루어진 것일 수 있고, 더욱 바람직하게는 0.01~0.6mM의 EDTA, 3~5%(w/v)의 프로테아제 억제제, 0.5~2%(w/v)의 CHAPS, 0.05~1mg/㎖의 라이소자임, 4~6U/㎖의 DNaseⅠ 및 9~11mM의 PBS로 이루어진 것일 수 있으며, 가장 바람직하게는 0.012mM의 EDTA, 4%(w/v)의 프로테아제 억제제, 1%(w/v)의 CHAPS, 0.1mg/㎖의 라이소자임, 5U/㎖의 DNaseⅠ 및 10mM의 PBS로 이루어진 것일 수 있으나, 이에 제한되지 않는다.In the kit of the present invention, the lysis buffer is for extracting protein (enzyme) from carbapenem-degrading enzyme-producing enterobacteria. Preferably, EDTA (Ethylenediaminetetraacetic acid), protease inhibitor, CHAPS (3-[( 3-Cholamidopropyl) dimethylammonio] -1-propanesulfonate hydrate), lysozyme, DNase (deoxyribonuclease) and PBS (phosphate buffered saline), more preferably 0.01 to 0.6 mM EDTA, 3 to 5% (w/v) protease inhibitor, 0.5-2% (w/v) CHAPS, 0.05-1mg/ml lysozyme, 4-6U/ml DNaseI and 9-11mM PBS, most preferably It may consist of 0.012 mM EDTA, 4% (w/v) protease inhibitor, 1% (w/v) CHAPS, 0.1 mg/mL lysozyme, 5 U/mL DNase I and 10 mM PBS, It is not limited thereto.

본 발명의 키트에서, 상기 반응 버퍼는 본 발명에 따른 형광 프로브 기질과 카바페넴 분해효소가 반응할 수 있는 환경을 제공하는 효소 반응 용액으로 바람직하게는, NaCl(sodium chloride), Na2HPO4(sodium phosphate dibasic), KCl(potassium chloride) 및 KH2PO4(potassium phosphate monobasic)로 이루어진 것일 수 있고, 더욱 바람직하게는 0.1~0.2M의 NaCl, 1~3mM의 Na2HPO4, 2~4mM의 KCl 및 10~12mM의 KH2PO4로 이루어진 것일 수 있으며, 가장 바람직하게는 0.14M의 NaCl, 1.7mM의 Na2HPO4, 2.7mM의 KCl 및 10.6mM의 KH2PO4로 이루어진 것일 수 있으나, 이에 제한되지 않는다.In the kit of the present invention, the reaction buffer is an enzyme reaction solution that provides an environment in which the fluorescent probe substrate according to the present invention and the carbapenem degrading enzyme can react. Preferably, sodium chloride (NaCl), Na 2 HPO 4 ( sodium phosphate dibasic), KCl (potassium chloride) and KH 2 PO 4 (potassium phosphate monobasic), more preferably 0.1 to 0.2M NaCl, 1-3mM Na 2 HPO 4 , 2 to 4mM of It may consist of KCl and 10-12mM KH 2 PO 4 , and most preferably 0.14M NaCl, 1.7 mM Na 2 HPO 4 , 2.7 mM KCl and 10.6 mM KH 2 PO 4 It may be composed of , but not limited thereto.

본 발명의 키트에서, 상기 형광 프로브 기질은 카바페넴 골격에 벤질 알코올(benzyl alcohol) 링커와 움벨리페론(umbelliferone) 형광체가 결합된 화합물로, 바람직하게는 하기 화학식 1로 표시되는 (4S,5R,6S)-6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid 화합물이다. In the kit of the present invention, the fluorescent probe substrate is a compound in which a benzyl alcohol linker and an umbelliferone fluorescent substance are bound to a carbapenem backbone, preferably (4S, 5R, 6S)-6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy) methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid.

Figure 112019134976004-pat00001
Figure 112019134976004-pat00001

상기 카바페넴 골격, 링커 및 형광체가 순차적으로 결합된 형광 프로브 기질은 카바페넴 분해효소, 예컨대 KPC(Klebsiella pneumoniae carbapenemase), GES(guiana extended-spectrum β-lactamase), IMP(active on imipenem), VIM(verona integron-encoded metallo-β-lactamasea), NDM(new delhi metallo-β-lactamase) 또는 OXA(oxacillinase)에 의해 카바페넴 골격과 형광체를 연결하는 링커 부분이 절담됨으로써 형광체가 발광하는 것일 수 있으나, 이에 제한되지 않는다.The fluorescent probe substrate to which the carbapenem skeleton, the linker, and the fluorophore are sequentially bound is a carbapenem degrading enzyme, such as Klebsiella pneumoniae carbapenemase (KPC), guiana extended-spectrum β-lactamase (GES), active on imipenem (IMP), and VIM (active on imipenem) (VIM). Verona integron-encoded metallo-β-lactamasea), NDM (new delhi metallo-β-lactamase), or OXA (oxacillinase) may cause the phosphor to emit light because the linker portion connecting the carbapenem skeleton and the phosphor is cut. not limited

본 발명은 또한, The present invention also

카바페넴 내성균 감염 의심 환자로부터 분리된 생물학적 시료를 용해 버퍼(lysis buffer)로 전처리하는 단계;pre-treating a biological sample isolated from a patient suspected of being infected with carbapenem-resistant bacteria with a lysis buffer;

상기 용해 버퍼로 전처리된 시료를 원심분리하여 상층액을 수득하는 단계; 및centrifuging the sample pretreated with the lysis buffer to obtain a supernatant; and

상기 수득한 상층액을 반응 버퍼(reaction buffer) 및 형광 프로브(fluorescent probe) 기질과 혼합하여 반응시킨 후 형광값을 측정하는 단계;를 포함하는 카바페넴 분해효소 생성 장내세균(carbapenemase-producing enterobacteriaceae)을 검출하는 방법을 제공한다.Carbapenemase-producing enterobacteriaceae, comprising the step of measuring the fluorescence value after mixing the obtained supernatant with a reaction buffer and a fluorescent probe substrate A method of detection is provided.

본 발명의 일 구현 예에 따른 방법에 있어서, 상기 용해 버퍼 및 반응 버퍼는 상기 전술한 것과 같다.In the method according to an embodiment of the present invention, the dissolution buffer and the reaction buffer are the same as described above.

본 발명의 일 구현 예에 따른 방법에 있어서, 상기 형광 프로브 기질은 바람직하게는 하기 화학식 1로 표시되는 (4S,5R,6S)-6-((R)-1-하이드록시에틸-4-메틸-7-옥소-3-((4-(((2-옥소-2H-크로멘-7-일)옥시)메틸)페녹시)메틸)-1-아자바이사이클로[3.2.0]헵트-2-엔-2-카복실산[(4S,5R,6S)-6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid] 화합물이다.In the method according to an embodiment of the present invention, the fluorescent probe substrate is preferably (4S,5R,6S)-6-((R)-1-hydroxyethyl-4-methyl represented by the following Chemical Formula 1 -7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2 -ene-2-carboxylic acid [(4S,5R,6S)-6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H- chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid].

본 발명에서 용어 "생물학적 시료"란, 세포, 조직, 혈액, 조직 부검 시료(뇌, 피부, 림프절, 척수 등), 세포 배양 상등액, 파열된 진핵세포, 파라핀조직, 소변, 타액, 땀, 세포내 체액 및 세균 발현계 등을 들 수 있고, 혈액은 전혈, 혈장, 혈청이나 소정의 처리(예를 들면 응고 방지)가 이루어진 혈액, 혈장, 혈청 등이 이에 해당될 수 있으나, 이에 제한되지 않는다. 이들 생물학적 시료를 조작하거나 조작하지 않은 상태로 본 발명의 키트와 반응시켜 카바페넴 분해효소 생성 장내세균의 감염 유무를 확인할 수 있다.As used herein, the term "biological sample" means cells, tissues, blood, tissue autopsy samples (brain, skin, lymph nodes, spinal cord, etc.), cell culture supernatant, ruptured eukaryotic cells, paraffin tissue, urine, saliva, sweat, intracellular body fluids and bacterial expression systems, and the like, and the blood may include, but is not limited to, whole blood, plasma, serum, or blood, plasma, and serum that has been subjected to a predetermined treatment (eg, to prevent coagulation). The presence or absence of infection with carbapenem-degrading enzyme-producing enterobacteria can be checked by reacting these biological samples with the kit of the present invention in a manipulated or non-manipulated state.

본 발명의 일 구현 예에 따른 방법에 있어서, 상기 카바페넴 내성균 감염 의심 환자로부터 분리된 생물학적 시료는 환자로부터 분리된 생물학적 시료를 배지에 접종하여 시료 내 미생물을 증균한 후 배지에서 증식된 미생물 일부를 채취한 것일 수 있으나, 이에 제한되지 않는다.In the method according to one embodiment of the present invention, the biological sample isolated from the patient suspected of being infected with carbapenem-resistant bacteria is inoculated with the biological sample isolated from the patient to enrich the microorganisms in the sample, and then a part of the microorganisms proliferated in the medium It may be collected, but is not limited thereto.

본 발명의 일 구현 예에 따른 방법에 있어서, 상기 카바페넴 분해효소 생성 장내세균을 검출하는 방법은 구체적으로는,In the method according to an embodiment of the present invention, the method for detecting carbapenem-degrading enzyme-producing enterobacteria comprises:

카바페넴 내성균 감염 의심 환자로부터 분리된 생물학적 시료 0.5~12㎕를 용해 버퍼 140~160㎕에 넣고 0.5~2분 동안 볼텍싱한 후 20~40분 동안 실온에서 반응시켜 전처리하는 단계;pretreatment by placing 0.5-12 μl of a biological sample isolated from a patient suspected of being infected with carbapenem-resistant bacteria in 140-160 μl of lysis buffer, vortexing for 0.5-2 minutes, and reacting at room temperature for 20-40 minutes;

상기 용해 버퍼로 전처리된 시료를 9,000~11,000rpm 조건으로 4~6분간 원심분리하여 상층액을 수득하는 단계;centrifuging the sample pretreated with the lysis buffer at 9,000 to 11,000 rpm for 4 to 6 minutes to obtain a supernatant;

상기 수득한 상층액 25~35㎕를 반응 버퍼 90~110㎕ 및 형광 프로브 기질 11~14㎕와 혼합하여 반응시킨 후 형광값을 측정하는 단계;를 포함할 수 있고,and measuring the fluorescence value after mixing 25-35 μl of the obtained supernatant with 90-110 μl of reaction buffer and 11-14 μl of fluorescent probe substrate;

더욱 구체적으로는,More specifically,

카바페넴 내성균 감염 의심 환자로부터 분리된 생물학적 시료를 배지에 접종하여 시료 내 미생물을 증균하고 원심분리한 후 침전된 검체 1~10㎕를 용해 버퍼 150㎕에 넣고 1분 동안 볼텍싱한 후 30분 동안 실온에서 반응시켜 전처리하는 단계;A biological sample isolated from a patient suspected of being infected with carbapenem-resistant bacteria is inoculated into the medium, the microorganisms in the sample are enriched, and centrifuged. pretreatment by reacting at room temperature;

상기 용해 버퍼로 전처리된 시료를 10,000rpm 조건으로 5분간 원심분리하여 상층액을 수득하는 단계;centrifuging the sample pretreated with the lysis buffer at 10,000 rpm for 5 minutes to obtain a supernatant;

상기 수득한 상층액 30㎕를 반응 버퍼 100㎕ 및 형광 프로브 기질 13㎕와 혼합하여 반응시킨 후 여기 파장 260nm, 방출 파장 465nm로 형광값을 측정하는 단계;를 포함할 수 있으나, 이에 제한되지 않는다.30 μl of the obtained supernatant is mixed with 100 μl of a reaction buffer and 13 μl of a fluorescent probe substrate and reacted, followed by measuring the fluorescence value at an excitation wavelength of 260 nm and an emission wavelength of 465 nm; but is not limited thereto.

본 발명의 일 구현 예에 따른 방법에 있어서, 상기 용해 버퍼로 전처리된 시료를 원심분리하여 수득한 상층액에는 카바페넴 내성균 감염 의심 환자로부터 분리된 생물학적 시료에 포함되어 있던 카바페넴 분해효소가 포함되어 있다.In the method according to one embodiment of the present invention, the supernatant obtained by centrifuging the sample pretreated with the lysis buffer contains carbapenem-degrading enzyme contained in a biological sample isolated from a patient suspected of being infected with carbapenem-resistant bacteria. there is.

본 발명의 일 구현 예에 따른 방법에 있어서, 상기 형광값은 여기(excitation) 파장 250~270nm, 방출(emission) 파장 455~475nm로 측정하였고, 바람직하게는 여기 파장을 260nm로, 방출 파장을 465nm로, Gain 값을 50으로 설정한 후 형광값을 5분 간격으로 총 50분 동안 측정한 것일 수 있으나, 이에 제한되지 않는다. 본 발명의 방법에서 CRE에 대한 양성 또는 음성의 판정은, 50분에서 측정된 형광값과 0분에서 측정된 형광값의 차이가 컷 오프(cut-off) 값보다 클 경우 양성 반응, 작을 경우 음성 반응으로 판정할 수 있으며, 컷 오프 값은 3,188로 ROC(receiver-operating characteristic) 곡선을 통해 결정되었다.In the method according to an embodiment of the present invention, the fluorescence value was measured at an excitation wavelength of 250 to 270 nm and an emission wavelength of 455 to 475 nm, preferably, an excitation wavelength of 260 nm and an emission wavelength of 465 nm Therefore, after setting the gain value to 50, the fluorescence value may be measured at 5 minute intervals for a total of 50 minutes, but is not limited thereto. In the method of the present invention, the determination of positive or negative for CRE is positive when the difference between the fluorescence value measured at 50 minutes and the fluorescence value measured at 0 minutes is greater than the cut-off value, and negative when smaller. It can be judged by the reaction, and the cut-off value was 3,188, which was determined through a receiver-operating characteristic (ROC) curve.

이하, 본 발명의 실시예에 의해 상세히 설명한다. 단, 하기 실시예는 본 발명을 예시하는 것일 뿐, 본 발명의 내용이 하기 실시예에 한정되는 것은 아니다.Hereinafter, an embodiment of the present invention will be described in detail. However, the following examples only illustrate the present invention, and the content of the present invention is not limited to the following examples.

제조예 1. 카바페넴 분해효소 생성 장내세균(CPE) 검출용 키트Preparation Example 1. Kit for detecting carbapenem-degrading enzyme-producing Enterobacteriaceae (CPE)

본 발명의 카바페넴 분해효소 생성 장내세균 검출용 키트의 구성 요소는 표 1 및 도 1과 같으며, 카바페넴 분해효소 생성 장내세균 검출용 키트의 제작을 위해 용해 버퍼, 반응 버퍼 및 형광 프로브 기질을 제조하였다. The components of the kit for detecting carbapenem-degrading enterobacteriaceae of the present invention are shown in Table 1 and FIG. prepared.

우선, 용해 버퍼는 총 1L 부피 기준으로 2.5mM의 EDTA(SAMCHUN, Cat No. E0060) 4.8㎖, 프로테아제 억제제(1 tablet/10㎖; Roche, Cat No. 4693132001) 200㎖, 1X CHAPS(Sigma, Cat No. 19899) 10㎖, 50mg/㎖의 라이소자임(Sigma, Cat No. L-6876) 2㎖, 2,500U/㎖의 DNaseⅠ(Thermo, Cat No. 90083) 2㎖, 30mM의 PBS(Sigma, Cat No. P3813) 333㎖ 및 증류수 448.2㎖을 혼합한 후 필터링하여(pore size 0.22㎛) 제조하였다(표 2). First, the lysis buffer is 4.8 ml of 2.5 mM EDTA (SAMCHUN, Cat No. E0060) based on a total volume of 1 L, protease inhibitor (1 tablet/10 ml; Roche, Cat No. 4693132001) 200 ml, 1X CHAPS (Sigma, Cat) No. 19899) 10 ml, 50 mg/ml of lysozyme (Sigma, Cat No. L-6876) 2 ml, 2,500 U/ml of DNase I (Thermo, Cat No. 90083) 2 ml, 30 mM PBS (Sigma, Cat No. No. 90083) P3813) was prepared by mixing 333 ml of distilled water and 448.2 ml of distilled water and then filtering (pore size 0.22 μm) (Table 2).

또한, 반응 버퍼는 염화나트륨(sodium chloride, NaCl; DAEJUNG, Cat No. 7548-4100) 8g, 인산이나트륨(sodium phosphate dibasic, Na2HPO4; DAEJUNG, Cat No. 7613-4400) 0.24g, 염화칼륨(potassium chloride, KCl; YAKURI, Cat No. 28514) 0.2g 및 제일인산칼륨(potassium phosphate monobasic, KH2PO4; JUNSEI, Cat No. 84185A1250) 1.44g을 혼합하고 총 용량이 1L가 되도록 증류수를 첨가한 후 필터링하고(pore size 0.22㎛), 121℃에서 15분 동안 고압멸균하여 제조하였다(표 3). In addition, the reaction buffer is sodium chloride (NaCl; DAEJUNG, Cat No. 7548-4100) 8 g, disodium phosphate dibasic (Na 2 HPO 4 ; DAEJUNG, Cat No. 7613-4400) 0.24 g, potassium chloride ( Potassium chloride, KCl; YAKURI, Cat No. 28514) 0.2 g and potassium phosphate monobasic (KH 2 PO 4 ; JUNSEI, Cat No. 84185A1250) 1.44 g were mixed and distilled water was added so that the total volume was 1L. After filtering (pore size 0.22㎛), it was prepared by autoclaving at 121 ℃ for 15 minutes (Table 3).

또한, 형광 프로브 기질은 상기 화학식 1로 표시되는 (4S,5R,6S)-6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid 화합물을 한양대학교 민선준 교수로부터 제공받아 사용하였다(표 4).In addition, the fluorescent probe substrate is (4S,5R,6S)-6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2) -oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid was provided by Professor Seon-Jun Min of Hanyang University and used. (Table 4).

Figure 112019134976004-pat00002
Figure 112019134976004-pat00002

Figure 112019134976004-pat00003
Figure 112019134976004-pat00003

Figure 112019134976004-pat00004
Figure 112019134976004-pat00004

Figure 112019134976004-pat00005
Figure 112019134976004-pat00005

실시예 1. 본 발명의 키트를 사용한 카바페넴 분해효소 생성 장내세균 검출능 분석Example 1. Analysis of carbapenem-degrading enzyme-producing enterobacteriaceae using the kit of the present invention

1-1. 종래의 카바페넴 분해효소 생성 장내세균 검출용 키트 사용1-1. Using a conventional kit for detecting carbapenem-degrading enzyme-producing enterobacteria

기존에 카바페넴 분해효소를 생성하는 장내세균의 검출에 사용되어온 키트(bioMerieux, Inc., 프랑스)를 이용하여 하기 표 5의 CPE를 대상으로 실험을 수행하였으며, 키트의 지침서에 따라 실험을 수행하여 밝은 주황색(light orange)까지 양성 반응으로 판단한 결과(2019 CLSI GUIDE LINE(29th)참고), 하기 표 6에 나타난 바와 같이 민감도(sensitivity)는 67.7%이고, 특이도(specificity)는 100%임을 확인하였다. Experiments were performed on CPE in Table 5 below using a kit (bioMerieux, Inc., France) that has been previously used to detect enterobacteriaceae that produce carbapenem degrading enzymes. As a result of judging a positive reaction up to light orange (refer to 2019 CLSI GUIDE LINE (29 th )), as shown in Table 6 below, the sensitivity was 67.7%, and the specificity was 100%. did.

Figure 112019134976004-pat00006
Figure 112019134976004-pat00006

Figure 112019134976004-pat00007
Figure 112019134976004-pat00007

1-2. 본 발명의 카바페넴 분해효소 생성 장내세균 검출용 키트 사용1-2. Use of the kit for detecting carbapenem-degrading enzyme-producing enterobacteria of the present invention

본 발명의 키트를 사용하여 카바페넴 분해효소 생성 장내세균을 검출하였다. 구체적으로, 임상검체를 채취하여 BAP(Blood Agar Plate) 배지에서 배양하고 원심분리한 후 검체 채취용 도구인 면봉이나 루프를 사용하여 검체 약 1㎕를 채취하여 용해 버퍼 150㎕이 들어있는 튜브에 풀어준 후 1분간 볼텍싱하고 30분 동안 실온에서 반응시켰다. 반응이 끝나고 10,000rpm 조건으로 5분간 원심분리하여 잔여물을 침전시키고 카바페넴 분해효소가 존재하는 상층액을 수득하였다. 96웰 플레이트에 상기 수득한 상층액 30㎕, 반응 버퍼 100㎕ 및 형광 프로브 기질 13㎕를 넣고 형광 측정기(Infinite F200 Pro, Tecan coup Ltd.)를 이용하여 여기 파장 260nm, 방출 파장 465nm로 형광값을 측정하였다. 형광값이 컷 오프 값(cut-off) 3,188 보다 크면 양성 반응, 컷 오프 값 3,188 보다 작으면 음성 반응으로 판정하였고, 컷 오프 값(3,188)은 ROC(receiver-operating characteristic) 곡선을 분석하여 확인하였다(도 2).Carbapenem-degrading enzyme-producing enterobacteria were detected using the kit of the present invention. Specifically, a clinical sample is collected, cultured in BAP (Blood Agar Plate) medium, centrifuged, and approximately 1 μl of the sample is collected using a cotton swab or loop, which is a tool for sample collection, and dissolved in a tube containing 150 μl of lysis buffer. After vortexing for 1 minute, the reaction was carried out at room temperature for 30 minutes. After the reaction was completed, the residue was precipitated by centrifugation at 10,000 rpm for 5 minutes to obtain a supernatant containing carbapenem degrading enzyme. Put 30 μl of the obtained supernatant, 100 μl of reaction buffer, and 13 μl of fluorescent probe substrate in a 96-well plate, and measure the fluorescence value with an excitation wavelength of 260 nm and an emission wavelength of 465 nm using a fluorescence meter (Infinite F200 Pro, Tecan coup Ltd.). measured. If the fluorescence value was greater than the cut-off value (cut-off) 3,188, it was determined as a positive reaction, and if the cut-off value was less than 3,188, it was determined as a negative reaction, and the cut-off value (3,188) was confirmed by analyzing the ROC (receiver-operating characteristic) curve. (Fig. 2).

본 발명의 키트를 사용하여 카바페넴 분해효소 유전자를 가진 장내세균(CPE) 65종 및 카바페넴 분해효소 유전자를 갖지 않은 장내세균 156종에 대한 분석을 수행한 결과, 하기 표 7에 나타난 바와 같이 민감도(sensitivity)는 75.4%이고, 특이도(specificity)는 99.3%임을 확인하였다.As a result of analysis of 65 enterobacteriaceae (CPE) having a carbapenem degrading enzyme gene and 156 enterobacteriaceae not having a carbapenem degrading enzyme gene using the kit of the present invention, as shown in Table 7 below, the sensitivity It was confirmed that the sensitivity was 75.4% and the specificity was 99.3%.

Figure 112019134976004-pat00008
Figure 112019134976004-pat00008

1-3. 재현성 분석1-3. Reproducibility analysis

본 발명의 카바페넴 분해효소 생성 장내세균 검출용 키트의 재현성을 분석하기 위해, 카바페넴 분해효소 유전자를 가진 장내세균 10종과 카바페넴 분해효소 유전자를 갖지 않는 장내세균 10종을 대상으로 총 3배치 수행하였다. 상기 카바페넴 분해효소 유전자를 가진 장내세균 10개는 Class A 3개(KPC 2개, GES 1개), Class B 4개(IMP 1개, VIM 2개, NDM 1개), Class D 2개(OXA), 2개 이상의 카바페넴 분해효소 유전자를 갖는 장내세균 1개로 구성되어 있으며, 이 중 5개(IMP, VIM, KPC, NDM, OXA 각 1개씩)는 기존 검사에서 양성으로 판별되었던 균주이고, 나머지 5개(VIM, KPC, GES, OXA, 2개 이상의 카바페넴 분해효소 유전자를 가진 장내세균, 각 1개씩)는 음성으로 판별되었던 균주이다. 또한, 상기 카바페넴 분해효소 유전자를 갖지 않는 장내세균 10개는 카바페넴 내성 장내세균(CRE) 3개, 광범위 베타-락탐 생성 장내세균(ESBL) 4개, 모든 항생제에 감수성인 장내세균(Non-ESBL) 3개로 구성되어 있으며, 이 중 ESBL 1개는 기존 검사에서 음성으로 판별되었던 균주이다.In order to analyze the reproducibility of the kit for detecting carbapenem-degrading enterobacteriaceae of the present invention, a total of 10 enterobacteriaceae having a carbapenem-degrading enzyme gene and 10 enterobacteriaceae not having a carbapenem-degrading enzyme gene were treated in 3 batches. carried out. 10 enterobacteriaceae having the carbapenem degrading enzyme gene were Class A 3 (2 KPC, 1 GES), 4 Class B (1 IMP, 2 VIM, 1 NDM), 2 Class D ( OXA) and one enterobacteriaceae having two or more carbapenem-degrading enzyme genes, of which five (IMP, VIM, KPC, NDM, OXA, one each) are strains that were identified as positive in the previous test, The remaining five (VIM, KPC, GES, OXA, enterobacteriaceae having two or more carbapenem-degrading enzyme genes, one each) were strains that were identified as negative. In addition, 10 enterobacteriaceae that do not have the carbapenem degrading enzyme gene include 3 carbapenem-resistant enterobacteriaceae (CRE), 4 broad-spectrum beta-lactam-producing enterobacteriaceae (ESBL), and enterobacteriaceae sensitive to all antibiotics (Non- ESBL), of which one ESBL is a strain that was identified as negative in the previous test.

우선, 배치간 재현성을 분석한 결과 배치 1과 배치 2, 및 배치 2와 배치 3에서의 재현성은 모두 95%이고, 배치 1과 배치 3에서의 재현성은 100%이었다. 배치 1에서 양성으로 판별되었던 KPC 1개 균주가 배치 2에서는 음성으로 판별되어 95%의 배치간 재현성을 보였고, 배치 2에서 음성으로 판별되었던 KPC 1개 균주가 배치 3에서는 양성으로 판별되어 95%의 배치간 재현성을 보였다.First, as a result of analyzing the reproducibility between batches, the reproducibility of batches 1 and 2 and batches 2 and 3 was 95%, and the reproducibility of batches 1 and 3 was 100%. One KPC strain, which was identified as positive in batch 1, was identified as negative in batch 2, and showed 95% reproducibility between batches, and one KPC strain, which was identified as negative in batch 2, was identified as positive in batch 3, resulting in 95% of batch reproducibility. Batch-to-batch reproducibility was demonstrated.

또한, 배치내 재현성을 분석한 결과, 배치 1은 95%, 배치 2 및 배치 3은 100%의 재현성을 보였다. 배치 1의 경우 기존에 양성으로 판별되었던 ESBL 1개가 음성으로 판별되어 95%의 배치내 재현성을 보였다.In addition, as a result of analyzing the reproducibility within a batch, batch 1 showed a reproducibility of 95%, and batches 2 and 3 showed a reproducibility of 100%. In the case of batch 1, one ESBL, which had previously been identified as positive, was identified as negative, showing 95% intra-batch reproducibility.

게다가, 사용자간 재현성을 분석한 결과, 배치 1은 100%, 배치 2 및 배치 3은 모두 95%의 재현성을 보였다. 배치 2의 경우 사용자 A에서 음성으로 판별되었던 KPC 1개 균주가 사용자 B에서는 양성으로 판별되어 95%의 사용자간 재현성을 보였으며, 배치 3의 경우 사용자 A에서 양성으로 판별되었던 2개 이상의 카바페넴 분해효소 유전자를 가진 장내세균 1개가 사용자 B에서는 음성으로 판별되어 95%의 사용자간 재현성을 보였다.In addition, as a result of analyzing reproducibility between users, batch 1 showed 100% reproducibility, and batch 2 and batch 3 showed 95% reproducibility. In the case of batch 2, one KPC strain, which was identified as negative in user A, was determined as positive in user B, showing 95% reproducibility between users, and in batch 3, two or more carbapenems that were identified as positive in user A One enterobacteriaceae with the enzyme gene was identified as negative in user B, showing 95% reproducibility between users.

진단의 관점에서 민감도는 질병이 있는 사람을 얼마나 잘 찾아 내는가에 대한 값이고 특이도는 정상을 얼마나 잘 찾아 내는가에 대한 값으로, 검사의 신뢰도를 평가하는 중요한 항목이다.From a diagnosis point of view, sensitivity is a value for how well it detects a person with a disease, and specificity is a value for how well it detects a normal person, and is an important item to evaluate the reliability of a test.

종래 키트는 카바페넴 유전자를 가진 장내세균 검출에 대한 민감도와 특이도를 단순히 색 비교를 통해 확인한 것이라면, 본 발명의 키트는 ROS 곡선에 대한 데이터를 기반으로 카바페넴 내성 카바페넴 분해효소 유전자를 가진 장내세균의 검출에 대한 민감도 및 특이도를 보다 정확하게 확인할 수 있고 재현성도 우수하므로, 종래의 방법에 비해 항생제 내성 장내세균의 감염 여부에 대한 진단이 신속 정확하게 이루어질 수 있을 것으로 사료되었다.While the conventional kit confirms the sensitivity and specificity for detection of enterobacteriaceae with a carbapenem gene simply through color comparison, the kit of the present invention is based on the data on the ROS curve. Since the sensitivity and specificity for the detection of bacteria can be confirmed more accurately and the reproducibility is excellent, it was considered that the diagnosis of antibiotic-resistant enterobacteriaceae infection could be made quickly and accurately compared to the conventional method.

Claims (7)

용해 버퍼(lysis buffer), 반응 버퍼(reaction buffer) 및 형광 프로브(fluorescent probe) 기질을 포함하는 카바페넴 분해효소 생성 장내세균(carbapenemase-producing enterobacteriaceae)을 검출하기 위한 키트로서,
상기 형광 프로브 기질은 하기 화학식 1로 표시되는 (4S,5R,6S)-6-((R)-1-하이드록시에틸-4-메틸-7-옥소-3-((4-(((2-옥소-2H-크로멘-7-일)옥시)메틸)페녹시)메틸)-1-아자바이사이클로[3.2.0]헵트-2-엔-2-카복실산[(4S,5R,6S)-6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid] 화합물인 것을 특징으로 하는 카바페넴 분해효소 생성 장내세균을 검출하기 위한 키트.
[화학식 1]
Figure 112021120064707-pat00014
A kit for detecting carbapenemase-producing enterobacteriaceae comprising a lysis buffer, a reaction buffer and a fluorescent probe substrate, the kit comprising:
The fluorescent probe substrate is (4S,5R,6S)-6-((R)-1-hydroxyethyl-4-methyl-7-oxo-3-((4-(((2) -oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid [(4S,5R,6S)- 6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)- 1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid] A kit for detecting carbapenem-degrading enzyme-producing enterobacteria, characterized in that it is a compound.
[Formula 1]
Figure 112021120064707-pat00014
제1항에 있어서, 상기 용해 버퍼는 EDTA(Ethylenediaminetetraacetic acid), 프로테아제 억제제(Protease inhibitor), CHAPS(3-[(3-Cholamidopropyl)dimethylammonio]-1-propanesulfonate hydrate), 라이소자임(lysozyme), DNase(deoxyribonuclease) 및 PBS(phosphate buffered saline)로 이루어진 것을 특징으로 하는 카바페넴 분해효소 생성 장내세균을 검출하기 위한 키트.According to claim 1, wherein the lysis buffer is EDTA (Ethylenediaminetetraacetic acid), a protease inhibitor (Protease inhibitor), CHAPS (3-[(3-Cholamidopropyl) dimethylammonio] -1-propanesulfonate hydrate), lysozyme (lysozyme), DNase (deoxyribonuclease) ) and a kit for detecting carbapenem-degrading enzyme-producing enterobacteria, characterized in that it consists of phosphate buffered saline (PBS). 제1항에 있어서, 상기 반응 버퍼는 NaCl(sodium chloride), Na2HPO4(sodium phosphate dibasic), KCl(potassium chloride) 및 KH2PO4(potassium phosphate monobasic)로 이루어진 것을 특징으로 하는 카바페넴 분해효소 생성 장내세균을 검출하기 위한 키트.The decomposition of carbapenem according to claim 1, wherein the reaction buffer is sodium chloride (NaCl), sodium phosphate dibasic (Na 2 HPO 4 ), potassium chloride (KCl) and potassium phosphate monobasic (KH 2 PO 4 ). A kit for detecting enzyme-producing enterobacteriaceae. 삭제delete 제1항에 있어서, EDTA(Ethylenediaminetetraacetic acid), 프로테아제 억제제(Protease inhibitor), CHAPS(3-[(3-Cholamidopropyl)dimethylammonio]-1-propanesulfonate hydrate), 라이소자임(lysozyme), DNase(deoxyribonuclease) 및 PBS(phosphate buffered saline)로 이루어진 용해 버퍼; NaCl(sodium chloride), Na2HPO4(sodium phosphate dibasic), KCl(potassium chloride) 및 KH2PO4(potassium phosphate monobasic)로 이루어진 반응 버퍼; 및 하기 화학식 1로 표시되는 (4S,5R,6S)-6-((R)-1-하이드록시에틸-4-메틸-7-옥소-3-((4-(((2-옥소-2H-크로멘-7-일)옥시)메틸)페녹시)메틸)-1-아자바이사이클로[3.2.0]헵트-2-엔-2-카복실산[(4S,5R,6S)-6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid] 화합물을 형광 프로브 기질로 포함하는 카바페넴 분해효소 생성 장내세균을 검출하기 위한 키트.
[화학식 1]
Figure 112019134976004-pat00010
According to claim 1, EDTA (Ethylenediaminetetraacetic acid), protease inhibitor (Protease inhibitor), CHAPS (3-[(3-Cholamidopropyl) dimethylammonio] -1-propanesulfonate hydrate), lysozyme (lysozyme), DNase (deoxyribonuclease) and PBS ( lysis buffer consisting of phosphate buffered saline); NaCl (sodium chloride), Na 2 HPO 4 (sodium phosphate dibasic), KCl (potassium chloride) and KH 2 PO 4 (potassium phosphate monobasic) consisting of a reaction buffer; and (4S,5R,6S)-6-((R)-1-hydroxyethyl-4-methyl-7-oxo-3-((4-(((2-oxo-2H) -chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid [(4S,5R,6S)-6-(( R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[ 3.2.0] A kit for detecting carbapenem-degrading enzyme-producing Enterobacteriaceae containing the compound [hept-2-ene-2-carboxylic acid] as a fluorescent probe substrate.
[Formula 1]
Figure 112019134976004-pat00010
카바페넴 내성균 감염 의심 환자로부터 분리된 생물학적 시료를 용해 버퍼(lysis buffer)로 전처리하는 단계;
상기 용해 버퍼로 전처리된 시료를 원심분리하여 상층액을 수득하는 단계; 및
상기 수득한 상층액을 반응 버퍼(reaction buffer) 및 형광 프로브(fluorescent probe) 기질과 혼합하여 반응시킨 후 형광값을 측정하는 단계;를 포함하는 카바페넴 분해효소 생성 장내세균(carbapenemase-producing enterobacteriaceae)을 검출하는 방법으로서,
상기 형광 프로브 기질은 하기 화학식 1로 표시되는 (4S,5R,6S)-6-((R)-1-하이드록시에틸-4-메틸-7-옥소-3-((4-(((2-옥소-2H-크로멘-7-일)옥시)메틸)페녹시)메틸)-1-아자바이사이클로[3.2.0]헵트-2-엔-2-카복실산[(4S,5R,6S)-6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid] 화합물인 것을 특징으로 하는 카바페넴 분해효소 생성 장내세균(carbapenemase-producing enterobacteriaceae)을 검출하는 방법.
[화학식 1]
Figure 112021120064707-pat00015
pre-treating a biological sample isolated from a patient suspected of being infected with carbapenem-resistant bacteria with a lysis buffer;
centrifuging the sample pretreated with the lysis buffer to obtain a supernatant; and
Carbapenemase-producing enterobacteriaceae, comprising the step of measuring the fluorescence value after mixing the obtained supernatant with a reaction buffer and a fluorescent probe substrate A method of detecting, comprising:
The fluorescent probe substrate is (4S,5R,6S)-6-((R)-1-hydroxyethyl-4-methyl-7-oxo-3-((4-(((2) -oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid [(4S,5R,6S)- 6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)- A method for detecting carbapenemase-producing enterobacteriaceae, characterized in that the compound is 1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid.
[Formula 1]
Figure 112021120064707-pat00015
제6항에 있어서,
카바페넴 내성균 감염 의심 환자로부터 분리된 생물학적 시료를 EDTA(Ethylenediaminetetraacetic acid), 프로테아제 억제제(Protease inhibitor), CHAPS(3-[(3-Cholamidopropyl)dimethylammonio]-1-propanesulfonate hydrate), 라이소자임(lysozyme), DNase(deoxyribonuclease) 및 PBS(phosphate buffered saline)로 이루어진 용해 버퍼(lysis buffer)로 전처리하는 단계;
상기 용해 버퍼로 전처리된 시료를 원심분리하여 상층액을 수득하는 단계; 및
상기 수득한 상층액을 NaCl(sodium chloride), Na2HPO4(sodium phosphate dibasic), KCl(potassium chloride) 및 KH2PO4(potassium phosphate monobasic)로 이루어진 반응 버퍼(reaction buffer) 및 하기 화학식 1로 표시되는 (4S,5R,6S)-6-((R)-1-하이드록시에틸-4-메틸-7-옥소-3-((4-(((2-옥소-2H-크로멘-7-일)옥시)메틸)페녹시)메틸)-1-아자바이사이클로[3.2.0]헵트-2-엔-2-카복실산[(4S,5R,6S)-6-((R)-1-Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid] 화합물인 형광 프로브(fluorescent probe) 기질과 혼합하여 반응시킨 후, 여기(excitation) 파장 250~270 nm 및 방출(emission) 파장 455~475 nm로 형광값을 측정하는 단계;를 포함하는 카바페넴 분해효소 생성 장내세균(carbapenemase-producing enterobacteriaceae)을 검출하는 방법.
[화학식 1]
Figure 112019134976004-pat00011
7. The method of claim 6,
Ethylenediaminetetraacetic acid (EDTA), protease inhibitor, CHAPS (3-[(3-Cholamidopropyl)dimethylammonio]-1-propanesulfonate hydrate), lysozyme, DNase (deoxyribonuclease) and pretreatment with a lysis buffer (lysis buffer) consisting of PBS (phosphate buffered saline);
centrifuging the sample pretreated with the lysis buffer to obtain a supernatant; and
The obtained supernatant is NaCl (sodium chloride), Na 2 HPO 4 (sodium phosphate dibasic), KCl (potassium chloride) and KH 2 PO 4 (reaction buffer) consisting of (potassium phosphate monobasic) and a reaction buffer (1) Represented (4S,5R,6S)-6-((R)-1-hydroxyethyl-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromene-7) -yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid [(4S,5R,6S)-6-((R)-1- Hydroxyethyl)-4-methyl-7-oxo-3-((4-(((2-oxo-2H-chromen-7-yl)oxy)methyl)phenoxy)methyl)-1-azabicyclo[3.2.0]hept -2-ene-2-carboxylic acid] After mixing and reacting with a fluorescent probe substrate, the fluorescence value is measured at an excitation wavelength of 250 to 270 nm and an emission wavelength of 455 to 475 nm A method of detecting carbapenemase-producing enterobacteriaceae, comprising the step of:
[Formula 1]
Figure 112019134976004-pat00011
KR1020190176796A 2019-12-27 2019-12-27 Kit for detecting carbapenemase-producing enterobacteriaceae comprising fluorescent probe and method for detecting carbapenemase-producing enterobacteriaceae using the same KR102365852B1 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
KR1020190176796A KR102365852B1 (en) 2019-12-27 2019-12-27 Kit for detecting carbapenemase-producing enterobacteriaceae comprising fluorescent probe and method for detecting carbapenemase-producing enterobacteriaceae using the same

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
KR1020190176796A KR102365852B1 (en) 2019-12-27 2019-12-27 Kit for detecting carbapenemase-producing enterobacteriaceae comprising fluorescent probe and method for detecting carbapenemase-producing enterobacteriaceae using the same

Publications (2)

Publication Number Publication Date
KR20210083966A KR20210083966A (en) 2021-07-07
KR102365852B1 true KR102365852B1 (en) 2022-02-22

Family

ID=76862225

Family Applications (1)

Application Number Title Priority Date Filing Date
KR1020190176796A KR102365852B1 (en) 2019-12-27 2019-12-27 Kit for detecting carbapenemase-producing enterobacteriaceae comprising fluorescent probe and method for detecting carbapenemase-producing enterobacteriaceae using the same

Country Status (1)

Country Link
KR (1) KR102365852B1 (en)

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1999062907A1 (en) 1998-06-02 1999-12-09 Merck & Co., Inc. Fused phenoxymethyl carbapenem antibacterials
WO2016188998A1 (en) 2015-05-27 2016-12-01 Roche Diagnostics Gmbh Mechanisms of antimicrobial susceptibility
CN106279178A (en) 2016-07-18 2017-01-04 华东理工大学 The fluorescent probe of Carbapenem-resistant class antibiotic pathogenic bacteria and synthetic method and application
JP2017505612A (en) * 2014-01-17 2017-02-23 ザ ボード オブ トラスティーズ オブ ザ リーランド スタンフォード ジュニア ユニバーシティ Probe based on 6,7-transcephalosporin for detecting bacteria expressing metallo-β-lactamase

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1999062907A1 (en) 1998-06-02 1999-12-09 Merck & Co., Inc. Fused phenoxymethyl carbapenem antibacterials
JP2017505612A (en) * 2014-01-17 2017-02-23 ザ ボード オブ トラスティーズ オブ ザ リーランド スタンフォード ジュニア ユニバーシティ Probe based on 6,7-transcephalosporin for detecting bacteria expressing metallo-β-lactamase
WO2016188998A1 (en) 2015-05-27 2016-12-01 Roche Diagnostics Gmbh Mechanisms of antimicrobial susceptibility
CN106279178A (en) 2016-07-18 2017-01-04 华东理工大学 The fluorescent probe of Carbapenem-resistant class antibiotic pathogenic bacteria and synthetic method and application

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
Mao et al., Detection of Carbapenemase-Producing Organisms with a Carbapenem-Based Fluorogenic Probe. Angewandte Chemie International Edition. 2017, Vol. 56, pp. 4468-4472 1부.*
Song et al., Intramolecular substitution uncages fluorogenic probes for detection of metallo-carbapenemaseexpressing bacteria. Chemical science. 2017, Vol. 8, pp. 7669-7674

Also Published As

Publication number Publication date
KR20210083966A (en) 2021-07-07

Similar Documents

Publication Publication Date Title
Oviaño et al. Matrix-assisted laser desorption ionization–time of flight mass spectrometry for the rapid detection of antimicrobial resistance mechanisms and beyond
US20220243248A1 (en) Method for the rapid determination of susceptibility or resistance of bacteria to antibiotics
US9593381B2 (en) Method and kit for detecting carbapenemase genes
ES2652367T3 (en) Method of detection of microorganisms resistant to a therapeutic agent
Guardabassi et al. Diagnostic microbiology in veterinary dermatology: present and future
CA3016632A1 (en) Methods and systems for determining antibiotic susceptibility
CN105671148A (en) Kit for detecting carbapenem-resistant Enterobacteriaceae (CRE) and detection method
Smiljanic et al. Comparison of in-house and commercial real time-PCR based carbapenemase gene detection methods in Enterobacteriaceae and non-fermenting gram-negative bacterial isolates
Phan et al. Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131
Yaghi et al. Unusually high prevalence of cosecretion of Ambler Class A and B carbapenemases and nonenzymatic mechanisms in multidrug-resistant clinical isolates of Pseudomonas aeruginosa in Lebanon
Viñuelas-Bayón et al. Rapid diagnosis of tuberculosis. Detection of drug resistance mechanisms
Fuster et al. Molecular epidemiology and drug-resistance mechanisms in carbapenem-resistant Klebsiella pneumoniae isolated in patients from a tertiary hospital in Valencia, Spain
Kawamoto et al. Performance evaluation of the MALDI Biotyper selective testing of antibiotic resistance–β-lactamase (MBT STAR-BL) assay for the detection of IMP metallo-β-lactamase activity in Enterobacteriaceae
US11385229B2 (en) Amplification technology using dual enzyme cascade detection
Gholami et al. The diversity of class B and class D carbapenemases in clinical Acinetobacter baumannii isolates
Li et al. Detection of AmpC β-lactamase-producing Gram-negative bacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
KR102365852B1 (en) Kit for detecting carbapenemase-producing enterobacteriaceae comprising fluorescent probe and method for detecting carbapenemase-producing enterobacteriaceae using the same
US20140228248A1 (en) Methods and compositions for detecting infections
CN116479150A (en) Single tube one-step method for rapidly detecting methicillin-resistant staphylococcus aureus by RPA-Cas12a/Cas13a
Zalas-Więcek et al. Rapid detection of genes encoding extended-spectrum beta-lactamase and carbapenemase in clinical Escherichia coli isolates with eazyplex SuperBug CRE system
Złoch et al. Problems with identifying and distinguishing salivary streptococci: A multi-instrumental approach
US20210318332A1 (en) Direct detection of the active form of beta-lactam-hydrolysing enzymes by using mass spectrophotometry
Morcillo et al. Fitness of drug resistant Mycobacterium tuberculosis and the impact on the transmission among household contacts
Tenover et al. Does the presence of multiple β-lactamases in Gram-negative bacilli impact the results of antimicrobial susceptibility tests and extended-spectrum β-lactamase and carbapenemase confirmation methods?
Walter de Walthoffen Penicillinase plasmid Australia type in Neisseria gonorrhoeae isolated in Poland

Legal Events

Date Code Title Description
E902 Notification of reason for refusal
E701 Decision to grant or registration of patent right
GRNT Written decision to grant