KR102155967B1 - Genetic Marker Composition for Discrimination of Lebbeus Groenlandicus Species Originated Mitochondria Insertion Markers and Diagnosing Method using the Same - Google Patents

Genetic Marker Composition for Discrimination of Lebbeus Groenlandicus Species Originated Mitochondria Insertion Markers and Diagnosing Method using the Same Download PDF

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KR102155967B1
KR102155967B1 KR1020190117659A KR20190117659A KR102155967B1 KR 102155967 B1 KR102155967 B1 KR 102155967B1 KR 1020190117659 A KR1020190117659 A KR 1020190117659A KR 20190117659 A KR20190117659 A KR 20190117659A KR 102155967 B1 KR102155967 B1 KR 102155967B1
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김정은
조성웅
최재필
박종화
염승식
조예진
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Abstract

The present invention relates to a genetic marker composition for discriminating species of Lebbeus groenlandicus derived from a mitochondrial insertion marker, a primer set for discriminating species of Lebbeus groenlandicus, a kit composition including the same, and a method for discriminating Lebbeus groenlandicus using the same. When using the genetic marker for discriminating the species of Lebbeus groenlandicus and the primer for amplifying the marker of the present invention, the Lebbeus groenlandicus of the present invention can be easily distinguished from other Dokdo shrimps caught in the waters around Dokdo, such as Pandalopsis japonica and Pandalus hypsinotus. In addition, it is possible to classify shrimp species in a faster, more accurate, and economical way.

Description

미토콘드리아 삽입 마커에서 유래한 가시배새우 종 판별용 유전자 마커 조성물 및 이를 이용한 가시배새우 판별방법{Genetic Marker Composition for Discrimination of Lebbeus Groenlandicus Species Originated Mitochondria Insertion Markers and Diagnosing Method using the Same}Genetic Marker Composition for Discrimination of Lebbeus Groenlandicus Species Originated Mitochondria Insertion Markers and Diagnosing Method using the Same}

본 발명은 미토콘드리아 삽입 마커에서 유래한 가시배새우 종 판별용 유전자 마커 조성물 및 이를 이용한 가시배새우 판별방법에 관한 것이다.The present invention relates to a genetic marker composition for discriminating species of prickly pear shrimp derived from a mitochondrial insertion marker and a method for discriminating prickly pear shrimp using the same.

새우는 절지동물문(Arthropoda), 연갑강(Malacostraca), 십각목(Decapoda)에 속하는 종으로 전 세계적으로 2,900여 종이 분포하며, 대한민국 연안에 90여 종이 서식하는 것으로 알려져 있다. 새우류는 형태학적으로 ‘pawn’으로 정의되는 수상새아목(Dendrobranchiata)과 ‘shrimp’로 정의되는 범배아목(Pleocyemata)으로 구분된다. Shrimp is a species belonging to Arthropoda, Malacostraca, and Decapoda. About 2,900 species are distributed worldwide, and about 90 species are known to inhabit the coast of Korea. Shrimp species are morphologically classified into the order of Dendrobranchiata, which is defined as'pawn,' and the order of Pleocyemata, which is defined as'shrimp'.

새우는 신장과 혈액 순환을 좋게 하고, 기력을 보충해주는 등의 효과가 본초강목 등의 고서에도 기록될 정도로 자연 강장식품로 잘 알려져 있으며, 앞으로도 건강식품으로 더욱 활용가치가 클 예정이다.Shrimp is well known as a natural tonic food so that it improves the kidneys and blood circulation, and replenishes energy, and the effects of replenishing energy are recorded in ancient books such as Bonchogangmok, and it is expected to be more valuable as a health food.

한편, 2010년 공표된 나고야의정서는 생물자원을 활용하여 생기는 이익을 공유하기 위한 국제협약으로, 동 협약은 2017년 8월 17일부터 우리나라에서도 발효 중이다. 우리나라는 국립생물자원관과 2012년 설립되는 국립생태원을 중심으로, 10만여 종의 국내 생물 유전자원을 발굴하고 자원 이용을 위한 데이터베이스를 만들어 나고야의정서에 대비하고 있다.Meanwhile, the Nagoya Protocol, announced in 2010, is an international agreement to share the benefits of utilizing biological resources, and the agreement is in effect in Korea from August 17, 2017. Korea is preparing for the Nagoya Protocol by discovering more than 100,000 species of domestic biological genetic resources and creating a database for resource use, centering on the National Institute of Biological Resources and the National Institute of Ecology established in 2012.

‘나고야의정서’가 발효되면서 우리 생물주권을 지키고 보전하는 것이 매우 중요한 문제로 떠오르고 있다. 우리 생물자원 보존과 관련하여 지리산과 한라산의 대표 식물인 구상나무는 1904년 서양으로 반출되어 크리스마스 트리로 외국에서 널리 사용된 바 있고, 1947년 미국으로 반출되어 ‘미스킴라일락’으로 불리며 정원수로 높은 인기를 누리고 있는 정향나무나, 소로나로 알려진 우리나라 토종 밀인 앉은뱅이밀은 모두 해외로 반출된 우리나라 생물자원이다.As the “Nagoya Protocol” comes into force, protecting and preserving our bio sovereignty is emerging as a very important issue. Regarding the preservation of our biological resources, the globular tree, the representative plant of Mt. Jirisan and Mt. Halla, was exported to the West in 1904 and used widely as a Christmas tree in foreign countries. The popular clove tree and the Korean native wheat known as Sorona are all biological resources of Korea exported overseas.

따라서, 우리나라 고유생물의 무단 반출을 막고, 생물자원을 확보하기 위한 다양한 노력이 필요하다. 특히, 나고야의정서에 대비하고, 경제적 부가가치가 높은 새우와 같은 고유종의 경우에는 생물 주권보장을 위한 종 특이 마커의 개발이 필수적인 상황이다. Therefore, various efforts are required to prevent the unauthorized export of Korean endemic organisms and secure biological resources. In particular, in the case of endemic species such as shrimp, which prepare for the Nagoya Protocol and have high economic value added, the development of species-specific markers for securing biological sovereignty is essential.

한편, 독도새우의 한 종류로 잘 알려진 가시배새우(Lebbeus groenlandicus)는 독도 인근해에서 서식하는 우리나라 대표 고유종으로, 닭새우로도 불린다. 가시배새우는 우리나라 양식 새우의 99.9%를 차지하는 흰다리새우(Litopenaeus vannamei)와는 진화적으로 거리가 먼 종이다. 특히, 가시배새우는 독도 영토주권 수호와 연결될 수 있는 중요한 고리를 제공하는 의미가 있으므로, 가시배새우의 유전체 분석과 종 동정을 통해 독도 영토주권 수호와 독도 생물다양성 확보에 이바지할 수 있다. On the other hand, Lebbeus shrimp, well known as a kind of Dokdo shrimp groenlandicus ) is Korea's representative endemic species living in the sea near Dokdo, and is also called chicken shrimp. Prickly pear shrimp ( Litopenaeus) accounts for 99.9% of farmed shrimp in Korea. vannamei ) is an evolutionarily distant species. Particularly, since prickly pear shrimp has the meaning of providing an important link to the protection of Dokdo territorial sovereignty, it can contribute to the protection of Dokdo territorial sovereignty and securing Dokdo biodiversity through genome analysis and species identification of Prickly Pear shrimp.

또한, 형태학적 특징에 따른 종 동정 및 분류는 생장 단계나 환경요인에 따라 변수가 발생하기 쉬워, 형태학적 특징에 따른 구분을 통한 종 동정 작업은 많은 시간과 노력, 비용이 요구되며, 많은 경험과 전문성을 가진 연구자들에 의해서만 제한적으로 가능하다. 그러나, 최근 생명공학 기술의 발달로 인해 DNA 수준에서 생물 종의 다양성 연구가 가능해지면서, 핵산지문 분석법을 통한 신속 정확한 종 동정이 가능해졌다. In addition, species identification and classification according to morphological characteristics tends to cause variables according to growth stages or environmental factors, and species identification through classification according to morphological characteristics requires a lot of time, effort, and cost. It is only limited by researchers with expertise. However, due to the recent development of biotechnology, it has become possible to study the diversity of biological species at the DNA level, enabling rapid and accurate species identification through nucleic acid fingerprint analysis.

현재, 십각목에 속하는 100여 종 이상의 새우 미토콘드리아 유전체 서열이 밝혀져 있으나, 독도새우의 일종인 가시배새우가 속한 꼬마새우과(Hippolytidae) 새우에 대한 미토콘드리아 서열 분석은 전무하다. 이에 따라, 가시배새우, 물렁가시붉은새우, 도화새우 등 독도 주변 해역에서 잡히는 독도새우들의 종을 분류하고, 이들을 구분할 수 있는 종 특이 마커의 개발은 전무한 상황이다. Currently, more than 100 species of shrimp mitochondrial genome sequences belonging to the Decahedron have been identified, but there is no mitochondrial sequence analysis of the Hippolytidae shrimp belonging to the Dokdo shrimp. Accordingly, there is no situation in the development of species-specific markers for classifying Dokdo shrimps caught in the waters around Dokdo, such as spiny pear shrimp, red lobster shrimp, and flaming shrimp.

이에, 본 발명자들은 독도새우의 하나인 가시배새우를 다른 새우들과 구분할 수 있는 종 특이 마커를 개발하기 위해 예의 연구노력한 결과, 가시배새우의 근육 조직에서 분리된 미토콘드리아 유전체 서열 중 NAD3(NADH dehydrogenase subunit 3) 유전자의 하부에 해당하는 4480번째 염기서열에서 다른 62종의 새우 종들과는 달리 39bp 길이의 삽입(insertion) 부위가 있는 것을 확인하였고, 동 삽입 서열을 기반으로 제작한 프라이머들을 이용하여 가시배새우를 다른 새우 종들과 손쉽게 구분할 수 있음을 밝힘으로써, 본 발명을 완성하였다.Accordingly, the present inventors have made extensive research efforts to develop a species-specific marker that can distinguish one of the Dokdo shrimps from other shrimps. As a result, NAD3 (NADH dehydrogenase) in the mitochondrial genome sequence isolated from the muscle tissue of the Shrimp subunit 3) In the 4480th nucleotide sequence under the gene, it was confirmed that there is an insertion site of 39 bp in length unlike other shrimp species, and using primers prepared based on the insertion sequence By revealing that the shrimp can be easily distinguished from other shrimp species, the present invention was completed.

1. 한국 등록특허공보 제10-1856539호 “긴꼬리도약옆새우 서식지 판별용 미세위성 마커 및 그를 이용한 서식지 판별 방법” (공고일자: 2018년 05월 10일)1. Korean Registered Patent Publication No. 10-1856539 “Microsatellite marker for determining the habitat of long-tailed leap side shrimp and a method for determining habitat using the same” (Announcement date: May 10, 2018) 2. 한국 등록특허공보 제10-1913744호 “긴꼬리도약옆새우 서식지 판별용 단일염기다형성(SNP) 유전자마커 및 그를 이용한 서식지 판별방법” (공고일자: 2018년 11월 01일)2. Korean Registered Patent Publication No. 10-1913744 “Single nucleotide polymorphism (SNP) gene marker for determining the habitat of long-tailed leap side shrimp and its habitat identification method” (announcement date: November 1, 2018)

따라서, 본 발명의 주된 목적은 가시배새우 종 판별용 미토콘드리아 마커 조성물 및 이에 기반한 프라이머 세트를 제공하는 데 있다.Accordingly, the main object of the present invention is to provide a mitochondrial marker composition for discriminating species of prickly pear shrimp and a primer set based thereon.

본 발명의 다른 목적은 상기 가시배새우 종 판별용 미토콘드리아 마커 및 이에 기반한 프라이머 세트를 이용하여 가시배새우를 판별하는 방법을 제공하기 위한 것이다.Another object of the present invention is to provide a method for discriminating a mitochondrial marker for discriminating the species of barbed shrimp and a primer set based thereon.

본 발명의 또 다른 목적은 가시배새우 종 판별용 미토콘드리아 마커 및 이에 기반한 프라이머 세트를 포함하는 가시배새우를 판별하기 위한 키트를 제공하기 위한 것이다.Another object of the present invention is to provide a kit for discriminating a mitochondrial marker and a primer set based on the mitochondrial marker for discriminating the species of barbed shrimp.

본 발명의 다른 목적 및 이점은 하기의 발명의 상세한 설명, 청구범위 및 도면에 의해 보다 명확하게 된다.Other objects and advantages of the present invention will become more apparent by the following detailed description, claims and drawings.

본 발명의 한 양태에 따르면, 본 발명은 서열번호 2의 DNA 서열로 구성된 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커 조성물을 제공한다.According to one aspect of the present invention, the present invention provides a genetic marker composition for discriminating species of thorny shrimp ( Lebbeus Groenlandicus ) consisting of the DNA sequence of SEQ ID NO: 2.

본 발명자들은 가시배새우의 종 특이적인 마커를 발굴하기 위하여 가시배새우의 게놈 분석을 수행하였다. 그 결과, 가시배새우의 미토콘드리아 유전체 서열에 주목하였다. 새우류의 미토콘드리아 유전체는 평균 15.9Kb(범위: 15,240bp 내지 16,899bp)로 종마다 다양한 반면, 대부분 13개의 단백질 코딩 유전자(ND1, ND2, ND3, ND4, ND4L , ND5, ND6, COI , COII , COIII , ATP6 , ATP8 , CytB)와, 22개의 tRNA 유전자, 그리고 2개의 rRNA 유전자를 가지고 있는 것으로 알려져 있다. 본 발명자들은 가시배새우의 미토콘드리아 유전체 서열을 결정 및 분석하였고, 분석된 가시배새우 미토콘드리아 유전자를 예측한 후, 다른 62종의 새우류 미토콘드리아의 유전자 서열과 가시배새우의 미토콘드리아 유전자 순서를 비교하여 유전자 순서가 보존적인 영역을 발굴하였다. 이후, 새우류의 계통도 및 진화트리(phylogenetic tree) 분석을 통하여 가시배새우와 진화적으로 가장 가까운 새우를 발굴하였고, 유전적으로 보존된 새우류 간의 미토콘드리아 유전체 서열을 정렬(alignment) 방식을 통해 분석하여 최종적으로 서열번호 2의 48bp 길이의 DNA 서열(5'-a gagtaagcaa ctaaaatttc ctgctcaata ataacgacac tgttaga-3')로 구성된 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커를 발굴하였다. The present inventors performed genomic analysis of spiny shrimp to discover species-specific markers of spiny shrimp. As a result, attention was paid to the mitochondrial genome sequence of prickly pear shrimp. The mitochondrial genome of shrimp species varies from species to species with an average of 15.9Kb (range: 15,240bp to 16,899bp), while most of 13 protein-coding genes ( ND1, ND2, ND3, ND4, ND4L , ND5, ND6, COI , COII , COIII , ATP6 , ATP8 , CytB ), 22 tRNA genes, and 2 rRNA genes. The present inventors determined and analyzed the mitochondrial genome sequence of prickly pear shrimp, predicted the analyzed prickly pear mitochondrial gene, and then compared the gene sequence of 62 other shrimp mitochondria with the mitochondrial gene sequence of prickly pear Has discovered a conservative area. Afterwards, through the analysis of the phylogenetic tree and the phylogenetic tree of prawns, the closest prawns were found evolutionarily, and the mitochondrial genome sequence between the genetically preserved prawns was analyzed through an alignment method. of SEQ ID NO: 2 48bp length of the DNA sequence (5'-a gagtaagcaa ctaaaatttc ctgctcaata ataacgacac tgttaga-3 ') consisting of the visible fold shrimp (Lebbeus Groenlandicus ) gene markers for species discrimination were discovered.

본 발명의 상기 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커는 가시배새우(Lebbeus Groenlandicus)의 미토콘드리아 유전체에 상호 보완적으로 결합 가능하므로, 그 자체로 가시배새우(Lebbeus Groenlandicus) 종 판별을 위한 마커, 또는 마커 조성물로 사용될 수 있다. The spiny pear shrimp of the present invention ( Lebbeus Groenlandicus ) The genetic marker for species discrimination is capable of complementary binding to the mitochondrial genome of Lebbeus Groenlandicus , so it can be used as a marker for discriminating species of Lebbeus Groenlandicus or a marker composition by itself. .

본 발명의 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커에서, 상기 서열번호 2의 DNA 서열은 서열번호 1의 가시배새우(Lebbeus Groenlandicus) 미토콘드리아 전장 유전체 서열 중 NAD3(NADH dehydrogenase subunit 3) 유전자의 4,480번째 염기 아래에 삽입된 것을 특징으로 한다. 상기 서열번호 2의 DNA 서열을 유전적으로 가까운 새우 종인 두마디 새우(Chlorotocus crassicornis) 미토콘드리아 서열과 비교하면, 가시배새우는 NADH dehydrogenase subunit 3(NAD3) 유전자의 하부에 해당하는 4,480번째 염기서열에서 두마디 새우(Chlorotocus crassicornis) 미토콘드리아 서열 대비 39 base-pairs(bp)의 삽입(insertion)이 있는 것으로 나타났다. Prickly pear shrimp of the present invention ( Lebbeus Groenlandicus ) In the gene marker for species discrimination, the DNA sequence of SEQ ID NO: 2 is SEQ ID NO: 1 Prickly pear ( Lebbeus Groenlandicus ) It is characterized by being inserted under the 4,480th base of the NAD3 (NADH dehydrogenase subunit 3) gene of the mitochondrial full-length genome sequence. When comparing the DNA sequence of SEQ ID NO: 2 with the mitochondrial sequence of Chlorotocus crassicornis, which is a genetically close shrimp species, prickly pear shrimp is two nodes at the 4,480th nucleotide sequence corresponding to the lower part of the NADH dehydrogenase subunit 3 (NAD3) gene. It was found that there was an insertion of 39 base-pairs (bp) compared to the mitochondrial sequence of shrimp (Chlorotocus crassicornis).

또한, 다른 62종의 새우들과 비교하였을 때, 4,480번째 염기에서 4,487번째 염기까지 8bp의 1차 삽입부(5'-a gagtaag-3'); 4,488번째 염기에서 4,494번째 염기까지 7bp의 보존부(5'-caa ctaa-3'); 및 4,495번째 염기에서 4,527번째 염기까지 33bp의 2차 삽입부(5'- aatttc ctgctcaata ataacgacac tgttaga -3');를 포함하여 구성되어 있다. 이러한 삽입부의 구성은 본 발명의 하기 [도 4]에 잘 정리되어 있으며, 상기 특징으로 인하여 서열번호 2의 DNA 서열로 구성된 본 발명의 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커는 삽입 마커의 일종으로 사용될 수 있다. 상기 "삽입 마커" 또는 "Insertion 마커"는 DNA의 염기서열에서 일부 염기가 중간에 삽입된(insertion) 변이를 총칭한다. 상기 삽입 마커는 종들 사이의 유전체 정보를 비교 분석하는 방법을 통해 삽입(insertion) 또는 결실(deletion)된 영역을 탐색하고 그 정보를 바탕으로 상기 "삽입 마커" 부위를 증폭하는데 사용되는 프라이머를 제작하는데 사용될 수 있다. In addition, when compared to the other 62 species of shrimp, from the 4,480th base to the 4,487th base 8bp primary insertion (5'-a gagtaag-3'); A conserved portion of 7 bp from base 4,488 to base 4,494 (5'-caa ctaa-3'); And a secondary insertion portion of 33 bp from base 4,495 to base 4,527 (5'-atttc ctgctcaata ataacgacac tgttaga -3'). Configuring this insertion portion is arranged well to the invention [4], prickly pear shrimp of the present invention due to the characteristics consisting of the DNA sequence of SEQ ID NO: 2 (Lebbeus Groenlandicus ) Species identification genetic markers can be used as a kind of insertion marker. The "insertion marker" or "Insertion marker" refers to a mutation in which some bases are inserted in the middle of the DNA sequence. The insertion marker searches for an insertion or deletion region through a method of comparing and analyzing genomic information between species, and based on the information, a primer used to amplify the "insertion marker" site is prepared. Can be used.

본 발명에서 "마커"란 새우류 사이의 종 특이성을 분석할 수 있는 물질로, 가시배새우(Lebbeus Groenlandicus) 종 판별과 관련된 핵산(예: DNA, mRNA 등), 등과 같은 유기 생체 분자 등을 포함한다.In the present invention, "marker" refers to a substance capable of analyzing species specificity between shrimps, and includes organic biomolecules such as nucleic acids (eg, DNA, mRNA, etc.) related to species identification of Lebbeus Groenlandicus . .

본 발명의 다른 양태에 따르면, 본 발명은 서열번호 2의 DNA 서열 또는 그 단편을 특징적으로 증폭할 수 있는 프라이머 세트를 포함하는 가시배새우(Lebbeus Groenlandicus) 종 판별용 프라이머 세트를 제공한다. According to another aspect of the present invention, the present invention comprises a primer set capable of characteristically amplifying the DNA sequence of SEQ ID NO: 2 or a fragment thereof. Groenlandicus ) provides a primer set for species identification.

본 발명에서 용어, "프라이머(primer)"는 짧은 자유 3' 말단 수산화기(free 3' hydroxyl group)를 가지는 핵산 서열로 상보적인 주형(template)와 염기쌍(base pair)을 형성할 수 있고 주형의 복사를 위한 시작 지점으로 기능을 하는 짧은 핵산 서열을 의미한다. 상기 프라이머의 길이 및 서열은 연장 산물의 합성을 시작하도록 허용해야 하며, 프라이머의 구체적인 길이 및 서열은 요구되는 DNA 또는 RNA 표적의 복합도(complexity)뿐만 아니라, 온도 및 이온 강도와 같은 이용 조건에 의존할 것이다. 구체적 예로, 프라이머의 구체적인 길이 및 서열은 구아닌 및 시토신의 함량(GC contents), GC배열, 어닐링(annealing) 온도 및 이온 강도 등 여러 조건을 고려하여 결정해야 한다. 프라이머는 적절한 완충용액 및 온도에서 중합반응(즉, DNA 중합효소 또는 역전사효소)을 위한 시약 및 상이한 4가지 뉴클레오사이드 트리포스페이트(dNTPs)의 존재 하에서 DNA 합성을 개시할 수 있다.In the present invention, the term "primer" is a nucleic acid sequence having a short free 3'terminal hydroxyl group, which can form a complementary template and a base pair, and copy the template It refers to a short nucleic acid sequence that functions as a starting point for. The length and sequence of the primers should allow the synthesis of the extension product to start, and the specific length and sequence of the primers depend on the conditions of use such as temperature and ionic strength, as well as the complexity of the required DNA or RNA target. something to do. As a specific example, the specific length and sequence of the primer should be determined in consideration of various conditions such as guanine and cytosine contents (GC contents), GC arrangement, annealing temperature and ionic strength. Primers can initiate DNA synthesis in the presence of reagents for polymerization (ie, DNA polymerase or reverse transcriptase) and four different nucleoside triphosphates (dNTPs) at appropriate buffers and temperatures.

본 발명에서 "정방향(forward) 프라이머" 및 "역방향(reverse) 프라이머"는 유전자 증폭반응에 의해 증폭되는 유전자의 특정 부위의 3'-말단 및 5'-말단에 각각 결합하여 DNA 합성의 개시점으로 작용하는 프라이머를 의미한다.In the present invention, "forward primer" and "reverse primer" are each bound to the 3'-end and 5'-end of a specific site of a gene amplified by a gene amplification reaction to serve as the starting point of DNA synthesis. It means a primer that works.

본 발명의 가시배새우(Lebbeus Groenlandicus) 종 판별용 프라이머 세트에서, 상기 프라이머 세트는, 표적 서열의 증폭을 위하여 사용될 수 있으며, 바람직하게는 가시배새우 종 판별을 위한 삽입 마커인 서열번호 2의 DNA 서열의 증폭을 위하여 사용될 수 있다.Prickly pear shrimp of the present invention ( Lebbeus Groenlandicus ) In the primer set for species identification, the primer set may be used for amplification of the target sequence, and preferably may be used for amplification of the DNA sequence of SEQ ID NO: 2, which is an insertion marker for discriminating the species of P. .

본 발명의 가시배새우(Lebbeus Groenlandicus) 종 판별용 프라이머 세트에서, 상기 프라이머 세트는 서열번호 3 및 4의 프라이머 세트일 수 있다. Prickly pear shrimp of the present invention ( Lebbeus Groenlandicus ) In the species identification primer set, the primer set may be a primer set of SEQ ID NOs: 3 and 4.

본 발명의 구체적인 실시예에서, 본 발명자들은 미토콘드리아 유전체의 삽입(insertion) 부위의 유전자 서열에 기반한 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커를 이용하여 가시배새우(Lebbeus Groenlandicus)를 용이하게 판별할 수 있으며, 밴드 형성 유무의 확인을 통해 다른 새우 종들과 가시배새우(Lebbeus Groenlandicus)를 용이하게 구분이 가능함을 확인할 수 있었으며, 상기 서열번호 3 및 4의 프라이머 세트를 이용하여 증폭하는 경우, 가시배새우(Lebbeus Groenlandicus)에서만 서열번호 5의 244bp 길이의 특이적인 밴드가 증폭되는 것을 확인할 수 있었다. 따라서, 본 발명의 프라이머 세트를 가시배새우(Lebbeus Groenlandicus) 종 판별용 삽입 마커 프라이머 세트로 이용할 수 있다.In a specific embodiment of the present invention, the inventors of the present invention are based on the gene sequence of the insertion site of the mitochondrial genome, Lebbeus Groenlandicus ) It is possible to easily identify Lebbeus Groenlandicus by using a genetic marker for species identification, and by confirming the presence or absence of band formation, other shrimp species and Lebbeus Groenlandicus ) could be confirmed to be easily distinguishable, and when amplification using the primer sets of SEQ ID NOs: 3 and 4, thorny lobster ( Lebbeus Groenlandicus ) it was confirmed that a specific band of 244bp length of SEQ ID NO: 5 was amplified. Accordingly, the primer set of the present invention can be used as an insertion marker primer set for discriminating species of Lebbeus Groenlandicus .

본 발명의 다른 양태에 따르면, 본 발명은 상기 가시배새우(Lebbeus Groenlandicus) 종 판별용 프라이머 세트를 포함하는 가시배새우(Lebbeus Groenlandicus) 종 판별용 키트를 제공한다. According to another aspect of the present invention, the present invention is the spiny pear shrimp ( Lebbeus Groenlandicus ) Provides a kit for identifying species of spiny shrimp ( Lebbeus Groenlandicus ) including a primer set for species identification.

본 발명의 "키트"는 분석하고자 하는 시료로부터 유래된 게놈 DNA, 본 발명의 상기 프라이머 세트, 적당량의 DNA 중합 효소(예를 들면, Thermus aquaticus(Taq), Thermus thermophilus(Tth), Thermusfiliformis, Thermisflavus, Thermococcus literalis 또는 Pyrococcus furiosus(Pfu)로부터 수득한 열 안정성 DNA 중합효소), dNTP 혼합물, PCR 완충용액 및 물을 포함할 수 있다. 상기 PCR 완충용액은 KCl, Tris-HCl 및 MgCl2를 함유할 수 있다. 이외에 PCR 산물의 증폭 여부를 확인할 수 있는 전기영동 수행에 필요한 구성 성분들이 본 발명의 키트에 추가로 포함될 수 있다. 이 때 MgCl2 농도는 증폭의 특이성과 수량에 크게 영향을 준다. 일반적으로 Mg2 + 이온이 과량인 경우는 비특이적인 PCR 증폭 산물이 증가하고, Mg2 + 이온이 부족한 경우 PCR 산물의 산출률이 감소한다. 상기 PCR 완충용액에는 적당량의 BSA이 추가로 포함될 수도 있다.The "kit" of the present invention includes genomic DNA derived from a sample to be analyzed, the primer set of the present invention, an appropriate amount of DNA polymerase (eg, Thermus aquaticus (Taq), Thermus thermophilus (Tth), Thermusfiliformis, Thermisflavus, Thermostable DNA polymerase obtained from Thermococcus literalis or Pyrococcus furiosus (Pfu)), dNTP mixture, PCR buffer, and water. The PCR buffer solution may contain KCl, Tris-HCl and MgCl 2 . In addition, constituents necessary for performing electrophoresis capable of confirming the amplification of PCR products may be additionally included in the kit of the present invention. At this time, the concentration of MgCl 2 greatly affects the specificity and quantity of amplification. In general, when Mg 2 + ions are excessive, non-specific PCR amplification products increase, and when Mg 2 + ions are insufficient, the yield of PCR products decreases. An appropriate amount of BSA may be additionally included in the PCR buffer solution.

본 발명의 또 다른 양태에 따르면, 본 발명은 (a) 대상 새우 시료에서 DNA를 분리하는 단계; (b) 상기 (a) 단계에서 분리된 DNA를 주형으로 하고, 제3항 또는 제4항의 프라이머 세트를 이용하여 표적 서열을 증폭하는 단계; 및 (c) 표적 서열이 증폭되는 경우 가시배새우(Lebbeus Groenlandicus) 종으로 판정하는 단계;를 포함하는 가시배새우(Lebbeus Groenlandicus) 종 판별 방법을 제공한다.According to another aspect of the present invention, the present invention comprises the steps of: (a) separating DNA from a target shrimp sample; (b) using the DNA isolated in step (a) as a template, and amplifying the target sequence using the primer set of claim 3 or 4; And (c) when the target sequence is amplified, Prickly Pear ( Lebbeus Groenlandicus ) The step of determining as the species; Provides a method for determining the species containing a spiny shrimp ( Lebbeus Groenlandicus ).

본 발명의 상기 가시배새우(Lebbeus Groenlandicus) 종 판별 방법에서 상기 표적 서열은 이에 제한되지는 않으나, 서열번호 2의 DNA 서열일 수 있다. The spiny pear shrimp of the present invention ( Lebbeus Groenlandicus ) In the method for determining species, the target sequence is not limited thereto, but may be a DNA sequence of SEQ ID NO: 2.

본 발명의 실시예에서는 본 발명의 서열번호 2의 미토콘드리아 유전체의 삽입(insertion) 부위의 유전자 서열을 증폭하는 경우, 가시배새우(Lebbeus Groenlandicus)에서만 서열번호 5의 244bp 길이의 특이적인 밴드가 증폭되는 것을 확인하였고, 도화새우(Pandalus hypsinotus)와 보리새우(Penaeus japonicas)에서는 아무런 밴드를 형성하지 못하는 것으로 나타났다. In an embodiment of the present invention, when amplifying the gene sequence of the insertion site of the mitochondrial genome of SEQ ID NO: 2 of the present invention, the thorny lobster ( Lebbeus Groenlandicus ) was confirmed that a specific band of 244 bp length of SEQ ID NO: 5 was amplified, and it was found that no band was formed in Pandalus hypsinotus and Penaeus japonicas .

따라서, 본 발명의 미토콘드리아 유전체의 삽입(insertion) 부위의 유전자 서열에 기반한 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커를 이용하여 가시배새우(Lebbeus Groenlandicus)를 용이하게 판별할 수 있으며, 밴드 형성 유무의 확인을 통해 다른 새우 종들과 가시배새우(Lebbeus Groenlandicus)를 용이하게 구분이 가능함을 확인할 수 있었다.Thus, using the prickly pear shrimp (Lebbeus Groenlandicus) gene markers for species determination based on the gene sequence of the inserted (insertion) site of the mitochondrial genome of the present invention the visible fold shrimp (Lebbeus Groenlandicus ) can be easily identified, and other shrimp species and barbed shrimp ( Lebbeus Groenlandicus ) could be confirmed to be easily distinguishable.

본 발명의 특징 및 이점을 요약하면 다음과 같다:The features and advantages of the present invention are summarized as follows:

(a) 본 발명은 미토콘드리아 삽입 마커에서 유래한 가시배새우 종 판별용 유전자 마커 조성물, 가시배새우(Lebbeus Groenlandicus) 종 판별용 프라이머 세트, 이를 포함하는 키트 조성물 및 이를 이용한 가시배새우 판별방법을 제공한다.(a) The present invention provides a genetic marker composition for discriminating a species of prickly pear shrimp derived from a mitochondrial insertion marker, a primer set for discriminating a species of prickly pear ( Lebbeus Groenlandicus ), a kit composition comprising the same, and a method for discriminating prickly pear shrimp using the same do.

(b) 본 발명의 가시배새우 종 판별용 유전자 마커 및 상기 마커를 증폭하는 프라이머를 이용하는 경우, 본 발명의 가시배새우를 물렁가시붉은새우, 도화새우 등 독도 주변 해역에서 잡히는 다른 독도새우들과 손쉽게 구분할 수 있으며, 보다 신속하고 정확하며 경제적인 방법으로 새우의 종 분류가 가능하다.(b) In the case of using the genetic marker for discriminating the species of prickly pear shrimp of the present invention and the primer to amplify the marker, the prickly pear prawn of the present invention with other Dokdo shrimp caught in the waters around Dokdo, such as mulleung pear shrimp, It can be easily identified, and species classification of shrimp is possible in a faster, more accurate and economical way.

도 1은 가시배새우 미토콘드리아의 유전체 지도를 모식화하여 나타낸 그림이다.
도 2는 62종 새우류의 미토콘드리아 유전체를 분석하고, 각 유전자들의 배열과 그 순서를 분석한 결과를 정리하여 나타낸 그림이다.
도 3은 진화트리 분석을 통한 가시배새우의 유전적 위치를 분석하고 정리한 계통도이다.
도 4는 가시배새우 특이적인 삽입 마커 부위를 다른 새우류의 해당 서열들과 정렬하여 비교 분석한 그림이다.
도 5는 본 발명의 프라이머 세트를 사용하여 가시배새우(LGR, Lebbeus Groenlandicus), 도화새우(PHY, Pandalus hypsinotus), 및 보리새우(PJA, Penaeus japonicas)의 유전자를 증폭한 후, 전기영동한 결과를 촬영한 사진이다.
1 is a diagram schematically showing a genomic map of the mitochondria of prickly pear shrimp.
FIG. 2 is a diagram showing the results of analyzing the mitochondrial genome of 62 species of shrimp, and analyzing the sequence and sequence of each gene.
3 is a schematic diagram of analyzing and organizing the genetic location of spiny pear shrimp through evolutionary tree analysis.
FIG. 4 is a diagram showing a comparative analysis by aligning the specific insertion marker site of barbed shrimp with corresponding sequences of other shrimps.
Figure 5 is a spiny pear shrimp (LGR, Lebbeus Groenlandicus ) using the primer set of the present invention, dohwa shrimp (PHY, Pandalus hypsinotus ), and bovine shrimp (PJA, Penaeus japonicas ) after amplifying the genes, and taking the result of electrophoresis.

이하, 실시예를 통하여 본 발명을 더욱 상세히 설명하기로 한다. 이들 실시예는 단지 본 발명을 예시하기 위한 것이므로, 본 발명의 범위가 이들 실시예에 의해 제한되는 것으로 해석되지는 않는다.Hereinafter, the present invention will be described in more detail through examples. Since these examples are for illustrative purposes only, the scope of the present invention is not to be construed as being limited by these examples.

실시예 1. 가시배새우 미토콘드리아 유전체 분석Example 1. Analysis of mitochondrial genome of spiny shrimp

가시배새우의 미토콘드리아 유전체 분석 프로젝트를 진행하였다. Mitochondrial genome analysis project of prickly pear shrimp was carried out.

먼저, 근육 DNA로부터 생산된 promethION 장서열(long-read)을 wtdbg2(de novo sequence assembler)를 이용하여 de novo assembly를 수행하여 14,181bp 길이의 미토콘드리아 서열을 확보하였다. First, the promethION long-read produced from muscle DNA was subjected to de novo assembly using a wtdbg2 (de novo sequence assembler) to obtain a mitochondrial sequence of 14,181 bp in length.

긴 서열에 따른 높은 에러율을 보정하기 위하여, Assemble 된 가시배새우 미토콘드리아 서열에 500기가의 일루미나 단서열(short-read)을 minimap2 프로그램으로 정렬하여 3,372,627개의 short-read를 확보하였다(314,823 depth). In order to correct the high error rate according to the long sequence, 3,372,627 short-reads were secured by aligning 500 gigabyte Illumina short-reads to the assembled prickly pear shrimp mitochondrial sequence with the minimap2 program (314,823 depth).

정렬된 단서열을 기반으로 Pilon 프로그램으로 2번의 polishing을 거쳐 정확도 높은 가시배새우 미토콘드리아 유전체 서열을 확보하였고, NOVOPlasty(ver. 3.0) 프로그램을 이용하여 미토콘드리아 분석을 위한 씨드(Seed) 서열을 생산하였다.Based on the aligned single sequence, high-accuracy prickly lobster mitochondrial genome sequence was obtained through two polishing with the Pilon program, and a seed sequence for mitochondrial analysis was produced using the NOVOPlasty (ver. 3.0) program.

2.8기가(G)(2,832,869,352) 개의 일루미나 양방향 단서열과 상기 생산한 가시배새우 씨드 서열을 기반으로 NOVOPlasty(ver. 3.0) 어셈블리를 수행한 결과, 17,399 염기서열로 구성된 가시배새우 미토콘드리아 유전체 구조 분석을 완료하였다.As a result of performing NOVOPlasty (ver. 3.0) assembly based on the 2.8 giga (G) (2,832,869,352) illumination sequence and the produced prickly pear seed sequence, the analysis of the mitochondrial genome structure of prickly pear consisting of 17,399 nucleotides was completed. I did.

가시배새우 미토콘드리아 유전자는 MITOS (http://mitos.bioinf.uni-leipzig.de/index.py) 프로그램을 이용하여 예측(prediction)하였으며, 이를 통해 13개의 단백질 코딩 유전자와, 22개의 tRNAs 유전자, 그리고, 2개의 rRNAs 유전자를 동정하였다(표 1 및 도 1 참조).The mitochondrial genes of spiny lobster were predicted using the MITOS (http://mitos.bioinf.uni-leipzig.de/index.py) program, through which 13 protein-coding genes, 22 tRNAs genes, and Then, two rRNAs genes were identified (see Table 1 and FIG. 1).

[표 1] 가시배새우 미토콘드리아 유전자좌 정보 및 어노테이션[Table 1] Mitochondrial locus information and annotations of spiny pear shrimp

Figure 112019097711740-pat00001
Figure 112019097711740-pat00001

실시예 2. 가시배새우 종 특이 미토콘드리아 마커 탐색Example 2. Search for mitochondrial markers specific to Prickly pear species

새우류의 미토콘드리아 유전체의 유전자 서열 및 순서를 비교 분석하기 위하여, 62종의 미토콘드리아 유전체 서열(표 2)을 NCBI 데이터베이스에서 다운로드 받아 유전자 순서를 MitoPhAST(Ver. 3.0)을 이용하여 비교분석 하였다(도 2). In order to compare and analyze the gene sequence and sequence of the mitochondrial genome of shrimps, 62 kinds of mitochondrial genome sequences (Table 2) were downloaded from the NCBI database and the gene sequence was compared and analyzed using MitoPhAST (Ver. 3.0) (Fig. 2). .

그 결과, 62 종의 새우류의 미토콘드리아 중 58%(36종)는 도 2에 도시된 바와 같이, 십각목 새우종의 대부분 유전자 배열 순서가 공통적으로 일치하는 구조인 G1(이를 주요구조로 놓고 분석함)에 해당하는 유전자 순서를 가지고 있고, 일부 새우류는 속(genus) 특이적인 트랜스로케이션(translocation), 인버전(inversion) 등의 변형이 일어났음을 확인하였다. As a result, 58% (36 species) of the mitochondria of 62 species of shrimp were analyzed by placing it as the main structure, which is a structure in which most of the gene sequence of the Shrimp species of Decagonal order are in common, as shown in FIG. ), and some shrimps have been confirmed to have undergone modifications such as genus-specific translocation and inversion.

그러나, 가시배새우의 미토콘드리아 유전자 배열 순서도 다른 새우 종들에서 나타나는 주요구조들과 동일함을 확인하였다. 하기 [표 2] 및 [표 3]은 십자목 새우류 62종의 미토콘드리아 유전체 정보 및 유전자 순서 패턴에 따른 그룹핑을 정리하여 나타낸 것이다. However, it was confirmed that the sequence of mitochondrial gene sequence of prickly pear shrimp was the same as the main structures found in other shrimp species. [Table 2] and [Table 3] show the grouping according to the mitochondrial genome information and gene sequence patterns of 62 species of cruciferous shrimp.

[표 2][Table 2]

Figure 112019097711740-pat00002
Figure 112019097711740-pat00002

[표 3][Table 3]

Figure 112019097711740-pat00003
Figure 112019097711740-pat00003

상기 62종의 새우류들와 가시배새우의 진화적 연관성을 찾기 위하여, 62개의 미토콘드리아의 유전체의 단백질 서열을 정렬(align)하여 최대 가능성 분석(maximum likelihood analysis)을 토대로 계통도(phylogenetic tree)를 작성하였다(도 3). In order to find the evolutionary relationship between the 62 species of prawns and prickly pear prawns, a phylogenetic tree was created based on the maximum likelihood analysis by aligning the protein sequences of 62 mitochondria ( Fig. 3).

그 결과, 가시배새우는 생이하목 새우류들과 유전적으로 하나의 계통(clade)으로 묶였으며, 미토콘드리아 유전체 서열이 밝혀진 새우류 중 도화새우과 (Pandalidae family)에 속하는 도화새우(Pandalus hypsinotus), 및 두마디 새우(Chlorotocus crassicornis)와 가장 가깝게 분류되었다. As a result, prickly pear shrimp was genetically bound to a single clade with the suborder shrimps, and among the shrimps whose mitochondrial genome sequence was identified, the lobster shrimp belonging to the Pandalidae family ( Pandalus hypsinotus ), and two segments. It was classified closest to shrimp ( Chlorotocus crassicornis ).

가시배새우 미토콘드리아 유전체의 다형성을 조사하기 위하여, 주요구조에 해당하는 유전자 순서를 갖는 것으로 분류된 G1 그룹의 34개 종의 새우류의 미토콘드리아 전장 유전체를 clustalW 프로그램을 이용하여 정렬(alignment)하였다. In order to investigate the polymorphism of the mitochondrial genome of prickly pear shrimp, the full-length mitochondrial genomes of 34 species of shrimp in the G1 group classified as having a gene sequence corresponding to the major structure were aligned using the clustalW program.

그 결과, 가시배새우는 NADH dehydrogenase subunit 3(NAD3) 유전자의 하부에 해당하는 4,480번째 염기서열에서 두마디 새우(Chlorotocus crassicornis) 미토콘드리아 서열 대비 39 base-pairs(bp)의 insertion이 있는 것으로 확인되었다(도 4 참조). 또한, 이 서열은 61종의 다른 새우류에서도 전혀 발견되지 않은 서열로 밝혀졌으며, 가시배새우 종 특이 서열로 확인되어 서열번호 2의 미토콘드리아 유전체의 삽입(insertion) 부위의 유전자 서열을 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커로 선발하였다. As a result, spiny pear shrimp is NADH dehydrogenase subunit 3 (NAD3) two words from the 4480th base sequence corresponding to the lower part of the shrimps gene (Chlorotocus crassicornis ) It was confirmed that there was an insertion of 39 base-pairs (bp) compared to the mitochondrial sequence (see FIG. 4). In addition, this sequence was found to be a sequence that was not found in 61 species of other shrimps, and it was identified as a specific sequence for the species of prickly pear, so that the gene sequence of the insertion site of the mitochondrial genome of SEQ ID NO: 2 was changed to Lebbeus. Groenlandicus ) was selected as a genetic marker for species discrimination.

실시예 3. 가시배새우 종 특이 프라이머 제작 및 프라이머를 이용한 종 판별Example 3. Preparation of primers specific to species of thorny embryo shrimp and species identification using primers

상기 가시배새우 종 특이적인 서열인 서열번호 2의 미토콘드리아 유전체의 삽입(insertion) 부위의 유전자 서열을 증폭할 수 있는 서열번호 3 및 서열번호 4의 프라이머 세트를 제작하여 [표 4]에 나타내었다.A primer set of SEQ ID NO: 3 and SEQ ID NO: 4 capable of amplifying the gene sequence of the mitochondrial genome insertion site of SEQ ID NO: 2, which is a sequence specific to the species of prickly pear species, was prepared and shown in [Table 4].

[표 4][Table 4]

Figure 112019097711740-pat00004
Figure 112019097711740-pat00004

비교 실험을 위해 CO1F(LCO1490) 및 CO1R(HC02198) 프라이머를 대조군으로 사용하였다. 상기 CO1F(LCO1490) 및 CO1R(HC02198) 프라이머는 무척추동물 문(invertebrate phyla)의 후생동물(metazoan)들의 미토콘드리아 COI 유전자(mitochondrial cytochrome c oxidase subunit I)를 PCR 반응을 통해 증폭시켜 종 동정 등의 용도에 사용되는 범용 프라이머로 사용되고 있다. For comparative experiments, CO1F (LCO1490) and CO1R (HC02198) primers were used as controls. The CO1F (LCO1490) and CO1R (HC02198) primers are used for species identification by amplifying the mitochondrial COI gene (mitochondrial cytochrome c oxidase subunit I) of metazoans of the invertebrate phyla through PCR reaction. It is used as a general purpose primer used.

상기 실시예 2에서 선별한 미토콘드리아 유전체의 삽입(insertion) 마커를 이용하여 가시배새우 종을 판별할 수 있는지 알아보기 위하여, 가시배새우의 게놈 DNA(genomic DNA)를 분리하고 상기 미토콘드리아 유전체의 삽입(insertion) 마커 기반의 프라이머 세트를 이용하여 PCR을 수행하였다.In order to determine whether the species of prickly pear shrimp can be identified using the mitochondrial genome insertion marker selected in Example 2, the genomic DNA of prickly pear shrimp was isolated and the mitochondrial genome was inserted ( insertion) marker-based primer set was used to perform PCR.

구체적으로, 유전형 분석(genotyping)을 위한 게놈 DNA 분리를 위하여, 가시배새우(Lebbeus Groenlandicus)를 분쇄한 후, 액체 질소를 처리하여 동결하고 분말화하였다. 상기 가시배새우 분말에 700㎕의 마이크로프렙 버퍼(microprep buffer)를 첨가하고 65℃에 15분간 배양하면서 5분 간격으로 혼합하였다. 그 다음, 700㎕의 클로로포름:이소아밀알코올(chloroform:isoamylalcohol = 24:1)을 첨가하고 1분간 혼합한 후 11,000rpm으로 15분간 원심분리하여 상층액을 획득하였다. 분리한 상측액에 약 60% 부피의 이소프로판올(isopropanol)을 첨가하고 DNA가 응축될 때까지 혼합한 후, 13,000 rpm에서 5분간 원심분리하고 상층액을 제거하여 DNA 펠렛(pellet)를 획득하였다. 상기 획득한 DNA 펠렛을 70% 에탄올로 세척 및 건조한 후, RNaseA가 50 mg/L 첨가된 1xTE 버퍼 50 ㎕를 첨가하고 37℃에서 120분간 두어 DNA 펠렛 내 포함된 RNA를 제거하여 가시배새우의 DNA를 획득하였다. 그 후, 증폭 반응에 주형(template)으로 사용하기 위하여 상기 가시배새우 DNA의 농도를 측정하고 약 100 ng/㎕가 되도록 희석하였다.Specifically, in order to isolate genomic DNA for genotyping, the spiny lobster ( Lebbeus Groenlandicus ) was pulverized and then frozen and powdered by treatment with liquid nitrogen. 700 µl of microprep buffer was added to the prickly pear shrimp powder, followed by incubation at 65° C. for 15 minutes and mixed at intervals of 5 minutes. Then, 700 µl of chloroform: isoamyl alcohol (chloroform: isoamylalcohol = 24:1) was added, mixed for 1 minute, and centrifuged at 11,000 rpm for 15 minutes to obtain a supernatant. About 60% volume of isopropanol was added to the separated supernatant, mixed until the DNA was condensed, and then centrifuged at 13,000 rpm for 5 minutes, and the supernatant was removed to obtain a DNA pellet. After washing and drying the obtained DNA pellet with 70% ethanol, 50 µl of 1xTE buffer to which 50 mg/L of RNaseA was added was added and left at 37° C. for 120 minutes to remove RNA contained in the DNA pellet, Was obtained. Then, in order to use as a template in the amplification reaction, the concentration of the spiny lobster DNA was measured and diluted to about 100 ng/µl.

그 다음, 상기 실시예 2에서 발굴한 미토콘드리아 유전체의 삽입(insertion) 마커를 증폭하기 위하여 상기 획득한 가시배새우 DNA를 주형으로 하여 상기 서열번호 3 및 서열번호 4의 프라이머 세트를 이용하여 PCR을 수행하였다. Then, in order to amplify the insertion (insertion) marker of the mitochondrial genome discovered in Example 2, PCR was performed using the primer set of SEQ ID NO: 3 and SEQ ID NO: 4 using the obtained prickly pear DNA as a template. I did.

비교 실험을 위하여, 상기 DNA 추출방식과 동일한 방식을 사용하여 추출한 도화새우(Pandalus hypsinotus)와 보리새우(Penaeus japonicas)를 대조군으로 사용하였다. For the comparative experiment, the dohwa shrimp ( Pandalus hypsinotus ) and barley shrimp (P enaeus japonicas ) extracted using the same method as the DNA extraction method were used as controls.

PCR을 위하여 하기 [표 5]에 기재된 반응물 조성으로 PCR 반응물을 구성하였고, 하기 [표 6]의 조건으로 PCR을 수행하여 증폭된 마커 산물을 획득하였다. For PCR, a PCR reaction product was configured with the reaction product composition shown in the following [Table 5], and PCR was performed under the conditions of the following [Table 6] to obtain an amplified marker product.

[표 5][Table 5]

Figure 112019097711740-pat00005
Figure 112019097711740-pat00005

[표 6][Table 6]

Figure 112019097711740-pat00006
Figure 112019097711740-pat00006

그 다음, 상기 증폭된 Indel 마커 산물은 2.5% 아가로오스 겔(agarose gel)에 로딩하고, 100V에서 50-60분간 전기영동하여 증폭 밴드를 확인하였다.Then, the amplified Indel marker product was loaded on a 2.5% agarose gel and subjected to electrophoresis at 100V for 50-60 minutes to confirm the amplification band.

그 결과, 도 5에 나타낸 바와 같이, 비교예의 CO1F(LCO1490) 및 CO1R(HC02198) 프라이머를 사용한 대조군에서는 3종 새우 모두 같은 사이즈의 밴드만이 검출되어 종래 무척추동물 문(invertebrate phyla)의 후생동물(metazoan)들의 종 구분을 위해 사용되던 프라이머 세트를 이용하는 경우 새우류 동물 간의 종 구분이 불가능 함을 확인할 수 있었다. As a result, as shown in FIG. 5, in the control group using the CO1F (LCO1490) and CO1R (HC02198) primers of the comparative example, only bands of the same size were detected in all three types of shrimp, so that the metazoans of the conventional invertebrate phyla ( metazoan), it was confirmed that it was impossible to distinguish between species among shrimp animals when using the primer set used for species identification.

반면, 본 발명의 서열번호 2의 미토콘드리아 유전체의 삽입(insertion) 부위의 유전자 서열을 상기 프라이머 세트를 이용하여 증폭하는 경우, 가시배새우(Lebbeus Groenlandicus)에서만 서열번호 5의 244bp 길이의 특이적인 밴드가 증폭되는 것을 확인하였다. 이와는 달리 도화새우(Pandalus hypsinotus)와 보리새우(Penaeus japonicas)에서는 아무런 밴드를 형성하지 못하는 것으로 나타났다.On the other hand, when the gene sequence of the mitochondrial genome insertion site of SEQ ID NO: 2 of the present invention is amplified using the above primer set, thorny shrimp ( Lebbeus Groenlandicus ) it was confirmed that the specific band of 244bp length of SEQ ID NO: 5 was amplified only. Contrary to this, it was found that no band was formed in Pandalus hypsinotus and Penaeus japonicas .

상기와 같은 결과를 통해 본 발명의 미토콘드리아 유전체의 삽입(insertion) 부위의 유전자 서열에 기반한 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커를 이용하여 가시배새우(Lebbeus Groenlandicus)를 용이하게 판별할 수 있으며, 밴드 형성 유무의 확인을 통해 다른 새우 종들과 가시배새우(Lebbeus Groenlandicus)를 용이하게 구분이 가능함을 확인할 수 있었다.Based on the results as described above, the thorny embryo shrimp ( Lebbeus) based on the gene sequence of the insertion site of the mitochondrial genome of the present invention Groenlandicus ) It is possible to easily distinguish Lebbeus Groenlandicus using a genetic marker for species identification, and it is possible to easily distinguish between other shrimp species and Lebbeus Groenlandicus by confirming the presence or absence of band formation. I could confirm.

이상으로 본 발명의 특정한 부분을 상세히 기술하였는 바, 당업계의 통상의 지식을 가진 자에게 있어서 이러한 구체적인 기술은 단지 바람직한 구현예일 뿐이며, 이에 본 발명의 범위가 제한되는 것이 아닌 점은 명백하다. 따라서, 본 발명의 실질적인 범위는 첨부된 청구항과 그의 등가물에 의하여 정의된다고 할 것이다.As described above, specific parts of the present invention have been described in detail, and it is obvious that these specific techniques are only preferred embodiments, and the scope of the present invention is not limited thereto for those of ordinary skill in the art. Therefore, it will be said that the substantial scope of the present invention is defined by the appended claims and their equivalents.

<110> Genome Research Foundation <120> Genetic Marker Composition for Discrimination of Lebbeus Groenlandicus Species Originated Mitochondria Insertion Markers and Diagnosing Method using the Same <130> PN190065AN <160> 5 <170> KoPatentIn 3.0 <210> 1 <211> 17399 <212> DNA <213> Unknown <220> <223> Lebbeus Groenlandicus <400> 1 tagataacgt cacggtgatt gttttcaaca aatcacaaag atattggcac tttatatttt 60 atttttgggg cttgagcggg tatagtaggt accgccttaa ggcttctaat ccgagcagaa 120 ttaggacaac ccggaagtct cattggaaac gaccaaattt ataatgtaat tgtcacagca 180 catgccttcg ttataatttt ctttatagtt atacccatta taatcggagg gtttggtaat 240 tggttagttc cccttatatt aggagctcct gatatggcct tcccccgtat gaacaacata 300 agattctggc ttcttccacc ttctttaact ttacttctat caaggggaat ggttgaaagg 360 ggagttggaa caggatgaac tgtctaccct cctttggcgg caggtattgc ccatgccggt 420 gcttctgtag acatggggat tttctcacta cacttggcgg gggtttcttc aatcttagga 480 gcagttaatt tcataacaac agtcattaat atacgatcta ccggaatgac aatagatcgc 540 atgcctttat ttgtttggtc agtattctta acagcaatct tattgcttct ctcactacca 600 gttcttgcag gagcaattac aatactcctt acagaccgaa atttaaacac ctctttcttt 660 gaccctgctg gaggagggga ccctatcctt taccaacatt tattttggtt cttcggccac 720 ccagaagttt atatcttaat cctacctgcc tttggcatga tttcccatat tattagacag 780 gagtcaggga aaaaagaaac attcggcact ctaggtataa tttatgctat aatagcaatt 840 ggcatcctag gttttgttgt atgggctcat catatattca cagtaggaat ggatgttgac 900 acccgtgctt attttacatc tgcaactatg attattgccg ttccaacagg aattaaaatc 960 ttcagttggt taggaactct acatgggacc caattcacct atagcccatc ccttctatgg 1020 gcgcttgggt ttgtgttctt attcaccgta ggaggtttaa ctggggttgt tttagctaac 1080 tcctcattag atatcatcct tcacgatact tattatgtgg tggcccattt tcactatgtt 1140 ctctcaatag gcgctgtttt tggtattttt gctggtattg cacattgatt ccccttgttc 1200 acaggaatca caataaaccc taagtggctc aaaattcact tcataacaat atttattggg 1260 gtaaatatta cctttttccc ccaacacttt ttaggactga atggaatacc tcgacgttac 1320 tcagactacc ctgacgctta tatcacatga aatgtagtct cctctattgg gtcaaccatt 1380 tccctattag cagttcttgg ctttgttata attgtgtgag aggccttcgt tagtctacga 1440 ccagtaatat tcactcttgc ccttccaact tctattgaat gacaacaaaa ccttccaccg 1500 gccgaccata gttttataga aatcccaata attgcaaaag gatatctagg gtggcagatc 1560 agtgccctga gtttaagcct caactaggta attatttatt acccctggaa aatggcaaca 1620 tgatccgcac taggcttcca agatagagtg tctcctttaa tggaacaatt aattttcttt 1680 cacgaccacg ctatattagt gttaatttta attactacct tagtagggta tataataggc 1740 tctttatttt ttaactctct tacaaaccgc taccttttag agaatcaaac aatcgaaatt 1800 atttgaacaa ttctacccgc ttttatttta atttttattg ccctaccgtc cctgcgccta 1860 ctttaccttt tagatgaagt aaatacccca agggtaacct tgaaagccat cggccaccaa 1920 tgatattgaa ggtatgaata ctctgatttc cttcaagtag agtttgacgc ctatatagtt 1980 ccttcggcag acttaccaga ctcaggattc cggcttttag atgtagacaa ccgaaccgtc 2040 ttaccaataa acacccaaat ccgaaccctt atctctgcag cagatgtaat tcactcctga 2100 acagtacctg cattaggggt aaaagctgac gcgatccctg gccgactaaa ccaaatcaga 2160 ttttacataa accgggcggg gttatttttt ggtcaatgtt ctgaaatttg cggcgcaaat 2220 cacagattta tacctattgt tattgaaaga gtttcaatta atgctttctt agattgagtt 2280 gtagcaacta gagacgacgc cttatcagat gactgaagtg taagttcagg tcttttaacc 2340 ctgctatagt agaaacaact acttctgata accttaaaat tagttaaata ataacatagg 2400 cttgtcaagc ctaaattatc aaactttgat attttaaaca ctaatgcccc aaatagcccc 2460 ccttctttgg ttacctttat ttattttttt ctctgctatc tttttaatat ttactgcttt 2520 taactactct attaaaaccc caattaaaat ttctaatgta tcaagaacaa ccttaagcca 2580 caaattaacc tggaaatgat aactaattta ttttctagtt ttgaccctat gtcaagagtt 2640 ttcaacctct cacttaactg actctctgct cttttaggac taaggtttct accttattta 2700 tactgggcta tacaaacccg ctgatcccta ctgtgggcta ataccactat tgcaatccac 2760 aaagaattta aagttttatt aggcccgact gactcagggg cctctatctt atttgttagt 2820 ttatttagct ttatcgtatt taataatttt ttaggcttac taccttatgt tttcacaaga 2880 tctagccacc tcaccataac actagctctt gcccttcctt tatggttatc ttttataacc 2940 tacggaatta ttgtacacac ccaacatata ttagcccact tagtcccctc tgggaccccg 3000 ggcgccttaa taccttttat agttttaatt gaaacagtaa gtattataat ccgcccatga 3060 accctagccg tgcgattagc cgctaatata atcgcaggac acctcttact aaccctctta 3120 ggaaacactg gaacctctct ttcctttaca ctcctatccg tccttatttt agcccaaatt 3180 ctccttctaa tcttggaagc agccgttgct gttattcaat cctatgtgtt tgctgttctt 3240 aggactctct acgccagaga agttaactaa tgtcaacaca cggacaccac acataccact 3300 tagtagatat aagcccttga ccccttacag ggtctattag ggccataata ttaacaactg 3360 gattagttaa atgatttcac caatttaaca tagacctcct tattttaggg tttttagcca 3420 cattattaac aataattcaa tgatgacgcg atatcacacg agagggtacc taccaaggcc 3480 ttcacacaaa ccgtgtggtt ataggattac aatggggtat aatcttattt atcgcctctg 3540 aagtcttgtt tttcttctcc tttttttggg ccttcttcca tagaagctta gcccctacct 3600 cagagttggg gaattgctgg ccccctattg gaattcaacc ttttgacccc ttccaaattc 3660 cccttctaaa tacagccatt cttctagcct cgggagctac tgttacctgg gcccatcacg 3720 cccttctaga atcaaatcac acacaagccc tccaaaggtt agccttaaca gtaattctag 3780 gaatttattt ttcagcactt caagccgtag aatatattga ggctcccttc tctattgcag 3840 attctgttta tggagcaacc ttttttgtag ccacagggtt ccatgggtta cacgtgttaa 3900 ttggatcttc ttttttatta gtttgcctaa tccggatgtt tatgtgccat ttctcagaaa 3960 cccaccactt tggatttgaa gccgccgcat gatactggca ctttgttgat gtagtatgac 4020 tgttcttata tatttccatt tactgatgag gtggttaaaa agaaaatatt tttttagtat 4080 aattagtatt attgacttcc aatcaatagg cctggggttc ccagaaaaaa taattttttt 4140 acttataact ataactttaa tcatccttat attagctcta gtagtaataa taatttcctc 4200 tctcctctct aaaaaaataa ttacagaccg agaaaaaaac tcgccgtttg agtgtggatt 4260 tgacccgaaa ggttccgccc gtttgccatt ttccctccga ttttttttga ttgctgttat 4320 tttcttaatt tttgatgtag agatcacact tctcttaccc ttagcctcaa tttataatac 4380 gagtagaatc ttctcttgaa cagttacagg aatatttttt cttattattt tactagcggg 4440 gctttaccac gaatgaaacc aaggagccct taattgaaaa gagtaagcaa ctaaaatttc 4500 ctgctcaata ataacgacac tgttagaagc tatagtcaac aatgattcct gatttgcaat 4560 taggaggtgc tctattgagc tggcttcaag ccaagaagcg aacgtcgctt ttaggttcga 4620 tctaaactcc ggaggtcctt ctcccttggc tattaattaa agccaaaaag cggcctatca 4680 ctgttaatga taaaattgaa agcgtctttc taattaaaga gaaatgtaaa tgctacaaga 4740 aaaggtttct aaccttagct tttgcggcct aagccccgct ctttctccgt cattatagtg 4800 taaataacac actatacttt cattgtagag ataaagggac tccttttaaa gatacctagg 4860 ggcagaatgc cacttctaca gcttcaatgt aacgcccttt tattaaacta cccaagtagg 4920 acccttactt atagaaaact atccttctat aaaaaccatt aaagcaacta accatataac 4980 taaagaaatc atataaattt taaccctatt atcctgagct acctgcaaat aattagaaga 5040 tttaattaaa gttgaataag ccccctgacc accataaaac tcccttcacc ctatatcccc 5100 tacccccgaa taaaacttac caaccttcaa aatacttaaa ctaacccccc gtgtagaaat 5160 taagggtaaa aaccatatag accccctaaa tacaactaaa ctataataac gcagagattt 5220 taaagaataa ttcaccctta taatatttaa taaataaccc aataaagctc cagcccctct 5280 cactaataaa gctaataatt ttatactcct tggcaagcaa attatataag gggcgggaaa 5340 aataagtcaa gctaaagccg cgccgccaaa aaccgagcct cctcctaata ataatattgg 5400 ccaagttata acgggattgt cgtccctcac ccctctttcc gcactaagat taaaatctct 5460 cactaaccta taaaaaacca aacgaaaagt ataacacact gttaaaccag tggccactac 5520 taaaagccaa aagcaaacct cgtttaaggg agatgaaaag gcgacctcta aaattaaatc 5580 cttagaataa aaccctgcta aaaaaggtgt tccacataga gctaagttag caagattcac 5640 ccttgctact ctaagcggta taaagctaac agtacaccct atgacacgaa tatcttggta 5700 atctccaaca ctatggataa tagaacctgc acatataaat aaaagggcct taaagagagc 5760 atgagctaac aaatgaaaaa atgccaactc ggcccatcct atagctaaaa ttgttattat 5820 aactcctaat tgactaagtg tcgacaaagc aataattttt ttaagatccg tttcaaaatt 5880 agcacctaat ccagccataa atatagttaa cctagctaat aataggagac aactttgctc 5940 tgaagttccc tctaacgcag gactaaaccg aattaaaagg taaacccccg ccgtaacaag 6000 agtagaagag tgaactaatg ctgaaactgg agttggggca gctattgccg caggaagtca 6060 cgctgaaaaa ggaatttgag cccttttagt tatagcagct actacaataa aagctactaa 6120 ccccaattgg gcccccatcg cttccctccc aacataaaaa ataaaatttc aacccccaag 6180 actaaatatt aatgcaatac taagtaggat acaaacatct cccacccgat tggaaagtgc 6240 agttaacata cccgcgttag cagacttttc attttgataa tagataacca gtgcataaga 6300 aacaagccct aatccatctc agcccaaaag aatcctaatt atattaggac taataatcaa 6360 caaccctatt gataaaacaa aacctaaaac caagtatata aaacgattaa tattaggatc 6420 tctagccata taactccccc tataaaataa aactatagaa gagataaacc tcacaaaagc 6480 taaaaatatt atagaaaccc aatcaataat taaccttata cccaaataag acgaatttaa 6540 agttacaatt tctcactcaa taaagaaaga attgccggat aaaagcaaaa aaagggaaac 6600 ccttaagccc cttaaagcta ctatagctag gaaaactatt ctaataacat ttatttttaa 6660 accccataac actgttcaaa atactttatc catatatctt tggccccaca aaccaacatt 6720 tttattaaac tatttaaact aaattaaatt taaaaccaat cttcttttta aaattaatag 6780 atttaagggt agtcaatgaa gcaccaaaat taaaaactca cgcaccttac cagaacaaca 6840 cgaaaataaa gaattaacaa acttgccatg ttggcttatt gaatatatat ataaagtgta 6900 ggccgccctg aaaaaagata aagctgctac ccttaccaaa gcaaacttag atcaacaacc 6960 tactcttata ataagtctaa tctcacctaa aagattaagg gaaggagggg ctgccatatt 7020 acaagccctt aaaacaaatc accataaagc catcctaggt ataaaactaa gcaagccctt 7080 cctaatgaaa aggcttcgac tcccaatccg ttcataagct atattagcaa tacaaaaaag 7140 gccagaagaa caaagaccgt gcccaactat aacagaaact gctcctccta acccccatca 7200 cctaaacaat ataaggccac acaacactaa acctatgtga gcaacagagg aataagcaat 7260 taaagattta acatccgcct ggcgcatgca aattaaacta acaattgcac cccctgtggc 7320 accaaatcta atccaaactc aagtaaatct taaagactgt tctttaaata aaggcagcac 7380 ccgtaaaagc ccataacccc ctaactttaa taaaacacct gctaaaatca ttgaccccgc 7440 tacgggagct tctacatgag ccttaggcaa ccataaatga actataaaaa caggaagttt 7500 aacaatgaaa gcaaagaccg aacaaaaata tcaaattaac cttgtagaag ttgaagaggt 7560 taacccgtct accagcccaa taaccaaagt tcctccttgg cctttaaacc taagtaaaga 7620 aactaataag ggtagtgagg caaatagtgt ataaaataat atatacaccc ccgcttgaag 7680 acggtcgggt tggtaccccc aacctaaaat taaaataaaa gtaggaatta aagacctctc 7740 aaaacaaaca taaaataata aataatccat gcaagaaaat gttaaaacaa gacttaataa 7800 caaaagaaca tttaccttta aaaacaacct aaaatagttt cctaagtcat aaatcttctg 7860 tctccttcca actacaagag cggccaccca aaaacttaac aaaattaaga catacctaat 7920 cgagtcaatt ccaaatataa cccctaagcc cgcaatgtga gagccaactc ctgcaaataa 7980 actaaataaa accctaacta aaagcaacga acaaaaaaga gtagttcact ccctacaaat 8040 tataagtatc gataatacaa aaaaaacaaa ctttaacatt gaagtgctct aaaactatta 8100 aaattatcat tcccgtgtct gcgaaccact gaaacaagca aagctaaacc tagtgcccct 8160 tcgcaagccg ctaaagttaa aaaaaataaa acaaaaaaat tatctcctcc taaagtaaca 8220 atacttaaac ttataaccca aaaaactcta agtataataa actcaagcct taataaagaa 8280 cttaataaat gtttacgaac cctgacaaaa gaacccactc cacacaataa tataacaact 8340 ggaatggtgt attgaaataa aagaactaac attagcctta atagtttata taaaactccg 8400 gtcttgtaaa ccgaaaaaga aattattttt cttaaagcat cagaggagag aatgcccttc 8460 ccatctttag tctccaaaac taatattcta attaaactat cgccctgctc tgaaatttct 8520 cttacactta acataatatc tttgatctta accacctctc ttattttttc acaaataacg 8580 cagccccttt ccataggatt aataattgtg gttcaaacca tcttaattgc atttgttgcc 8640 ggagttggaa gtaactctac ttgattctca tatatcctat tcctagtttt cttaggagcg 8700 atgctcgtgt tgttcctcta tgttgcctcc ttagccccaa atgaagcctt tccaatctca 8760 tctactataa ttgcaatttt attaatcgga attctaagcc ccctcccact ttttctctta 8820 gatcaaatag ccgtcccact taaaataaca attgaaggaa cttcttttag agcagaacaa 8880 attataattt cagccaaata taaactaggg ctaatatata gcttaccttc tataaaccta 8940 acgatatata tcatcatata tttactacta acacttattg ttgtagtaaa aattacaaac 9000 accttttttg ggccacttcg tttaacctaa tgacaatacc cttacgtaaa tcccatcccc 9060 tcttcagaat tgctaacgga gccttagtag acctgccgac gccggcaaat atctcaatcc 9120 tttgaaactt tggatccctc ttagggctat gtttaatcac ccaaatcgcc acggggcttt 9180 tccttgctat acattacaca gcagatatta gactagcttt ttcaagtgtt gctcatattt 9240 gccgagacgt aaattatgga tgattacttc gaactttaca cgccaatgga gggtccttct 9300 tcttcatttg cctttttata cacattgggc gaggtattta ttatggctca tttatgttca 9360 tacatacttg aatagtcggt gtcgtaatcc tattcttaac tataggaact gcgttccttg 9420 gatatgtgtt accttgagga caaatatcct tctgaggagc aacagttatt actaacttag 9480 cctcagccat cccttatatc ggaactaatt tagtccagtg aatctgaggg gggtttgcag 9540 ttgataatgc cactcttaca cgctttttta cttttcactt tttattccct tttatagttg 9600 ctgcagcaac tatagtccat attctattcc tacaccaaac aggatctaat aacccacttg 9660 gaatttctag ccaagtagat aaaattccct tccaccctta cttctcgtat aaagatattg 9720 taggttttat tgtaataatc gcaggacttg ttattttaac acttttaaac ccttacctat 9780 taggagatcc cgataacttt atccctgcca atcctttagt aacaccggcc catatccaac 9840 cagaatgata ctttttattt gcttatgcca tcctacgatc catccccaat aaattaggag 9900 gagttattgc cttagtgctt tctgttgcta tcttgtttat ccttcctttt acccacaagg 9960 caaaattccg aagtcttgca ttttaccctt taaaccaatt cttattctga tccatagtag 10020 ttattgttat tttactaacc tgaattggag cccgacctgt tgaagacccc tatgttttaa 10080 ctgggcaaat tctaaccgtt ttatactttg cctattatat tgtcaaccct ctcagattaa 10140 ttttatggga taaaatacta gattgagaag ttaactttat ggaaagttta tgctttgaaa 10200 gcatactaaa agagttcaat tcccttactt cttccctaat tctaacttta ttacaaagtt 10260 atattaatat cacctccaat aaaaccttta ttcccatata aaatacacaa aaatttaagg 10320 ctacaggcaa aaaccttttt caagccaaat atattaactt atcataacga aagcgcggta 10380 gcgttccacg cacccataca aaactaaacg caacaaaaag ggcttttaaa taaaaaacga 10440 accttattaa acttccccct ataaaaataa cactaaaaag aacccttata aaaagaatac 10500 tagcatactc tgctataaaa ataagagcaa agccgcctgc cctgtactca gtattaaaac 10560 cagaaactaa ctctgattca ccttctgcaa aatcaaaagg agtccgatta gtctcagcta 10620 aacaagatgc aaatcaaaca agagccaagg ggcccataaa aactctgaac caaagatacc 10680 gctgataatc tctaaacaaa ctcagcctaa acccacccac taaaaataaa gtacccaata 10740 aaattaaagc caaccttacc tcataagaaa tagtttgagc tacagcacgt aaacacccaa 10800 gcaaggcata tttagagtta gaggaccaac ccgctcctat tgtagtgtac actcctaaac 10860 tagtacaaca taaaaaaaac aaaaccctta tcttaaaact taacaaacca aactcatagg 10920 gcattctaca ccaaactaat aaagctacaa atagcctaaa aacaggagat acataataag 10980 gaataaaatt agatattgta gggagagttt gctccttagt gaataatttt actgcgtctg 11040 aaaaaggctg aagaatccct ataaacccta ctttatttgg ccctttccgg atttgaatat 11100 aacctaaaat ttttcgctca agaagagtta aaaaagcgac tgccaccaac acaaaaataa 11160 ctaataaaat aaccctaact agcttagata actctataat aaactttaca aaagtttgtt 11220 atttatagaa cttgcctata tatttaggtc ctaagcctaa cgcactactc tgccaaaata 11280 acaaaattac tattcatcaa aatctaacag atttgctggc ccttttgatc ctttcgtact 11340 aaaaagggct tcttttacct gagagataga aaccaacctg gctcacaccg gtttgaactc 11400 aaatcatgta aagttttaat ggtcgaacag accaactaac taagctgcta cacttaaaag 11460 atactttaat tcaacatcga ggtcgcaact aatttcatcg ataggaactc tcagaaaaaa 11520 ttacgctgtt atccctaaag taacttaatc ttttaatctt tattaaagga tcaactaact 11580 aaataaaact attcctttca cttacagtta ttaaaaatta tataatagtc gccccaacct 11640 aacaataata catctcactc aatttaaaca aaaatttatg aagcagaaat aaattgtaaa 11700 gttttatagg gtcttatcgt cccctcagaa tatttaagcc ttttcactta aaagtaaaat 11760 tcaattttta aggaggagac agcttccttc tcgtgcagcc attcattcca gcctccaatt 11820 aagagactat tgattatgct accttcgcac ggtcagaata ccgcggccct ttagcacaca 11880 gccagtgggc agactaaatt gtttatataa accaacaaaa atgtttttga taaacagccg 11940 gaagtctaat ttgccgagtt aattctcctt aacaaaaata tattataatt taatcaaatt 12000 ttaattccat aaaacacaat aaacactcta ctaatacaac cactttaact atatttttta 12060 tattaaaaca cactttctct taacttaatt caaacaaata aaaatatata tttattcacc 12120 acattgatta taacaccctc taaaattagc taattttaag cctattccaa tgaaaatata 12180 acttatttaa ccttaaacta aactaactaa cgagctcatg ccccctaaaa tctcagccaa 12240 cctaactaac aattgacgct aaattaaatt tatttcagaa aaaattagat atagaaagac 12300 gactagcata tcactcctaa tctttaattt ctaatacctt taccacggta attagtttta 12360 aacattagct cctttccctt cgaaaataaa taaaatttta tagccaaata ggaagaccct 12420 gatacaaaag gtacaaatat ttctttttat taattcacaa agttccccta cagtactttt 12480 aacctttaac caacgacact aatttcaggc gacttactat taacatatta ttcccattac 12540 tctgaccaat ataacaattt aaccttatta atcaattatt tatcctttta gagcacgtcc 12600 ttattagacg atcacttcat tgtaagtgaa gcactttatt agctatcctc tatataaaat 12660 tccaggggcc ccttccggca cccctactat gttacgactt atctcatttt aagatgagag 12720 cgacgggcga tgtgtacata tcacagagct aaaatcaaat taccttaata aaataatatt 12780 acaattaaat ccaattttta aaagtatttc acccttttag ccaataactt aattaactgt 12840 aacccactta cactttttta taagctgcac cttgacctaa tatatacatt caataaataa 12900 ttccaatagt tttctctcga aacaatctaa taatggcggt atacaaactg atacacgaaa 12960 aaaagtaagg tatttcgggg attatcgttt atgaagcagg ttcctctaag aagaatgtga 13020 taccgccaag ttctttgggt ttcaagacag taactattac tacccaggag cttattaatt 13080 tcaaaatagt atagcagggt atctaatcct attttaaccc tatctcttac gggcttcaat 13140 gttaaacgaa atgctctatt ctacacaaat attaaatttc acttttttat ttttaaaata 13200 acacatcaat caataaacaa tcaccttacc ccacacctaa aacctcctct tatttaatca 13260 gtctaaccgc ggctgctggc acaagtttag cctcaattaa aaagttctct agttcaagct 13320 atcgcccatg tcccaaatct ttacgctgag atataataac cctaatttaa taaataacga 13380 agtttaagca cctacttaca tacgcaacta cctaacaaag gaaattatag ccagaatcaa 13440 actaatatat tatattaata atgggggggc tgccataatt aaaaacaatc aataataatt 13500 aaggtataca aatttaacta cttataacaa acaaatattt accgctgtaa aaaacaaccc 13560 aatctaaaaa aagggccaaa ctaatcccat ttcccccttc ttttccattt acgaccacct 13620 tttatcataa attaacttct ctgttgaaaa cgtatatttt taccccctca ctctaacttt 13680 aaccactgta ctaattttta ttttttatcc aaaaaagttg tgttgatatt ataattcttt 13740 tcgattttaa taatagtgat atgagactaa tttgttagtc tcatctcaca taaattaatt 13800 gtatacaatt aataargaat taatagttag gtaattagag caagatttgg aaacttttat 13860 aaattgagaa ataaggacat aaagcaagtg taagttttta tcgttaaaga gagattacac 13920 tatatgatga gaatataagg acaaaaaaga tcttataaat taagctatgg ggacaaaaaa 13980 gatcttataa attaagctat ggagacaaaa aagaccttat aaattaagct atgaaggaca 14040 aaaaagggat tataaattaa gctataggga cataaagcaa gtgtaagttc ttatcgttaa 14100 agagagatta cactatatga taagaaccct aacgactagg aagattttat aattaaagaa 14160 atgaagccat aaaacaagtg aaagttctta tcgttaaaga ctgatcacaa tatatactaa 14220 gaatataagg acaaaaaaga ttttataaac tgagctataa gggacaaaaa agatattata 14280 aattaagcta taaggacata aagcaagtgt aagtttttat cgttaaagag agattacact 14340 atatgatgag aatataagga caaaaaaggt tttataaatt aagatataga gacaaaaaag 14400 attttataaa ttaagctata aaggacaaaa aagggattat aaattaagct atggggacat 14460 aaagcaagtg taagttctta tcgctaaaga gagattacac tatatgataa gaaccctaac 14520 gaccaggaag gctttataat taaagaaatg aagccataaa acaagtgaaa gttcttatcg 14580 ttaaagactg attagaatat aggctaagaa taacccatca agttaattaa ataattataa 14640 ttgaaggtta tatatattaa attaaatgtc tacgatataa gtagtaaata gaccctttag 14700 gaaaattact tttattccgg aggaagtgta attttctgtt ttaaagggtc tatttactta 14760 tacaattcat attttaatta tactatacgt gtaatattaa agaatattta attttacaga 14820 aagggtatag atatataaac taaactttaa tattaaatat ttaattcaga cttaaataga 14880 tgtgtaaaat caatcaaaga gtataaatcg ataaatgtgt taggtcatta cttaaatatt 14940 aatcgttccc tttctagaat tcctttatgt ttcccattat gggaaacgga attctacctt 15000 taaagggaac tctaattcta gactaaaata actatttaca gagaattctg taaatagata 15060 ttaatctaaa ttttttataa ttacttaacc ttatataagc tatttcaaat taaagcttat 15120 aaatcgagaa caagattctt tatacacttt aaataattat aataaatcac gtttacgtgt 15180 ttgaaagata aaacactatc aacttctata aataactata aaaattagca attaattaaa 15240 aaaaaaatca tacatatatt gtatgtctct gacccccaca gaaaaaactc cgttttacta 15300 tgaatggtag tgtgcttgat aaaaagatcg ctttgataga gcggaatatg ggagatacct 15360 cctcactatt gaccatctta tcggaacctt ataatatgtg agttaagagc ttgccgtccc 15420 tgacgataaa atctaacgta attattcctt agatcaacta aaattggtct accataatta 15480 caaaaacccc tgggccacct cccagcaacc aatgtaatgt gagctaaaac tcaccgatta 15540 atgaataaat taacttaaaa ccccccccgt ggttaaacac gcaatccgaa aaataaagat 15600 ttgccgtgga aatcacaccc tggaacctta taatatgtga gttaagagct tgccgtccct 15660 gacgatttaa gctaactgta ctcttcccta aggcaactaa aattgccgtc cggaataaaa 15720 cctttagcta aatcccagca accaatgtag gtgagctaaa aatcaccgat tggtgatcaa 15780 attagcccac aataaccact taaagcaaat ccataaactt actgtaatag tcaacccaag 15840 caaatcacca aatcaataaa ttagttttaa cggcttacaa aacccaattt ttcactccga 15900 ttgactcaaa ctctgtataa aacaccttta acttacttaa taataaacgg ccttagccct 15960 gtcctatcaa tagctggcaa catagttaaa aaccttaggg gaccaaactt aacaataaat 16020 cttgaccctg ccattatgaa ttatgggatt ccaccatctc cttaaagatc aaaacttcac 16080 gtgctaaaca ccaaaacata aattacctgg ccaactaggc ctacgtgctg aaagataagc 16140 taaacttaag cttacgggtt cataccccgc ctatgaaatt attattctcc ttcaaatttt 16200 ttttctaaac ccagcccgta tcctcttcct aacaactctc acattagggg ccctgcttgc 16260 agccagaaga acctcttgat taaccgcctg gtttggatta gagttaaacc ttctttcatt 16320 catcccgcta atcgcgtcta cctctaacat ctactcctct gagagagcct taaaatattt 16380 cctaattcaa gcgctaggct ctgccttaat cttagctagg gcccctggaa ttttattgtt 16440 aaaaaattta actttaaccc caattatttt ggcgctttta attaaaatag gagccgcgcc 16500 cttccacttt tgatttccct ctgtaataca aggaatccaa tgaaaccaag cccttatttt 16560 aataacaatt caaaaaatag ccccattatt tgtattaacc tatgcccttt ccaggggaag 16620 aataatgccc tactttatcg tcaaaatatc ttctatcctc tcatcgattg ttggtagatt 16680 ggggggttta aaccaaacgc tccttcgtaa aattatagct tactcctcca ttaaccattt 16740 agcttggata ttagccgctc tgtctttcca aaaatcctta ttaacgcatt acttcgcagt 16800 ttatgttatt gtagtagcct cagttacctt tatttttata tcctaccaaa tttttcattt 16860 taaccaaata tttcaaattg ataattcaaa cacacttgta aaagtagggt tattttccac 16920 tttattctca ataggaggcc tgcctccctt tctaggattt atccctaaat taatagtagt 16980 gcaaggctta gctttgacag gacaaacact ctggctagct ttcctacttt taacagcagt 17040 ggtaacacta attttctacg tccgactcct tttaatagga atagttctaa cagccgtaaa 17100 accccgccct actctcacta aaaaagacta cctacccctg ctaattttaa cagctctcaa 17160 cctaactcct cttatcgccc ctttatcaat cttcatgcct ttttagggct ttaagttaaa 17220 aaaactacca gccttcaaag cttgcaacga ggatgttgcc cctcaggccc ttaagcttag 17280 gttaaaactc cttcagaatt gcagtctggt atgcacattt acactactaa gccgtcagag 17340 aaatataaat ttcgtctaca gatttacagt ctatcgccta accctcagcc acctaacac 17399 <210> 2 <211> 48 <212> DNA <213> Unknown <220> <223> Lebbeus Groenlandicus <400> 2 agagtaagca actaaaattt cctgctcaat aataacgaca ctgttaga 48 <210> 3 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> 5' PCR primer <400> 3 cccgtttgcc attttccctc 20 <210> 4 <211> 23 <212> DNA <213> Artificial Sequence <220> <223> 3' PCR primer <400> 4 agtgtcgtta ttattgagca gga 23 <210> 5 <211> 244 <212> DNA <213> Artificial Sequence <220> <223> PCR band sequence <400> 5 cccgtttgcc attttccctc cgattttttt tgattgctgt tattttctta atttttgatg 60 tagagatcac acttctctta cccttagcct caatttataa tacgagtaga atcttctctt 120 gaacagttac aggaatattt tttcttatta ttttactagc ggggctttac cacgaatgaa 180 accaaggagc ccttaattga aaagagtaag caactaaaat ttcctgctca ataataacga 240 cact 244 <110> Genome Research Foundation <120> Genetic Marker Composition for Discrimination of Lebbeus Groenlandicus Species Originated Mitochondria Insertion Markers and Diagnosing Method using the Same <130> PN190065AN <160> 5 <170> KoPatentIn 3.0 <210> 1 <211> 17399 <212> DNA <213> Unknown <220> <223> Lebbeus Groenlandicus <400> 1 tagataacgt cacggtgatt gttttcaaca aatcacaaag atattggcac tttatatttt 60 atttttgggg cttgagcggg tatagtaggt accgccttaa ggcttctaat ccgagcagaa 120 ttaggacaac ccggaagtct cattggaaac gaccaaattt ataatgtaat tgtcacagca 180 catgccttcg ttataatttt ctttatagtt atacccatta taatcggagg gtttggtaat 240 tggttagttc cccttatatt aggagctcct gatatggcct tcccccgtat gaacaacata 300 agattctggc ttcttccacc ttctttaact ttacttctat caaggggaat ggttgaaagg 360 ggagttggaa caggatgaac tgtctaccct cctttggcgg caggtattgc ccatgccggt 420 gcttctgtag acatggggat tttctcacta cacttggcgg gggtttcttc aatcttagga 480 gcagttaatt tcataacaac agtcattaat atacgatcta ccggaatgac aatagatcgc 540 atgcctttat ttgtttggtc agtattctta acagcaatct tattgcttct ctcactacca 600 gttcttgcag gagcaattac aatactcctt acagaccgaa atttaaacac ctctttcttt 660 gaccctgctg gaggagggga ccctatcctt taccaacatt tattttggtt cttcggccac 720 ccagaagttt atatcttaat cctacctgcc tttggcatga tttcccatat tattagacag 780 gagtcaggga aaaaagaaac attcggcact ctaggtataa tttatgctat aatagcaatt 840 ggcatcctag gttttgttgt atgggctcat catatattca cagtaggaat ggatgttgac 900 acccgtgctt attttacatc tgcaactatg attattgccg ttccaacagg aattaaaatc 960 ttcagttggt taggaactct acatgggacc caattcacct atagcccatc ccttctatgg 1020 gcgcttgggt ttgtgttctt attcaccgta ggaggtttaa ctggggttgt tttagctaac 1080 tcctcattag atatcatcct tcacgatact tattatgtgg tggcccattt tcactatgtt 1140 ctctcaatag gcgctgtttt tggtattttt gctggtattg cacattgatt ccccttgttc 1200 acaggaatca caataaaccc taagtggctc aaaattcact tcataacaat atttattggg 1260 gtaaatatta cctttttccc ccaacacttt ttaggactga atggaatacc tcgacgttac 1320 tcagactacc ctgacgctta tatcacatga aatgtagtct cctctattgg gtcaaccatt 1380 tccctattag cagttcttgg ctttgttata attgtgtgag aggccttcgt tagtctacga 1440 ccagtaatat tcactcttgc ccttccaact tctattgaat gacaacaaaa ccttccaccg 1500 gccgaccata gttttataga aatcccaata attgcaaaag gatatctagg gtggcagatc 1560 agtgccctga gtttaagcct caactaggta attatttatt acccctggaa aatggcaaca 1620 tgatccgcac taggcttcca agatagagtg tctcctttaa tggaacaatt aattttcttt 1680 cacgaccacg ctatattagt gttaatttta attactacct tagtagggta tataataggc 1740 tctttatttt ttaactctct tacaaaccgc taccttttag agaatcaaac aatcgaaatt 1800 atttgaacaa ttctacccgc ttttatttta atttttattg ccctaccgtc cctgcgccta 1860 ctttaccttt tagatgaagt aaatacccca agggtaacct tgaaagccat cggccaccaa 1920 tgatattgaa ggtatgaata ctctgatttc cttcaagtag agtttgacgc ctatatagtt 1980 ccttcggcag acttaccaga ctcaggattc cggcttttag atgtagacaa ccgaaccgtc 2040 ttaccaataa acacccaaat ccgaaccctt atctctgcag cagatgtaat tcactcctga 2100 acagtacctg cattaggggt aaaagctgac gcgatccctg gccgactaaa ccaaatcaga 2160 ttttacataa accgggcggg gttatttttt ggtcaatgtt ctgaaatttg cggcgcaaat 2220 cacagattta tacctattgt tattgaaaga gtttcaatta atgctttctt agattgagtt 2280 gtagcaacta gagacgacgc cttatcagat gactgaagtg taagttcagg tcttttaacc 2340 ctgctatagt agaaacaact acttctgata accttaaaat tagttaaata ataacatagg 2400 cttgtcaagc ctaaattatc aaactttgat attttaaaca ctaatgcccc aaatagcccc 2460 ccttctttgg ttacctttat ttattttttt ctctgctatc tttttaatat ttactgcttt 2520 taactactct attaaaaccc caattaaaat ttctaatgta tcaagaacaa ccttaagcca 2580 caaattaacc tggaaatgat aactaattta ttttctagtt ttgaccctat gtcaagagtt 2640 ttcaacctct cacttaactg actctctgct cttttaggac taaggtttct accttattta 2700 tactgggcta tacaaacccg ctgatcccta ctgtgggcta ataccactat tgcaatccac 2760 aaagaattta aagttttatt aggcccgact gactcagggg cctctatctt atttgttagt 2820 ttatttagct ttatcgtatt taataatttt ttaggcttac taccttatgt tttcacaaga 2880 tctagccacc tcaccataac actagctctt gcccttcctt tatggttatc ttttataacc 2940 tacggaatta ttgtacacac ccaacatata ttagcccact tagtcccctc tgggaccccg 3000 ggcgccttaa taccttttat agttttaatt gaaacagtaa gtattataat ccgcccatga 3060 accctagccg tgcgattagc cgctaatata atcgcaggac acctcttact aaccctctta 3120 ggaaacactg gaacctctct ttcctttaca ctcctatccg tccttatttt agcccaaatt 3180 ctccttctaa tcttggaagc agccgttgct gttattcaat cctatgtgtt tgctgttctt 3240 aggactctct acgccagaga agttaactaa tgtcaacaca cggacaccac acataccact 3300 tagtagatat aagcccttga ccccttacag ggtctattag ggccataata ttaacaactg 3360 gattagttaa atgatttcac caatttaaca tagacctcct tattttaggg tttttagcca 3420 cattattaac aataattcaa tgatgacgcg atatcacacg agagggtacc taccaaggcc 3480 ttcacacaaa ccgtgtggtt ataggattac aatggggtat aatcttattt atcgcctctg 3540 aagtcttgtt tttcttctcc tttttttggg ccttcttcca tagaagctta gcccctacct 3600 cagagttggg gaattgctgg ccccctattg gaattcaacc ttttgacccc ttccaaattc 3660 cccttctaaa tacagccatt cttctagcct cgggagctac tgttacctgg gcccatcacg 3720 cccttctaga atcaaatcac acacaagccc tccaaaggtt agccttaaca gtaattctag 3780 gaatttattt ttcagcactt caagccgtag aatatattga ggctcccttc tctattgcag 3840 attctgttta tggagcaacc ttttttgtag ccacagggtt ccatgggtta cacgtgttaa 3900 ttggatcttc ttttttatta gtttgcctaa tccggatgtt tatgtgccat ttctcagaaa 3960 cccaccactt tggatttgaa gccgccgcat gatactggca ctttgttgat gtagtatgac 4020 tgttcttata tatttccatt tactgatgag gtggttaaaa agaaaatatt tttttagtat 4080 aattagtatt attgacttcc aatcaatagg cctggggttc ccagaaaaaa taattttttt 4140 acttataact ataactttaa tcatccttat attagctcta gtagtaataa taatttcctc 4200 tctcctctct aaaaaaataa ttacagaccg agaaaaaaac tcgccgtttg agtgtggatt 4260 tgacccgaaa ggttccgccc gtttgccatt ttccctccga ttttttttga ttgctgttat 4320 tttcttaatt tttgatgtag agatcacact tctcttaccc ttagcctcaa tttataatac 4380 gagtagaatc ttctcttgaa cagttacagg aatatttttt cttattattt tactagcggg 4440 gctttaccac gaatgaaacc aaggagccct taattgaaaa gagtaagcaa ctaaaatttc 4500 ctgctcaata ataacgacac tgttagaagc tatagtcaac aatgattcct gatttgcaat 4560 taggaggtgc tctattgagc tggcttcaag ccaagaagcg aacgtcgctt ttaggttcga 4620 tctaaactcc ggaggtcctt ctcccttggc tattaattaa agccaaaaag cggcctatca 4680 ctgttaatga taaaattgaa agcgtctttc taattaaaga gaaatgtaaa tgctacaaga 4740 aaaggtttct aaccttagct tttgcggcct aagccccgct ctttctccgt cattatagtg 4800 taaataacac actatacttt cattgtagag ataaagggac tccttttaaa gatacctagg 4860 ggcagaatgc cacttctaca gcttcaatgt aacgcccttt tattaaacta cccaagtagg 4920 acccttactt atagaaaact atccttctat aaaaaccatt aaagcaacta accatataac 4980 taaagaaatc atataaattt taaccctatt atcctgagct acctgcaaat aattagaaga 5040 tttaattaaa gttgaataag ccccctgacc accataaaac tcccttcacc ctatatcccc 5100 tacccccgaa taaaacttac caaccttcaa aatacttaaa ctaacccccc gtgtagaaat 5160 taagggtaaa aaccatatag accccctaaa tacaactaaa ctataataac gcagagattt 5220 taaagaataa ttcaccctta taatatttaa taaataaccc aataaagctc cagcccctct 5280 cactaataaa gctaataatt ttatactcct tggcaagcaa attatataag gggcgggaaa 5340 aataagtcaa gctaaagccg cgccgccaaa aaccgagcct cctcctaata ataatattgg 5400 ccaagttata acgggattgt cgtccctcac ccctctttcc gcactaagat taaaatctct 5460 cactaaccta taaaaaacca aacgaaaagt ataacacact gttaaaccag tggccactac 5520 taaaagccaa aagcaaacct cgtttaaggg agatgaaaag gcgacctcta aaattaaatc 5580 cttagaataa aaccctgcta aaaaaggtgt tccacataga gctaagttag caagattcac 5640 ccttgctact ctaagcggta taaagctaac agtacaccct atgacacgaa tatcttggta 5700 atctccaaca ctatggataa tagaacctgc acatataaat aaaagggcct taaagagagc 5760 atgagctaac aaatgaaaaa atgccaactc ggcccatcct atagctaaaa ttgttattat 5820 aactcctaat tgactaagtg tcgacaaagc aataattttt ttaagatccg tttcaaaatt 5880 agcacctaat ccagccataa atatagttaa cctagctaat aataggagac aactttgctc 5940 tgaagttccc tctaacgcag gactaaaccg aattaaaagg taaacccccg ccgtaacaag 6000 agtagaagag tgaactaatg ctgaaactgg agttggggca gctattgccg caggaagtca 6060 cgctgaaaaa ggaatttgag cccttttagt tatagcagct actacaataa aagctactaa 6120 ccccaattgg gcccccatcg cttccctccc aacataaaaa ataaaatttc aacccccaag 6180 actaaatatt aatgcaatac taagtaggat acaaacatct cccacccgat tggaaagtgc 6240 agttaacata cccgcgttag cagacttttc attttgataa tagataacca gtgcataaga 6300 aacaagccct aatccatctc agcccaaaag aatcctaatt atattaggac taataatcaa 6360 caaccctatt gataaaacaa aacctaaaac caagtatata aaacgattaa tattaggatc 6420 tctagccata taactccccc tataaaataa aactatagaa gagataaacc tcacaaaagc 6480 taaaaatatt atagaaaccc aatcaataat taaccttata cccaaataag acgaatttaa 6540 agttacaatt tctcactcaa taaagaaaga attgccggat aaaagcaaaa aaagggaaac 6600 ccttaagccc cttaaagcta ctatagctag gaaaactatt ctaataacat ttatttttaa 6660 accccataac actgttcaaa atactttatc catatatctt tggccccaca aaccaacatt 6720 tttattaaac tatttaaact aaattaaatt taaaaccaat cttcttttta aaattaatag 6780 atttaagggt agtcaatgaa gcaccaaaat taaaaactca cgcaccttac cagaacaaca 6840 cgaaaataaa gaattaacaa acttgccatg ttggcttatt gaatatatat ataaagtgta 6900 ggccgccctg aaaaaagata aagctgctac ccttaccaaa gcaaacttag atcaacaacc 6960 tactcttata ataagtctaa tctcacctaa aagattaagg gaaggagggg ctgccatatt 7020 acaagccctt aaaacaaatc accataaagc catcctaggt ataaaactaa gcaagccctt 7080 cctaatgaaa aggcttcgac tcccaatccg ttcataagct atattagcaa tacaaaaaag 7140 gccagaagaa caaagaccgt gcccaactat aacagaaact gctcctccta acccccatca 7200 cctaaacaat ataaggccac acaacactaa acctatgtga gcaacagagg aataagcaat 7260 taaagattta acatccgcct ggcgcatgca aattaaacta acaattgcac cccctgtggc 7320 accaaatcta atccaaactc aagtaaatct taaagactgt tctttaaata aaggcagcac 7380 ccgtaaaagc ccataacccc ctaactttaa taaaacacct gctaaaatca ttgaccccgc 7440 tacgggagct tctacatgag ccttaggcaa ccataaatga actataaaaa caggaagttt 7500 aacaatgaaa gcaaagaccg aacaaaaata tcaaattaac cttgtagaag ttgaagaggt 7560 taacccgtct accagcccaa taaccaaagt tcctccttgg cctttaaacc taagtaaaga 7620 aactaataag ggtagtgagg caaatagtgt ataaaataat atatacaccc ccgcttgaag 7680 acggtcgggt tggtaccccc aacctaaaat taaaataaaa gtaggaatta aagacctctc 7740 aaaacaaaca taaaataata aataatccat gcaagaaaat gttaaaacaa gacttaataa 7800 caaaagaaca tttaccttta aaaacaacct aaaatagttt cctaagtcat aaatcttctg 7860 tctccttcca actacaagag cggccaccca aaaacttaac aaaattaaga catacctaat 7920 cgagtcaatt ccaaatataa cccctaagcc cgcaatgtga gagccaactc ctgcaaataa 7980 actaaataaa accctaacta aaagcaacga acaaaaaaga gtagttcact ccctacaaat 8040 tataagtatc gataatacaa aaaaaacaaa ctttaacatt gaagtgctct aaaactatta 8100 aaattatcat tcccgtgtct gcgaaccact gaaacaagca aagctaaacc tagtgcccct 8160 tcgcaagccg ctaaagttaa aaaaaataaa acaaaaaaat tatctcctcc taaagtaaca 8220 atacttaaac ttataaccca aaaaactcta agtataataa actcaagcct taataaagaa 8280 cttaataaat gtttacgaac cctgacaaaa gaacccactc cacacaataa tataacaact 8340 ggaatggtgt attgaaataa aagaactaac attagcctta atagtttata taaaactccg 8400 gtcttgtaaa ccgaaaaaga aattattttt cttaaagcat cagaggagag aatgcccttc 8460 ccatctttag tctccaaaac taatattcta attaaactat cgccctgctc tgaaatttct 8520 cttacactta acataatatc tttgatctta accacctctc ttattttttc acaaataacg 8580 cagccccttt ccataggatt aataattgtg gttcaaacca tcttaattgc atttgttgcc 8640 ggagttggaa gtaactctac ttgattctca tatatcctat tcctagtttt cttaggagcg 8700 atgctcgtgt tgttcctcta tgttgcctcc ttagccccaa atgaagcctt tccaatctca 8760 tctactataa ttgcaatttt attaatcgga attctaagcc ccctcccact ttttctctta 8820 gatcaaatag ccgtcccact taaaataaca attgaaggaa cttcttttag agcagaacaa 8880 attataattt cagccaaata taaactaggg ctaatatata gcttaccttc tataaaccta 8940 acgatatata tcatcatata tttactacta acacttattg ttgtagtaaa aattacaaac 9000 accttttttg ggccacttcg tttaacctaa tgacaatacc cttacgtaaa tcccatcccc 9060 tcttcagaat tgctaacgga gccttagtag acctgccgac gccggcaaat atctcaatcc 9120 tttgaaactt tggatccctc ttagggctat gtttaatcac ccaaatcgcc acggggcttt 9180 tccttgctat acattacaca gcagatatta gactagcttt ttcaagtgtt gctcatattt 9240 gccgagacgt aaattatgga tgattacttc gaactttaca cgccaatgga gggtccttct 9300 tcttcatttg cctttttata cacattgggc gaggtattta ttatggctca tttatgttca 9360 tacatacttg aatagtcggt gtcgtaatcc tattcttaac tataggaact gcgttccttg 9420 gatatgtgtt accttgagga caaatatcct tctgaggagc aacagttatt actaacttag 9480 cctcagccat cccttatatc ggaactaatt tagtccagtg aatctgaggg gggtttgcag 9540 ttgataatgc cactcttaca cgctttttta cttttcactt tttattccct tttatagttg 9600 ctgcagcaac tatagtccat attctattcc tacaccaaac aggatctaat aacccacttg 9660 gaatttctag ccaagtagat aaaattccct tccaccctta cttctcgtat aaagatattg 9720 taggttttat tgtaataatc gcaggacttg ttattttaac acttttaaac ccttacctat 9780 taggagatcc cgataacttt atccctgcca atcctttagt aacaccggcc catatccaac 9840 cagaatgata ctttttattt gcttatgcca tcctacgatc catccccaat aaattaggag 9900 gagttattgc cttagtgctt tctgttgcta tcttgtttat ccttcctttt acccacaagg 9960 caaaattccg aagtcttgca ttttaccctt taaaccaatt cttattctga tccatagtag 10020 ttattgttat tttactaacc tgaattggag cccgacctgt tgaagacccc tatgttttaa 10080 ctgggcaaat tctaaccgtt ttatactttg cctattatat tgtcaaccct ctcagattaa 10140 ttttatggga taaaatacta gattgagaag ttaactttat ggaaagttta tgctttgaaa 10200 gcatactaaa agagttcaat tcccttactt cttccctaat tctaacttta ttacaaagtt 10260 atattaatat cacctccaat aaaaccttta ttcccatata aaatacacaa aaatttaagg 10320 ctacaggcaa aaaccttttt caagccaaat atattaactt atcataacga aagcgcggta 10380 gcgttccacg cacccataca aaactaaacg caacaaaaag ggcttttaaa taaaaaacga 10440 accttattaa acttccccct ataaaaataa cactaaaaag aacccttata aaaagaatac 10500 tagcatactc tgctataaaa ataagagcaa agccgcctgc cctgtactca gtattaaaac 10560 cagaaactaa ctctgattca ccttctgcaa aatcaaaagg agtccgatta gtctcagcta 10620 aacaagatgc aaatcaaaca agagccaagg ggcccataaa aactctgaac caaagatacc 10680 gctgataatc tctaaacaaa ctcagcctaa acccacccac taaaaataaa gtacccaata 10740 aaattaaagc caaccttacc tcataagaaa tagtttgagc tacagcacgt aaacacccaa 10800 gcaaggcata tttagagtta gaggaccaac ccgctcctat tgtagtgtac actcctaaac 10860 tagtacaaca taaaaaaaac aaaaccctta tcttaaaact taacaaacca aactcatagg 10920 gcattctaca ccaaactaat aaagctacaa atagcctaaa aacaggagat acataataag 10980 gaataaaatt agatattgta gggagagttt gctccttagt gaataatttt actgcgtctg 11040 aaaaaggctg aagaatccct ataaacccta ctttatttgg ccctttccgg atttgaatat 11100 aacctaaaat ttttcgctca agaagagtta aaaaagcgac tgccaccaac acaaaaataa 11160 ctaataaaat aaccctaact agcttagata actctataat aaactttaca aaagtttgtt 11220 atttatagaa cttgcctata tatttaggtc ctaagcctaa cgcactactc tgccaaaata 11280 acaaaattac tattcatcaa aatctaacag atttgctggc ccttttgatc ctttcgtact 11340 aaaaagggct tcttttacct gagagataga aaccaacctg gctcacaccg gtttgaactc 11400 aaatcatgta aagttttaat ggtcgaacag accaactaac taagctgcta cacttaaaag 11460 atactttaat tcaacatcga ggtcgcaact aatttcatcg ataggaactc tcagaaaaaa 11520 ttacgctgtt atccctaaag taacttaatc ttttaatctt tattaaagga tcaactaact 11580 aaataaaact attcctttca cttacagtta ttaaaaatta tataatagtc gccccaacct 11640 aacaataata catctcactc aatttaaaca aaaatttatg aagcagaaat aaattgtaaa 11700 gttttatagg gtcttatcgt cccctcagaa tatttaagcc ttttcactta aaagtaaaat 11760 tcaattttta aggaggagac agcttccttc tcgtgcagcc attcattcca gcctccaatt 11820 aagagactat tgattatgct accttcgcac ggtcagaata ccgcggccct ttagcacaca 11880 gccagtgggc agactaaatt gtttatataa accaacaaaa atgtttttga taaacagccg 11940 gaagtctaat ttgccgagtt aattctcctt aacaaaaata tattataatt taatcaaatt 12000 ttaattccat aaaacacaat aaacactcta ctaatacaac cactttaact atatttttta 12060 tattaaaaca cactttctct taacttaatt caaacaaata aaaatatata tttattcacc 12120 acattgatta taacaccctc taaaattagc taattttaag cctattccaa tgaaaatata 12180 acttatttaa ccttaaacta aactaactaa cgagctcatg ccccctaaaa tctcagccaa 12240 cctaactaac aattgacgct aaattaaatt tatttcagaa aaaattagat atagaaagac 12300 gactagcata tcactcctaa tctttaattt ctaatacctt taccacggta attagtttta 12360 aacattagct cctttccctt cgaaaataaa taaaatttta tagccaaata ggaagaccct 12420 gatacaaaag gtacaaatat ttctttttat taattcacaa agttccccta cagtactttt 12480 aacctttaac caacgacact aatttcaggc gacttactat taacatatta ttcccattac 12540 tctgaccaat ataacaattt aaccttatta atcaattatt tatcctttta gagcacgtcc 12600 ttattagacg atcacttcat tgtaagtgaa gcactttatt agctatcctc tatataaaat 12660 tccaggggcc ccttccggca cccctactat gttacgactt atctcatttt aagatgagag 12720 cgacgggcga tgtgtacata tcacagagct aaaatcaaat taccttaata aaataatatt 12780 acaattaaat ccaattttta aaagtatttc acccttttag ccaataactt aattaactgt 12840 aacccactta cactttttta taagctgcac cttgacctaa tatatacatt caataaataa 12900 ttccaatagt tttctctcga aacaatctaa taatggcggt atacaaactg atacacgaaa 12960 aaaagtaagg tatttcgggg attatcgttt atgaagcagg ttcctctaag aagaatgtga 13020 taccgccaag ttctttgggt ttcaagacag taactattac tacccaggag cttattaatt 13080 tcaaaatagt atagcagggt atctaatcct attttaaccc tatctcttac gggcttcaat 13140 gttaaacgaa atgctctatt ctacacaaat attaaatttc acttttttat ttttaaaata 13200 acacatcaat caataaacaa tcaccttacc ccacacctaa aacctcctct tatttaatca 13260 gtctaaccgc ggctgctggc acaagtttag cctcaattaa aaagttctct agttcaagct 13320 atcgcccatg tcccaaatct ttacgctgag atataataac cctaatttaa taaataacga 13380 agtttaagca cctacttaca tacgcaacta cctaacaaag gaaattatag ccagaatcaa 13440 actaatatat tatattaata atgggggggc tgccataatt aaaaacaatc aataataatt 13500 aaggtataca aatttaacta cttataacaa acaaatattt accgctgtaa aaaacaaccc 13560 aatctaaaaa aagggccaaa ctaatcccat ttcccccttc ttttccattt acgaccacct 13620 tttatcataa attaacttct ctgttgaaaa cgtatatttt taccccctca ctctaacttt 13680 aaccactgta ctaattttta ttttttatcc aaaaaagttg tgttgatatt ataattcttt 13740 tcgattttaa taatagtgat atgagactaa tttgttagtc tcatctcaca taaattaatt 13800 gtatacaatt aataargaat taatagttag gtaattagag caagatttgg aaacttttat 13860 aaattgagaa ataaggacat aaagcaagtg taagttttta tcgttaaaga gagattacac 13920 tatatgatga gaatataagg acaaaaaaga tcttataaat taagctatgg ggacaaaaaa 13980 gatcttataa attaagctat ggagacaaaa aagaccttat aaattaagct atgaaggaca 14040 aaaaagggat tataaattaa gctataggga cataaagcaa gtgtaagttc ttatcgttaa 14100 agagagatta cactatatga taagaaccct aacgactagg aagattttat aattaaagaa 14160 atgaagccat aaaacaagtg aaagttctta tcgttaaaga ctgatcacaa tatatactaa 14220 gaatataagg acaaaaaaga ttttataaac tgagctataa gggacaaaaa agatattata 14280 aattaagcta taaggacata aagcaagtgt aagtttttat cgttaaagag agattacact 14340 atatgatgag aatataagga caaaaaaggt tttataaatt aagatataga gacaaaaaag 14400 attttataaa ttaagctata aaggacaaaa aagggattat aaattaagct atggggacat 14460 aaagcaagtg taagttctta tcgctaaaga gagattacac tatatgataa gaaccctaac 14520 gaccaggaag gctttataat taaagaaatg aagccataaa acaagtgaaa gttcttatcg 14580 ttaaagactg attagaatat aggctaagaa taacccatca agttaattaa ataattataa 14640 ttgaaggtta tatatattaa attaaatgtc tacgatataa gtagtaaata gaccctttag 14700 gaaaattact tttattccgg aggaagtgta attttctgtt ttaaagggtc tatttactta 14760 tacaattcat attttaatta tactatacgt gtaatattaa agaatattta attttacaga 14820 aagggtatag atatataaac taaactttaa tattaaatat ttaattcaga cttaaataga 14880 tgtgtaaaat caatcaaaga gtataaatcg ataaatgtgt taggtcatta cttaaatatt 14940 aatcgttccc tttctagaat tcctttatgt ttcccattat gggaaacgga attctacctt 15000 taaagggaac tctaattcta gactaaaata actatttaca gagaattctg taaatagata 15060 ttaatctaaa ttttttataa ttacttaacc ttatataagc tatttcaaat taaagcttat 15120 aaatcgagaa caagattctt tatacacttt aaataattat aataaatcac gtttacgtgt 15180 ttgaaagata aaacactatc aacttctata aataactata aaaattagca attaattaaa 15240 aaaaaaatca tacatatatt gtatgtctct gacccccaca gaaaaaactc cgttttacta 15300 tgaatggtag tgtgcttgat aaaaagatcg ctttgataga gcggaatatg ggagatacct 15360 cctcactatt gaccatctta tcggaacctt ataatatgtg agttaagagc ttgccgtccc 15420 tgacgataaa atctaacgta attattcctt agatcaacta aaattggtct accataatta 15480 caaaaacccc tgggccacct cccagcaacc aatgtaatgt gagctaaaac tcaccgatta 15540 atgaataaat taacttaaaa ccccccccgt ggttaaacac gcaatccgaa aaataaagat 15600 ttgccgtgga aatcacaccc tggaacctta taatatgtga gttaagagct tgccgtccct 15660 gacgatttaa gctaactgta ctcttcccta aggcaactaa aattgccgtc cggaataaaa 15720 cctttagcta aatcccagca accaatgtag gtgagctaaa aatcaccgat tggtgatcaa 15780 attagcccac aataaccact taaagcaaat ccataaactt actgtaatag tcaacccaag 15840 caaatcacca aatcaataaa ttagttttaa cggcttacaa aacccaattt ttcactccga 15900 ttgactcaaa ctctgtataa aacaccttta acttacttaa taataaacgg ccttagccct 15960 gtcctatcaa tagctggcaa catagttaaa aaccttaggg gaccaaactt aacaataaat 16020 cttgaccctg ccattatgaa ttatgggatt ccaccatctc cttaaagatc aaaacttcac 16080 gtgctaaaca ccaaaacata aattacctgg ccaactaggc ctacgtgctg aaagataagc 16140 taaacttaag cttacgggtt cataccccgc ctatgaaatt attattctcc ttcaaatttt 16200 ttttctaaac ccagcccgta tcctcttcct aacaactctc acattagggg ccctgcttgc 16260 agccagaaga acctcttgat taaccgcctg gtttggatta gagttaaacc ttctttcatt 16320 catcccgcta atcgcgtcta cctctaacat ctactcctct gagagagcct taaaatattt 16380 cctaattcaa gcgctaggct ctgccttaat cttagctagg gcccctggaa ttttattgtt 16440 aaaaaattta actttaaccc caattatttt ggcgctttta attaaaatag gagccgcgcc 16500 cttccacttt tgatttccct ctgtaataca aggaatccaa tgaaaccaag cccttatttt 16560 aataacaatt caaaaaatag ccccattatt tgtattaacc tatgcccttt ccaggggaag 16620 aataatgccc tactttatcg tcaaaatatc ttctatcctc tcatcgattg ttggtagatt 16680 ggggggttta aaccaaacgc tccttcgtaa aattatagct tactcctcca ttaaccattt 16740 agcttggata ttagccgctc tgtctttcca aaaatcctta ttaacgcatt acttcgcagt 16800 ttatgttatt gtagtagcct cagttacctt tatttttata tcctaccaaa tttttcattt 16860 taaccaaata tttcaaattg ataattcaaa cacacttgta aaagtagggt tattttccac 16920 tttattctca ataggaggcc tgcctccctt tctaggattt atccctaaat taatagtagt 16980 gcaaggctta gctttgacag gacaaacact ctggctagct ttcctacttt taacagcagt 17040 ggtaacacta attttctacg tccgactcct tttaatagga atagttctaa cagccgtaaa 17100 accccgccct actctcacta aaaaagacta cctacccctg ctaattttaa cagctctcaa 17160 cctaactcct cttatcgccc ctttatcaat cttcatgcct ttttagggct ttaagttaaa 17220 aaaactacca gccttcaaag cttgcaacga ggatgttgcc cctcaggccc ttaagcttag 17280 gttaaaactc cttcagaatt gcagtctggt atgcacattt acactactaa gccgtcagag 17340 aaatataaat ttcgtctaca gatttacagt ctatcgccta accctcagcc acctaacac 17399 <210> 2 <211> 48 <212> DNA <213> Unknown <220> <223> Lebbeus Groenlandicus <400> 2 agagtaagca actaaaattt cctgctcaat aataacgaca ctgttaga 48 <210> 3 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> 5'PCR primer <400> 3 cccgtttgcc attttccctc 20 <210> 4 <211> 23 <212> DNA <213> Artificial Sequence <220> <223> 3'PCR primer <400> 4 agtgtcgtta ttattgagca gga 23 <210> 5 <211> 244 <212> DNA <213> Artificial Sequence <220> <223> PCR band sequence <400> 5 cccgtttgcc attttccctc cgattttttt tgattgctgt tattttctta atttttgatg 60 tagagatcac acttctctta cccttagcct caatttataa tacgagtaga atcttctctt 120 gaacagttac aggaatattt tttcttatta ttttactagc ggggctttac cacgaatgaa 180 accaaggagc ccttaattga aaagagtaag caactaaaat ttcctgctca ataataacga 240 cact 244

Claims (7)

서열번호 2의 DNA 서열로 구성된 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커 조성물.Prickly pear shrimp consisting of the DNA sequence of SEQ ID NO: 2 ( Lebbeus Groenlandicus ) Gene marker composition for species identification. 제1항에 있어서,
상기 서열번호 2의 DNA 서열은 서열번호 1의 가시배새우(Lebbeus Groenlandicus) 미토콘드리아 전장 유전체 서열 중 NAD3(NADH dehydrogenase subunit 3) 유전자의 4,480번째 염기 아래에 삽입된 것을 특징으로 하는 가시배새우(Lebbeus Groenlandicus) 종 판별용 유전자 마커 조성물.
The method of claim 1,
DNA sequence of SEQ ID NO: 2, SEQ ID NO: 1, prickly pear shrimp (Lebbeus Groenlandicus) mitochondrial full-length genome of SEQ ID NAD3 (NADH dehydrogenase subunit 3) prickly pear shrimp (Lebbeus Groenlandicus, characterized in that the insert under 4480th bases of the gene of ) Genetic marker composition for species identification.
서열번호 2의 DNA 서열 또는 그 단편을 특징적으로 증폭할 수 있는 프라이머 세트를 포함하는 가시배새우(Lebbeus Groenlandicus) 종 판별용 프라이머 세트.A primer set for discriminating species of thorny shrimp ( Lebbeus Groenlandicus ) comprising a primer set capable of characteristically amplifying the DNA sequence of SEQ ID NO: 2 or a fragment thereof. 제3항에 있어서,
상기 서열번호 2의 DNA 서열 또는 그 단편을 특징적으로 증폭할 수 있는 프라이머 세트는 서열번호 3 및 4의 프라이머 세트인 것을 특징으로 하는 가시배새우(Lebbeus Groenlandicus) 종 판별용 프라이머 세트.
The method of claim 3,
The primer set capable of characteristically amplifying the DNA sequence of SEQ ID NO: 2 or a fragment thereof is a primer set of SEQ ID NOs: 3 and 4 ( Lebbeus Groenlandicus ) Species identification primer set.
제3항 또는 제4항의 가시배새우(Lebbeus Groenlandicus) 종 판별용 프라이머 세트를 포함하는 가시배새우(Lebbeus Groenlandicus) 종 판별용 키트.Prickly pear shrimp according to claim 3 or 4 ( Lebbeus Groenlandicus ) Prickly pear shrimp ( Lebbeus Groenlandicus ) species identification kit containing a primer set for species identification. (a) 대상 새우 시료에서 DNA를 분리하는 단계;
(b) 상기 (a) 단계에서 분리된 DNA를 주형으로 하고, 제3항 또는 제4항의 프라이머 세트를 이용하여 표적 서열을 증폭하는 단계; 및
(c) 표적 서열이 증폭되는 경우 가시배새우(Lebbeus Groenlandicus) 종으로 판정하는 단계;를 포함하는 가시배새우(Lebbeus Groenlandicus) 종 판별 방법.
(a) separating DNA from the target shrimp sample;
(b) using the DNA isolated in step (a) as a template, and amplifying the target sequence using the primer set of claim 3 or 4; And
(c) When the target sequence is amplified, Prickly Pear ( Lebbeus Groenlandicus ) the step of determining the species; Prickly pear shrimp ( Lebbeus Groenlandicus ) containing the species determination method.
제6항에 있어서,
상기 표적 서열은 서열번호 2의 DNA 서열로 구성된 것을 특징으로 하는 가시배새우(Lebbeus Groenlandicus) 종 판별 방법.
The method of claim 6,
The target sequence, characterized in that consisting of the DNA sequence of SEQ ID NO: 2 Prickly pear shrimp ( Lebbeus Groenlandicus ) species identification method.
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