KR100250901B1 - Nucleotide sequence of Cymbibium Mozaic Virus, Expressing Vector and Transgenic Plant Thereof - Google Patents

Nucleotide sequence of Cymbibium Mozaic Virus, Expressing Vector and Transgenic Plant Thereof Download PDF

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KR100250901B1
KR100250901B1 KR1019970056294A KR19970056294A KR100250901B1 KR 100250901 B1 KR100250901 B1 KR 100250901B1 KR 1019970056294 A KR1019970056294 A KR 1019970056294A KR 19970056294 A KR19970056294 A KR 19970056294A KR 100250901 B1 KR100250901 B1 KR 100250901B1
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고문경
김병동
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Abstract

PURPOSE: Provided is an expression vector to transform Agrobacterium with genes of Cymbidium mosaic virus (CyMv) and to develop transformed plants resistant against CyMv using the bacterium. CONSTITUTION: An expression vector for transforming Agrobacterium with genes of Cymbidium mosaic virus (CyMv) is characterized by the next steps of: i) cutting pCyMV1 with restriction enzymes Pstl and EcoR1 and treating segments with T4 DNA polymerase to obtain blunt segments; ii) eluting bands containing genes of envelop proteins through electrophoresis; iii) ligating the bands with vector Smal-cut pGEM-7Z(+) and transforming E. coli JM109 with the vector; iv) cutting DNA obtained from the bacteria with BamH1 and PuvII to check the insertion direction of envelop proteins (pCyCPS is in sense direction and pCyCPA in antisense direction); v) cutting pCyCPS with Xbal and eluting bands containing genes of CyMV envelop protein; vi) ligating segments with Xbal-cut pMBPl and transforming E. coli JM109 with the vector; vii) checking the direction of insertion proteins (Clones obtained here are pMBPCPS and pMBPCPA); viii) cutting pMBPCPS and pMBPCPA with HindIII and XbaI (pMBPCPS/J is in sense direction and pMBPCPA/J in antisense direction).

Description

난초식물 모자이크 바이러스의 염기서열, 발현벡터 및 형질전환체 {Nucleotide sequence of Cymbibium Mozaic Virus, Expressing Vector and Transgenic Plant Thereof}Nucleotide sequence of Cymbibium Mozaic Virus, Expressing Vector and Transgenic Plant Thereof}

본 발명은 난초식물(Cymbidium)모자이크 바이러스(CyMV)의 염기서열, 발현벡타 및 그 형질전환체에 관한 것이다.The present invention relates to a nucleotide sequence, an expression vector, and a transformant of an orchid plant (Cymbidium) mosaic virus (CyMV).

단자엽식물중 난초식물은 그 꽃의 화려함과 은은한 향기로 품종개량과 재배면적이 계속적으로 증가하고 있으며 우리나라를 비롯한 온대지역에서는 주로 온실에서 대량재배되고 있다. 그러나 난초는 꽃과 줄기를 관상의 주대상으로 하는 식물로서 한번 병충해 피해를 받으면 상품가치가 저하되어 폐기해야 하는 단점이 있다. 병충해의 피해중에서 난초의 품질을 저하시키는 가장 중요한 것은 모자이크 바이러스병으로 지금까지 약 25종의 난초 바이러스가 알려져 있다. 이중 Cymbidium mosaic virus(CyMV)와 Odontoglossum ring spot virus(ORSV)가 주로 연구되어 왔으며 특히 CyMV에 의한 바이러스병을 세계각국에 널리 분포하고 그 피해도 가장 극심하다.Among the monocotyledonous plants, the variety and cultivation area of orchid plants are steadily increasing due to the flower's splendor and subtle scent. However, orchid is a plant that mainly targets flowers and stems, and once it is damaged by insects, its commodity value decreases and must be discarded. Of the pest damage, the most important deterioration of orchid quality is mosaic virus disease, so far about 25 kinds of orchid viruses are known. Among them, Cymbidium mosaic virus (CyMV) and Odontoglossum ring spot virus (ORSV) have been mainly studied. Especially, the disease caused by CyMV is widely distributed around the world and the damage is the most severe.

따라서 난초에 대한 virus의 감염 및 그 피해도를 감소시켜려는 연구가 다방면으로 이루어져 왔으나 아직은 그 효과가 미미한 상태이며 그 이유는 virus의 감염메카니즘이 불확실하다는 데 있다. 그러나, 바이러스저항성을 가지는 식물을 유전공학적 기법에 의해 생산하기 위해서는 외피단백질 유전자를 식물체에 삽입하는 방법, subgenomic viral nucleic acid인 satellite RNA를 이용하는 방법, 끝으로 antisense RNA를 삽입하여 Viral gene expression을 억제하는 방법을 고려할 수 있다.Therefore, various studies have been conducted to reduce the virus infection and its damage to orchids, but the effect is still insignificant. The reason is that the virus infection mechanism is uncertain. However, in order to produce a virus-resistant plant by genetic engineering techniques, a method of inserting the envelope protein gene into the plant, using satellite RNA, a subgenomic viral nucleic acid, and finally inserting antisense RNA to inhibit Viral gene expression You can consider the method.

따라서 본 발명은 상기 여러 가지 방법 중에서 첫 번째 방법을 도입하기로 하고 CyMV 게놈과 외피단백질의 크기를 결정하고, CyMV RNA로부터 cDNA를 합성한 후 subclone들을 작성하여 CyMV 3'쪽의 염기서열을 결정함을 그 목적으로 한다. 본 발명의 또 다른 목적은 이를 토대로 외피단백질 유전자를 분리하여 식물발현용 벡터에 삽입시킨 후 이를 Agrobacterium에 형질전환시켜 CyMV저항성 형질전환체식물을 개발하기 위한 vector를 제공하는데 있다.Therefore, the present invention decided to introduce the first of the various methods, determine the size of the CyMV genome and envelope proteins, synthesize cDNA from CyMV RNA, and then prepare subclones to determine the base sequence of CyMV 3 '. For that purpose. It is another object of the present invention to provide a vector for developing CyMV resistant transformant plants by separating the envelope protein gene, inserting it into a plant expression vector, and transforming it into Agrobacterium.

이하 본 발명의 구체적인 구성과 작용을 당업자가 용이하게 실시할 수 있도록 상세히 설명한다.Hereinafter will be described in detail so that those skilled in the art can easily implement the specific configuration and operation of the present invention.

도 1은 pCyMV1의 구조를 도시한 모식도.1 is a schematic diagram showing the structure of pCyMV1.

CyMV cDNA는 CyMV RNA로부터 합성되고 EcoRI-Cut pBluescript KS 벡터와 연결되었음을 보이고 있다.CyMV cDNA has been shown to be synthesized from CyMV RNA and linked with EcoRI-Cut pBluescript KS vector.

도 2는 pCyMV1의 제한 효소지도와 염기서열 결정을 위한 모식도.Figure 2 is a schematic diagram for determining the restriction map and nucleotide sequence of pCyMV1.

제한효소중 E:EcoRI, P:PstI, Pv:PvuⅡ M:MspI을 나타낸다.Among the restriction enzymes are E: EcoRI, P: PstI, and Pv: PvuII M: MspI.

도 3은 CyMV의 외피단백질 유전자를 포함하는 cDNA의 염기서열.Figure 3 is a base sequence of cDNA containing the envelope protein gene of CyMV.

네모표시는 개시코돈과 종결코돈을 표시한다.Square marks indicate start codon and end codon.

도 4는 CyMV 외피단백질을 삽입하여 클로닝한 결과 얻은 식물발현용 Vector pCyCPS와 pCyCPA 제조과정 모식도.Figure 4 is a schematic diagram showing the plant expression vector pCyCPS and pCyCPA production process obtained by cloning the CyMV envelope protein.

제한효소기호는 다음과 같다.The restriction enzyme symbol is as follows.

B:BamHI, E:EcoRI, K:KpnI, P:PstI, Pv: PvuⅡ, S:SmaI, X:XbaIB: BamHI, E: EcoRI, K: KpnI, P: PstI, Pv: PvuII, S: SmaI, X: XbaI

도 5는 CyMV외피단백질이 삽입된 식물발현용 벡타 pMBPCPS과 pMBPCPA의 제조모식도Figure 5 is a schematic diagram of the production of plant expression vector beta pMBPCPS and pMBPCPA in which CyMV envelope protein is inserted

A: 제한효소 XbaI으로 절단한 pCyCPS의 구조A: Structure of pCyCPS digested with restriction enzyme XbaI

B: 플라스미드 벡터 pMBPI의 구조B: Structure of the plasmid vector pMBPI

C: 식물발현용 상기 두가지 벡타C: The above two vectors for plant expression

도 6은 식물발현용 벡타 pMBPCPS/J와 pMBPCPA/J의 agarose gel electrophoresis 결과를 보인 사진도.Figure 6 is a photograph showing the results of agarose gel electrophoresis of the plant expression vector pMBPCPS / J and pMBPCPA / J.

Lane M : Lamda HindⅢ size markerLane M: Lamda HindⅢ size marker

Lane I : KpnI+HindⅢ로 절단된 pMBP ILane I: pMBP I cleaved with KpnI + HindIII

Lane 2-3 : KpnI+HindⅢ로 절단된 pCyCPALane 2-3: pCyCPA digested with KpnI + HindIII

Lane 4-5 : KpnILane 4-5: KpnI

도 7a는 식물발현용 벡터 pMBPCPS/L과 pMBPCPA/L의 agarose gel electrophoresis 결과를 보인 사진도.Figure 7a is a photograph showing the results of agarose gel electrophoresis of plant expression vectors pMBPCPS / L and pMBPCPA / L.

Lane M; Lamda HindⅢ size markerLane M; Lamda HindⅢ size marker

Lane 1 : pCyMVI digested with EcoRILane 1: pCyMVI digested with EcoRI

Lane 2 : pMBPI digested with KpnI+HindⅢLane 2: pMBPI digested with KpnI + HindⅢ

Lane 3-4 : pMBPCPS/L digested with KpnI+HindⅢLane 3-4: pMBPCPS / L digested with KpnI + HindⅢ

Lane 5-6 : pMBPCPA/L digested with KpnI+HindⅢLane 5-6: pMBPCPA / L digested with KpnI + HindⅢ

도 7b는 CyMV의 외피단백질 유전자를 probe로 하여 Southern blot을 수행한 결과를 보인 사진도.Figure 7b is a photograph showing the results of performing Southern blot using the envelope protein gene of CyMV as a probe.

Lane M; Lamda HindⅢ size markerLane M; Lamda HindⅢ size marker

Lane 1 : pMBPI digested with KpnI+HindⅢLane 1: pMBPI digested with KpnI + HindⅢ

Lane 2-3 : pMBPCPS/J digested with KpnI+HindⅢLane 2-3: pMBPCPS / J digested with KpnI + HindⅢ

Lane 4-5 : pMBPCPA/J digested with KpnI+HindⅢLane 4-5: pMBPCPA / J digested with KpnI + HindⅢ

Lane 6 : pCyCPS digested with KpnI+HindⅢLane 6: pCyCPS digested with KpnI + HindⅢ

균주(Bacterial strain)Bacterial strain

실험에서 사용된 균주는 E. coli JM109(recAl supE44 endAl hsdR17 gyrA96 relAl thi△ lac-proAB) F'[traD36 proAB+laclalacZ△M15]가 사용되었으며 식물 발현용 벡터 제작을 위해서는 Agrobacterium strains의 하나인 LBA4404를 사용하였다.The strain used in the experiment was E. coli JM109 (recAl supE44 endAl hsdR17 gyrA96 relAl thiΔ lac-proAB) F '[traD36 proAB + lacl a lacZΔM15]. For the production of plant expression vectors, one of the Agrobacterium strains was used. LBA4404 was used.

PlamidPlamid

cDNA cloning과 subcloning을 위해서 pBluscript KS(Stratagene), pGEM-7Z(+)(Promega)를 사용하였으며 식물 발현용 벡터는 pMBP I을 사용하였다.pBluscript KS (Stratagene) and pGEM-7Z (+) (Promega) were used for cDNA cloning and subcloning, and pMBP I was used as a plant expression vector.

바이러스virus

본 실험에 사용한 CyMV particles은 서울대학교 농업생명과학대학 농생물학과 바이러스학 실험실에서 분양받았다.CyMV particles used in this experiment were distributed in the Department of Agricultural Biology and Virology, Seoul National University.

배지(Culture medium)Culture medium

E. coli JM109를 배양하기 위하여 LB배지(1% tryptone, 0.5% yeast extract, 1% NaCl)를 사용하였고 transformant를 선발하기 위해서 ampicillin(50 ㎍/㎖), X-gal(20 ㎎/㎖), IPTG(200 ㎎/㎖)이 포함된 LB배지를 사용하였다. pMBP I은 kanamycin(50 ㎍/㎖)이 포함된 LB 배지에서 배양하였으며, Agrobacterium은 YEP배지(1% peptone, 1% yeast extract, 0.5% NaCl)에서 배양하였으며 transformant를 선발하기 위해서 kanamycin(50 ㎍/㎖)이 포함된 YEP배지를 사용하였다.LB medium (1% tryptone, 0.5% yeast extract, 1% NaCl) was used to culture E. coli JM109, and ampicillin (50 μg / ml), X-gal (20 mg / ml), LB medium containing IPTG (200 mg / ml) was used. pMBP I was cultured in LB medium containing kanamycin (50 μg / ml), Agrobacterium was cultured in YEP medium (1% peptone, 1% yeast extract, 0.5% NaCl), and kanamycin (50 μg / ml) was used to select transformants. YEP medium containing ml) was used.

사용된 시약 및 효소(Reagents, Enzymes)Reagents, Enzymes Used

cDNA synthesis system, Klenow polymerase, T4 DNA polymerase, T4 DNA ligase, T4 DNA kinase 등은 Promega에서 구입하였고, BamHI, EcoRV, HindⅢ, Msp I, PstI, PvuⅡ, SacI, SmaI, XbaI, KpnI들은 BM에서 구입하였다.cDNA synthesis system, Klenow polymerase, T4 DNA polymerase, T4 DNA ligase, T4 DNA kinase were purchased from Promega and BamHI, EcoRV, HindIII, Msp I, PstI, PvuII, SacI, SmaI, XbaI, KpnI were purchased from BM. .

ECL direct nucleic acid labelling and detection system kit, nylon membrane은 Amersham에서, sequencing kit는 USB에서, tryptone, yeast extract, agar는 DIFCO에서 구입하였다. 그 밖의 agarose를 비롯한 시약들은 SIGMA Chemical Co.와 Fluca에서 구입하였다.ECL direct nucleic acid labeling and detection system kits and nylon membranes were purchased from Amersham, sequencing kits from USB, tryptone, yeast extract, and agar from DIFCO. Other reagents, including agarose, were purchased from SIGMA Chemical Co. and Fluca.

이하에서는 CyMV외피단백질의 크기를 결정하고 CyMV cDNA 합성과정을 공정별로 실시예를 들어 설명한다.Hereinafter, the size of the CyMV envelope protein will be determined and the CyMV cDNA synthesis process will be described with examples by process.

제1공정 : CyMV 외피단백질과 유전자의 크기 분석Step 1: CyMV Envelope Protein and Gene Size Analysis

CyMV 외피단백질의 크기 분석Size Analysis of CyMV Envelope Proteins

CyMV particle 12 ㎍을 10% sodium dodecyl sulfate-polyacrylamide gel에서 전기영동하고 Coomassie Brilliant Blue로 염색하여 CyMV 외피단백질의 크기를 분석하였다. SDS-PAGE 결과 본 실험에 사용한 CyMV의 외피단백질의 크기는 약 26kDa이었다.The size of CyMV envelope protein was analyzed by electrophoresis of 12 μg of CyMV particles on 10% sodium dodecyl sulfate-polyacrylamide gel and stained with Coomassie Brilliant Blue. As a result of SDS-PAGE, the envelope protein of CyMV used in this experiment was about 26 kDa.

CyMV RNA정제 및 크기 결정Purification and Sizing of CyMV RNA

CyMV particle 100㎍에 extraction buffer(4M guanidium thiocyanste, 50 mM Tris pH 7.0, 10 mM EDTA, 5 mM sodium citrate 0.1 M β-Mercaptoethanol) 400㎍ 10% sarcosyl 5 ㎕를 넣은 후 65℃에서 5분간 가열하였다. 여기에 같은 부피의 phenol/chloroform/isoamyl alcohol을 넣고 흔들어 준 후 얼음에 10분간 담가 놓은 다음 4℃에서 12,000xg로 10분 동안 원심분리하였다. 수용액 층을 취하여 같은 부피의 chloroform/isoamyl alcohol을 넣고 흔들어 준 후 4℃에서 12,000xg로 10분 동안 원심분리하였다. 수용액 층을 취하여 0.1배 부피의 3M sodium acetate(pH5.2)를 넣고 2.5배 부피의 에탄올을 넣어 잘 섞은 다음 -20℃에서 1시간 보관 후 20분간 12,000xg로 원심분리하여 상층액을 버리고 70% 에탄올로 한 번 씻은 다음 동결건조하였다. 이 pellet을 DEPC가 처리된 증류수에 녹였다. 정제된 RNA를 1% formaldehyde agarose gel에 걸어 CyMV RNA의 크기와 OD360을 측정해 CyMV RNA의 양을 결정한 결과 CyMV genome의 크기는 약 6.2kb였다.5 µl of extraction buffer (4M guanidium thiocyanste, 50 mM Tris pH 7.0, 10 mM EDTA, 5 mM sodium citrate 0.1 M β-Mercaptoethanol) 400µg 10% sarcosyl was added to 100µg of CyMV particles and heated at 65 ° C for 5 minutes. The same volume of phenol / chloroform / isoamyl alcohol was added thereto, shaken, soaked in ice for 10 minutes, and centrifuged at 12,000xg for 10 minutes at 4 ° C. Take an aqueous layer, add the same volume of chloroform / isoamyl alcohol, shake and centrifuge for 10 minutes at 12,000xg at 4 ℃. Take an aqueous layer, add 0.1 times volume of 3M sodium acetate (pH5.2), add 2.5 times volume of ethanol, mix well, store for 1 hour at -20 ℃, centrifuge at 12,000xg for 20 minutes, and discard supernatant. Washed once with ethanol and lyophilized. This pellet was dissolved in distilled water treated with DEPC. Purified RNA was placed on 1% formaldehyde agarose gel to measure CyMV RNA size and OD 360 to determine the amount of CyMV RNA. The size of CyMV genome was about 6.2kb.

제2공정 : CyMV cDNA 합성 및 선발Second Step: CyMV cDNA Synthesis and Selection

CyMV cDNA 합성CyMV cDNA Synthesis

CyMV 합성은 Gubler와 Hoffman(1983)의 방법에 따랐다. First strand 합성은 2㎍의 mRNA를 1㎍의 XbaI primer adaptor와 섞은 후 부피를 15㎕로 맞춘 후 70℃에서 5분간 가열하고 상온으로 식힌 다음, 전체 25㎕ 반응 용액[50 mM Tris-HCI(pH8.3), 50 mM KCl, 10 mM NaCl2, 0.5 mM spermidine, 10 mM DTT, 4 mM sodium pyrophosphate, 25 units of rRNasin, 각 1 mM의 dATP, dCTP, dGTP, dTTP, 30 units of reverse transcriptase]에서 42℃, 60분 동안 반응시켰다.CyMV synthesis was followed by Gubler and Hoffman (1983). First strand synthesis was performed by mixing 2 μg of mRNA with 1 μg of XbaI primer adaptor, adjusting the volume to 15 μl, heating at 70 ° C. for 5 minutes, cooling to room temperature, and then reacting with a total 25 μl reaction solution [50 mM Tris-HCI (pH8). .3), 50 mM KCl, 10 mM NaCl2, 0.5 mM spermidine, 10 mM DTT, 4 mM sodium pyrophosphate, 25 units of rRNasin, 1 mM dATP, dCTP, dGTP, dTTP, 30 units of reverse transcriptase] The reaction was carried out for 60 minutes.

Second strand cDNA 합성은 20㎕ first strand 반응 용액을 포함한 100㎕의 반응액(50 mM Tris-HCl/pH 7.6, 100 mM KCl, 5 mM MgCl2, 50 ㎍/㎕ bovine serum albumin, 5 mM DTT, 8㎍/㎖ RNase H, 230㎍/㎖ E. coli DNA polymerase I)으로 14℃에서 4시간 동안 행하였으며 first strand, second strand 합성에서 각각 5㎍, 10㎍씩을 따로 취해 5-10μCi의 [α-32P]dCTP를 넣고 tracer reaction을 수행한 후 autoradiogram으로 합성 정도를 확인한 결과 0.1-2.3kb의 cDNA가 합성되었다. 합성된 cDNA를 70℃에서 10분간 처리하고 2units의 T4 DNA polymerase를 넣고 37℃에서 20분간 반응시켜 blunt end로 만든 다음 10㎕의 200mM EDTA를 넣고 phenol/chloroform/isoamyl alcohol 처리 후 0.1배 부피의 sodium acetate(pH 5.2)를 넣고 2.5배 부피의 에탄올을 넣어 침전시켰다. 이렇게 합성된 cDNA를 Sephacryl S-400 column을 통해 순수분리하고 cDNA를 정량하여 cDNA 25ng과 EcoRI adaptor 10 pmol을 14℃에서 18시간 동안 ligation하고 70℃로 10분간 불활성시킨 다음 40㎕의 0.1mM ATP, 70mM Tris-HCl(pH7.8), 10mM MgCl2, 5mM DTT, 10units T4 polynucleotide kinase를 처리하였다. Ligation되지 않은 adaptors를 제거하기 위해 Sephacryl S-400 spin column을 수행하였다.Second strand cDNA synthesis was performed using 100 μl of reaction solution (50 mM Tris-HCl / pH 7.6, 100 mM KCl, 5 mM MgCl 2 , 50 μg / μl bovine serum albumin, 5 mM DTT, 8) ㎍ / ㎖ RNase H, 230㎍ / ㎖ E. coli DNA polymerase I) in the row was in the 14 ℃ for 4 hours, first strand, respectively 5㎍, taken separately ssikeul 10㎍ [α- 32 of second strand synthesis from 5-10μCi After inserting P] dCTP and performing a tracer reaction, the degree of synthesis was confirmed by autoradiogram. The synthesized cDNA was treated at 70 ° C. for 10 minutes, 2 units of T4 DNA polymerase was added and reacted at 37 ° C. for 20 minutes to form a blunt end. 10 μl of 200 mM EDTA was added thereto, followed by phenol / chloroform / isoamyl alcohol treatment. Acetate (pH 5.2) was added and 2.5 times ethanol was added to precipitate. The synthesized cDNA was purified through Sephacryl S-400 column and quantitated cDNA was ligation of 25ng of cDNA and 10 pmol of EcoRI adapter for 18 hours at 14 ℃ and inactivated at 70 ℃ for 10 minutes, 40 μl of 0.1 mM ATP, 70 mM Tris-HCl (pH7.8), 10 mM MgCl 2 , 5 mM DTT, and 10 units T4 polynucleotide kinase were treated. Sephacryl S-400 spin columns were performed to remove non-ligation adaptors.

발현벡타 준비Expression vector preparation

발현벡타는 도 1의 모식도와 같이 하여 제작하였다. 즉, CyMV cDNA의 운반체로는 pBluescript KS를 사용하였고 pBluescript KS를 ampicillin(50㎍/㎖)이 포함된 50㎖의 LB배지에서 12시간 동안 배양한 후 원심분리한 다음 배지를 제거하고 alkaline lysis 방법을 이용하여 플라스미드를 추출하였다. Pellet에 ice-cold Solution I(50mM glucose, 25mM Tris·Cl(pH8.0), 10mM EDTA(pH8.0) 1㎖을 넣고 vortexing을 하여 재현탁시켰다. 여기에 금방 만든 Solution Ⅱ(0.2 N NaOH, 1% SDS) 2㎖을 넣은 후 옆으로 흔들어 준 다음 5분 동안 얼음에 담가 놓았다. 그 다음에 ice-cold Solution Ⅲ(5M potassium acetate 60㎖, glacial acetic acid 11.5㎖, H2O 28.5㎖) 1.5㎖을 넣고 옆으로 흔들어 준 후 얼음에 5분 동안 담가 놓은 다음 원심분리하여 상징액을 miracloth나 cheesecloth를 이용해 새 튜브로 옮겼다. 같은 부피의 phenol/chloroform/isoamyl alcohol을 넣어 잘 섞어 준 후 12,000xg에서 5분간 원심분리하여 수용액 층을 취한 후 0.1배 부피의 3 M sodium acetate(pH5.2)를 넣고 2배 부피의 에탄올을 넣어 잘 섞은 다음 -20℃에서 1시간 보관 후 20분간 12,000xg로 원심분리하여 상층액을 버리고 70% 에탄올로 한 번 씻은 다음 동결건조하였다. Pellet을 TE-buffer에 녹인 후 microfuge 튜브로 옮겨 RNase를 처리한 다음 같은 부피의 phenol/chloroform/isoamyl alcohol을 넣어 잘 섞어 준 후 12,000xg에서 5분간 원심분리하여 수용액 층을 취하였다. 같은 부피의 chloroform/isoamyl alcohol을 넣어 잘 섞어 준 후 원심분리하여 다시 한번 수용액 층을 취한 후 0.1배 부피의 3M sodium acetate(pH 5.2)를 넣고 2배 부피의 에탄올을 넣어 잘 섞은 다음, -20℃에서 1시간 보관 후 20분간 12,000xg로 원심 분리하여 상층액을 버리고 70% 에탄올로 한 번 씻은 다음 동결건조하였다. 이렇게 뽑은 플라스미드를 EcoRI으로 자른 후 0.8% agarose gel에 걸어 원하는 band를 자른 후 dialysis bag을 이용해 electroelution하였다. Elution한 후 DNA를 정제하기 위해 같은 부피의 부탄올을 넣고 섞어 준 다음 원심분리하여 수용액 층을 취한 같은 부피의 phenol/chloroform/isoamyl alcohol을 넣어 잘 섞어 준 후 12,000xg에서 5분간 원심분리하여 수용액 층을 취한 다음 같은 부피의 chloroform/isoamyl alcohol을 넣어 잘 섞어 준 후 원심분리하여 다시 한번 수용액 층을 취하였다. 이에 0.1배 부피의 3M sodium acetate(pH 5.2)를 넣고 2배 부피의 에탄올을 넣어 잘 섞은 다음 -20℃에서 1시간 보관 후 20분간 12,000xg로 원심분리하여 상등액을 버리고 70% 에탄올로 한 번 씻은 다음 동결건조하였으며, EcoRI으로 자른 pBluescript KS를 dephosphorylation시키기 위해 EcoRI으로 자른 pBluescript KS에 10X CIP dephosphorylation buffer와 CIP(calf intestinal alkaline phosphatase)를 넣고 37℃에서 30분간 반응시킨 후 5mM EDTA(pH 8.0)을 넣고 75℃에서 10분간 가열하였다. 여기에 같은 부피의 phenol/chloroform/isoamyl alcohol을 넣어 잘 섞어 준 후 12,000xg에서 5분간 원심분리하였다. 수용액 층을 취한 후 같은 부피의 chloroform/isoamyl alcohol을 넣고 섞어 준 후 12,000xg에서 5분간 원심분리하고, 수용액 층을 새 튜브에 옮긴 후 0.1배 부피의 3 M sodium acetate와 2.5배 부피의 에탄올을 넣은 다음 -20℃에서 1-2 시간 동안 보관하였다. 4℃에서 12,000xg로 20분 동안 원심분리한 후 pellet을 70% 에탄올로 씻어 주고 동결건조한 후 TE buffer(pH 8.0)에 녹였다.Expression vector was produced as in the schematic diagram of FIG. That is, the carrier of CyMV cDNA was used as pBluescript KS, and incubated for 12 hours in 50ml LB medium containing pBluescript KS containing ampicillin (50µg / ml), followed by centrifugation and removal of the medium, followed by alkaline lysis method. Plasmid was extracted. Pellet was resuspended by adding 1 ml of ice-cold Solution I (50 mM glucose, 25 mM Tris-Cl (pH 8.0), 10 mM EDTA (pH 8.0) and vortexing to the solution II (0.2 N NaOH, 2 ml of 1% SDS) was shaken to the side and soaked in ice for 5 minutes, then ice-cold Solution III (60 ml of 5M potassium acetate, 11.5 ml of glacial acetic acid, 28.5 ml of H 2 O) 1.5 After adding ㎖, shake to the side and soak for 5 minutes on ice, centrifuge and transfer the supernatant to a new tube using miracloth or cheesecloth, add the same volume of phenol / chloroform / isoamyl alcohol and mix well. After centrifugation for 10 minutes, the aqueous layer was taken, and 0.1 volume of 3 M sodium acetate (pH5.2) was added thereto, and 2 volumes of ethanol were mixed and mixed well. After 1 hour storage at -20 ° C, centrifugation was performed at 12,000xg for 20 minutes. The supernatant was discarded and washed once with 70% ethanol and lyophilized. After dissolving in E-buffer, transfer to microfuge tube, process RNase, add the same volume of phenol / chloroform / isoamyl alcohol, mix well, and centrifuge at 12,000xg for 5 minutes to get an aqueous layer. Add alcohol, mix well, and centrifuge again to get an aqueous layer. Add 0.1 times volume of 3M sodium acetate (pH 5.2), add 2 times volume of ethanol, mix well, and store at -20 ℃ for 1 hour. The supernatant was discarded by centrifugation at 12,000 × g for 1 minute, washed once with 70% ethanol, and lyophilized, and the plasmids were cut with EcoRI, cut onto a band of 0.8% agarose, and then electroelution using a dialysis bag. After elution, add the same volume of butanol to purify DNA, and then centrifuge. Add the same volume of phenol / chloroform / isoamyl alcohol, mix well, and centrifuge at 12,000xg for 5 minutes. After taking the same volume of chloroform / isoamyl alcohol was mixed well and centrifuged again to take an aqueous layer. Add 0.1 times volume of 3M sodium acetate (pH 5.2), add 2 times volume of ethanol, mix well, store for 1 hour at -20 ℃, centrifuge at 12,000xg for 20 minutes, discard supernatant, and wash once with 70% ethanol. Next, lyophilized, 10X CIP dephosphorylation buffer and CIP (calf intestinal alkaline phosphatase) were added to pBluescript KS cut with EcoRI, and reacted at 37 ° C. for 30 minutes to dephosphorylation pGreenscript KS cut with EcoRI, followed by 5 mM EDTA (pH 8.0) Heated at 75 ° C. for 10 minutes. Into the same volume of phenol / chloroform / isoamyl alcohol was mixed well and centrifuged for 5 minutes at 12,000xg. Take an aqueous layer, add the same volume of chloroform / isoamyl alcohol, mix and centrifuge at 12,000xg for 5 minutes, transfer the aqueous layer to a new tube, and add 0.1 times volume of 3 M sodium acetate and 2.5 times volume of ethanol. Then stored at -20 ° C for 1-2 hours. After centrifugation at 12,000xg for 20 minutes at 4 ℃, the pellet was washed with 70% ethanol, lyophilized and dissolved in TE buffer (pH 8.0).

CyMV cDNA와 벡터와의 ligationLigation of CyMV cDNA with Vectors

EcoRI adaptor가 ligation된 CyMV cDNA 10㎕(10ng), CIP가 처리된 EcoRI-cut pBluescript KS 7㎕(50ng) 10X T4 DNA ligase buffer 2㎕와 T4 DNA ligase 1㎕(10units)를 넣어 잘 섞어 준 후 14∼16℃에서 8시간 동안 반응시켰다.10μl (10ng) of CyMV cDNA with ligation of EcoRI adapter, 7μl (50ng) of EcoRI-cut pBluescript KS treated with CIP, add 2μl of 10X T4 DNA ligase buffer and 1μl of T4 DNA ligase (10units) The reaction was carried out at ˜16 ° C. for 8 hours.

Competent cell 준비 및 transformationCompetent cell preparation and transformation

E. coli JM109를 30㎖ LB 액체배지에 접종하여 12시간 동안 배양한 후 여기에서 500㎕를 취하여 30㎖ LB배지에 접종하여 0D600가 거의 0.5에 도달할 때까지 배양하였다. 배양세포를 5,000 rpm에서 10분간 원심분리한 후 배지를 버리고 여기에 ice-cold 0.1 M CaCl21,2㎖를 넣어 재현탁시킨 다음 microfuge 튜브에 200㎕씩 분주하였다. 준비된 competent cell에 cDNA와 pBluescript KS의 ligation 혼합물 10㎕를 넣고 얼음에 30분 동안 담가 놓은 다음 42℃에서 90초 동안 가열시킨 후 얼음에 1∼2분간 담가 놓았다. 여기에 800㎕의 LB 배지를 첨가한 후 37℃에서 1시간 동안 배양한 다음 50㎕/㎖의 ampicillin과 50㎎/㎖ X-gal 16㎕, 200㎎/㎖ IPTG 4㎕가 첨가된 LB plate에 도말하였다.E. coli JM109 was inoculated in 30 ml LB broth and incubated for 12 hours. 500 μl was inoculated into 30 ml LB broth to incubate until 0D 600 reached nearly 0.5. The cultured cells were centrifuged at 5,000 rpm for 10 minutes, discarded, and resuspended in 1,2 ml of ice-cold 0.1 M CaCl 2 , and 200 µl were dispensed into microfuge tubes. 10 μl of the ligation mixture of cDNA and pBluescript KS was put into the prepared competent cell, soaked in ice for 30 minutes, heated at 42 ° C. for 90 seconds, and soaked in ice for 1-2 minutes. After adding 800 μl of LB medium, incubated at 37 ° C. for 1 hour, 50 μl / ml of ampicillin, 16 mg of 50 mg / ml X-gal and 4 μl of 200 mg / ml IPTG were added to the LB plate. Smeared.

CyMV cDNA 클론 선발CyMV cDNA Clone Selection

CyMV cDNA가 pBluescript KS에 삽입되었는가를 확인하기 위하여 transformation된 cell을 X-gal, IPTG가 포함된 LB 고체배지에 도말하였다. 37℃에서 12시간 동안 배양한 후 blue/white screening을 하고 white colony만 ampicillin(50㎍/㎖)이 첨가된 3㎖ LB 액체배지에 접종하여 플라스미드를 뽑은 후 EcoRI으로 자른 다음 agarose gel에 전기영동하였다. 이 중 하나 즉 400bp의 pCyMV3을 probe로 선택한 후 ECL을 이용하여 Southern blot을 수행하였다. Agarose gel을 denaturation 용액(0.5 N NaOH, 1.5 M NaCl)에서 45분간 처리하고 neutralization 용액(1 M Tris pH7.4, 1.5 M NaCl)으로 30분, 15분 2번에 걸쳐 처리한 다음 nylon membrne에 capillary transfer하고 자외선으로 고정하여 membrane을 준비하였다. 이 membrane들을 각각 2 x SSC에 담가 놓았다가 다른 용기로 옮긴 다음 hybridization buffer(blocking agent 포함)를 넣고 42℃에서 1시간 30분 동안 prehybridization시켰다. 사용될 probe는 5분 동안 끓여서 denaturation시킨 후 5분 동안 얼음에 담가 놓은 다음 spin down시키고 여기에 probe와 같은 양의 DNA labelling reagent를 넣어 주고 잘 섞은 다음 마찬가지로 probe와 같은 양의 glutaraldehyde solution을 넣어 잘 섞어 준 후 37℃에서 10분간 반응시켰다. 이렇게 준비된 probe를 hybridization buffer에 넣은 후 42℃에서 overnight한 후 primer washing buffer로 55℃에서 10분 씩 2번, secondary washing buffer로 실온에서 5분 씩 2번 washing하였다. Membrane에 있는 물기를 제거하고 detection reagent를 넣어 준 후 X-ray 필름에 노출시킨 후 필름을 현상하였다. 또한 Southern blot 결과 나온 클론 중 길이가 가장 긴 클론이 CyMV로부터 합성되었다는 것을 확인하기 위하여 그 클론 즉 pCyMV1을 probe로 하여 Northern blot을 수행하였다. 도 1은 이상 설명한 바와 같이 pCyMV1의 합성과정과 그 구조를 설명하고 있다. 발현벡타의 크기는 약 1.6kb였다.In order to confirm that CyMV cDNA was inserted into pBluescript KS, the transformed cells were plated in LB solid medium containing X-gal and IPTG. After 12 hours of incubation at 37 ° C, blue / white screening was performed and the white colony was inoculated in 3 ml LB liquid medium to which ampicillin (50 µg / ml) was added. The plasmids were extracted, cut with EcoRI, and electrophoresed on agarose gel. . One of these, 400bp pCyMV 3 was selected as a probe and Southern blot was performed using ECL. Agarose gel was treated with denaturation solution (0.5 N NaOH, 1.5 M NaCl) for 45 minutes, neutralization solution (1 M Tris pH7.4, 1.5 M NaCl) for 30 minutes, 15 minutes twice, and capillary in nylon membrne. The membrane was prepared by transfer and fixation with ultraviolet rays. Each of the membranes was immersed in 2 x SSC and then transferred to another container. Then, the hybridization buffer (including the blocking agent) was added and prehybridized at 42 ° C for 1 hour and 30 minutes. The probe to be used is boiled for 5 minutes, denaturated, soaked in ice for 5 minutes, spin down, added with the same amount of DNA labeling reagent as the probe, mixed well, and then mixed with the same amount of glutaraldehyde solution. After reacting for 10 minutes at 37 ℃. The probe thus prepared was placed in a hybridization buffer and then overnight at 42 ° C., and then washed twice at 55 ° C. with primer washing buffer for 10 minutes each and twice with secondary washing buffer for 5 minutes at room temperature. The water in the membrane was removed, a detection reagent was added, the X-ray film was exposed, and the film was developed. In addition, Northern blot was performed using the clone, pCyMV 1 as a probe, to confirm that the longest clone was synthesized from CyMV. 1 illustrates the synthesis of pCyMV 1 and its structure as described above. The expression vector was about 1.6 kb in size.

이하에서는 본 발명에서 선발된 clone을 재차 서브클로닝하여 염기서열을 결정하는 과정을 설명한다.Hereinafter, the process of determining the nucleotide sequence by subcloning the clone selected in the present invention again.

제3공정 : Subcloning 및 염기서열 결정Step 3: Subcloning and Sequence Determination

SubcloningSubcloning

Southern과 Northern blot을 통해 선발된 클론, 즉 pCyMV1를 EcoRI으로 자른 뒤 agarose gel에서 전기영동한 후 insert 부분만을 elution하여 이를 여러 가지 제한효소로 BamHI, EcoRV, HindⅢ, MspI, PstI, PvuⅡ, SacI, SmaI, XbaI으로 절단하였다. 이중 잘 절단되는 MspI, MspI + PvuⅡ, PstI으로 자른 뒤 T4 DNA polymerase를 처리하여 blunt end로 만든 뒤 agarose gel에 전기영동하여 해당하는 부분을 잘라 각각 elution한 다음 CIP 처리한 SmaI-cut pBluescript KS에 ligation시킨 후 E. coli JM109에 transformation시켰다. 작성된 제한효소지도는 도 2와 같다. Transformation된 cell을 X-gal, IPTG가 포함된 LB 고체배지에 도말하여 37℃에서 12시간 동안 배양한 후 white colony를 각각 5개 씩 ampicillin(50㎍/㎖)이 첨가된 3㎖ LB 액체배지에 접종·배양하여 플라스미드를 추출한 후 HindⅢ+SmaI으로 절단한 다음 적당한 subclone들을 선발하였다.Clones selected through Southern and Northern blot, ie pCyMV 1 , were cut with EcoRI and electrophoresed on agarose gel, followed by elution of only the inserts. These restriction enzymes were used as BamHI, EcoRV, HindIII, MspI, PstI, PvuII, SacI Cleavage with SmaI, XbaI. Cut into well-cut MspI, MspI + PvuII, PstI and then treated with T4 DNA polymerase to make blunt end, electrophoresis on agarose gel, cut the corresponding parts and elution each, then lipped into CIP-treated SmaI-cut pBluescript KS And transformed into E. coli JM109. The prepared restriction map is shown in FIG. 2. The transformed cells were plated in LB solid medium containing X-gal and IPTG, incubated at 37 ° C for 12 hours, and 5 white colonies were added to 3 ml LB liquid medium containing 5 ampicillin (50 μg / ml). After inoculation and culture, the plasmid was extracted, digested with HindIII + SmaI, and appropriate subclones were selected.

염기서열 결정Sequencing

상기 제한효소지도에 따라 7개의 subclone들을 작성한 후 정방향과 역방향 primer를 사용하여 pCyMV1의 염기서열을 결정하였다.(도3)Seven subclones were prepared according to the restriction map, and the base sequence of pCyMV 1 was determined using forward and reverse primers (FIG. 3).

즉 CyMV cDNA의 염기서열 결정은 Sanger의 방법에 따라 USB의 sequenase version 2.0으로 시행하였다. 플라스미드 2-3㎍을 0.1배 부피의 2 M NaOH/2 mM EDTA로 37℃에서 30분간 denaturation한 다음 0.1배 부피의 3 M sodium acetate(pH5.2)를 넣고 2.5배 부피의 에탄올을 넣어 잘 섞은 다음 -20℃에서 1시간 보관 후 20분간 12,000xg로 원심분리하여 상층액을 버리고 70% 에탄올로 두 번 씻은 다음 동결건조하였다. 여기에 pUC-M13 sequencing primer를 1㎕ 넣고 reaction buffer (200mM Tris-HCl/pH 7.5, 100 mM MgCl2, 250㎜ NaCl) 2㎕와 H2O 7㎕를 넣어 65℃에서 2분 동안 둔 후 30분에 걸쳐서 천천히 식혔다. 서로 다른 튜브 4개에 A, T, G, C를 표시하고 각각의 termination mix(80 μM each of dGTP, dATP, dCTP, 8 μM ddNTP, 50 mM NaCl)를 2.5㎕씩 나누어 넣었다. Annealing된 튜브에 labelling mix 2㎕씩 넣고 상온에서 2-5분간 labelling하고 먼저 37℃로 데워 놓은 각 termination mix에서 3.5㎕씩 분주하고 5분간 반응시킨 다음 stop solution 4.5 ㎕(95% formamide, 20 mM EDTA, 0.05% Bromophenol Blue, 0.05% Xylene cyanol FF)를 넣고 75℃-85℃로 10분간 처리한 후 원심분리하여 모은 후 sequcening gel의 각 lane에 3㎕씩 올렸다. Sequencing gel은 6% acryamide를 사용하였으며 전기영동 후 10% methanol, 10% acetic acid로 고정하고 말린 후 1-2일 정도 X-ray필름에 노출시킨 다음 현상하였다.In other words, the nucleotide sequence of CyMV cDNA was determined by sequenase version 2.0 of USB according to Sanger's method. 2-3 μg of the plasmid was denaturated with 0.1 M volume of 2 M NaOH / 2 mM EDTA at 37 ° C. for 30 minutes, and then 0.1 M volume of 3 M sodium acetate (pH5.2) was added, followed by 2.5 times volume of ethanol. Next, after 1 hour storage at -20 ℃ centrifuged at 12,000xg for 20 minutes to discard the supernatant, washed twice with 70% ethanol and lyophilized. 1 μl of pUC-M13 sequencing primer was added thereto, 2 μl of reaction buffer (200 mM Tris-HCl / pH 7.5, 100 mM MgCl 2 , 250 mm NaCl) and 7 μl of H 2 O were added at 65 ° C. for 2 minutes. Chilled slowly over minutes. A, T, G, and C were labeled in four different tubes and 2.5 μl of each termination mix (80 μM each of dGTP, dATP, dCTP, 8 μM ddNTP, 50 mM NaCl) was added. 2 µl of the labeling mix was added to the annealed tube and labeled at room temperature for 2-5 minutes. First, 3.5 µl of each of the termination mix was warmed to 37 ° C, reacted for 5 minutes, and then 4.5 µl (95% formamide, 20 mM EDTA stop solution). , 0.05% Bromophenol Blue, 0.05% Xylene cyanol FF) was added, and then treated at 75 ° C.-85 ° C. for 10 minutes, collected by centrifugation, and 3 μl of each lane of the sequcening gel was added. 6% acryamide was used for sequencing gel. After electrophoresis, it was fixed with 10% methanol and 10% acetic acid, dried and exposed to X-ray film for 1-2 days.

CyMV의 염기서열은 다른 potexvirus와 마찬가지로 CyMV의 외피단백질 유전자가 3'쪽에 위치한다는 것과 3'쪽이 polyadenylation되어 있다는 것을 확인할 수 있었으며(Sonenber et al., 1978) 외피단백질이 660bp의 nucleotide로부터 translation된다는 것을 알 수 있었다. CyMV의 염기서열을 Chia등이 보고한 CyMV의 염기서열과 비교한 결과 nucleotide 수준에서 약 94%의 유사성을 보였으며 대부분 T와 C, 그리고 A와 G사이에서 차이를 보였다. Potexvirus에서 hexanucleotide motif, 5'-ACUUAA는 3'non-coding region에 보존되어 있는데 도 3에서 밑줄 친 부분이 이 부분으로써 potexvirus에서 이 motif는 대부분 poly(A)의 약 30-40bp 위쪽에 위치하는데 CyMV의 경우에는 poly(A)로부터 59째에 이 motif가 존재한다는 것을 알 수 있었다. 이 부분은 replicase가 template의 인식에 관여하는 cis-acting element로 작용하여 negative-strand genomic RNA의 생성에 관여할 것이라고 판단되었다.As with other potexviruses, the nucleotide sequence of CyMV showed that the envelope protein gene of CyMV was located on the 3 'side and the polyadenylation of the 3' side (Sonenber et al., 1978). The envelope protein was translated from the 660bp nucleotide. Could know. Comparing the nucleotide sequence of CyMV with that of CyMV reported by Chia et al., It showed about 94% similarity in nucleotide level, and most showed differences between T and C, and A and G. In the Potexvirus, the hexanucleotide motif, 5'-ACUUAA, is conserved in the 3'non-coding region, which is underlined in Figure 3, and in the potexvirus this motif is mostly about 30-40 bp above the poly (A) CyMV. In the case of, we can see that this motif exists at 59th from poly (A). This part was considered to be involved in the generation of negative-strand genomic RNA by acting as a cis-acting element involved in template recognition.

제4공정 : 식물 발현용 벡터 제조Fourth Step: Preparation of Plant Expression Vector

식물 발현용 벡터에 CyMV외피단백질 유전자의 삽입Insertion of CyMV Envelope Protein Gene into Plant Expression Vector

pCyMV1을 PstI+EcoRI으로 자르고 T4 DNA Polymerase를 처리하여 blunt end 로 만든 후 0.8% gel에 전기 영동하여 외피단백질 유전자가 포함된 band를 잘라 elution 하였다. 이것을 SmaI-cut pGEM-7Z(+) vector에 ligationt시킨 후 E. coli JM109에 transformation시킨 다음 12개의 white colony를 선발하여 DNA를 준비한 후 EcoRI과 BamHI으로 잘라 외피단백질 유전자와 삽입여부를 확인하였다.pCyMV1 was cut with PstI + EcoRI and treated with T4 DNA Polymerase to make blunt end, followed by electrophoresis on 0.8% gel to cut and elution the band containing the envelope protein gene. After ligation of the SmaI-cut pGEM-7Z (+) vector, transformation to E. coli JM109, 12 white colonies were selected, DNA was prepared, and cut with EcoRI and BamHI to confirm the envelope protein gene and insertion.

또한 이 DNA들을 BamHI과 PvuⅡ로 잘라 외피단백질 유전자의 삽입방향을 확인하였고 이를 sequencing을 통하여 재차 확인한 결과 T7 promotor에 대하여 정방향(sense)으로 삽입된 것과 역방향(antisense)으로 삽입된 것으로 구분하여 이 클론들을 각각 pCyCPS와 pCyCPA라고 명명하였다.(도4)In addition, the DNA was cut into BamHI and PvuII, and the insertion direction of the envelope protein gene was confirmed, and the sequencing was confirmed again. As a result, these clones were classified into those inserted in the forward direction and antisense in the T7 promotor. Named pCyCPS and pCyCPA, respectively (Fig. 4).

한편, pMBPI을 kanamycin(50 ㎍/㎖)이 첨가된 LB액체배지에 배양하여 DNA를 준비한 후 XbaI으로 자른 다음 CIP를 처리한 후 전기영동하여 elution하였다.Meanwhile, pMBPI was cultured in LB liquid medium to which kanamycin (50 ㎍ / mL) was added to prepare DNA, which was then cut into XbaI, treated with CIP, and electrophoresed to elution.

이와 마찬가지로 pCyCPS를 XbaI으로 잘라 CyMV외피단백질 유전자가 포함된 band를 elution하여 XbaI-cut pMBPI에 ligation 시키고 E. coli JM109에 transformation시켜 15개의 clone을 얻었다. Transfromation 된 cell을 kanamycin(50 ㎍/㎖)이 포함된 LB고체배지에 도말하여 transformant 4개의 clone을 선발하였으며 이 클론들을 kanamycin(50㎍/㎖)이 첨가된 3㎖ LB액체배지에 배양하여 DNA를 준비한 뒤 XbaI, HindⅢ+KpnI으로 각각 잘라 외피단백질유전자의 삽입여부와 삽입방향을 확인하였다. 여기에서 얻은 클론들을 각각 pMBPCPS와 pMBPCPA라 명명하였다.(도 5)Likewise, pCyCPS was cut with XbaI to elution the band containing CyMV envelope protein gene, ligation to XbaI-cut pMBPI, and transformed into E. coli JM109 to obtain 15 clones. The transfromated cells were plated in LB solid medium containing kanamycin (50 μg / mL) and four transformant clones were selected. The clones were cultured in 3 mL LB liquid medium containing kanamycin (50 μg / mL). After preparation, cut each with XbaI and HindIII + KpnI to confirm the insertion and orientation of the envelope protein gene. The clones obtained here were named pMBPCPS and pMBPCPA, respectively (FIG. 5).

이들 클론들은 HindⅢ+KpnI으로 잘랐을 때 정방향으로 삽입되었을 경우에는 vector부분을 제외한 두 개의 주 band가 나오고 역방향으로 삽입되었을 경우에는 하나의 주 band만 나오게 되므로 각 클론들을 HindⅢ+KpnI으로 잘라본후 1.2% agarose gel에 전기 영동하여 각 클론의 삽입방향을 확인한 결과 도 6에서 보는 바와 같이 1.8kb의 한 band만 나온 lanes 2-3의 클론들은 CyMV의 외피단백질 유전자가 35S promoter에 대해 역방향으로 삽입되어 있는 것이며, 0.8kb와 1.0kb 두 band가 나온 lanes 4-5의 클론들은 정방향으로 삽입되어 있는 것임을 알 수 있었다. 이렇게 해서 얻은 각 클론 중 정방향으로 삽입된 것을 pMBPCPS/J, 역방향으로 삽입된 것을 pMBPCPA/J라고 명명하였다. 여기서, 형질전환된 E. coli 균주를 1997. 10. 17 생명공학연구소에 기탁번호 KCTC 8838P로 기탁하였다.When these clones were cut with HindIII + KpnI, two major bands except for the vector part emerged when inserted in the forward direction, and only one main band appeared when inserted in the reverse direction, so each clone was cut with HindIII + KpnI and then 1.2% agarose. As a result of confirming the insertion direction of each clone by electrophoresis on the gel, as shown in Figure 6, the clones of lanes 2-3, which had only one band of 1.8 kb, had the envelope protein gene of CyMV reversely inserted to the 35S promoter. The clones of lanes 4-5 with two bands, 0.8kb and 1.0kb, were inserted forward. Each of the clones thus obtained was named pMBPCPS / J in the forward direction and pMBPCPA / J in the reverse direction. Here, the transformed E. coli strain was deposited with the accession number KCTC 8838P to the Biotechnology Research Institute on October 17, 1997.

Agrobacterium tumefaciens LBA4404에 transformationTransformation to Agrobacterium tumefaciens LBA4404

또한 바이러스 저항성 식물체를 개발하기 위한 식물 발현용 벡터를 제조하기 위하여 pMBPCPS/J와 pMBPCPA/J를 Agrobacterium tumefaciens LBA4404에 transformation시켰다. 그 결과 나온 transformant로부터 DNA들을 추출한 뒤 HindⅢ+KpnI으로 자른 후 전기영동을 한 다음 CyMV의 외피단백질 유전자를 probe로 Southern blot을 수행하였다.In addition, pMBPCPS / J and pMBPCPA / J were transformed into Agrobacterium tumefaciens LBA4404 to prepare plant expression vectors for developing virus resistant plants. DNAs were extracted from the resulting transformant, cut with HindIII + KpnI, followed by electrophoresis, and Southern blot was performed by probe of the envelope protein gene of CyMV.

즉, Agrobacterium tumefaciens LBA4404를 YEP배지와 28℃에서 OD600가 거의 0.5에 도달할 때까지 배양한 후 원심분리하여 cell을 모은 다음 다음 배지를 제거하고 0.15 M NaCl을 10㎖ 넣고 재현탁하였다. 다시 원심분리하여 상징액을 제거하고 pellet을 ice-cold 1㎖의 20mM CaCl2에 재현탁시킨 다음 200㎕씩 분주하였다. 각 튜브에 pMBPCPS/J와 pMBPCPA/J를 넣고 얼음에 30분 동안 놓은 다음 액체 질소에 1분 동안 담근 후 바로 37℃에 5분 동안 담가 놓았다. 그 다음 각 튜브에 YEP배지를 800㎕ 넣고 28℃에서 3시간 동안 배양한 후 kanamycin(50㎍/㎕)이 포함된 YEP고체배지에 도말한 다음 28℃에서 2-3일간 배양하였다. 그 후 transformant들을 kanamycin(50㎍/㎕)이 포함된 3㎖ YEP액체배지에서 배양한 후 DNA를 추출한 뒤 DNA들을 HindⅢ+KpnI으로 자른 다음 전기영동을 하고(도 7a) CyMV의 외피단백질 유전자를 probe로 하여 Southern blot을 수행하였다.(도 7b)That is, Agrobacterium tumefaciens LBA4404 was incubated with YEP medium at 28 ° C. until the OD 600 reached almost 0.5, and then centrifuged to collect the cells, and then the medium was removed and 10 ml of 0.15 M NaCl was added and resuspended. The supernatant was removed by centrifugation again, and the pellet was resuspended in 1 ml of ice-cold 20 mM CaCl 2 , followed by aliquoting of 200 μl. In each tube, pMBPCPS / J and pMBPCPA / J were placed on ice for 30 minutes and then soaked in liquid nitrogen for 1 minute and then soaked at 37 ° C. for 5 minutes. Then, 800 μl of YEP medium was added to each tube and incubated at 28 ° C. for 3 hours, and then plated on YEP solid medium containing kanamycin (50 μg / μl), followed by incubation at 28 ° C. for 2-3 days. The transformants were then cultured in a 3 ml YEP liquid medium containing kanamycin (50 μg / μl), followed by extracting DNA, cutting the DNA with HindIII + KpnI, followed by electrophoresis (FIG. 7a), and probe the envelope protein gene of CyMV. Southern blot was performed (Fig. 7b).

식물발현용 벡터 pMBPCPS와 pMBPCPA DNA가 Agrobacterium tumefaciens LBA4404로 삽입되었는지 확인하고 이 클론들을 각각 pMBPCPS/L(sense)과 pMBPCPA/L(antisense)이라 명명하였다. 도 7b에서 보는 바와 같이 CyMV의 외피단백질 유전자를 probe로 Southern blot을 수행한 결과 pMBPCPS/L의 경우에는 0.8kb, pMBPCPA/L의 경우에는 1.8kb에서 hybridization반응이 일어났다. 여기서, 형질전환된 A. tumefaciens 균주를 1997. 10. 17 생명공학연구소에 기탁번호 KCTC 8839P로 기탁하였다.Plant expression vectors pMBPCPS and pMBPCPA DNA were inserted into Agrobacterium tumefaciens LBA4404 and these clones were named pMBPCPS / L (sense) and pMBPCPA / L (antisense), respectively. As shown in FIG. 7B, Southern blot of the envelope protein gene of CyMV was probed. As a result, hybridization reaction occurred at 0.8 kb for pMBPCPS / L and 1.8 kb for pMBPCPA / L. Here, the transformed A. tumefaciens strain was deposited with the accession number KCTC 8839P to the Biotechnology Research Institute on October 17, 1997.

이상 공정별 설명과 실시예를 통하여 알 수 있는 바와 같이 본 발명은 식물발현 벡터 pMBPCPS와 pMBPCPA를 이용하여 CyMV의 기주에 형질전환할 경우 CyMV에 저항성을 가지는 난초 식물을 개발하는 효과가 있다.As can be seen through the process description and examples described above, the present invention has the effect of developing an orchid plant resistant to CyMV when transformed to the host of CyMV using the plant expression vectors pMBPCPS and pMBPCPA.

이밖에도 본 발명은 본 발명의 식물발현용 벡터를 이용하여 형질전환이 잘 일어나는 담배 등에 우선적으로 형질전환시켜 CyMV에 대한 저항성 정도를 연구한 후 실제적으로 난초식물에 적용한다면 우리나라 난초 식물의 품질향상과 국제경쟁력을 강화하는 등 유전공학 및 원예산업 및 난초식물수출산업에 이르기까지 매우 유용한 발명인 것이다.In addition, the present invention is to improve the quality of Korean orchid plants and internationally if applied to orchid plants after studying the degree of resistance to CyMV by preferentially transforming tobacco, which transforms well using the plant expression vector of the present invention. It is a very useful invention from genetic engineering, horticultural industry, and orchid plant export industry.

Claims (4)

다음의 염기서열을 갖는 CyMV 외피단백질 유전자를 SmaⅠ-cut pGEM-7Z(+) vector에 도입시킨후 E. coli JM109를 변형시킨 다음 선발한 클론인 pCyCPS와 pCyCPA을 XbaⅠ-cut pMBⅠ에 도입시키고 E. coli JM109를 변형시켜 얻은 클론들 중 CyMV 외피단백질 유전자가 정방향으로 삽입된 플라스미드 벡터 pMBPCPS.CyMV envelope protein gene with the following nucleotide sequence was introduced into SmaI-cut pGEM-7Z (+) vector, E. coli JM109 was modified, and the selected clones pCyCPS and pCyCPA were introduced into XbaI-cut pMBⅠ. Plasmid vector pMBPCPS in which the CyMV envelope protein gene was inserted forward among clones obtained by modifying coli JM109.
Figure pat00001
Figure pat00001
제1항 기재의 플라스미드벡터로 형질전환된 E. coli JM109(기탁번호 KCTC 8838P).E. coli JM109 (Accession No. KCTC 8838P) transformed with the plasmid vector according to claim 1. 난초식물 모자이크바이러스(CyMV) 외피단백질이 삽입된 난초식물발현용 벡터 pCyMV1.Orchid Plant Mosaic Virus (CyMV) Orchid plant expression vector inserted pCyMV 1 with coat protein. 제1항의 염기서열을 갖는 CyMV 외피단백질 유전자를 SmaⅠ-cut pGEM-7Z(+) vector에 도입시킨후 E. coli JM109를 변형시킨 다음 선발한 클론인 pCyCPS와 pCyCPA을 XbaⅠ-cut pMBⅠ에 도입시키고 E. coli JM109를 변형시켜 얻은 클론들 중 CyMV 외피단백질 유전자가 역방향으로 삽입된 플라스미드 벡터 pMBPCPA.After introducing the CyMV envelope protein gene having the nucleotide sequence of claim 1 into the SmaI-cut pGEM-7Z (+) vector, E. coli JM109 was modified, and the selected clones, pCyCPS and pCyCPA, were introduced into XbaI-cut pMBⅠ. The plasmid vector pMBPCPA in which the CyMV envelope protein gene was reversely inserted among the clones obtained by modifying coli JM109.
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