JPWO2021157739A1 - - Google Patents
Info
- Publication number
- JPWO2021157739A1 JPWO2021157739A1 JP2021576209A JP2021576209A JPWO2021157739A1 JP WO2021157739 A1 JPWO2021157739 A1 JP WO2021157739A1 JP 2021576209 A JP2021576209 A JP 2021576209A JP 2021576209 A JP2021576209 A JP 2021576209A JP WO2021157739 A1 JPWO2021157739 A1 JP WO2021157739A1
- Authority
- JP
- Japan
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
- G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/20—Supervised data analysis
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Chemical & Material Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Medical Informatics (AREA)
- Biophysics (AREA)
- General Health & Medical Sciences (AREA)
- Biotechnology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Bioinformatics & Computational Biology (AREA)
- Theoretical Computer Science (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Evolutionary Biology (AREA)
- Analytical Chemistry (AREA)
- Genetics & Genomics (AREA)
- Organic Chemistry (AREA)
- Molecular Biology (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Data Mining & Analysis (AREA)
- Bioethics (AREA)
- Artificial Intelligence (AREA)
- Software Systems (AREA)
- Evolutionary Computation (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Public Health (AREA)
- Databases & Information Systems (AREA)
- Epidemiology (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP2020018989 | 2020-02-06 | ||
| JP2020018989 | 2020-02-06 | ||
| PCT/JP2021/004470 WO2021157739A1 (ja) | 2020-02-06 | 2021-02-06 | シングルセルＲＮＡ－Ｓｅｑ解析のカウントデータセットの補正方法、シングルセルＲＮＡ－Ｓｅｑの解析方法、細胞種の構成比率の解析方法、並びにこれらの方法を実行するための装置及びコンピュータプログラム |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| JPWO2021157739A1 true JPWO2021157739A1 (https=) | 2021-08-12 |
| JP7689737B2 JP7689737B2 (ja) | 2025-06-09 |
Family
ID=77199636
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2021576209A Active JP7689737B2 (ja) | 2020-02-06 | 2021-02-06 | シングルセルＲＮＡ－Ｓｅｑ解析のカウントデータセットの補正方法、シングルセルＲＮＡ－Ｓｅｑの解析方法、細胞種の構成比率の解析方法、並びにこれらの方法を実行するための装置及びコンピュータプログラム |
Country Status (6)
| Country | Link |
|---|---|
| US (1) | US20230074644A1 (https=) |
| EP (1) | EP4101933A4 (https=) |
| JP (1) | JP7689737B2 (https=) |
| CA (1) | CA3170368A1 (https=) |
| IL (1) | IL295227A (https=) |
| WO (1) | WO2021157739A1 (https=) |
Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2019018684A1 (en) * | 2017-07-21 | 2019-01-24 | The Board Of Trustees Of The Leland Stanford Junior University | SYSTEMS AND METHODS FOR ANALYZING MIXED CELL POPULATIONS |
-
2021
- 2021-02-06 EP EP21751230.0A patent/EP4101933A4/en not_active Withdrawn
- 2021-02-06 US US17/796,509 patent/US20230074644A1/en not_active Abandoned
- 2021-02-06 WO PCT/JP2021/004470 patent/WO2021157739A1/ja not_active Ceased
- 2021-02-06 CA CA3170368A patent/CA3170368A1/en active Pending
- 2021-02-06 IL IL295227A patent/IL295227A/en unknown
- 2021-02-06 JP JP2021576209A patent/JP7689737B2/ja active Active
Patent Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2019018684A1 (en) * | 2017-07-21 | 2019-01-24 | The Board Of Trustees Of The Leland Stanford Junior University | SYSTEMS AND METHODS FOR ANALYZING MIXED CELL POPULATIONS |
Non-Patent Citations (3)
| Title |
|---|
| KANG K. ET AL.: "CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene express", PLOS COMPUTATIONAL BIOLOGY, vol. Vol.15, No.12, e1007510, JPN6021013723, 2019, ISSN: 0005496873 * |
| MONACO G. ET AL.: "RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Ty", CELL REPORTS, vol. Vol.26, p.1627-1640, JPN6021013724, 2019, ISSN: 0005496874 * |
| TSOUCAS D. ET AL.: "Accurate estimation of cell-type composition from gene expression data", NATURE COMMUNICATIONS, vol. Vol.10, 2975, JPN6021013726, 2019, ISSN: 0005496875 * |
Also Published As
| Publication number | Publication date |
|---|---|
| US20230074644A1 (en) | 2023-03-09 |
| WO2021157739A1 (ja) | 2021-08-12 |
| CA3170368A1 (en) | 2021-08-12 |
| EP4101933A4 (en) | 2024-02-28 |
| EP4101933A1 (en) | 2022-12-14 |
| IL295227A (en) | 2022-10-01 |
| JP7689737B2 (ja) | 2025-06-09 |
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