JP7619443B2 - 情報処理プログラム、情報処理方法および情報処理装置 - Google Patents

情報処理プログラム、情報処理方法および情報処理装置 Download PDF

Info

Publication number
JP7619443B2
JP7619443B2 JP2023515916A JP2023515916A JP7619443B2 JP 7619443 B2 JP7619443 B2 JP 7619443B2 JP 2023515916 A JP2023515916 A JP 2023515916A JP 2023515916 A JP2023515916 A JP 2023515916A JP 7619443 B2 JP7619443 B2 JP 7619443B2
Authority
JP
Japan
Prior art keywords
vector
vectors
genome
information processing
learning
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
JP2023515916A
Other languages
English (en)
Japanese (ja)
Other versions
JPWO2022224336A1 (https=
JPWO2022224336A5 (https=
Inventor
正弘 片岡
光人 和田
量 松村
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Fujitsu Ltd
Original Assignee
Fujitsu Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Fujitsu Ltd filed Critical Fujitsu Ltd
Publication of JPWO2022224336A1 publication Critical patent/JPWO2022224336A1/ja
Publication of JPWO2022224336A5 publication Critical patent/JPWO2022224336A5/ja
Application granted granted Critical
Publication of JP7619443B2 publication Critical patent/JP7619443B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional [2D] or three-dimensional [3D] molecular structures, e.g. structural or functional relations or structure alignment
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B35/00—ICT specially adapted for in silico combinatorial libraries of nucleic acids, proteins or peptides
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Data Mining & Analysis (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Evolutionary Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Public Health (AREA)
  • Artificial Intelligence (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Evolutionary Computation (AREA)
  • Epidemiology (AREA)
  • Databases & Information Systems (AREA)
  • Bioethics (AREA)
  • Software Systems (AREA)
  • Chemical & Material Sciences (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Biochemistry (AREA)
  • Library & Information Science (AREA)
  • Molecular Biology (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Communication Control (AREA)
JP2023515916A 2021-04-20 2021-04-20 情報処理プログラム、情報処理方法および情報処理装置 Active JP7619443B2 (ja)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/JP2021/015983 WO2022224336A1 (ja) 2021-04-20 2021-04-20 情報処理プログラム、情報処理方法および情報処理装置

Publications (3)

Publication Number Publication Date
JPWO2022224336A1 JPWO2022224336A1 (https=) 2022-10-27
JPWO2022224336A5 JPWO2022224336A5 (https=) 2024-01-04
JP7619443B2 true JP7619443B2 (ja) 2025-01-22

Family

ID=83723418

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2023515916A Active JP7619443B2 (ja) 2021-04-20 2021-04-20 情報処理プログラム、情報処理方法および情報処理装置

Country Status (6)

Country Link
US (1) US20240006028A1 (https=)
EP (1) EP4328921A4 (https=)
JP (1) JP7619443B2 (https=)
CN (1) CN117043868A (https=)
AU (1) AU2021441603A1 (https=)
WO (1) WO2022224336A1 (https=)

Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2000507940A (ja) 1996-03-22 2000-06-27 ユニバーシティー オブ グエルフ 共通の機能特性を有する化学構造をコンピューターによって設計する方法
US20110131027A1 (en) 2004-05-18 2011-06-02 Solomon Research Llc Bioinformatics system
CN103189550A (zh) 2010-11-04 2013-07-03 先正达参股股份有限公司 高表达基因组合和其他生物组分组合的计算机模拟预测
JP2017504913A (ja) 2013-11-15 2017-02-09 インフィニットバイオＩｎｆｉｎｉｔｅｂｉｏ 治療設計のためのコンピュータ支援モデル化
JP2020154442A (ja) 2019-03-18 2020-09-24 株式会社日立製作所 生物反応情報処理システムおよび生物反応情報処理方法
JP2020530918A (ja) 2017-10-16 2020-10-29 イルミナ インコーポレイテッド バリアントの分類のための深層畳み込みニューラルネットワーク

Family Cites Families (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7047137B1 (en) * 2000-11-28 2006-05-16 Hewlett-Packard Development Company, L.P. Computer method and apparatus for uniform representation of genome sequences
JP5062634B2 (ja) 2006-03-09 2012-10-31 学校法人慶應義塾 塩基配列設計方法
CN107025386B (zh) * 2017-03-22 2020-07-17 杭州电子科技大学 一种基于深度学习算法进行基因关联分析的方法
KR20200026878A (ko) * 2017-06-06 2020-03-11 지머젠 인코포레이티드 균류 균주를 개량하기 위한 htp 게놈 공학 플랫폼
JP7763588B2 (ja) * 2017-09-05 2025-11-04 グリットストーン バイオ インコーポレイテッド Ｔ細胞療法用の新生抗原の特定法
US20200342955A1 (en) * 2017-10-27 2020-10-29 Apostle, Inc. Predicting cancer-related pathogenic impact of somatic mutations using deep learning-based methods
CN119851752A (zh) * 2018-02-27 2025-04-18 磨石生物公司 利用泛等位基因模型进行的新抗原鉴别
JP2020181959A (ja) * 2019-04-26 2020-11-05 東京エレクトロン株式会社 学習方法、管理装置および管理プログラム
CN113811949A (zh) * 2019-05-13 2021-12-17 富士通株式会社 评价方法、评价程序和评价装置

Patent Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2000507940A (ja) 1996-03-22 2000-06-27 ユニバーシティー オブ グエルフ 共通の機能特性を有する化学構造をコンピューターによって設計する方法
US20110131027A1 (en) 2004-05-18 2011-06-02 Solomon Research Llc Bioinformatics system
CN103189550A (zh) 2010-11-04 2013-07-03 先正达参股股份有限公司 高表达基因组合和其他生物组分组合的计算机模拟预测
JP2017504913A (ja) 2013-11-15 2017-02-09 インフィニットバイオＩｎｆｉｎｉｔｅｂｉｏ 治療設計のためのコンピュータ支援モデル化
JP2020530918A (ja) 2017-10-16 2020-10-29 イルミナ インコーポレイテッド バリアントの分類のための深層畳み込みニューラルネットワーク
JP2020154442A (ja) 2019-03-18 2020-09-24 株式会社日立製作所 生物反応情報処理システムおよび生物反応情報処理方法

Also Published As

Publication number Publication date
JPWO2022224336A1 (https=) 2022-10-27
EP4328921A1 (en) 2024-02-28
US20240006028A1 (en) 2024-01-04
CN117043868A (zh) 2023-11-10
AU2021441603A1 (en) 2023-09-28
EP4328921A4 (en) 2024-06-26
WO2022224336A1 (ja) 2022-10-27

Similar Documents

Publication Publication Date Title
TWI802728B (zh) 密碼子優化方法、包括其之系統及電子裝置、其核酸分子及使用其之蛋白質表現方法
Kukic et al. Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks
WO2007139584A2 (en) Methods for identifying sequence motifs, and applications thereof
Lupo et al. Pairing interacting protein sequences using masked language modeling
US20210317523A1 (en) Deepsimulator method and system for mimicking nanopore sequencing
Liu et al. Computational prediction of sigma-54 promoters in bacterial genomes by integrating motif finding and machine learning strategies
Xie et al. Multilevel attention network with semi-supervised domain adaptation for drug-target prediction
He et al. Predicting the sequence specificities of DNA-binding proteins by DNA fine-tuned language model with decaying learning rates
Zhang et al. Physics-aware graph neural network for accurate RNA 3D structure prediction
JP7619443B2 (ja) 情報処理プログラム、情報処理方法および情報処理装置
Kaghed et al. Multiple sequence alignment based on developed genetic algorithm
Bi A Monte Carlo EM algorithm for de novo motif discovery in biomolecular sequences
Bi A genetic-based EM motif-finding algorithm for biological sequence analysis
Elsayed et al. Evolutionary behavior of dna sequences analysis using non-uniform probabilistic cellular automata model
Huang et al. Computation of conformational entropy from protein sequences using the machine‐learning method—Application to the study of the relationship between structural conservation and local structural stability
Sgarbossa et al. Pairing interacting protein sequences using masked language modeling
Ghanty et al. Prediction of protein secondary structure using probability based features and a hybrid system
Shen et al. DARE: Sequence-structure dual-aware encoder for RNA-protein binding prediction
Zhang et al. Predicting TF-DNA binding motifs from chip-seq datasets using the bag-based classifier combined with a multi-fold learning scheme
AU2013206364B2 (en) Methods for identifying sequence motifs, and applications thereof
Leiva et al. NN-PRED: A novel consensus secondary structure prediction program using neural networks
Dey et al. A survey on multiple sequence alignment using metaheuristics
Raja et al. Nature inspired algorithms for genome subsequence assembly in Hadoop
Prema et al. Predicting Forward and Reverse Mutations from Protein Sequences Using Embeddings and Deep Learning
KR102060874B1 (ko) 니렌버그 rna 표준 유전자 코드의 수학적 설계 및 블록 순환 자켓 행렬에 기초한 분석

Legal Events

Date Code Title Description
A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20230928

A621 Written request for application examination

Free format text: JAPANESE INTERMEDIATE CODE: A621

Effective date: 20230928

A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20240903

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20241030

TRDD Decision of grant or rejection written
A01 Written decision to grant a patent or to grant a registration (utility model)

Free format text: JAPANESE INTERMEDIATE CODE: A01

Effective date: 20241210

A61 First payment of annual fees (during grant procedure)

Free format text: JAPANESE INTERMEDIATE CODE: A61

Effective date: 20241223

R150 Certificate of patent or registration of utility model

Ref document number: 7619443

Country of ref document: JP

Free format text: JAPANESE INTERMEDIATE CODE: R150