JP2025500815A - 次世代シーケンシングにおける一次分析 - Google Patents

次世代シーケンシングにおける一次分析 Download PDF

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Publication number
JP2025500815A
JP2025500815A JP2024534541A JP2024534541A JP2025500815A JP 2025500815 A JP2025500815 A JP 2025500815A JP 2024534541 A JP2024534541 A JP 2024534541A JP 2024534541 A JP2024534541 A JP 2024534541A JP 2025500815 A JP2025500815 A JP 2025500815A
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Prior art keywords
sequencing
concatemer
flow cell
base calling
molecule
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Pending
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JP2024534541A
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Japanese (ja)
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JP2025500815A5 (https=
Inventor
トンプソン，コナー
リウ，ツン－リー
クルグリャック，セミヨン
グオ，ミンハオ
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エレメント バイオサイエンシズ，インコーポレイティド
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Priority claimed from US17/547,602 external-priority patent/US11397870B2/en
Application filed by エレメント バイオサイエンシズ，インコーポレイティド filed Critical エレメント バイオサイエンシズ，インコーポレイティド
Publication of JP2025500815A publication Critical patent/JP2025500815A/ja
Publication of JP2025500815A5 publication Critical patent/JP2025500815A5/ja
Pending legal-status Critical Current

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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00—Image analysis
    • G06T7/30—Determination of transform parameters for the alignment of images, i.e. image registration
    • G06T7/33—Determination of transform parameters for the alignment of images, i.e. image registration using feature-based methods
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00—Indexing scheme for image analysis or image enhancement
    • G06T2207/10—Image acquisition modality
    • G06T2207/10064—Fluorescence image
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00—Indexing scheme for image analysis or image enhancement
    • G06T2207/30—Subject of image; Context of image processing
    • G06T2207/30004—Biomedical image processing
    • G06T2207/30024—Cell structures in vitro; Tissue sections in vitro

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  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Theoretical Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Medical Informatics (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Immunology (AREA)
  • Evolutionary Computation (AREA)
  • Signal Processing (AREA)
  • Genetics & Genomics (AREA)
  • Artificial Intelligence (AREA)
  • Bioethics (AREA)
  • Data Mining & Analysis (AREA)
  • Databases & Information Systems (AREA)
  • Epidemiology (AREA)
  • General Physics & Mathematics (AREA)
  • General Engineering & Computer Science (AREA)
  • Public Health (AREA)
  • Software Systems (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
JP2024534541A 2021-12-10 2022-12-09 次世代シーケンシングにおける一次分析 Pending JP2025500815A (ja)

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US17/547,602 2021-12-10
US17/547,602 US11397870B2 (en) 2020-08-31 2021-12-10 Single-pass primary analysis
US202263349421P 2022-06-06 2022-06-06
US63/349,421 2022-06-06
US17/854,042 2022-06-30
US17/854,042 US11915444B2 (en) 2020-08-31 2022-06-30 Single-pass primary analysis
US202263388183P 2022-07-11 2022-07-11
US63/388,183 2022-07-11
PCT/US2022/052448 WO2023107719A2 (en) 2021-12-10 2022-12-09 Primary analysis in next generation sequencing

Publications (2)

Publication Number Publication Date
JP2025500815A true JP2025500815A (ja) 2025-01-15
JP2025500815A5 JP2025500815A5 (https=) 2025-12-16

Family

ID=86731139

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2024534541A Pending JP2025500815A (ja) 2021-12-10 2022-12-09 次世代シーケンシングにおける一次分析

Country Status (6)

Country Link
EP (1) EP4444911A4 (https=)
JP (1) JP2025500815A (https=)
KR (1) KR20240159875A (https=)
AU (1) AU2022407175A1 (https=)
CA (1) CA3240450A1 (https=)
WO (1) WO2023107719A2 (https=)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2019241305A1 (en) 2018-06-12 2019-12-19 Element Biosciences, Inc. Improved reverse transcriptase for nucleic acid sequencing
US10704094B1 (en) 2018-11-14 2020-07-07 Element Biosciences, Inc. Multipart reagents having increased avidity for polymerase binding
US10768173B1 (en) 2019-09-06 2020-09-08 Element Biosciences, Inc. Multivalent binding composition for nucleic acid analysis
WO2020102766A2 (en) 2018-11-15 2020-05-22 Element Biosciences, Inc. Methods for generating circular nucleic acid molecules
US12313627B2 (en) 2019-05-01 2025-05-27 Element Biosciences, Inc. Multivalent binding composition for nucleic acid analysis
US12391929B2 (en) 2019-05-24 2025-08-19 Element Biosciences, Inc. Polymerase-nucleotide conjugates for sequencing by trapping
US11287422B2 (en) 2019-09-23 2022-03-29 Element Biosciences, Inc. Multivalent binding composition for nucleic acid analysis
AU2022316142A1 (en) 2021-07-21 2024-02-22 Element Biosciences, Inc. Optical systems for nucleic acid sequencing and methods thereof
WO2025136957A1 (en) * 2023-12-18 2025-06-26 Pleno, Inc. Systems and methods for decoding by sequencing
WO2025212654A1 (en) * 2024-04-02 2025-10-09 Element Biosciences, Inc. Library molecule titration for tunable surface density in polony sequencing
CN120636551B (zh) * 2025-06-05 2026-04-10 上海赛陆生命科学有限公司 基因测序的模板构建方法、产品、基因测序仪及介质

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2001061044A1 (en) * 2000-02-15 2001-08-23 Lynx Therapeutics, Inc. Data analysis and display system for ligation-based dna sequencing
EP3257949A1 (en) * 2005-06-15 2017-12-20 Complete Genomics Inc. Nucleic acid analysis by random mixtures of non-overlapping fragments
US8965076B2 (en) * 2010-01-13 2015-02-24 Illumina, Inc. Data processing system and methods
US11859246B2 (en) * 2013-12-11 2024-01-02 Accuragen Holdings Limited Methods and compositions for enrichment of amplification products
WO2016060974A1 (en) * 2014-10-13 2016-04-21 Life Technologies Corporation Methods, systems, and computer-readable media for accelerated base calling
AU2020388573A1 (en) * 2019-11-21 2022-06-23 10X Genomics, Inc, Spatial analysis of analytes
WO2021133911A1 (en) * 2019-12-23 2021-07-01 Cold Spring Harbor Laboratory Mixseq: mixture sequencing using compressed sensing for in-situ and in-vitro applications

Also Published As

Publication number Publication date
EP4444911A2 (en) 2024-10-16
CA3240450A1 (en) 2023-06-15
WO2023107719A3 (en) 2023-07-20
KR20240159875A (ko) 2024-11-07
EP4444911A4 (en) 2025-12-17
AU2022407175A1 (en) 2024-06-27
WO2023107719A2 (en) 2023-06-15

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