JP2023547298A - クラスターごとの強度補正及びベースコールのためのシステム及び方法 - Google Patents

クラスターごとの強度補正及びベースコールのためのシステム及び方法 Download PDF

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JP2023547298A
JP2023547298A JP2022580968A JP2022580968A JP2023547298A JP 2023547298 A JP2023547298 A JP 2023547298A JP 2022580968 A JP2022580968 A JP 2022580968A JP 2022580968 A JP2022580968 A JP 2022580968A JP 2023547298 A JP2023547298 A JP 2023547298A
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sequencing
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エリック・ジョン・オジャード
アブデ・アリ・フナイド・カガルワーラ
ラミ・メヒオ
ニティン・ウドパ
ギャヴィン・デレク・パーナビー
ジョン・エス・ヴィエチェリ
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イルミナ インコーポレイテッド
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    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F18/00—Pattern recognition
    • G06F18/20—Analysing
    • G06F18/24—Classification techniques
    • G06F18/241—Classification techniques relating to the classification model, e.g. parametric or non-parametric approaches
    • G06F18/2411—Classification techniques relating to the classification model, e.g. parametric or non-parametric approaches based on the proximity to a decision surface, e.g. support vector machines
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F18/00—Pattern recognition
    • G06F18/20—Analysing
    • G06F18/21—Design or setup of recognition systems or techniques; Extraction of features in feature space; Blind source separation
    • G06F18/213—Feature extraction, e.g. by transforming the feature space; Summarisation; Mappings, e.g. subspace methods
    • G06F18/2135—Feature extraction, e.g. by transforming the feature space; Summarisation; Mappings, e.g. subspace methods based on approximation criteria, e.g. principal component analysis
    • G06F18/21355—Feature extraction, e.g. by transforming the feature space; Summarisation; Mappings, e.g. subspace methods based on approximation criteria, e.g. principal component analysis nonlinear criteria, e.g. embedding a manifold in a Euclidean space
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00—Image analysis
    • G06T7/10—Segmentation; Edge detection
    • G06T7/187—Segmentation; Edge detection involving region growing; involving region merging; involving connected component labelling
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06V—IMAGE OR VIDEO RECOGNITION OR UNDERSTANDING
    • G06V10/00—Arrangements for image or video recognition or understanding
    • G06V10/40—Extraction of image or video features
    • G06V10/50—Extraction of image or video features by performing operations within image blocks; by using histograms, e.g. histogram of oriented gradients [HoG]; by summing image-intensity values; Projection analysis
    • G06V10/507—Summing image-intensity values; Histogram projection analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/30—Unsupervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks

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  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Data Mining & Analysis (AREA)
  • Computer Vision & Pattern Recognition (AREA)
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  • Bioinformatics & Computational Biology (AREA)
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  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
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  • Databases & Information Systems (AREA)
  • Signal Processing (AREA)
  • Molecular Biology (AREA)
  • Multimedia (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Telephonic Communication Services (AREA)
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  • Nuclear Medicine (AREA)
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JP2022580968A 2020-10-27 2021-10-26 クラスターごとの強度補正及びベースコールのためのシステム及び方法 Pending JP2023547298A (ja)

Applications Claiming Priority (3)

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US202063106256P 2020-10-27 2020-10-27
US63/106,256 2020-10-27
PCT/US2021/056711 WO2022093865A1 (en) 2020-10-27 2021-10-26 Systems and methods for per-cluster intensity correction and base calling

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JP2023547298A true JP2023547298A (ja) 2023-11-10
JP2023547298A5 JP2023547298A5 (https=) 2024-12-06

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US (5) US11361194B2 (https=)
EP (2) EP4459625A3 (https=)
JP (1) JP2023547298A (https=)
KR (1) KR20230098097A (https=)
CN (1) CN115803817A (https=)
AU (1) AU2021369495B2 (https=)
CA (1) CA3183529A1 (https=)
IL (1) IL298884A (https=)
MX (1) MX2022016354A (https=)
WO (1) WO2022093865A1 (https=)

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US20220129711A1 (en) 2022-04-28
WO2022093865A1 (en) 2022-05-05
EP4238098C0 (en) 2024-08-21
EP4459625A2 (en) 2024-11-06
CN115803817A (zh) 2023-03-14
IL298884A (en) 2023-02-01
US20240220584A1 (en) 2024-07-04
CA3183529A1 (en) 2022-05-05
US11593595B2 (en) 2023-02-28
EP4238098A1 (en) 2023-09-06
US20230259588A1 (en) 2023-08-17
EP4238098B1 (en) 2024-08-21
AU2021369495B2 (en) 2026-04-02
US12216741B2 (en) 2025-02-04
US11853396B2 (en) 2023-12-26
US20250265313A1 (en) 2025-08-21
MX2022016354A (es) 2023-01-24
AU2021369495A1 (en) 2023-02-02
EP4459625A3 (en) 2025-01-22
US20220300772A1 (en) 2022-09-22
KR20230098097A (ko) 2023-07-03
US11361194B2 (en) 2022-06-14

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