JP2021536635A - 家系エンリッチメント及び家系内の家族ベース解析のための方法及びシステム - Google Patents

家系エンリッチメント及び家系内の家族ベース解析のための方法及びシステム Download PDF

Info

Publication number
JP2021536635A
JP2021536635A JP2021512545A JP2021512545A JP2021536635A JP 2021536635 A JP2021536635 A JP 2021536635A JP 2021512545 A JP2021512545 A JP 2021512545A JP 2021512545 A JP2021512545 A JP 2021512545A JP 2021536635 A JP2021536635 A JP 2021536635A
Authority
JP
Japan
Prior art keywords
affected
individual
enriched
trait
pedigree
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
JP2021512545A
Other languages
English (en)
Japanese (ja)
Other versions
JP2021536635A5 (https=
Inventor
ステープルズ、ジェフリー
ゴンザガ−ハウレギ、クラウディア
リード、ジェフリー
ハベガー、ルーカス
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Regeneron Pharmaceuticals Inc
Original Assignee
Regeneron Pharmaceuticals Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Regeneron Pharmaceuticals Inc filed Critical Regeneron Pharmaceuticals Inc
Publication of JP2021536635A publication Critical patent/JP2021536635A/ja
Publication of JP2021536635A5 publication Critical patent/JP2021536635A5/ja
Withdrawn legal-status Critical Current

Links

Images

Classifications

    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16HHEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H50/00ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics
    • G16H50/80ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics for detecting, monitoring or modelling epidemics or pandemics, e.g. flu
    • GPHYSICS
    • G06COMPUTING OR CALCULATING; COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00Computing arrangements based on biological models
    • G06N3/12Computing arrangements based on biological models using genetic models
    • G06N3/126Evolutionary algorithms, e.g. genetic algorithms or genetic programming
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20Supervised data analysis
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16HHEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/60ICT specially adapted for the handling or processing of patient-related medical or healthcare data for patient-specific data, e.g. for electronic patient records
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

Landscapes

  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Medical Informatics (AREA)
  • Public Health (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Data Mining & Analysis (AREA)
  • Epidemiology (AREA)
  • Primary Health Care (AREA)
  • Biomedical Technology (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Software Systems (AREA)
  • Databases & Information Systems (AREA)
  • Evolutionary Computation (AREA)
  • Artificial Intelligence (AREA)
  • Biotechnology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Mathematical Physics (AREA)
  • Physiology (AREA)
  • Computing Systems (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Computational Linguistics (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Bioethics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Medical Treatment And Welfare Office Work (AREA)
  • Measurement Of The Respiration, Hearing Ability, Form, And Blood Characteristics Of Living Organisms (AREA)
JP2021512545A 2018-09-07 2019-09-06 家系エンリッチメント及び家系内の家族ベース解析のための方法及びシステム Withdrawn JP2021536635A (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201862728536P 2018-09-07 2018-09-07
US62/728,536 2018-09-07
PCT/US2019/049942 WO2020051445A1 (en) 2018-09-07 2019-09-06 Methods and systems for pedigree enrichment and family-based analyses within pedigrees

Publications (2)

Publication Number Publication Date
JP2021536635A true JP2021536635A (ja) 2021-12-27
JP2021536635A5 JP2021536635A5 (https=) 2022-09-13

Family

ID=67997715

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2021512545A Withdrawn JP2021536635A (ja) 2018-09-07 2019-09-06 家系エンリッチメント及び家系内の家族ベース解析のための方法及びシステム

Country Status (11)

Country Link
US (1) US20200082947A1 (https=)
EP (1) EP3847652A1 (https=)
JP (1) JP2021536635A (https=)
KR (1) KR20210055072A (https=)
CN (1) CN113039606A (https=)
AU (1) AU2019335401A1 (https=)
CA (1) CA3109961A1 (https=)
IL (1) IL281176A (https=)
MX (1) MX2021002715A (https=)
SG (1) SG11202101669RA (https=)
WO (1) WO2020051445A1 (https=)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113368247B (zh) * 2021-05-25 2022-02-08 中国人民解放军军事科学院军事医学研究院 一种hoip抑制剂用于制备治疗ii型人毛细血管扩张症药物的应用

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2008018789A2 (en) * 2006-08-08 2008-02-14 Leiden University Medical Center Methods and means for diagnosing and treatment of osteoarthritis
US10347360B2 (en) * 2012-09-14 2019-07-09 Life Technologies Corporation Systems and methods for identifying sequence variation associated with genetic diseases
WO2017172958A1 (en) * 2016-03-29 2017-10-05 Regeneron Pharmaceuticals, Inc. Genetic variant-phenotype analysis system and methods of use
CA3075182A1 (en) 2017-09-07 2019-03-14 Regeneron Pharmaceuticals, Inc. Systems and methods for leveraging relatedness in genomic data analysis

Also Published As

Publication number Publication date
AU2019335401A1 (en) 2021-03-11
MX2021002715A (es) 2021-05-12
CN113039606A (zh) 2021-06-25
IL281176A (en) 2021-04-29
EP3847652A1 (en) 2021-07-14
CA3109961A1 (en) 2020-03-12
WO2020051445A1 (en) 2020-03-12
SG11202101669RA (en) 2021-03-30
KR20210055072A (ko) 2021-05-14
US20200082947A1 (en) 2020-03-12

Similar Documents

Publication Publication Date Title
Ishigaki et al. Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases
Ruhno et al. Complete sequencing of the SMN2 gene in SMA patients detects SMN gene deletion junctions and variants in SMN2 that modify the SMA phenotype
Pagnamenta et al. Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases
Zandi et al. Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal downregulated neuroimmune and synaptic pathways
Liu et al. Focused analysis of exome sequencing data for rare germline mutations in familial and sporadic lung cancer
Loureiro et al. A recurrent SHANK3 frameshift variant in Autism Spectrum Disorder
Ba et al. Surfing the big data wave: omics data challenges in transplantation
Zhang et al. Protein-truncating variant in APOL3 increases chronic kidney disease risk in epistasis with APOL1 risk alleles
Zhang et al. Clinical and genetic features of luscan-lumish syndrome associated with a novel de novo variant of SETD2 gene: Case report and literature review
Kleinle et al. Closing the gap-detection of 5q-spinal muscular atrophy by short-read next-generation sequencing and unexpected results in a diagnostic patient cohort
Epi4K and EPGP Investigators De novo mutations in the classic epileptic encephalopathies
Ning et al. Genetic architectures of the human hippocampus and those involved in neuropsychiatric traits
JP2021536635A (ja) 家系エンリッチメント及び家系内の家族ベース解析のための方法及びシステム
Marshall et al. RNA sequencing resolves novel DYNC2H1 variants causing short‐rib thoracic dysplasia type 3: Case report
Nordeidet et al. Exploring shared genetics between maximal oxygen uptake and disease: the HUNT study
Simpson et al. A novel de novo TP63 mutation in whole‐exome sequencing of a Syrian family with Oral cleft and ectrodactyly
Yu et al. Case Report: Whole exome sequencing identifies compound heterozygous variants in the TRAPPC9 gene in a child with developmental delay
Im et al. A population-specific low-frequency variant of SLC22A12 (p. W258*) explains nearby genome-wide association signals for serum uric acid concentrations among Koreans
Bakker et al. Genetic basis of the circle of Willis characteristics in the healthy and intracranial aneurysm population
Peng et al. Identification of a novel X-linked arginine-vasopressin receptor 2 mutation in nephrogenic diabetes insipidus: case report and pedigree analysis
Dieckmann et al. Quantitative trait locus mapping in placenta: a comparative study of chorionic villus and birth placenta
Yan et al. Bidirectional genetic links between chronic obstructive pulmonary disease and frailty: Genome-wide association study insights
Mallah The Genetics Of Congenital Heart Defects In Saudi Families
Fejzo et al. Multi-ancestry genome-wide association study of severe pregnancy nausea and vomiting
Abdelmageed Evaluation of Medically Actionable Genes in 6,045 Whole Genome Sequencing Data from the Qatar Genome Projects

Legal Events

Date Code Title Description
A621 Written request for application examination

Free format text: JAPANESE INTERMEDIATE CODE: A621

Effective date: 20220808

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20220902

A761 Written withdrawal of application

Free format text: JAPANESE INTERMEDIATE CODE: A761

Effective date: 20230210

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A821

Effective date: 20230210