JP2017049805A - Method, device and program for calculating transportation coefficient - Google Patents

Method, device and program for calculating transportation coefficient Download PDF

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JP2017049805A
JP2017049805A JP2015172542A JP2015172542A JP2017049805A JP 2017049805 A JP2017049805 A JP 2017049805A JP 2015172542 A JP2015172542 A JP 2015172542A JP 2015172542 A JP2015172542 A JP 2015172542A JP 2017049805 A JP2017049805 A JP 2017049805A
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JP6626665B2 (en
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理 日野
Tadashi Hino
理 日野
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Toyo Tire Corp
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Abstract

PROBLEM TO BE SOLVED: To provide a method for calculating a transportation coefficient which reduces computation cost and improves calculation accuracy.SOLUTION: The method for calculating a transportation coefficient includes: a step ST3 for calculating a behavior of a molecule in a balanced state under the predetermined analysis temperature and analysis pressure on the basis of molecular kinetics computation using molecule model data and calculating (k) pieces of time-series data representing a physical quantity corresponding to the transportation coefficient from a time point tto a time point t; a step ST4 for dividing a period from the time point tto the time point tinto (m) (m<k) pieces of groups and calculating (m) pieces of values G(t) [i=1 to m] of auto-correlation functions on the basis of an average value of the physical quantities calculated for each group; steps (ST5 to ST8) for approximating the (m) pieces of values G(t) of auto-correlation functions with an approximation formula including a KWW (Kohlausch-Williams-Watts) function represented by exp{-(t/τ)}, and determining a parameter including τ and β; and a step ST9 for calculating the transportation coefficient by performing time integrating of the approximation formula using the determined parameter.SELECTED DRAWING: Figure 2

Description

本発明は、分子動力学シミュレーションを用いて粘性係数、拡散係数及び熱伝導係数等の輸送係数を算出する方法、装置、及びプログラムに関する。   The present invention relates to a method, an apparatus, and a program for calculating transport coefficients such as a viscosity coefficient, a diffusion coefficient, and a heat conduction coefficient using molecular dynamics simulation.

解析対象となる物質の拡散係数や粘性係数、熱伝導係数などの輸送係数は、揺動散逸定理によれば、分子動力学計算から得られる物理量の自己相関関数を時間積分することにより得られることが知られている。例えば特許文献1では、輸送係数として熱伝導係数を求める例を挙げている。特許文献1では、解析対象となる物質を原子レベルで再現したモデルデータを用いて分子動力学計算を行い、平衡状態の分子の位置及びその挙動を計算する。その計算結果に基づき熱流束の時間変化を表す時系列データを算出し、熱流束の自己相関関数から熱伝導係数を算出する。   According to the fluctuation-dissipation theorem, the transport coefficients such as the diffusion coefficient, viscosity coefficient, and heat conduction coefficient of the material to be analyzed can be obtained by time-integrating the autocorrelation function of the physical quantity obtained from the molecular dynamics calculation. It has been known. For example, Patent Document 1 gives an example of obtaining a heat conduction coefficient as a transport coefficient. In Patent Document 1, molecular dynamics calculation is performed using model data in which a substance to be analyzed is reproduced at an atomic level, and the position of a molecule in an equilibrium state and its behavior are calculated. Based on the calculation result, time series data representing the time change of the heat flux is calculated, and the heat conduction coefficient is calculated from the autocorrelation function of the heat flux.

特許文献2は、輸送係数を算出するにあたり、現実には存在しない寄与が分子動力学計算に混入してしまうことに着目して、これを除去する手段を提案している。除去後の自己相関関数をラプラス変換してフィティング関数とし、指数関数で表現される当該フィティング関数を時間積分することで輸送係数を計算することが記載されている(段落0036参照)。   Patent Document 2 proposes a means for removing this by paying attention to the fact that a contribution that does not actually exist is mixed into the molecular dynamics calculation in calculating the transport coefficient. The post-removal autocorrelation function is Laplace transformed into a fitting function, and the transport coefficient is calculated by time integration of the fitting function expressed by an exponential function (see paragraph 0036).

特開2010−139500号公報JP 2010-139500 A 特開2014−106554号公報JP 2014-106554 A

輸送係数は、物理量の時間相関関数の積分値で与えられる。例えば、せん断応力Pxyとすれば、粘性係数ηは下記式(1)で表現される。kはボルツマン定数、Vは体積、Tは温度である。<…>は自己相関関数を示している。
The transport coefficient is given by an integral value of a time correlation function of a physical quantity. For example, assuming the shear stress Pxy, the viscosity coefficient η is expressed by the following formula (1). k B is the Boltzmann constant, V is the volume, and T is the temperature. <...> indicates an autocorrelation function.

式(1)に示すように、輸送係数の算出には、自己相関関数の値を時点0から無限大∞まで積分する必要がある。しかし、現実には無限時間の計算は不可能であるので、有限時間で計算を打ち切る必要がある。図4に示すように、自己相関関数は、長時間領域にて揺らぎが生じ、この揺らぎが輸送係数の値を算出する精度に影響を与える。図7に示すように、輸送係数の計算を進めると、図中にて四角で示す部分で概ね一定の値に収束し、その後、揺らぎの影響により悪化(decay)する。そこで、自己相関関数の長時間領域での揺らぎの影響を低減するために、図7に示すように、輸送係数(この例は粘性係数)の値の計算を続け、値が概ね一定値に収束し、その後、悪化することを確認できるまで計算を続け、計算を終了する。輸送係数として採用する値は、或る程度一定値に収束した部分の平均値を採用することが考えられる。   As shown in the equation (1), in order to calculate the transport coefficient, it is necessary to integrate the value of the autocorrelation function from time 0 to infinity ∞. However, since infinite time calculation is impossible in reality, it is necessary to terminate the calculation in a finite time. As shown in FIG. 4, the autocorrelation function fluctuates in a long-time region, and this fluctuation affects the accuracy of calculating the value of the transport coefficient. As shown in FIG. 7, when the calculation of the transport coefficient proceeds, it converges to a substantially constant value at the portion indicated by a square in the figure, and then deteriorates due to the influence of fluctuation. Therefore, in order to reduce the influence of fluctuation of the autocorrelation function in the long time region, as shown in FIG. 7, the calculation of the value of the transport coefficient (in this example, the viscosity coefficient) is continued, and the value converges to a substantially constant value. Then, the calculation is continued until it can be confirmed that the condition is deteriorated, and the calculation is terminated. It is conceivable that the average value of the part that has converged to a certain value to some extent is adopted as the value used as the transport coefficient.

しかしながら、上記方法では、自己相関関数の長時間領域での揺らぎの影響を低減するために、輸送係数の値が或る程度収束し、その後悪化することを確認できるまで積分計算を継続しなくてはならず、十分に長い計算時間が必要で、計算コストが大きくなる。   However, in the above method, in order to reduce the influence of fluctuation of the autocorrelation function in the long time region, the integral calculation must be continued until it can be confirmed that the value of the transport coefficient converges to some extent and then deteriorates. In other words, a sufficiently long calculation time is required and the calculation cost is increased.

また、特許文献2のように、自己相関関数の値をラプラス変換して、指数関数で表現されるフィティング関数を用いてフィティングした場合には、指数関数の形状に起因して短時間領域の値を指数関数で精度良く表現できず、その結果、輸送係数の算出精度に影響を与えることが判明した。   Further, as in Patent Document 2, when the value of the autocorrelation function is Laplace transformed and fitting is performed using a fitting function expressed by an exponential function, a short time region is caused due to the shape of the exponential function. It was found that the value of can not be expressed with an exponential function with high accuracy, and as a result, the calculation accuracy of the transport coefficient is affected.

本発明は、このような課題に着目してなされたものであって、その目的は、計算コストを低減するとともに、算出精度を向上させた輸送係数を算出する方法、装置、及びプログラムを提供することである。   The present invention has been made paying attention to such a problem, and an object thereof is to provide a method, an apparatus, and a program for calculating a transportation coefficient with reduced calculation cost and improved calculation accuracy. That is.

本発明は、上記目的を達成するために、次のような手段を講じている。   In order to achieve the above object, the present invention takes the following measures.

すなわち、本発明の輸送係数を算出する方法は、
解析対象となる物質を表す原子モデルデータを用いた分子動力学計算に基づき、予め定めた解析温度及び解析圧力下における平衡状態にある分子の挙動を算出し、輸送係数に対応する物理量を時点tから時点tまで表すk個の時系列データを算出するステップと、
前記時点tから時点tをm個(m<k)のグループに区分し、グループ毎に算出した物理量の平均値に基づきm個の自己相関関数の値を算出するステップと、
前記m個の自己相関関数の値を、exp{−(t/τ)β}で表されるKWW関数(Kohlausch-Williams-Watts)を含む近似式で近似し、τ及びβを含むパラメータを決定するステップと、
決定された前記パラメータを用いて前記近似式を時間積分して輸送係数を算出するステップと、
を含む。
That is, the method of calculating the transport coefficient of the present invention is as follows:
Based on molecular dynamics calculation using atomic model data representing the substance to be analyzed, the behavior of the molecule in an equilibrium state under a predetermined analysis temperature and pressure is calculated, and the physical quantity corresponding to the transport coefficient is calculated at the time t. calculating a k number of time-series data representing 1 to time t k,
Dividing the time point t 1 to time point t k into m groups (m <k), and calculating m autocorrelation function values based on an average value of physical quantities calculated for each group;
The values of the m autocorrelation functions are approximated by an approximate expression including a KWW function (Kohlausch-Williams-Watts) represented by exp {− (t / τ) β }, and parameters including τ and β are determined. And steps to
Calculating the transport coefficient by time-integrating the approximate expression using the determined parameter;
including.

本発明の輸送係数を算出する装置は、
解析対象となる物質を表す原子モデルデータを用いた分子動力学計算に基づき、予め定めた解析温度及び解析圧力下における平衡状態にある分子の挙動を算出し、輸送係数に対応する物理量を時点tから時点tまで表すk個の時系列データを算出する物理量算出部と、
前記時点tから時点tをm個(m<k)のグループに区分し、グループ毎に算出した物理量の平均値に基づきm個の自己相関関数の値を算出する自己相関関数算出部と、
前記m個の自己相関関数の値を、exp{−(t/τ)β}で表されるKWW関数(Kohlausch-Williams-Watts)を含む近似式で近似し、τ及びβを含むパラメータを決定する近似部と、
決定された前記パラメータを用いて前記近似式を時間積分して輸送係数を算出する輸送係数算出部と、
を備える。
The apparatus for calculating the transport coefficient of the present invention is:
Based on molecular dynamics calculation using atomic model data representing the substance to be analyzed, the behavior of the molecule in an equilibrium state under a predetermined analysis temperature and pressure is calculated, and the physical quantity corresponding to the transport coefficient is calculated at the time t. a physical quantity calculation unit for calculating the k pieces of time-series data representing 1 to time t k,
Dividing the time t k from the time t 1 to a group of m (m <k), and the autocorrelation function calculation unit for calculating a value of m of the autocorrelation function based on the average value of the calculated physical quantity for each group ,
The values of the m autocorrelation functions are approximated by an approximate expression including a KWW function (Kohlausch-Williams-Watts) represented by exp {− (t / τ) β }, and parameters including τ and β are determined. An approximation to
A transport coefficient calculation unit that calculates the transport coefficient by time-integrating the approximate expression using the determined parameter;
Is provided.

このように、時点tから時点tをm個(m<k)のグループに区分し、グループ毎に算出した物理量の平均値に基づき自己相関関数の値を算出するので、平均化により長時間領域の揺らぎを抑制でき、揺らぎの影響を確認するために必要以上の時間を計算する必要がないので計算コストを低減することが可能となる。その反面、物理量の平均値を取ることで、時系列データの数が減少するので、線形スケールでの自己相関関数が分からず、ログスケールでの自己相関関数となり、指数関数による近似が必要となる。そこで、近似式としてKWW関数を用いるので、単なる指数関数では表現できない短時間領域を適切に表現でき、計算精度を向上させることができる。したがって、計算コストを低減するとともに、算出精度を向上させることが可能となる。 In this way, the time t 1 to the time tk are divided into m groups (m <k), and the value of the autocorrelation function is calculated based on the average value of the physical quantity calculated for each group. The fluctuation in the time domain can be suppressed, and it is not necessary to calculate more time than necessary to confirm the influence of the fluctuation, so that the calculation cost can be reduced. On the other hand, by taking the average value of physical quantities, the number of time-series data decreases, so the autocorrelation function on the linear scale is unknown, it becomes an autocorrelation function on the log scale, and an approximation with an exponential function is required. . Therefore, since the KWW function is used as an approximate expression, a short time region that cannot be expressed by a simple exponential function can be appropriately expressed, and the calculation accuracy can be improved. Therefore, the calculation cost can be reduced and the calculation accuracy can be improved.

本発明の輸送係数を算出する装置を模式的に示すブロック図。The block diagram which shows typically the apparatus which calculates the transport coefficient of this invention. 本発明の輸送係数を算出する方法を示すフローチャート。The flowchart which shows the method of calculating the transport coefficient of this invention. Multiple-tau相関法で算出した緩和弾性率の時間変化を示す図。The figure which shows the time change of the relaxation elastic modulus computed by the Multiple-tau correlation method. Multiple-tau相関法を用いずにk個の時系列データから算出した自己相関関数の値を示す図。The figure which shows the value of the autocorrelation function calculated from k time series data, without using a Multiple-tau correlation method. 指数関数を重ね合わせた近似式に関する説明図。Explanatory drawing regarding the approximate expression which superimposed the exponential function. KWW関数を重ね合わせた近似式に関する説明図。Explanatory drawing regarding the approximate expression which piled up the KWW function. 従来の平均化により輸送係数を求める方法に関する説明図。Explanatory drawing regarding the method of calculating | requiring a transport coefficient by the conventional averaging.

以下、本発明の一実施形態を、図面を参照して説明する。   Hereinafter, an embodiment of the present invention will be described with reference to the drawings.

[輸送係数を算出する装置]
本実施形態の装置は、予め定めた解析温度及び解析圧力下における解析対象となる物質の輸送係数を、分子動力学シミュレーションを用いて算出する装置である。輸送係数としては、粘性係数、拡散係数及び熱導電率などが挙げられる。本実施形態では、粘性係数を算出する例を用いて説明する。
[Device for calculating transport coefficient]
The apparatus of the present embodiment is an apparatus that calculates a transport coefficient of a substance to be analyzed under a predetermined analysis temperature and pressure using molecular dynamics simulation. Examples of the transport coefficient include a viscosity coefficient, a diffusion coefficient, and a thermal conductivity. In the present embodiment, an example of calculating a viscosity coefficient will be described.

図1に示すように、装置1は、初期設定部10と、分子動力学算出部11と、物理量算出部12と、自己相関関数算出部13と、近似部14と、輸送係数算出部15と、を有する。これら各部10〜15は、CPU、メモリ、各種インターフェイス等を備えたパソコン等の情報処理装置において予め記憶されている図示しない処理ルーチンをCPUが実行することによりソフトウェア及びハードウェアが協働して実現される。   As shown in FIG. 1, the apparatus 1 includes an initial setting unit 10, a molecular dynamics calculation unit 11, a physical quantity calculation unit 12, an autocorrelation function calculation unit 13, an approximation unit 14, and a transport coefficient calculation unit 15. Have. These units 10 to 15 are realized by the cooperation of software and hardware by the CPU executing a processing routine (not shown) stored in advance in an information processing apparatus such as a personal computer having a CPU, memory, various interfaces, and the like. Is done.

図1に示す初期設定部10は、キーボードやマウス等の既知の操作部を介してユーザからの操作を受け付け、解析対象となる物質を表す原子モデルや解析温度、解析圧力など分子動力学計算に必要な設定等の各種設定を実行し、これら設定値をメモリに記憶する。   The initial setting unit 10 shown in FIG. 1 accepts an operation from a user via a known operation unit such as a keyboard and a mouse, and performs molecular dynamics calculation such as an atomic model representing an analysis target substance, an analysis temperature, and an analysis pressure. Various settings such as necessary settings are executed, and these setting values are stored in the memory.

図1に示す分子動力学算出部11は、初期設定部10により設定された原子モデルデータ、解析温度、解析圧力などの各種パラメータを用い、原子モデルの分子動力学計算に基づき平衡状態における各分子モデルの位置に関する時系列データを算出する。これに伴い、図1に示す物理量算出部12は、分子動力学算出部11の算出結果に基づき輸送係数に対応する物理量を時点tから時点tまで表すk個の時系列データを算出する。k個は、原子モデルの挙動を再現する時点の個数であり、解析時間の長さでもある。解析時間の長さは初期設定部10により予め設定される。kが大きいほど、計算時間が長くなる。図1に示すように、算出されたk個の時系列データはメモリに記憶される。輸送係数が粘性係数の場合はせん断応力テンソルとなり、輸送係数が拡散係数の場合は速度となり、輸送係数が熱伝導係数の場合は熱流束となる。 The molecular dynamics calculation unit 11 shown in FIG. 1 uses various parameters such as the atomic model data, analysis temperature, and analysis pressure set by the initial setting unit 10, and each molecule in an equilibrium state based on the molecular dynamics calculation of the atomic model. Calculate time-series data related to the position of the model. Along with this, the physical quantity calculation unit 12 shown in FIG. 1 calculates the k pieces of time-series data representing a physical quantity corresponding to the transport coefficients on the basis of the calculation results of the molecular dynamics calculation part 11 from the time t 1 to time t k . k is the number at the time of reproducing the behavior of the atomic model, and is also the length of the analysis time. The length of the analysis time is preset by the initial setting unit 10. The calculation time becomes longer as k is larger. As shown in FIG. 1, the calculated k time-series data are stored in a memory. When the transport coefficient is a viscosity coefficient, it becomes a shear stress tensor, when the transport coefficient is a diffusion coefficient, it becomes a velocity, and when the transport coefficient is a heat conduction coefficient, it becomes a heat flux.

本字実施形態では、揺動散逸定理に従い、輸送係数は、物理量の時間相関関数の積分値で与えられる。せん断応力Pxyとすれば、粘性係数ηは下記式(1)で表現され、速度vとすれば、拡散係数Dは下記式(2)で表現され、熱流束密度Jとすれば、熱伝導係数λは下記式(3)で表現される。ここで、kはボルツマン定数、Vは体積、Tは温度である。<…>は自己相関関数を示している。


In this embodiment, according to the rocking dissipation theorem, the transport coefficient is given as an integral value of the time correlation function of the physical quantity. If the shear stress Pxy, the viscosity coefficient η is expressed by the following equation (1), if the velocity v, the diffusion coefficient D is expressed by the following equation (2), and if the heat flux density J, the heat conduction coefficient. λ is expressed by the following formula (3). Here, k B is Boltzmann's constant, V is volume, and T is temperature. <...> indicates an autocorrelation function.


図1に示す自己相関関数算出部13は、図1に示すように、前記時点tから時点tをm個(m<k)のグループに分け、グループ毎に物理量の平均値を算出し、当該平均値に基づきm個の自己相関関数の値G(t)を算出する。ただし、i=1〜mである。本実施形態では、Multiple-tau相関法を用いてm個の自己相関関数の値(例えば応力緩和時系列データ)を算出している。勿論、物理量を何らかの手法により平均化する手法であれば、Multiple-tau相関法に限定されない。例えば、最大エントロピー法、ブロックアベレージ法などが挙げられる。なお、図1のメモリに、物理量の時系列データ(k個)から平均値を求め、m個の自己相関関数の値を算出する様子を模式的に示しているが、これは理解を容易にするための説明図であり、厳密ではない。 Autocorrelation function calculation unit 13 shown in FIG. 1, as shown in FIG. 1, divided time t k from the time t 1 to a group of m (m <k), calculates the average value of the physical quantity for each group Based on the average value, m autocorrelation function values G (t i ) are calculated. However, i = 1 to m. In the present embodiment, m autocorrelation function values (for example, stress relaxation time series data) are calculated using the Multiple-tau correlation method. Of course, the method is not limited to the multiple-tau correlation method as long as the physical quantity is averaged by some method. For example, the maximum entropy method, the block average method, etc. are mentioned. In addition, although the average value is calculated from the time-series data (k pieces) of the physical quantity and the m autocorrelation function values are calculated in the memory of FIG. 1, this is schematically shown. It is explanatory drawing for doing, and is not exact.

図1に示す近似部14は、自己相関関数算出部13が算出した自己相関関数の値G(t)を、exp{−(t/τ)β}で表されるKWW関数(Kohlausch-Williams-Watts)を含む近似式で近似し、τ及びβを含むパラメータを決定する。 1 approximates the autocorrelation function value G (t i ) calculated by the autocorrelation function calculation unit 13 to a KWW function (Kohlausch-Williams) expressed by exp {− (t / τ) β }. Approximation with an approximate expression including -Watts) and determining parameters including τ and β.

本実施形態では、次のように決定している。
近似式は、N個のKWW関数の重ね合わせ展開式である式(4)で表現される。
In the present embodiment, the determination is made as follows.
The approximate expression is expressed by Expression (4) which is a superposition expansion expression of N KWW functions.

まず、近似部14は、N=1として、最小二乗法によってパラメータa、τ、β(i=1〜N)を決定する。具体的には、応力緩和時系列データ(m個の自己相関関数の値)に対する二乗誤差の総和Δが最小となるように、パラメータa、τ、β(i=1〜N)を決定する。前記総和Δは式(5)で表される。
First, the approximation unit 14 determines parameters a i , τ i , and β i (i = 1 to N) by the least square method with N = 1. Specifically, the parameters a i , τ i , β i (i = 1 to N) so that the sum of square errors Δ 2 with respect to the stress relaxation time series data (m autocorrelation function values) is minimized. To decide. The total sum Δ 2 is expressed by equation (5).

次に、近似部14は、決定したパラメータa、τ、β及び近似式(4)で算出される値と、m個の自己相関関数の値との誤差が所定の許容値以下となるまで、Nを1ずつ大きくして最小二乗法によるパラメータa、τ、βの決定を繰り返す。
具体的には、展開式の長さNは、N=1から始めて、式(6)が満たされるまで1ずつ増やしている。

式(6)は、一致度Rが99.9%以上であればよいことを示している。誤差としては、0.1%以下である。所定の許容値に対応する値0.999は、予め初期設定部10を介して設定される。なお、本実施形態では、N=3で式(6)の条件を満たした。
Next, the approximation unit 14 determines that an error between the determined parameters a i , τ i , β i and the approximate expression (4) and the values of the m autocorrelation functions is equal to or less than a predetermined allowable value. Until it becomes, N is increased by 1, and the determination of the parameters a i , τ i , and β i by the least square method is repeated.
Specifically, the length N of the expansion formula starts from N = 1 and increases by 1 until the formula (6) is satisfied.

Equation (6) indicates that the degree of coincidence R 2 only needs to be 99.9% or more. The error is 0.1% or less. A value 0.999 corresponding to the predetermined allowable value is set in advance via the initial setting unit 10. In the present embodiment, N = 3 and the condition of Expression (6) is satisfied.

図1に示す輸送係数算出部15は、決定されたパラメータを用いて近似式を時間積分し、輸送係数を算出する。粘性係数であれば、式(7)で表される。Γはガンマ関数を示す。パラメータa、τ、β、Nは、近似部14により決定されている。
The transport coefficient calculation unit 15 shown in FIG. 1 calculates the transport coefficient by time-integrating the approximate expression using the determined parameters. If it is a viscosity coefficient, it represents with Formula (7). Γ represents a gamma function. The parameters a i , τ i , β i , and N are determined by the approximation unit 14.

本実施形態の効果を示すために、液体スチレンの粘性係数を算出した。   In order to show the effect of this embodiment, the viscosity coefficient of liquid styrene was calculated.

1)図3は、本実施形態の方法(Multiple-tau相関法)で緩和弾性率の時間変化を算出した図である。図4は、Multiple-tau相関法を用いずにk個の時系列データから自己相関関数の値を算出した図である。図4には、長時間領域において生じる揺らぎが存在するが、図3では揺らぎが低減されていることが分かる。なお、緩和弾性率は自己相関関数の値にV/kTを乗じて算出されるので、図4の値にV/kTを乗じれば、図3と図4は比較可能になる。 1) FIG. 3 is a diagram in which the change in relaxation elastic modulus with time is calculated by the method of the present embodiment (Multiple-tau correlation method). FIG. 4 is a diagram in which the value of the autocorrelation function is calculated from k pieces of time-series data without using the Multiple-tau correlation method. In FIG. 4, fluctuations that occur in the long time region exist, but in FIG. 3, it can be seen that the fluctuations are reduced. Incidentally, the relaxation modulus is because it is calculated by multiplying the V / k B T of the value of the autocorrelation function, be multiplied to V / k B T of the value of FIG. 4, FIG. 3 and FIG. 4 is a comparable .

2)図5は、本実施形態の方法(Multiple-tau相関法)で算出した緩和弾性率の時間変化(応力緩和)を、指数関数を重ね合わせた近似式で近似した値を示す図である。指数関数は、exp{−(t/τ)}である。指数関数の重ね合わせの数を3つとした。図6は、本実施形態の方法(Multiple-tau相関法)で算出した緩和弾性率の時間変化(応力緩和)を、KWW関数を重ね合わせた近似式で近似した図である。KWW関数の重ね合わせの数を3つとした。図5において、短時間領域では、近似式と応力緩和の値の誤差が大きく、近似式が適切とはいえないことが分かる。図6は、図5に比べて、近似式と応力緩和の値の誤差が小さく、近似式が適切といえる。   2) FIG. 5 is a diagram showing a value obtained by approximating the time change (stress relaxation) of the relaxation elastic modulus calculated by the method of the present embodiment (Multiple-tau correlation method) with an approximate expression in which exponential functions are superimposed. . The exponential function is exp {− (t / τ)}. The number of exponential superpositions was three. FIG. 6 is a diagram in which the time change (stress relaxation) of the relaxation modulus calculated by the method of the present embodiment (Multiple-tau correlation method) is approximated by an approximate expression in which the KWW function is superimposed. The number of superpositions of the KWW function was three. In FIG. 5, it can be seen that in the short-time region, the error between the approximate expression and the stress relaxation value is large, and the approximate expression is not appropriate. In FIG. 6, the error between the approximate expression and the stress relaxation value is smaller than in FIG. 5, and it can be said that the approximate expression is appropriate.

3)図7は、粘性係数を、式(1)の時間積分により算出した図である。図中に示すように、粘性係数の値が概ね一定値に収束し、その後、悪化することを確認できるまで計算を続け、計算を終了する。計算時間は、時点5.E+04まで計算した。粘性係数は、値が収束したと考えられる箇所(図中の四角)部分の平均値を採用した。   3) FIG. 7 is a diagram in which the viscosity coefficient is calculated by time integration of Equation (1). As shown in the figure, the calculation is continued until it can be confirmed that the value of the viscosity coefficient has converged to a substantially constant value and then deteriorated, and the calculation is terminated. The calculation time is 5. Calculated to E + 04. For the viscosity coefficient, the average value of the portion (square in the figure) where the value is considered to have converged was adopted.

4)液体スチレンの粘性係数の算出値及び計算時間は、次の通りである。
実験値:696μPaS
図7に示す平均値を用いた方法:707μPaS;計算時間5.E+04
図5に示す指数関数を用いた近似式:729μPaS;計算時間1.E+04
図6に示すKWW関数を用いた近似式:692μPaS;計算時間1.E+04
上記の通り、図7の従来方法は、実験値に対して或る程度の精度で輸送係数を算出できるが、計算コストが高いというデメリットが存在する。
図5に示す方法は、計算コストが少なく好ましいが、短時間領域の物理量を近似式でうまく表現できていないために、輸送係数の算出精度が悪い。
図6に示す方法は、計算コストが少なく、更に、輸送係数の算出精度が他の方法に比して高い。これは、Multiple-tau相関法による平均化の効果で長時間領域の揺らぎが低減し、更に、短時間領域の値を近似式で適切に表現できているためと考えられる。
したがって、本実施形態の方法であれば、計算コストの低減と、算出精度の向上とを両立することができることが理解できる。本実施形態では、計算誤差を5%から1%に低減し、計算時間を約5分の1に低減している。
4) The calculated value and calculation time of the viscosity coefficient of liquid styrene are as follows.
Experimental value: 696 μPaS
7. Method using average value shown in FIG. 7: 707 μPaS; calculation time E + 04
Approximate expression using exponential function shown in FIG. E + 04
Approximate expression using KWW function shown in FIG. 6: 692 μPaS; E + 04
As described above, the conventional method of FIG. 7 can calculate the transport coefficient with a certain degree of accuracy with respect to the experimental value, but has a demerit that the calculation cost is high.
The method shown in FIG. 5 is preferable because the calculation cost is low, but the physical quantity in the short-time region cannot be expressed well by the approximate expression, so the calculation accuracy of the transport coefficient is poor.
The method shown in FIG. 6 has a low calculation cost, and the calculation accuracy of the transport coefficient is higher than other methods. This is considered to be because fluctuations in the long-time region are reduced by the effect of averaging by the Multiple-tau correlation method, and furthermore, the value in the short-time region can be appropriately expressed by an approximate expression.
Therefore, it can be understood that the method of the present embodiment can achieve both reduction in calculation cost and improvement in calculation accuracy. In this embodiment, the calculation error is reduced from 5% to 1%, and the calculation time is reduced to about 1/5.

[輸送係数を算出する方法]
上記装置1を用いた輸送係数を算出する方法について、図2を用いて説明する。
[Method of calculating transport coefficient]
A method for calculating the transport coefficient using the apparatus 1 will be described with reference to FIG.

まず、ステップST1において、図1に示す初期設定部10は、解析対象となる物質を表す原子モデルや解析温度、解析圧力など分子動力学計算に必要な設定等の各種設定を実行し、これら設定値をメモリに記憶する。   First, in step ST1, the initial setting unit 10 shown in FIG. 1 executes various settings such as an atomic model representing a substance to be analyzed, settings necessary for molecular dynamics calculation such as analysis temperature and analysis pressure, and the like. Store the value in memory.

次のステップST2において、図1に示す分子動力学算出部11は、予め設定された各種パラメータを用い、原子モデルの分子動力学計算に基づき平衡状態にある各分子モデルの位置に関する時系列データを算出する。これに伴い、図1に示す物理量算出部12は、ステップST3において、分子動力学計算の算出結果に基づき輸送係数に対応する物理量(本実施形態ではせん断応力テンソル)を時点tから時点tまで表すk個の時系列データを算出する。 In the next step ST2, the molecular dynamics calculation unit 11 shown in FIG. 1 uses time-series data relating to the position of each molecular model in an equilibrium state based on the molecular dynamics calculation of the atomic model using various preset parameters. calculate. Along with this, the physical quantity calculation unit 12 shown in FIG. 1, at step ST3, the molecular dynamics calculation time t k from the time t 1 (shear stress tensor in the present embodiment) physical quantity corresponding to the basis transport coefficients on the calculation result of K time-series data expressed up to are calculated.

次のステップST4において、図1に示す自己相関関数算出部13は、時点tから時点tをm個(m<k)のグループに区分し、グループ毎に算出した物理量の平均値に基づきm個の自己相関関数の値を算出する。本実施形態では、Multiple-tau相関法を用いているが、これに限定されない。例えば、最大エントロピー法、又はブロックアベレージ法が利用可能である。 In the next step ST4, the autocorrelation function calculating section 13 shown in FIG. 1 divides the time t k from the time point t 1 to a group of m (m <k), based on the average value of the calculated physical quantity for each group The value of m autocorrelation functions is calculated. In the present embodiment, the Multiple-tau correlation method is used, but the present invention is not limited to this. For example, the maximum entropy method or the block average method can be used.

ステップST5〜8において、図1に示す近似部14は、m個の自己相関関数の値G(t)を、exp{−(t/τ)β}で表されるKWW関数(Kohlausch-Williams-Watts)を含む近似式で近似し、τ及びβを含むパラメータを決定する。 In steps ST5 to ST8, the approximating unit 14 shown in FIG. 1 converts the m autocorrelation function values G (t i ) into a KWW function (Kohlausch-Williams) expressed by exp {− (t / τ) β }. Approximation with an approximate expression including -Watts) and determining parameters including τ and β.

具体的には、ステップST5において、近似部14は、N=1とする。次のステップST6において、近似部14は、最小二乗法を用いて、m個の自己相関関数の値G(t)を式(4)で近似し、パラメータa、τ、β(i=1〜N)を決定する。次のステップST7において、近似部14は、決定したパラメータa、τ、β及び近似式(4)で算出される値と、m個の自己相関関数の値との誤差が所定の許容値以下であるかを判定する。ステップST7において、誤差が所定の許容値以下であると判断されるまで(ST7:NO)、Nを1ずつ大きくし(ST8)、ステップST6を繰り返す。勿論、このようにNを徐々に増大させて検証する方法を採用せずに、複数のKWW関数を重ね合わた近似式を定義しておいてもよい。 Specifically, in step ST5, the approximation unit 14 sets N = 1. In the next step ST6, the approximating unit 14 approximates the m autocorrelation function values G (t i ) by the equation (4) using the least square method, and parameters a i , τ i , β i ( i = 1 to N) is determined. In the next step ST7, the approximating unit 14 determines that an error between the determined parameters a i , τ i , β i and the value calculated by the approximate expression (4) and the values of the m autocorrelation functions is a predetermined tolerance. Determine if it is less than or equal to the value. In step ST7, N is increased by 1 (ST8) until it is determined that the error is equal to or smaller than a predetermined allowable value (ST7: NO), and step ST6 is repeated. Of course, instead of adopting the method of verifying by gradually increasing N in this way, an approximate expression in which a plurality of KWW functions are superimposed may be defined.

ステップST7において、誤差が所定の許容値以下であると判断されると(ST7:YES)、次のステップST9において、輸送係数算出部15は、決定されたパラメータa、τ、βを用いて近似式(4)を時間積分して輸送係数を算出する。なお、近似式(4)を時間積分した式は(7)である。 If it is determined in step ST7 that the error is equal to or less than a predetermined allowable value (ST7: YES), in the next step ST9, the transport coefficient calculation unit 15 uses the determined parameters a i , τ i , β i . The approximate expression (4) is integrated using time to calculate the transport coefficient. Note that the expression obtained by integrating the approximate expression (4) with time is (7).

以上のように、本実施形態の輸送係数を算出する方法は、
解析対象となる物質を表す原子モデルデータを用いた分子動力学計算に基づき、予め定めた解析温度及び解析圧力下における平衡状態にある分子の挙動を算出し、輸送係数に対応する物理量を時点tから時点tまで表すk個の時系列データを算出するステップST3と、
時点tから時点tをm個(m<k)のグループに区分し、グループ毎に算出した物理量の平均値に基づきm個の自己相関関数の値G(t)[i=1〜m]を算出するステップST4と、
m個の自己相関関数の値G(t)を、exp{−(t/τ)β}で表されるKWW関数(Kohlausch-Williams-Watts)を含む近似式で近似し、τ及びβを含むパラメータを決定するステップ(ST5〜8)と、
決定されたパラメータを用いて近似式を時間積分して輸送係数を算出するステップST9と、
を含む。
As described above, the method for calculating the transport coefficient of this embodiment is as follows.
Based on molecular dynamics calculation using atomic model data representing the substance to be analyzed, the behavior of the molecule in an equilibrium state under a predetermined analysis temperature and pressure is calculated, and the physical quantity corresponding to the transport coefficient is calculated at the time t. a step ST3 for calculating the k pieces of time-series data representing 1 to time t k,
The time point t 1 to the time point tk are divided into m groups (m <k), and m autocorrelation function values G (t i ) [i = 1 to 1) based on the average value of physical quantities calculated for each group. m] for calculating ST],
The value G (t i ) of m autocorrelation functions is approximated by an approximate expression including a KWW function (Kohlausch-Williams-Watts) represented by exp {− (t / τ) β }. Determining parameters to include (ST5-8);
Step ST9 for calculating the transport coefficient by time integrating the approximate expression using the determined parameters;
including.

本実施形態の輸送係数を算出する装置は、
解析対象となる物質を表す原子モデルデータを用いた分子動力学計算に基づき、予め定めた解析温度及び解析圧力下における平衡状態にある分子の挙動を算出し、輸送係数に対応する物理量を時点tから時点tまで表すk個の時系列データを算出する物理量算出部12と、
前記時点tから時点tをm個(m<k)のグループに区分し、グループ毎に算出した物理量の平均値に基づきm個の自己相関関数の値G(t)[i=1〜m]を算出する自己相関関数算出部13と、
前記m個の自己相関関数の値G(t)を、exp{−(t/τ)β}で表されるKWW関数(Kohlausch-Williams-Watts)を含む近似式で近似し、τ及びβを含むパラメータを決定する近似部14と、
決定されたパラメータを用いて近似式を時間積分して輸送係数を算出する輸送係数算出部15と、
を備える。
The apparatus for calculating the transport coefficient of this embodiment is
Based on molecular dynamics calculation using atomic model data representing the substance to be analyzed, the behavior of the molecule in an equilibrium state under a predetermined analysis temperature and pressure is calculated, and the physical quantity corresponding to the transport coefficient is calculated at the time t. a physical quantity calculation unit 12 for calculating the k pieces of time-series data representing 1 to time t k,
The time points t 1 to t k are divided into m groups (m <k), and m autocorrelation function values G (t i ) [i = 1] based on the average value of physical quantities calculated for each group. ~ M], an autocorrelation function calculation unit 13;
The m autocorrelation function values G (t i ) are approximated by an approximate expression including a KWW function (Kohlausch-Williams-Watts) represented by exp {− (t / τ) β }, and τ and β An approximation unit 14 for determining parameters including
A transport coefficient calculation unit 15 that calculates the transport coefficient by time-integrating the approximate expression using the determined parameters;
Is provided.

このように、時点tから時点tをm個(m<k)のグループに区分し、グループ毎に算出した物理量の平均値に基づき自己相関関数の値G(t)[i=1〜m]を算出するので、平均化により長時間領域の揺らぎを抑制でき、揺らぎの影響を確認するために必要以上の時間を計算する必要がないので計算コストを低減することが可能となる。その反面、物理量の平均値を取ることで、時系列データの数が減少するので、線形スケールでの自己相関関数が分からず、ログスケールでの自己相関関数となり、指数関数による近似が必要となる。そこで、近似式としてKWW関数を用いるので、単なる指数関数では表現できない短時間領域を適切に表現でき、計算精度を向上させることができる。したがって、計算コストを低減するとともに、算出精度を向上させることが可能となる。 In this way, the time point t 1 to the time point tk are divided into m groups (m <k), and the autocorrelation function value G (t i ) [i = 1] based on the average value of the physical quantities calculated for each group. ˜m] is calculated, it is possible to suppress fluctuations in the long-time region by averaging, and it is not necessary to calculate more time than necessary in order to confirm the influence of fluctuations, so that the calculation cost can be reduced. On the other hand, by taking the average value of physical quantities, the number of time-series data decreases, so the autocorrelation function on the linear scale is unknown, it becomes an autocorrelation function on the log scale, and an approximation with an exponential function is required. . Therefore, since the KWW function is used as an approximate expression, a short time region that cannot be expressed by a simple exponential function can be appropriately expressed, and the calculation accuracy can be improved. Therefore, the calculation cost can be reduced and the calculation accuracy can be improved.

本実施形態では、自己相関関数の値G(t)は、Multiple-tau相関法、最大エントロピー法、又はブロックアベレージ法を用いて算出する。 In the present embodiment, the autocorrelation function value G (t i ) is calculated using a multiple-tau correlation method, a maximum entropy method, or a block average method.

本実施形態では、近似式は、式(4)で表され、
N=1として、最小二乗法によってパラメータa、τ、β(i=1〜N)を決定し、
決定したパラメータa、τ、β及び前記近似式で算出される値G’(t)と、前記m個の自己相関関数の値との誤差が所定の許容値以下となるまで、Nを1ずつ大きくして、前記最小二乗法によるパラメータa、τ、βの決定を繰り返す。
In the present embodiment, the approximate expression is expressed by Expression (4),
N = 1, parameters a i , τ i , β i (i = 1 to N) are determined by the least square method,
Until the error between the determined parameters a i , τ i , β i and the value G ′ (t) calculated by the approximate expression and the values of the m autocorrelation functions is equal to or less than a predetermined allowable value, N Is increased by 1 and the determination of the parameters a i , τ i , and β i by the least square method is repeated.

この方法によれば、近似式の展開数を増大させて、誤差が所定の許容値以下にしているので、近似の精度が目標の許容値を満たし、その結果、輸送係数の精度を更に向上させることが可能となる。   According to this method, the number of expansions of the approximate expression is increased so that the error is less than or equal to a predetermined allowable value. Therefore, the accuracy of the approximation satisfies the target allowable value, and as a result, the accuracy of the transport coefficient is further improved. It becomes possible.

本実施形態のプログラムは、上記方法を構成する各ステップをコンピュータに実行させるプログラムである。このプログラムを実行することによっても、上記方法の奏する作用効果を得ることが可能となる。言い換えると、上記算出方法を使用しているともいえる。   The program of the present embodiment is a program that causes a computer to execute each step constituting the above method. By executing this program, it is possible to obtain the operational effects of the above method. In other words, it can be said that the above calculation method is used.

以上、本発明の実施形態について図面に基づいて説明したが、具体的な構成は、これらの実施形態に限定されるものでないと考えられるべきである。本発明の範囲は、上記した実施形態の説明だけではなく特許請求の範囲によって示され、さらに特許請求の範囲と均等の意味および範囲内でのすべての変更が含まれる。   As mentioned above, although embodiment of this invention was described based on drawing, it should be thought that a specific structure is not limited to these embodiment. The scope of the present invention is shown not only by the above description of the embodiments but also by the scope of claims for patent, and further includes all modifications within the meaning and scope equivalent to the scope of claims for patent.

例えば、図1に示す各部10〜15は、所定プログラムをコンピュータのCPUで実行することで実現しているが、各部を専用メモリや専用回路で構成してもよい。   For example, each of the units 10 to 15 illustrated in FIG. 1 is realized by executing a predetermined program by a CPU of a computer, but each unit may be configured by a dedicated memory or a dedicated circuit.

上記の各実施形態で採用している構造を他の任意の実施形態に採用することは可能である。各部の具体的な構成は、上述した実施形態のみに限定されるものではなく、本発明の趣旨を逸脱しない範囲で種々変形が可能である。   The structure employed in each of the above embodiments can be employed in any other embodiment. The specific configuration of each unit is not limited to the above-described embodiment, and various modifications can be made without departing from the spirit of the present invention.

11…分子動力学算出部
12…物理量算出部
13…自己相関関数算出部
14…近似部
15…輸送係数算出部
DESCRIPTION OF SYMBOLS 11 ... Molecular dynamics calculation part 12 ... Physical quantity calculation part 13 ... Autocorrelation function calculation part 14 ... Approximation part 15 ... Transport coefficient calculation part

Claims (7)

解析対象となる物質を表す原子モデルデータを用いた分子動力学計算に基づき、予め定めた解析温度及び解析圧力下における平衡状態にある分子の挙動を算出し、輸送係数に対応する物理量を時点tから時点tまで表すk個の時系列データを算出するステップと、
前記時点tから時点tをm個(m<k)のグループに区分し、グループ毎に算出した物理量の平均値に基づきm個の自己相関関数の値を算出するステップと、
前記m個の自己相関関数の値を、exp{−(t/τ)β}で表されるKWW関数(Kohlausch-Williams-Watts)を含む近似式で近似し、τ及びβを含むパラメータを決定するステップと、
決定された前記パラメータを用いて前記近似式を時間積分して輸送係数を算出するステップと、
を含む、輸送係数を算出する方法。
Based on molecular dynamics calculation using atomic model data representing the substance to be analyzed, the behavior of the molecule in an equilibrium state under a predetermined analysis temperature and pressure is calculated, and the physical quantity corresponding to the transport coefficient is calculated at the time t. calculating a k number of time-series data representing 1 to time t k,
Dividing the time point t 1 to time point t k into m groups (m <k), and calculating m autocorrelation function values based on an average value of physical quantities calculated for each group;
The values of the m autocorrelation functions are approximated by an approximate expression including a KWW function (Kohlausch-Williams-Watts) represented by exp {− (t / τ) β }, and parameters including τ and β are determined. And steps to
Calculating the transport coefficient by time-integrating the approximate expression using the determined parameter;
A method for calculating a transportation coefficient including:
前記自己相関関数の値は、Multiple-tau相関法、最大エントロピー法、又はブロックアベレージ法を用いて算出する、請求項1に記載の方法。   The method according to claim 1, wherein the value of the autocorrelation function is calculated using a multiple-tau correlation method, a maximum entropy method, or a block average method. 前記近似式は、式(4)で表され、

N=1として、最小二乗法によってパラメータa、τ、β(i=1〜N)を決定し、
決定したパラメータa、τ、β及び前記近似式で算出される値G’(t)と、前記m個の自己相関関数の値との誤差が所定の許容値以下となるまで、Nを1ずつ大きくして、前記最小二乗法によるパラメータa、τ、βの決定を繰り返す、請求項1又は2に記載の方法。
The approximate expression is expressed by Expression (4),

N = 1, parameters a i , τ i , β i (i = 1 to N) are determined by the least square method,
Until the error between the determined parameters a i , τ i , β i and the value G ′ (t) calculated by the approximate expression and the values of the m autocorrelation functions is equal to or less than a predetermined allowable value, N The method according to claim 1, wherein the parameter a i , τ i , and β i are repeatedly determined by increasing the value by 1 and the least square method.
解析対象となる物質を表す原子モデルデータを用いた分子動力学計算に基づき、予め定めた解析温度及び解析圧力下における平衡状態にある分子の挙動を算出し、輸送係数に対応する物理量を時点tから時点tまで表すk個の時系列データを算出する物理量算出部と、
前記時点tから時点tをm個(m<k)のグループに区分し、グループ毎に算出した物理量の平均値に基づきm個の自己相関関数の値を算出する自己相関関数算出部と、
前記m個の自己相関関数の値を、exp{−(t/τ)β}で表されるKWW関数(Kohlausch-Williams-Watts)を含む近似式で近似し、τ及びβを含むパラメータを決定する近似部と、
決定された前記パラメータを用いて前記近似式を時間積分して輸送係数を算出する輸送係数算出部と、
を備える、輸送係数を算出する装置。
Based on molecular dynamics calculation using atomic model data representing the substance to be analyzed, the behavior of the molecule in an equilibrium state under a predetermined analysis temperature and pressure is calculated, and the physical quantity corresponding to the transport coefficient is calculated at the time t. a physical quantity calculation unit for calculating the k pieces of time-series data representing 1 to time t k,
Dividing the time t k from the time t 1 to a group of m (m <k), and the autocorrelation function calculation unit for calculating a value of m of the autocorrelation function based on the average value of the calculated physical quantity for each group ,
The values of the m autocorrelation functions are approximated by an approximate expression including a KWW function (Kohlausch-Williams-Watts) represented by exp {− (t / τ) β }, and parameters including τ and β are determined. An approximation to
A transport coefficient calculation unit that calculates the transport coefficient by time-integrating the approximate expression using the determined parameter;
An apparatus for calculating a transport coefficient.
前記自己相関関数の値は、Multiple-tau相関法、最大エントロピー法、又はブロックアベレージ法を用いて算出する、請求項4に記載の装置。   The apparatus according to claim 4, wherein the value of the autocorrelation function is calculated using a multiple-tau correlation method, a maximum entropy method, or a block average method. 前記近似式は、式(4)で表され、

前記近似部は、N=1として、最小二乗法によってパラメータa、τ、β(i=1〜N)を決定し、
決定したパラメータa、τ、β及び前記近似式で算出される値G’(t)と、前記m個の自己相関関数の値との誤差が所定の許容値以下となるまで、Nを1ずつ大きくして、前記最小二乗法によるパラメータa、τ、βの決定を繰り返す、請求項4又は5に記載の装置。
The approximate expression is expressed by Expression (4),

The approximation unit determines parameters a i , τ i , and β i (i = 1 to N) by the least square method with N = 1,
Until the error between the determined parameters a i , τ i , β i and the value G ′ (t) calculated by the approximate expression and the values of the m autocorrelation functions is equal to or less than a predetermined allowable value, N 6 is increased by 1, and the determination of the parameters a i , τ i , and β i by the least square method is repeated.
請求項1〜3のいずれかに記載の方法をコンピュータに実行させるプログラム。   The program which makes a computer perform the method in any one of Claims 1-3.
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