IL305346A - Antibodies that bind cd123 and gamma-delta t cell receptors - Google Patents
Antibodies that bind cd123 and gamma-delta t cell receptorsInfo
- Publication number
- IL305346A IL305346A IL305346A IL30534623A IL305346A IL 305346 A IL305346 A IL 305346A IL 305346 A IL305346 A IL 305346A IL 30534623 A IL30534623 A IL 30534623A IL 305346 A IL305346 A IL 305346A
- Authority
- IL
- Israel
- Prior art keywords
- seq
- set forth
- sequence set
- antigen
- antibody
- Prior art date
Links
- 102000011778 gamma-delta T-Cell Antigen Receptors Human genes 0.000 title description 4
- 108010062214 gamma-delta T-Cell Antigen Receptors Proteins 0.000 title description 4
- 230000027455 binding Effects 0.000 claims description 291
- 239000000427 antigen Substances 0.000 claims description 211
- 108091007433 antigens Proteins 0.000 claims description 210
- 102000036639 antigens Human genes 0.000 claims description 210
- 210000004027 cell Anatomy 0.000 claims description 113
- 241000282414 Homo sapiens Species 0.000 claims description 79
- 102100035360 Cerebellar degeneration-related antigen 1 Human genes 0.000 claims description 54
- 210000001744 T-lymphocyte Anatomy 0.000 claims description 51
- 108090000765 processed proteins & peptides Proteins 0.000 claims description 47
- 102000004196 processed proteins & peptides Human genes 0.000 claims description 45
- 229920001184 polypeptide Polymers 0.000 claims description 38
- 102100035361 Cerebellar degeneration-related protein 2 Human genes 0.000 claims description 37
- 101000737796 Homo sapiens Cerebellar degeneration-related protein 2 Proteins 0.000 claims description 37
- 235000001014 amino acid Nutrition 0.000 claims description 37
- 101100112922 Candida albicans CDR3 gene Proteins 0.000 claims description 36
- 101000737793 Homo sapiens Cerebellar degeneration-related antigen 1 Proteins 0.000 claims description 35
- 101000998120 Homo sapiens Interleukin-3 receptor subunit alpha Proteins 0.000 claims description 30
- 102000052088 human IL3RA Human genes 0.000 claims description 30
- 108010003723 Single-Domain Antibodies Proteins 0.000 claims description 25
- 150000001413 amino acids Chemical class 0.000 claims description 22
- 101710117290 Aldo-keto reductase family 1 member C4 Proteins 0.000 claims description 19
- 238000006467 substitution reaction Methods 0.000 claims description 19
- 230000035772 mutation Effects 0.000 claims description 18
- 125000003275 alpha amino acid group Chemical group 0.000 claims description 15
- 108020004707 nucleic acids Proteins 0.000 claims description 11
- 102000039446 nucleic acids Human genes 0.000 claims description 11
- 150000007523 nucleic acids Chemical class 0.000 claims description 11
- 230000002147 killing effect Effects 0.000 claims description 10
- 206010028980 Neoplasm Diseases 0.000 claims description 8
- 230000015572 biosynthetic process Effects 0.000 claims description 7
- 239000008194 pharmaceutical composition Substances 0.000 claims description 7
- 239000000546 pharmaceutical excipient Substances 0.000 claims description 7
- 108091008874 T cell receptors Proteins 0.000 claims description 6
- 102000016266 T-Cell Antigen Receptors Human genes 0.000 claims description 6
- 201000011510 cancer Diseases 0.000 claims description 4
- 239000003814 drug Substances 0.000 claims description 4
- 239000000833 heterodimer Substances 0.000 claims description 4
- 210000003719 b-lymphocyte Anatomy 0.000 claims description 3
- 239000002773 nucleotide Substances 0.000 claims description 3
- 125000003729 nucleotide group Chemical group 0.000 claims description 3
- 208000025324 B-cell acute lymphoblastic leukemia Diseases 0.000 claims description 2
- 208000010839 B-cell chronic lymphocytic leukemia Diseases 0.000 claims description 2
- 208000032791 BCR-ABL1 positive chronic myelogenous leukemia Diseases 0.000 claims description 2
- 208000010833 Chronic myeloid leukaemia Diseases 0.000 claims description 2
- 208000017604 Hodgkin disease Diseases 0.000 claims description 2
- 208000021519 Hodgkin lymphoma Diseases 0.000 claims description 2
- 208000010747 Hodgkins lymphoma Diseases 0.000 claims description 2
- 208000031422 Lymphocytic Chronic B-Cell Leukemia Diseases 0.000 claims description 2
- 208000030289 Lymphoproliferative disease Diseases 0.000 claims description 2
- 201000003793 Myelodysplastic syndrome Diseases 0.000 claims description 2
- 208000033761 Myelogenous Chronic BCR-ABL Positive Leukemia Diseases 0.000 claims description 2
- 208000035269 cancer or benign tumor Diseases 0.000 claims description 2
- 230000001684 chronic effect Effects 0.000 claims description 2
- 208000032852 chronic lymphocytic leukemia Diseases 0.000 claims description 2
- 125000000151 cysteine group Chemical group N[C@@H](CS)C(=O)* 0.000 claims description 2
- 201000009277 hairy cell leukemia Diseases 0.000 claims description 2
- 230000001154 acute effect Effects 0.000 claims 1
- 208000025113 myeloid leukemia Diseases 0.000 claims 1
- 108090000623 proteins and genes Proteins 0.000 description 21
- 235000018102 proteins Nutrition 0.000 description 19
- 102000004169 proteins and genes Human genes 0.000 description 19
- 230000006044 T cell activation Effects 0.000 description 18
- 238000000684 flow cytometry Methods 0.000 description 18
- 230000014509 gene expression Effects 0.000 description 15
- 230000001404 mediated effect Effects 0.000 description 15
- 238000000034 method Methods 0.000 description 15
- 108060003951 Immunoglobulin Proteins 0.000 description 14
- 231100000135 cytotoxicity Toxicity 0.000 description 14
- 230000003013 cytotoxicity Effects 0.000 description 14
- 102000018358 immunoglobulin Human genes 0.000 description 14
- 102100035133 Lysosome-associated membrane glycoprotein 1 Human genes 0.000 description 13
- 230000006870 function Effects 0.000 description 13
- 208000031261 Acute myeloid leukaemia Diseases 0.000 description 12
- 239000012634 fragment Substances 0.000 description 12
- 230000004927 fusion Effects 0.000 description 12
- 230000006037 cell lysis Effects 0.000 description 11
- 150000001875 compounds Chemical class 0.000 description 11
- 230000001419 dependent effect Effects 0.000 description 11
- 230000009977 dual effect Effects 0.000 description 11
- 238000010186 staining Methods 0.000 description 11
- 210000004881 tumor cell Anatomy 0.000 description 11
- 230000004913 activation Effects 0.000 description 10
- 108010047041 Complementarity Determining Regions Proteins 0.000 description 9
- 101001023379 Homo sapiens Lysosome-associated membrane glycoprotein 1 Proteins 0.000 description 9
- 238000003501 co-culture Methods 0.000 description 9
- 210000005134 plasmacytoid dendritic cell Anatomy 0.000 description 9
- 230000008685 targeting Effects 0.000 description 9
- 102100024219 T-cell surface glycoprotein CD1a Human genes 0.000 description 8
- 108010054477 Immunoglobulin Fab Fragments Proteins 0.000 description 7
- 102000001706 Immunoglobulin Fab Fragments Human genes 0.000 description 7
- 125000000539 amino acid group Chemical group 0.000 description 7
- 238000012575 bio-layer interferometry Methods 0.000 description 7
- 239000012636 effector Substances 0.000 description 7
- 239000013604 expression vector Substances 0.000 description 7
- 238000005259 measurement Methods 0.000 description 7
- 102100033400 4F2 cell-surface antigen heavy chain Human genes 0.000 description 6
- 238000002965 ELISA Methods 0.000 description 6
- 101000800023 Homo sapiens 4F2 cell-surface antigen heavy chain Proteins 0.000 description 6
- 238000003556 assay Methods 0.000 description 6
- 238000010494 dissociation reaction Methods 0.000 description 6
- 230000005593 dissociations Effects 0.000 description 6
- 230000001939 inductive effect Effects 0.000 description 6
- 239000000203 mixture Substances 0.000 description 6
- 239000013642 negative control Substances 0.000 description 6
- 230000001225 therapeutic effect Effects 0.000 description 6
- 102000017420 CD3 protein, epsilon/gamma/delta subunit Human genes 0.000 description 5
- 210000004369 blood Anatomy 0.000 description 5
- 239000008280 blood Substances 0.000 description 5
- 238000004132 cross linking Methods 0.000 description 5
- 230000009089 cytolysis Effects 0.000 description 5
- 201000010099 disease Diseases 0.000 description 5
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 5
- 238000002474 experimental method Methods 0.000 description 5
- 229910052739 hydrogen Inorganic materials 0.000 description 5
- 102000005962 receptors Human genes 0.000 description 5
- 108020003175 receptors Proteins 0.000 description 5
- 230000009467 reduction Effects 0.000 description 5
- 229910052717 sulfur Inorganic materials 0.000 description 5
- -1 CD79b Proteins 0.000 description 4
- DHMQDGOQFOQNFH-UHFFFAOYSA-N Glycine Chemical compound NCC(O)=O DHMQDGOQFOQNFH-UHFFFAOYSA-N 0.000 description 4
- 102000006496 Immunoglobulin Heavy Chains Human genes 0.000 description 4
- 108010019476 Immunoglobulin Heavy Chains Proteins 0.000 description 4
- 102000018883 Interleukin-3 Receptor alpha Subunit Human genes 0.000 description 4
- 108010052781 Interleukin-3 Receptor alpha Subunit Proteins 0.000 description 4
- 241000282842 Lama glama Species 0.000 description 4
- 208000033776 Myeloid Acute Leukemia Diseases 0.000 description 4
- 210000004544 dc2 Anatomy 0.000 description 4
- 238000010790 dilution Methods 0.000 description 4
- 239000012895 dilution Substances 0.000 description 4
- 238000005516 engineering process Methods 0.000 description 4
- 238000001943 fluorescence-activated cell sorting Methods 0.000 description 4
- 210000004602 germ cell Anatomy 0.000 description 4
- 230000001965 increasing effect Effects 0.000 description 4
- 229910052700 potassium Inorganic materials 0.000 description 4
- 230000003389 potentiating effect Effects 0.000 description 4
- 238000000746 purification Methods 0.000 description 4
- 238000001542 size-exclusion chromatography Methods 0.000 description 4
- 235000002198 Annona diversifolia Nutrition 0.000 description 3
- 241000282836 Camelus dromedarius Species 0.000 description 3
- 102000004127 Cytokines Human genes 0.000 description 3
- 108090000695 Cytokines Proteins 0.000 description 3
- 102000006354 HLA-DR Antigens Human genes 0.000 description 3
- 108010058597 HLA-DR Antigens Proteins 0.000 description 3
- 101710116782 Lysosome-associated membrane glycoprotein 1 Proteins 0.000 description 3
- 238000004458 analytical method Methods 0.000 description 3
- 239000000872 buffer Substances 0.000 description 3
- 210000004899 c-terminal region Anatomy 0.000 description 3
- 238000000576 coating method Methods 0.000 description 3
- 239000012228 culture supernatant Substances 0.000 description 3
- 230000000694 effects Effects 0.000 description 3
- 108020001507 fusion proteins Proteins 0.000 description 3
- 102000037865 fusion proteins Human genes 0.000 description 3
- 238000005734 heterodimerization reaction Methods 0.000 description 3
- 230000001900 immune effect Effects 0.000 description 3
- 230000005847 immunogenicity Effects 0.000 description 3
- 238000004519 manufacturing process Methods 0.000 description 3
- 238000011296 nano differential scanning fluorimetry Methods 0.000 description 3
- 229910052757 nitrogen Inorganic materials 0.000 description 3
- 210000003819 peripheral blood mononuclear cell Anatomy 0.000 description 3
- 239000013612 plasmid Substances 0.000 description 3
- 241000894007 species Species 0.000 description 3
- 108010032595 Antibody Binding Sites Proteins 0.000 description 2
- 241001432959 Chernes Species 0.000 description 2
- 108020004635 Complementary DNA Proteins 0.000 description 2
- 108020004414 DNA Proteins 0.000 description 2
- 102100025137 Early activation antigen CD69 Human genes 0.000 description 2
- 101000934374 Homo sapiens Early activation antigen CD69 Proteins 0.000 description 2
- 101001057504 Homo sapiens Interferon-stimulated gene 20 kDa protein Proteins 0.000 description 2
- 101001055144 Homo sapiens Interleukin-2 receptor subunit alpha Proteins 0.000 description 2
- 102000008394 Immunoglobulin Fragments Human genes 0.000 description 2
- 108010067060 Immunoglobulin Variable Region Proteins 0.000 description 2
- 102000017727 Immunoglobulin Variable Region Human genes 0.000 description 2
- 101000668058 Infectious salmon anemia virus (isolate Atlantic salmon/Norway/810/9/99) RNA-directed RNA polymerase catalytic subunit Proteins 0.000 description 2
- 102100027268 Interferon-stimulated gene 20 kDa protein Human genes 0.000 description 2
- 102000000646 Interleukin-3 Human genes 0.000 description 2
- 108010002386 Interleukin-3 Proteins 0.000 description 2
- 102000010790 Interleukin-3 Receptors Human genes 0.000 description 2
- 108010038452 Interleukin-3 Receptors Proteins 0.000 description 2
- 241001465754 Metazoa Species 0.000 description 2
- 239000004698 Polyethylene Substances 0.000 description 2
- 229920002873 Polyethylenimine Polymers 0.000 description 2
- 108700005078 Synthetic Genes Proteins 0.000 description 2
- 238000010521 absorption reaction Methods 0.000 description 2
- 230000002378 acidificating effect Effects 0.000 description 2
- 238000001042 affinity chromatography Methods 0.000 description 2
- 125000001931 aliphatic group Chemical group 0.000 description 2
- 230000009286 beneficial effect Effects 0.000 description 2
- 210000000601 blood cell Anatomy 0.000 description 2
- 210000001185 bone marrow Anatomy 0.000 description 2
- 238000001818 capillary gel electrophoresis Methods 0.000 description 2
- 238000004113 cell culture Methods 0.000 description 2
- 230000000295 complement effect Effects 0.000 description 2
- 230000004154 complement system Effects 0.000 description 2
- 239000002299 complementary DNA Substances 0.000 description 2
- 238000002784 cytotoxicity assay Methods 0.000 description 2
- 231100000263 cytotoxicity test Toxicity 0.000 description 2
- 239000003599 detergent Substances 0.000 description 2
- 230000029087 digestion Effects 0.000 description 2
- 239000003085 diluting agent Substances 0.000 description 2
- 239000000539 dimer Substances 0.000 description 2
- 230000005764 inhibitory process Effects 0.000 description 2
- 229940076264 interleukin-3 Drugs 0.000 description 2
- 230000002132 lysosomal effect Effects 0.000 description 2
- 238000002826 magnetic-activated cell sorting Methods 0.000 description 2
- 238000013507 mapping Methods 0.000 description 2
- 239000003550 marker Substances 0.000 description 2
- 238000004949 mass spectrometry Methods 0.000 description 2
- 239000012528 membrane Substances 0.000 description 2
- 230000000869 mutational effect Effects 0.000 description 2
- 239000008363 phosphate buffer Substances 0.000 description 2
- 229910052698 phosphorus Inorganic materials 0.000 description 2
- 238000010188 recombinant method Methods 0.000 description 2
- 230000004044 response Effects 0.000 description 2
- 238000009738 saturating Methods 0.000 description 2
- 239000002904 solvent Substances 0.000 description 2
- 230000009870 specific binding Effects 0.000 description 2
- 238000002198 surface plasmon resonance spectroscopy Methods 0.000 description 2
- 238000003786 synthesis reaction Methods 0.000 description 2
- 238000004885 tandem mass spectrometry Methods 0.000 description 2
- 238000012360 testing method Methods 0.000 description 2
- 238000002560 therapeutic procedure Methods 0.000 description 2
- 210000001519 tissue Anatomy 0.000 description 2
- 230000001988 toxicity Effects 0.000 description 2
- 231100000419 toxicity Toxicity 0.000 description 2
- 238000001890 transfection Methods 0.000 description 2
- 238000003146 transient transfection Methods 0.000 description 2
- UAIUNKRWKOVEES-UHFFFAOYSA-N 3,3',5,5'-tetramethylbenzidine Chemical compound CC1=C(N)C(C)=CC(C=2C=C(C)C(N)=C(C)C=2)=C1 UAIUNKRWKOVEES-UHFFFAOYSA-N 0.000 description 1
- 239000004475 Arginine Substances 0.000 description 1
- 102100031491 Arylsulfatase B Human genes 0.000 description 1
- 102100038080 B-cell receptor CD22 Human genes 0.000 description 1
- 102100022005 B-lymphocyte antigen CD20 Human genes 0.000 description 1
- 241000894006 Bacteria Species 0.000 description 1
- 241000283690 Bos taurus Species 0.000 description 1
- 102100025221 CD70 antigen Human genes 0.000 description 1
- 101100476210 Caenorhabditis elegans rnt-1 gene Proteins 0.000 description 1
- 241000282832 Camelidae Species 0.000 description 1
- 241000283707 Capra Species 0.000 description 1
- 102000000844 Cell Surface Receptors Human genes 0.000 description 1
- 108010001857 Cell Surface Receptors Proteins 0.000 description 1
- 102000019034 Chemokines Human genes 0.000 description 1
- 108010012236 Chemokines Proteins 0.000 description 1
- 241000251730 Chondrichthyes Species 0.000 description 1
- 239000004971 Cross linker Substances 0.000 description 1
- 101100012887 Drosophila melanogaster btl gene Proteins 0.000 description 1
- 101100012878 Drosophila melanogaster htl gene Proteins 0.000 description 1
- 108090000790 Enzymes Proteins 0.000 description 1
- 102000004190 Enzymes Human genes 0.000 description 1
- 102000000579 Epigen Human genes 0.000 description 1
- 108010016906 Epigen Proteins 0.000 description 1
- 108010087819 Fc receptors Proteins 0.000 description 1
- 102000009109 Fc receptors Human genes 0.000 description 1
- 229920001917 Ficoll Polymers 0.000 description 1
- 239000004471 Glycine Substances 0.000 description 1
- 102000003886 Glycoproteins Human genes 0.000 description 1
- 108090000288 Glycoproteins Proteins 0.000 description 1
- 208000002250 Hematologic Neoplasms Diseases 0.000 description 1
- 102100031573 Hematopoietic progenitor cell antigen CD34 Human genes 0.000 description 1
- 238000011993 High Performance Size Exclusion Chromatography Methods 0.000 description 1
- 101000690301 Homo sapiens Aldo-keto reductase family 1 member C4 Proteins 0.000 description 1
- 101000884305 Homo sapiens B-cell receptor CD22 Proteins 0.000 description 1
- 101000897405 Homo sapiens B-lymphocyte antigen CD20 Proteins 0.000 description 1
- 101000934356 Homo sapiens CD70 antigen Proteins 0.000 description 1
- 101000777663 Homo sapiens Hematopoietic progenitor cell antigen CD34 Proteins 0.000 description 1
- 101000777628 Homo sapiens Leukocyte antigen CD37 Proteins 0.000 description 1
- 101001008874 Homo sapiens Mast/stem cell growth factor receptor Kit Proteins 0.000 description 1
- 101000934338 Homo sapiens Myeloid cell surface antigen CD33 Proteins 0.000 description 1
- 101001116548 Homo sapiens Protein CBFA2T1 Proteins 0.000 description 1
- 101000884271 Homo sapiens Signal transducer CD24 Proteins 0.000 description 1
- 101000649129 Homo sapiens T cell receptor delta variable 2 Proteins 0.000 description 1
- 101000680681 Homo sapiens T cell receptor gamma variable 9 Proteins 0.000 description 1
- 102000008100 Human Serum Albumin Human genes 0.000 description 1
- 108091006905 Human Serum Albumin Proteins 0.000 description 1
- 108010021625 Immunoglobulin Fragments Proteins 0.000 description 1
- QIVBCDIJIAJPQS-VIFPVBQESA-N L-tryptophane Chemical compound C1=CC=C2C(C[C@H](N)C(O)=O)=CNC2=C1 QIVBCDIJIAJPQS-VIFPVBQESA-N 0.000 description 1
- 241000282852 Lama guanicoe Species 0.000 description 1
- 102100031586 Leukocyte antigen CD37 Human genes 0.000 description 1
- 108010009254 Lysosomal-Associated Membrane Protein 1 Proteins 0.000 description 1
- 102100027754 Mast/stem cell growth factor receptor Kit Human genes 0.000 description 1
- 102000018697 Membrane Proteins Human genes 0.000 description 1
- 108010052285 Membrane Proteins Proteins 0.000 description 1
- 241001436793 Meru Species 0.000 description 1
- 241000699666 Mus <mouse, genus> Species 0.000 description 1
- 102100025243 Myeloid cell surface antigen CD33 Human genes 0.000 description 1
- 241000750004 Nestor meridionalis Species 0.000 description 1
- 241000283973 Oryctolagus cuniculus Species 0.000 description 1
- 108090000526 Papain Proteins 0.000 description 1
- 229920001213 Polysorbate 20 Polymers 0.000 description 1
- 239000004365 Protease Substances 0.000 description 1
- 241000283984 Rodentia Species 0.000 description 1
- 241000239226 Scorpiones Species 0.000 description 1
- 108091058545 Secretory proteins Proteins 0.000 description 1
- 102000040739 Secretory proteins Human genes 0.000 description 1
- MTCFGRXMJLQNBG-UHFFFAOYSA-N Serine Natural products OCC(N)C(O)=O MTCFGRXMJLQNBG-UHFFFAOYSA-N 0.000 description 1
- 102100038081 Signal transducer CD24 Human genes 0.000 description 1
- 102100027948 T cell receptor delta variable 2 Human genes 0.000 description 1
- 102100022393 T cell receptor gamma variable 9 Human genes 0.000 description 1
- 108700012920 TNF Proteins 0.000 description 1
- AYFVYJQAPQTCCC-UHFFFAOYSA-N Threonine Natural products CC(O)C(N)C(O)=O AYFVYJQAPQTCCC-UHFFFAOYSA-N 0.000 description 1
- 239000004473 Threonine Substances 0.000 description 1
- QIVBCDIJIAJPQS-UHFFFAOYSA-N Tryptophan Natural products C1=CC=C2C(CC(N)C(O)=O)=CNC2=C1 QIVBCDIJIAJPQS-UHFFFAOYSA-N 0.000 description 1
- 101150117115 V gene Proteins 0.000 description 1
- 241001416177 Vicugna pacos Species 0.000 description 1
- 239000003070 absorption delaying agent Substances 0.000 description 1
- 231100000230 acceptable toxicity Toxicity 0.000 description 1
- 239000008351 acetate buffer Substances 0.000 description 1
- 239000002671 adjuvant Substances 0.000 description 1
- 125000003158 alcohol group Chemical group 0.000 description 1
- 150000003862 amino acid derivatives Chemical class 0.000 description 1
- 239000012491 analyte Substances 0.000 description 1
- 239000003242 anti bacterial agent Substances 0.000 description 1
- 230000000844 anti-bacterial effect Effects 0.000 description 1
- 229940121375 antifungal agent Drugs 0.000 description 1
- 239000003429 antifungal agent Substances 0.000 description 1
- 239000003963 antioxidant agent Substances 0.000 description 1
- 238000013459 approach Methods 0.000 description 1
- ODKSFYDXXFIFQN-UHFFFAOYSA-N arginine Natural products OC(=O)C(N)CCCNC(N)=N ODKSFYDXXFIFQN-UHFFFAOYSA-N 0.000 description 1
- 125000003118 aryl group Chemical group 0.000 description 1
- 239000011324 bead Substances 0.000 description 1
- 230000004071 biological effect Effects 0.000 description 1
- 230000000903 blocking effect Effects 0.000 description 1
- 229910052799 carbon Inorganic materials 0.000 description 1
- 239000000969 carrier Substances 0.000 description 1
- 239000005018 casein Substances 0.000 description 1
- BECPQYXYKAMYBN-UHFFFAOYSA-N casein, tech. Chemical compound NCCCCC(C(O)=O)N=C(O)C(CC(O)=O)N=C(O)C(CCC(O)=N)N=C(O)C(CC(C)C)N=C(O)C(CCC(O)=O)N=C(O)C(CC(O)=O)N=C(O)C(CCC(O)=O)N=C(O)C(C(C)O)N=C(O)C(CCC(O)=N)N=C(O)C(CCC(O)=N)N=C(O)C(CCC(O)=N)N=C(O)C(CCC(O)=O)N=C(O)C(CCC(O)=O)N=C(O)C(COP(O)(O)=O)N=C(O)C(CCC(O)=N)N=C(O)C(N)CC1=CC=CC=C1 BECPQYXYKAMYBN-UHFFFAOYSA-N 0.000 description 1
- 235000021240 caseins Nutrition 0.000 description 1
- 230000015556 catabolic process Effects 0.000 description 1
- 230000030833 cell death Effects 0.000 description 1
- 238000012512 characterization method Methods 0.000 description 1
- 239000003795 chemical substances by application Substances 0.000 description 1
- 238000003776 cleavage reaction Methods 0.000 description 1
- 238000010367 cloning Methods 0.000 description 1
- 230000004186 co-expression Effects 0.000 description 1
- 238000012761 co-transfection Methods 0.000 description 1
- 239000011248 coating agent Substances 0.000 description 1
- 238000002648 combination therapy Methods 0.000 description 1
- 230000006957 competitive inhibition Effects 0.000 description 1
- 230000024203 complement activation Effects 0.000 description 1
- 230000001143 conditioned effect Effects 0.000 description 1
- 238000007796 conventional method Methods 0.000 description 1
- 239000003431 cross linking reagent Substances 0.000 description 1
- 239000013078 crystal Substances 0.000 description 1
- 125000000392 cycloalkenyl group Chemical group 0.000 description 1
- 230000016396 cytokine production Effects 0.000 description 1
- 231100000433 cytotoxic Toxicity 0.000 description 1
- 230000001472 cytotoxic effect Effects 0.000 description 1
- 238000007405 data analysis Methods 0.000 description 1
- 238000006731 degradation reaction Methods 0.000 description 1
- 238000000432 density-gradient centrifugation Methods 0.000 description 1
- 238000013461 design Methods 0.000 description 1
- 238000001514 detection method Methods 0.000 description 1
- 230000001627 detrimental effect Effects 0.000 description 1
- 238000011161 development Methods 0.000 description 1
- CEJLBZWIKQJOAT-UHFFFAOYSA-N dichloroisocyanuric acid Chemical compound ClN1C(=O)NC(=O)N(Cl)C1=O CEJLBZWIKQJOAT-UHFFFAOYSA-N 0.000 description 1
- 239000002612 dispersion medium Substances 0.000 description 1
- 229940079593 drug Drugs 0.000 description 1
- 238000007876 drug discovery Methods 0.000 description 1
- 230000008030 elimination Effects 0.000 description 1
- 238000003379 elimination reaction Methods 0.000 description 1
- 239000002158 endotoxin Substances 0.000 description 1
- 230000002255 enzymatic effect Effects 0.000 description 1
- 229940088598 enzyme Drugs 0.000 description 1
- 102000052116 epidermal growth factor receptor activity proteins Human genes 0.000 description 1
- 108700015053 epidermal growth factor receptor activity proteins Proteins 0.000 description 1
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 1
- 230000002349 favourable effect Effects 0.000 description 1
- 239000000945 filler Substances 0.000 description 1
- 239000000834 fixative Substances 0.000 description 1
- 238000013467 fragmentation Methods 0.000 description 1
- 238000006062 fragmentation reaction Methods 0.000 description 1
- 238000010353 genetic engineering Methods 0.000 description 1
- 150000002333 glycines Chemical class 0.000 description 1
- 235000019410 glycyrrhizin Nutrition 0.000 description 1
- 230000036541 health Effects 0.000 description 1
- 238000004896 high resolution mass spectrometry Methods 0.000 description 1
- 102000054751 human RUNX1T1 Human genes 0.000 description 1
- 210000005260 human cell Anatomy 0.000 description 1
- 239000001257 hydrogen Substances 0.000 description 1
- 125000001165 hydrophobic group Chemical group 0.000 description 1
- 230000005934 immune activation Effects 0.000 description 1
- 210000000987 immune system Anatomy 0.000 description 1
- 230000003053 immunization Effects 0.000 description 1
- 238000002649 immunization Methods 0.000 description 1
- 238000000126 in silico method Methods 0.000 description 1
- 238000001727 in vivo Methods 0.000 description 1
- 238000011534 incubation Methods 0.000 description 1
- 230000006698 induction Effects 0.000 description 1
- 230000003993 interaction Effects 0.000 description 1
- 238000007918 intramuscular administration Methods 0.000 description 1
- 238000001990 intravenous administration Methods 0.000 description 1
- 239000003446 ligand Substances 0.000 description 1
- 230000003211 malignant effect Effects 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 239000011159 matrix material Substances 0.000 description 1
- 238000000816 matrix-assisted laser desorption--ionisation Methods 0.000 description 1
- MYWUZJCMWCOHBA-VIFPVBQESA-N methamphetamine Chemical compound CN[C@@H](C)CC1=CC=CC=C1 MYWUZJCMWCOHBA-VIFPVBQESA-N 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 210000005087 mononuclear cell Anatomy 0.000 description 1
- YOHYSYJDKVYCJI-UHFFFAOYSA-N n-[3-[[6-[3-(trifluoromethyl)anilino]pyrimidin-4-yl]amino]phenyl]cyclopropanecarboxamide Chemical compound FC(F)(F)C1=CC=CC(NC=2N=CN=C(NC=3C=C(NC(=O)C4CC4)C=CC=3)C=2)=C1 YOHYSYJDKVYCJI-UHFFFAOYSA-N 0.000 description 1
- 230000001590 oxidative effect Effects 0.000 description 1
- 229940055729 papain Drugs 0.000 description 1
- 235000019834 papain Nutrition 0.000 description 1
- 230000037361 pathway Effects 0.000 description 1
- 238000010647 peptide synthesis reaction Methods 0.000 description 1
- 238000002823 phage display Methods 0.000 description 1
- 229940124531 pharmaceutical excipient Drugs 0.000 description 1
- 230000004962 physiological condition Effects 0.000 description 1
- 230000006461 physiological response Effects 0.000 description 1
- 235000010486 polyoxyethylene sorbitan monolaurate Nutrition 0.000 description 1
- 239000000256 polyoxyethylene sorbitan monolaurate Substances 0.000 description 1
- 235000010482 polyoxyethylene sorbitan monooleate Nutrition 0.000 description 1
- 229920000053 polysorbate 80 Polymers 0.000 description 1
- 239000013641 positive control Substances 0.000 description 1
- 238000002360 preparation method Methods 0.000 description 1
- 239000003755 preservative agent Substances 0.000 description 1
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 description 1
- 239000000047 product Substances 0.000 description 1
- 238000003259 recombinant expression Methods 0.000 description 1
- 238000012552 review Methods 0.000 description 1
- 150000003839 salts Chemical class 0.000 description 1
- 230000007017 scission Effects 0.000 description 1
- 239000006152 selective media Substances 0.000 description 1
- 210000002966 serum Anatomy 0.000 description 1
- 230000011664 signaling Effects 0.000 description 1
- 238000009097 single-agent therapy Methods 0.000 description 1
- 238000002415 sodium dodecyl sulfate polyacrylamide gel electrophoresis Methods 0.000 description 1
- 238000004611 spectroscopical analysis Methods 0.000 description 1
- 239000003381 stabilizer Substances 0.000 description 1
- 210000000130 stem cell Anatomy 0.000 description 1
- 238000007920 subcutaneous administration Methods 0.000 description 1
- 239000000126 substance Substances 0.000 description 1
- 235000000346 sugar Nutrition 0.000 description 1
- 150000008163 sugars Chemical class 0.000 description 1
- 208000024891 symptom Diseases 0.000 description 1
- 229940124597 therapeutic agent Drugs 0.000 description 1
- 125000000341 threoninyl group Chemical class [H]OC([H])(C([H])([H])[H])C([H])(N([H])[H])C(*)=O 0.000 description 1
- 231100000331 toxic Toxicity 0.000 description 1
- 230000002588 toxic effect Effects 0.000 description 1
- 230000007704 transition Effects 0.000 description 1
- 230000005909 tumor killing Effects 0.000 description 1
- 230000003827 upregulation Effects 0.000 description 1
- 230000035899 viability Effects 0.000 description 1
- 238000005406 washing Methods 0.000 description 1
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 1
- 238000002424 x-ray crystallography Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2803—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
- C07K16/2809—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily against the T-cell receptor (TcR)-CD3 complex
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2866—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against receptors for cytokines, lymphokines, interferons
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K2039/505—Medicinal preparations containing antigens or antibodies comprising antibodies
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
- C07K2317/31—Immunoglobulins specific features characterized by aspects of specificity or valency multispecific
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
- C07K2317/569—Single domain, e.g. dAb, sdAb, VHH, VNAR or nanobody®
Landscapes
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Immunology (AREA)
- Organic Chemistry (AREA)
- Medicinal Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- General Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- Pharmacology & Pharmacy (AREA)
- Animal Behavior & Ethology (AREA)
- Public Health (AREA)
- Veterinary Medicine (AREA)
- Peptides Or Proteins (AREA)
Description
WO 2022/180271 PCT/EP2022/054993 Antibodies that bind CD123 and gamma-delta T cell receptors Field of the invention The present invention relates to novel multispecific antibodies capable of binding human CD123 and capable of binding the V82 chain of a human Vy9V82 T cell receptor. The invention further relates to pharmaceutical compositions comprising the antibodies of the invention and to uses of the antibodies of the invention for medical treatment.
Background of the invention CD123, or the interleukin-3 (IL3) receptor alpha chain, is a membrane protein that transmits signaling by 113, a cytokine involved in blood cell production. CD1 forms a heterodimer with the common beta chain CD131. CD123 is normally expressed on some types of blood cells, such as plasmacytoid dendritic cells or monocytes and by a subset of normal myeloid progenitors. However, CD123 is strongly overexpressed on leukemic stem cells of patients with acute myeloid leukemia. CD123 is therefore a potential therapeutic target in several hematologic malignancies, including acute myeloid leukemia.
Several bispecific CD123-CD3 T cell engaging antibodies have been described (Kuo et al. (2012) Protein Eng Des Set 10:561; Al-Hussaini et al. (2016) Blood 127:122). Bispecific T-cell engaging antibodies have a tumor target binding specificity and a T-cell binding specificity and thus boost efficacy by re-directing T- cell cytotoxicity to malignant cells, see e.g. Huehls et al. (2015) Immunol Cell Biol 93:290; Ellerman (2019) Methods, 154:102; de Bruin et al. (2017) Oncoimmunology 7(l):el375641 and WO2015156673. However, results vary significantly. For example, in one study in which a CD3 binding moiety was combined with binding moieties against 8 different B-cell targets (CD20, CD22, CD24, CD37, CD70, CD79b, CD138 and HLA-DR), it was found that the bispecific antibodies targeting the different tumor targets showed strong variation in their WO 2022/180271 PCT/EP2022/054993 capacity to induce target cell cytotoxicity and that cytotoxicity did not correlate with antigen expression levels. For example, CD3-based bispecific antibodies targeting HLA-DR or CD138 were not able to induce cytotoxicity, in spite of intermediate to high HLA-DR and CD138 expression levels (Engelberts et al. (2020) Ebiomedicine 52:102625). Few T-cell redirecting therapies have reached late-stage clinical development, possibly due to significant toxicity, manufacturing problems, immunogenicity, narrow therapeutic windows and low response. In particular, toxicity may occur when the T-cell engager includes a CD3 binding arm and result in uncontrolled, exaggerated, immune activation and cytokine release.
Thus, while significant progress has been made, there is still a need for novel CD123 targeting antibodies that are therapeutically effective yet have acceptable toxicity, as well as stability and manufacturability.
Summary of the invention The present invention provides novel antibodies for CD123-based therapy.
Bispecific antibodies were constructed in which single-domain CD123-binding regions were combined with binding regions capable of binding the V82 chain of a human Vy9V82 T cell receptor and thus engaging y8T cells. Surprisingly, the bispecific antibodies were exceptionally potent in mediating activation of Vy9V62 T cells and inducing killing of CD123-expressing cell lines as well as patient-derived tumor cells in the presence of Vy9V62 T cells.
Accordingly, in a first aspect, the invention provides a multispecific antibody comprising a first antigen-binding region capable of binding human CD123 and a second antigen-binding region capable of binding the V82 chain of a human Vy9V T cell receptor.
In a further main aspect, the invention provides an antibody comprising a first antigen-binding region capable of binding human CD123, wherein the first antigen- binding region is a single-domain antibody comprising: (i) VH CDR1 sequence set forth in SEQ ID NO:2, the VH CDR2 sequence set WO 2022/180271 PCT/EP2022/054993 forth in SEQ ID NO:3 and the VH CDR3 sequence set forth in SEQ ID NO:4, wherein preferably the first antigen-binding region comprises or consists of: a sequence selected from the group of sequences set forth in SEQ ID NO:1, to 34, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to a sequence selected from the group of sequences set forth in SEQ ID NO:1, 25 to 34, or (ii) the VH CDR1 sequence set forth in SEQ ID NO: 10, the VH CDR2 sequence set forth in SEQ ID NO: 11 and the VH CDR3 sequence set forth in SEQ ID NO: 12, wherein preferably the first antigen-binding region comprises or consists of: the sequence set forth in SEQ ID NO:9, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:9.
Further aspects and embodiments of the invention are described below.
Brief description of the drawings Figure 1: ELISA showing binding of all different bispecific VHHs to CD123, the Vy9V62 (GDT) TOR. and BSA (as negative control). OD values are depicted; values are the mean of duplicate measurements; error bars indicate standard errors of the mean. A mono-valent anti-V62 VHH was used as control for the TCR staining ("TCR control") and a commercially available anti-CD123 antibody ("anti-CD123") was used as control for the CD123 antigen coatings. "No AB" indicates a negative control without primary antibody.
Figure 2: Specificity of binding of bispecific VHH using flow cytometry. The geometric mean of the fluorescence signal is plotted as a function of the antibody- and cell type used. A VHH recognizing EGFR that is endogenously expressed by 293F cells was included as positive control. A monovalent anti-V62 VHH was used as negative control VHH.
Figure 3: Determination of the apparent affinity of lD2-5C8varl for binding to CD123 using flow cytometry. A dilution series of purified lD2-5C8varl was tested WO 2022/180271 PCT/EP2022/054993 for binding to 293F cells transiently expressing either CD123, or CD131, or both CD123 and -131. The geometric mean of the fluorescence intensity is plotted as a function of the antibody concentration used. The EC50 value was determined by curve fitting.
Figure 4: Representative BLI analysis of lD2-5C8varl binding to CD123. The shift in light reflection (measured in nm) that is representative of the protein mass bound is plotted as a function of time. 0-300 seconds: association phase; 300-9 seconds: dissociation phase.
Figure 5: CIR-neo target cell-dependent, lD2-5C8varl-mediated Vy9V62 T cell activation. The percentage of CD3+-Vy9+ T cells showing CD107A expression (degranulation) is plotted as a function of the concentration of antibody used.
Experiments using two different donors are depicted.
Figure 6: lD2-5C8varl-induced, Vy9V62 T cell mediated CIR-neo target cell cytotoxicity. The percentage of living CIR-neo target cells is plotted as a function of the concentration of bispecific VHH used. Data obtained with two different donors of Vy9V62 T cells are depicted.
Figure 7: Bispecific VHH-induced, Vy9V62 T cell mediated THP-1 target cell cytotoxicity. The percentage of living THP-1 target cells is plotted as a function of the concentration bispecific VHH used.
Figure 8: Bispecific VHH-mediated Vy9V62 T cell activation and bispecific VHH mediated T cell induced lysis of a patient-derived primary AML sample. Upper panel: T cell activation as measured by CD107A expression. Lower panel: lysis of AML blasts by T cells in conjunction with bispecific VHH.
Figure 9: HP-SEC profile of purified anti-CD123 x Vy9V62 TCR bispecific antibody lD2-5C8varl(Y105F)-Fc.
Figure 10: lD2-5C8varl(Y105F)-Fc induces Vy9V62 T cell activation. A typical experiment is shown. The percentage of CD107a- (lysosomal-associated protein-1, or LAMP-1) positive Vy9V62 cells is depicted as a function of the concentration of compound used. EC50 values (in pM, determined by curve-fitting) are depicted WO 2022/180271 PCT/EP2022/054993 below the graph. Data points are means of triplicate measurements; error bars represent standard deviations.
Figure 11: lD2-5C8varl(Y105F)-Fc induced T cell-mediated target cell lysis. A typical experiment is shown. The graph shows the percentage of target cells killed after 24 hours of co-culture as a function of the concentration of compound used.
EC50 values (in pM, determined by curve-fitting) are depicted below the graph.
Data points are means of triplicate measurements; error bars represent standard deviations.
Figure 12: CD123 expression levels on plasmacytoid dendritic cells (upper panel) and on the THP-1 cell line (lower panel). Atypical staining is shown. Histograms depicting non-stained cells, an isotype control staining (left overlapping histograms) and staining for CD123 (right peaks) are depicted. The number of events (Y-axis) is shown as function of the fluorescence intensity (X-axis).
Figure 13: lD2-5C8varl(Y105F)-Fc induces preferential killing of THP-1 cells compared to pDCs. A representative result is shown. The percentage of target cells killed is depicted as a function of the concentration of compound used per target cell population (i.e. THP-1 or pDC). EC50 values (in pM, determined by curve- fitting) are depicted below the graph. Data points are means of triplicate measurements; error bars represent standard deviations.
Figure 14: Primary amino acid sequence of full length human CD123 (GenBank accession number NM_002183.4) (SEQ ID NO:23). The residues that were found cross-linked to the 1D2 antibody are bold and underlined. The residues in italics (flanked by found reactive residues) may also be part of the recognized epitope.
Figure 15: C-alpha trace model of CD123 (the IL-3 receptor alpha chain: Broughton et al., 2018 2018 Nat Commun. 9: 386); the residues that were found cross-linked to the antibody are indicated. The membrane-spanning helix would be located to the left of the figure.
Figure 16: Stress-induced changes as determined by measuring aggregates and fragments by (A) size exclusion chromatography detected by ultraviolet absorption WO 2022/180271 PCT/EP2022/054993 (SEC-UV) and (B) capillary gel electrophoresis under denaturing (SDS) conditions (CE-SDS) and after reduction.
Figure 17: (A) Degranulation analyzed after 4 hours by measuring the percentage CD107a (lysosomal-associated protein-1, or LAMP-1) positive cells via flow cytometry. (B) T cell activation analyzed by measuring the percentage CD positive cells. (C) cytotoxicity analyzed by determining the percentage live target cells after 24 hours via flow cytometry.
Detailed description of the invention Definitions The term "human CD123", when used herein, refers to the human CD123 protein, also termed interleukin-3 receptor alpha chain (GenBank accession number NM_002183.4, NCBI Reference Sequence: NP_002174.1). The sequence of human CD123 is set forth in SEQ ID NO:23. The IL3 receptor is a heterodimer of CD1 with CD131, a common beta chain (NCBI Reference Sequence: NP_000386.1).
CD131 is set forth in SEQ ID NO:24.
The term "human V82", when used herein, refers to the rearranged 62 chain of the Vy9V62-T cell receptor (TCR) (SEQ ID NO:48). UniProtKB - AOJD (A0JD36_HUMAN) gives an example of a variable TRDV2 sequence.
The term "human Vy9", when used herein, refers to the refers to the rearranged y9 chain of the Vy9V62-T cell receptor (TCR). UniProtKB - Q99603_HUMAN gives an example of a variable TRGV9 sequence.
The term "antibody" is intended to refer to an immunoglobulin molecule, a fragment of an immunoglobulin molecule, or a derivative of either thereof, which has the ability to specifically bind to an antigen under typical physiological conditions with a half-life of significant periods of time, such as at least about minutes, at least about one hour, at least about two hours, at least about 8 hours, at least about 12 hours, about 24 hours or more, about 48 hours or more, about 3, 4, 5, 6, 7 or more days, etc., or any other relevant functionally-defined period WO 2022/180271 PCT/EP2022/054993 (such as a time sufficient to induce, promote, enhance, and/or modulate a physiological response associated with antibody binding to the antigen and/or time sufficient for the antibody to recruit an effector activity). Antigen-binding regions which interact with an antigen may comprise variable regions of both the heavy and light chains of an immunoglobulin molecule or may comprise or consist of single-domain antigen-binding regions, for example a heavy chain variable region only. The constant regions of an antibody, if present, may mediate the binding of the immunoglobulin to host tissues or factors, including various cells of the immune system (such as effector cells and T cells) and components of the complement system such as Clq, the first component in the classical pathway of complement activation. In some embodiments, however, the Fc region of the antibody has been modified to become inert, "inert" means an Fc region which is at least not able to bind any Fey Receptors, induce Fc-mediated cross-linking of FcRs, or induce FcR- mediated cross-linking of target antigens via two Fc regions of individual antibodies.
In a further embodiment, the inert Fc region is in addition not able to bind Clq. In one embodiment, the antibody contains mutations at positions 234 and 2 (Canfield and Morrison (1991) J Exp Med 173:1483), e.g. a Leu to Rhe mutation at position 234 and a Leu to Glu mutation at position 235 (according to the EU- numbering, see below). In another embodiment, the antibody contains a Leu to Ala mutation at position 234, a Leu to Ala mutation at position 235 and a Pro to Gly mutation at position 329. In another embodiment, the antibody contains a Leu to Phe mutation at position 234, a Leu to Glu mutation at position 235 and an Asp to Ala at position 265.
The Fc region of an immunoglobulin is defined as the fragment of an antibody which would be typically generated after digestion of an antibody with papain which includes the two CH2-CH3 regions of an immunoglobulin and a connecting region, e.g. a hinge region. The constant domain of an antibody heavy chain defines the antibody isotype, e.g. IgGl, IgG2, IgG3, IgG4, IgAl, IgA2, IgM, IgD, or IgE. The WO 2022/180271 PCT/EP2022/054993 Fc-region mediates the effector functions of antibodies with cell surface receptors called Fc receptors and proteins of the complement system.
The term "hinge region" as used herein is intended to refer to the hinge region of an immunoglobulin heavy chain. Thus, for example the hinge region of a human IgGl antibody corresponds to amino acids 216-230 according to the EU numbering.
The term "CH2 region" or "CH2 domain" as used herein is intended to refer to the CH2 region of an immunoglobulin heavy chain. Thus, for example the CH region of a human IgGl antibody corresponds to amino acids 231-340 according to the EU numbering. However, the CH2 region may also be any of the other subtypes as described herein.
The term "CH3 region" or "CH3 domain" as used herein is intended to refer to the CH3 region of an immunoglobulin heavy chain. Thus, for example the CH region of a human IgGl antibody corresponds to amino acids 341-447 according to the EU numbering. However, the CH3 region may also be any of the other subtypes as described herein.
Reference to amino acid positions in the Fc region/Fc domain in the present invention is according to the EU-numbering (Edelman et al., Proc Natl Acad Sci U S A. 1969 May;63(l):78-85; Kabat et al., Sequences of proteins of immunological interest. Sth Edition - 1991 NIH Publication No. 91-3242).
As indicated above, the term antibody as used herein, unless otherwise stated or clearly contradicted by context, includes fragments of an antibody that retain the ability to specifically bind to the antigen. It has been shown that the antigen- binding function of an antibody may be performed by fragments of a full-length antibody. Examples of binding fragments encompassed within the term "antibody" include (i) a Fab' or Fab fragment, i.e. a monovalent fragment consisting of the VL, VH, CL and CHI domains, or a monovalent antibody as described in WO2007059782; (ii) F(ab')2 fragments, i.e. bivalent fragments comprising two Fab fragments linked by a disulfide bridge at the hinge region; (iii) a Fd fragment consisting essentially of the VH and CHI domains; and (iv) a Fv fragment consisting WO 2022/180271 PCT/EP2022/054993 essentially of the VL and VH domains of a single arm of an antibody. Furthermore, although the two domains of the Fv fragment, VL and VH, are coded for by separate genes, they may be joined, using recombinant methods, by a synthetic linker that enables them to be made as a single protein chain in which the VL and VH regions pair to form monovalent molecules (known as single chain antibodies or single chain Fv (scFv), see for instance Bird et al., Science 242, 423-426 (1988) and Huston et al., PNAS USA 85, 5879-5883 (1988)). Such single-chain antibodies are encompassed within the term antibody unless otherwise indicated by context. The term antibody, unless specified otherwise, also includes polyclonal antibodies, monoclonal antibodies (mAbs), chimeric antibodies and humanized antibodies, and antibody fragments provided by any known technique, such as enzymatic cleavage, peptide synthesis, and recombinant techniques.
In some embodiments of the antibodies of the invention, the first antigen- binding region or the second antigen-binding region, or both, is a single-domain antibody. Single-domain antibodies (sdAb, also called Nanobody®, or VHH) are well known to the skilled person, see e.g. Hamers-Casterman et al. (1993) Nature 363:446, Roovers et al. (2007) Curr Opin Mol Ther 9:327 and Krah et al. (2016) Immunopharmacol Immunotoxicol 38:21. Single-domain antibodies comprise a single CDR1, a single CDR2 and a single CDR3. Examples of single-domain antibodies are variable fragments of heavy-chain-only antibodies, antibodies that naturally do not comprise light chains, single-domain antibodies derived from conventional antibodies, and engineered antibodies. Single-domain antibodies may be derived from any species including mouse, human, camel, llama, shark, goat, rabbit, and cow. For example, naturally occurring VHH molecules can be derived from antibodies raised in Camelidae species, for example in camel, dromedary, llama, alpaca and guanaco. Like a whole antibody, a single-domain antibody is able to bind selectively to a specific antigen. Single-domain antibodies may contain only the variable domain of an immunoglobulin chain, i.e. CDR1, CDR2 and CDR3 and framework regions.
WO 2022/180271 PCT/EP2022/054993 The term "immunoglobulin" as used herein is intended to refer to a class of structurally related glycoproteins typically consisting of two pairs of polypeptide chains, one pair of light (L) chains and one pair of heavy (H) chains, all four potentially inter-connected by disulfide bonds, although some mammalian species do not product light chain and only make heavy-chain antibodies. The term "immunoglobulin heavy chain", "heavy chain of an immunoglobulin" or "heavy chain" as used herein is intended to refer to one of the chains of an immunoglobulin.
A heavy chain is typically comprised of a heavy chain variable region (abbreviated herein as VH) and a heavy chain constant region (abbreviated herein as CH) which defines the isotype of the immunoglobulin. The heavy chain constant region typically is comprised of three domains, CHI, CH2, and CH3. The heavy chain constant region further comprises a hinge region. Within the structure of the immunoglobulin (e.g. IgG), the two heavy chains are inter-connected via disulfide bonds in the hinge region. Equally to the heavy chains, each light chain is typically comprised of several regions; a light chain variable region (VL) and a light chain constant region (CL). Furthermore, the VH and VL regions may be subdivided into regions of hypervariability (or hypervariable regions which may be hypervariable in sequence and/or form structurally defined loops), also termed complementarity determining regions (CDRs), interspersed with regions that are more conserved, termed framework regions (FRs). Each VH and VL is typically composed of three CDRs and four FRs, arranged from amino-terminus to carboxy-terminus in the following order: FR1, CDR1, FR2, CDR2, FR3, CDR3, FR4. CDR sequences may be determined by use of various methods, e.g. the methods provided by Choitia and Lesk (1987) J. Mol. Biol. 196:901 or Kabat et al. (1991) Sequence of protein of immunological interest, fifth edition. NIH publication. Various methods for CDR determination and amino acid numbering can be compared on www.abysis.org (UCL).
The term "isotype" as used herein, refers to the immunoglobulin (sub)class (for instance IgGl, IgG2, IgG3, IgG4, IgD, IgA, IgE, or IgM) or any allotype thereof, WO 2022/180271 PCT/EP2022/054993 such as IgGlm(za) and IgGlm(f) that is encoded by heavy chain constant region genes. Each heavy chain isotype can be combined with either a kappa (k) or lambda (A) light chain. An antibody of the invention can possess any isotype.
The term "parent antibody", is to be understood as an antibody which is identical to an antibody according to the invention, but wherein the parent antibody does not have one or more of the specified mutations. A "variant" or "antibody variant" or a "variant of a parent antibody" of the present invention is an antibody molecule which comprises one or more mutations as compared to a "parent antibody". Amino acid substitutions may exchange a native amino acid for another naturally-occurring amino acid, or for a non-naturally-occurring amino acid derivative. The amino acid substitution may be conservative or non-conservative.
In the context of the present invention, conservative substitutions may be defined by substitutions within the classes of amino acids reflected in one or more of the following three tables: Amino acid residue classes for conservative substitutions Acidic Residues Asp (D) and Glu (E) Basic Residues Lys (K), Arg (R), and His (H) Hydrophilic Uncharged Residues Ser (S), Thr (T), Asn (N), and Gin (Q) Aliphatic Uncharged Residues Gly (G), Ala (A), Vai (V), Leu (L), and He (I) Non-polar Uncharged Residues Cys (C), Met (M), and Pro (P) Aromatic Residues Phe (F), Tyr (Y), and Trp (W) Alternative conservative amino acid residue substitution classes 1 A S T 2 D E 3 NQ 4 R K I L M WO 2022/180271 PCT/EP2022/054993 6 F Y W Alternative Physical and Functional Classifications of Amino Acid Residues Alcohol group-containing residues Aliphatic residues Cycloalkenyl-associated residues Hydrophobic residues Negatively charged residues Polar residues Positively charged residues Small residues Very small residues Residues involved in turn formation Flexible residues S and T I, L, V, and M F, H, W, and Y A, C, F, G, H, I, L, M, R, T, V, W, and Y D and E C, D, E, H, K, N, Q, R, S, and T H, K, and R A, C, D, G, N, P, S, T, and V A, G, and S A, C, D, E, G, H, K, N, Q, R, S, P, and T Q, T, K, S, G, N, D, E, and R In the context of the present invention, a substitution in a variant is indicated as: Original amino acid - position - substituted amino acid; The three-letter code, or one letter code, are used, including the codes Xaa and X to indicate amino acid residue. Accordingly, the notation "T366W" means that the variant comprises a substitution of threonine with tryptophan in the variant amino acid position corresponding to the amino acid in position 366 in the parent antibody.
Furthermore, the term "a substitution" includes a substitution into any one of the other nineteen natural amino acids, or into other amino acids, such as non- natural amino acids. For example, a substitution of amino acid T in position 3 includes each of the following substitutions: 366A, 366C, 366D, 366G, 366H, 366F, 3661, 366K, 366L, 366M, 366N, 366P, 366Q, 366R, 366S, 366E, 366V, 366W, and 366Y.
The term "full-length antibody" when used herein, refers to an antibody which contains all heavy and light chain constant and variable domains corresponding to those that are normally found in a wild-type antibody of that isotype.
WO 2022/180271 PCT/EP2022/054993 The term "chimeric antibody" refers to an antibody wherein the variable region is derived from a non-human species (e.g. derived from rodents) and the constant region is derived from a different species, such as human. Chimeric antibodies may be generated by genetic engineering. Chimeric monoclonal antibodies for therapeutic applications are developed to reduce antibody immunogenicity.
The term "humanized antibody" refers to a genetically engineered non-human antibody, which contains human antibody constant domains and non-human variable domains modified to contain a high level of sequence homology to human variable domains. This can be achieved by grafting of the six non-human antibody complementarity-determining regions (CDRs), which together form the antigen binding site, onto a homologous human acceptor framework region (FR). In order to fully reconstitute the binding affinity and specificity of the parental antibody, the substitution of framework residues from the parental antibody (i.e. the non-human antibody) into the human framework regions (back-mutations) may be required.
Structural homology modeling may help to identify the amino acid residues in the framework regions that are important for the binding properties of the antibody.
Thus, a humanized antibody may comprise non-human CDR sequences, primarily human framework regions optionally comprising one or more amino acid back- mutations to the non-human amino acid sequence, and, optionally, fully human constant regions. Optionally, additional amino acid modifications, which are not necessarily back-mutations, may be introduced to obtain a humanized antibody with preferred characteristics, such as affinity and biochemical properties.
Humanization of non-human therapeutic antibodies is performed to minimize its immunogenicity in man while such humanized antibodies at the same time maintain the specificity and binding affinity of the antibody of non-human origin.
The term "multispecific antibody" refers to an antibody having specificities for at least two different, such as at least three, typically non-overlapping, epitopes, due to the presence of two or more antigen-binding regions. Such epitopes may be WO 2022/180271 PCT/EP2022/054993 on the same or on different target antigens. If the epitopes are on different targets, such targets may be on the same cell or different cells or cell types.
The term "bispecific antibody" refers to an antibody having specificities for two different, typically non-overlapping, epitopes, due to the presence of two antigen- binding regions. Such epitopes may be on the same or different targets. If the epitopes are on different targets, such targets may be on the same cell or different cells or cell types.
Examples of different classes of bispecific antibodies include but are not limited to (i) IgG-like molecules with complementary CH3 domains to force heterodimerization; (ii) recombinant IgG-like dual targeting molecules, wherein the two sides of the molecule each contain the Fab fragment or part of the Fab fragment of at least two different antibodies; (iii) IgG fusion molecules, wherein full length IgG antibodies are fused to extra Fab fragment or parts of Fab fragment; (iv) Fc fusion molecules, wherein single chain Fv molecules or stabilized diabodies are fused to heavy-chain constant- domains, Fc-regions or parts thereof; (v) Fab fusion molecules, wherein different Fab- fragments are fused together, fused to heavy- chain constant-domains, Fc-regions or parts thereof; and (vi) scFv-and diabody- based and heavy chain antibodies (e.g., domain antibodies, Nanobodies®) wherein different single chain Fv molecules or different diabodies or different heavy-chain antibodies (e.g. domain antibodies, Nanobodies®) are fused to each other or to another protein or carrier molecule fused to heavy-chain constant-domains, Fc- regions or parts thereof.
Examples of IgG-like molecules with complementary CH3 domains molecules include but are not limited to the Triomab® (Trion Pharma/Fresenius Biotech), the Knobs-into-Holes (Genentech), CrossMAbs (Roche) and the electrostatically- matched (Amgen, Chugai, Oncomed), the LUZ-Y (Genentech, Wranik et al. J. Biol.
Chern. 2012, 287(52): 43331-9, doi: 10.1074/jbc.M112.397869. Epub 2012 Nov 1), DIG-body and PIG-body (Pharmabcine, WO2010134666, WO2014081202), the Strand Exchange Engineered Domain body (SEEDbody)(EMD Serono), the Biclonics WO 2022/180271 PCT/EP2022/054993 (Merus, WO2013157953), FcAAdp (Regeneron), bispecific IgGl and IgG (Pfizer/Rinat), Azymetric scaffold (Zymeworks/Merck,), mAb-Fv (Xencor), bivalent bispecific antibodies (Roche, WO2009080254) and DuoBody® molecules (Genmab).
Examples of recombinant IgG-like dual targeting molecules include, but are not limited, to Dual Targeting (DT)-Ig (GSK/Domantis, WO2009058383), Two-in-one Antibody (Genentech, Bostrom, et al 2009. Science 323, 1610-1614), Cross-linked Mabs (Karmanos Cancer Center), mAb2 (F-Star), Zybodies™ (Zyngenia, LaFleur et al. MAbs. 2013 Mar-Apr;5(2):208-18), approaches with common light chain, KXBodies (Novlmmune, WO2012023053) and CovX-body® (CovX/Pfizer, Doppalapudi, V.R., et al 2007. Bioorg. Med. Chern. Lett. 17,501-506).
Examples of IgG fusion molecules include but are not limited to Dual Variable Domain (DVD)-Ig (Abbott), Dual domain double head antibodies (Unilever; Sanofi Aventis), IgG-like Bispecific (ImClone/Eli Lilly, Lewis et al. Nat Biotechnol. 20 Feb;32(2): 191-8), Ts2Ab (Medlmmune/AZ, Dimasi et al. J Mol Biol. 2009 Oct ;393(3):672-92) and BsAb (Zymogenetics, WO2010111625), HERCULES (Biogen Idee), scFv fusion (Novartis), scFv fusion (Changzhou Adam Biotech Inc) and TvAb (Roche).
Examples of Fc fusion molecules include but are not limited to scFv/Fc Fusions (Academic Institution, Pearce et al Biochem Mol Biol Int. 1997 Sep;42(6): 1179), SCORPION (Emergent BioSolutions/Trubion, Blankenship JW, et al. AACR 100th Annual meeting 2009 (Abstract #5465); Zymogenetics/BMS, WO2010111625), Dual Affinity Retargeting Technology (Fc-DARTTM) (MacroGenics) and Dual(ScFv)2- Fab (National Research Center for Antibody Medicine - China).
Examples of Fab fusion bispecific antibodies include but are not limited to F(ab)2 (Medarex/AMGEN), Dual-Action or Bis-Fab (Genentech), Dock-and-Lock® (DNL) (ImmunoMedics), Bivalent Bispecific (Biotecnol) and Fab-Fv (UCB-Celltech).
Examples of scFv-, diabody-based and domain antibodies include but are not limited to Bispecific T Cell Engager (BiTE®) (Micromet, Tandem Diabody (Tandab) WO 2022/180271 PCT/EP2022/054993 (Affimed), Dual Affinity Retargeting Technology (DARTTM) (MacroGenics), Single- chain Diabody (Academic, Lawrence FEBS Lett. 1998 Apr 3;425(3) :479-84), TCR- like Antibodies (AIT, ReceptorLogics), Human Serum Albumin ScFv Fusion (Merrimack, WO2010059315) and COMBODY molecules (Epigen Biotech, Zhu et al.
Immunol Cell Biol. 2010 Aug;88(6):667-75), dual targeting nanobodies® (Ablynx, Hmila et al., FASEB J. 2010), dual targeting heavy chain only domain antibodies.
In some embodiments, the multispecific antibody of the invention is in a VHH-Fc format, i.e. the antibody comprises two or more single-domain antigen-binding regions that are linked to each other via a human Fc region dimer. In this format, each single-domain antigen-binding region is fused to an Fc region polypeptide and the two fusion polypeptides form a dimeric bispecific antibody via disulfide bridges in the hinge region. Such constructs typically do not contain full, or any, CHI or light chain sequences. Figure 12B of WO06064136 provides an illustration of an example of this embodiment.
In the context of antibody binding to an antigen, the terms "binds" or "specifically binds" refer to the binding of an antibody to a predetermined antigen or target (e.g. human CD123 or V82) to which binding typically is with an affinity corresponding to a KD of about 106־ M or less, e.g. 107־ M or less, such as about 10־ 8 M or less, such as about 109־ M or less, about 1010־ M or less, or about 1011־ M or even less, e.g. when determined using flow cytometry as described in the Examples herein. Alternatively, KD values can be determined using for instance surface plasmon resonance (SPR) technology in a BIAcore T200 or bio-layer interferometry (BLI) in an Octet RED96 instrument using the antigen as the ligand and the binding moiety or binding molecule as the analyte. Specific binding means that the antibody binds to the predetermined antigen with an affinity corresponding to a KD that is at least ten-fold lower, such as at least 100-fold lower, for instance at least 1,000 fold lower, such as at least 10,000 fold lower, for instance at least 100,000 fold lower than its affinity for binding to a non-specific antigen (e.g., BSA, casein) other than the predetermined antigen or a closely-related antigen. The degree with which the WO 2022/180271 PCT/EP2022/054993 affinity is lower is dependent on the KD of the binding moiety or binding molecule, so that when the KD of the binding moiety or binding molecule is very low (that is, the binding moiety or binding molecule is highly specific), then the degree with which the affinity for the antigen is lower than the affinity for a non-specific antigen may be at least 10,000-fold. The term "KD" (M), as used herein, refers to the dissociation equilibrium constant of a particular interaction between the antigen and the binding moiety or binding molecule.
In the context of the present invention, "competition" or "able to compete" or "competes" refers to any detectably significant reduction in the propensity for a particular binding molecule (e.g. a CD123 antibody) to bind a particular binding partner (e.g. CD123) in the presence of another molecule (e.g. a different CD1 antibody) that binds the binding partner. Typically, competition means an at least about 25 percent reduction, such as an at least about 50 percent, e.g. an at least about 75 percent, such as an at least 90 percent reduction in binding, caused by the presence of another molecule, such as an antibody, as determined by, e.g., ELISA analysis or flow cytometry using sufficient amounts of the two or more competing molecules, e.g. antibodies. Additional methods for determining binding specificity by competitive inhibition may be found in for instance Harlow et al., Antibodies: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 1988), Colligan et al., eds., Current Protocols in Immunology, Greene Publishing Assoc, and Wiley InterScience N. Y., (1992, 1993), and Muller, Meth.
Enzymol. 92, 589-601 (1983)). In one embodiment, the antibody of the present invention binds to the same epitope on CD123 as antibody 1D2 or 1A3 and/or to the same epitope on V62 as antibody 5C8, 6H4, 6C1, 5D3 (WO2015156673) or 5C8varl (WO2020060405). The epitope of 5C8 has been determined to include residues S33, S43 and K45 (SEQ ID NO:48). The epitope of 6H4 has been determined to include residues R139, K152, S189 and S191 (SEQ ID NO:48). There are several methods available for mapping antibody epitopes on target antigens known in the art, including but not limited to: crosslinking coupled mass WO 2022/180271 PCT/EP2022/054993 spectrometry, allowing identification of peptides that are part of the epitope, and X-ray crystallography identifying individual residues on the antigen that form the epitope. Epitope residues can be determined as being all amino acid residues with at least one atom less than or equal to 5 A from the antibody. 5 A was chosen as the epitope cutoff distance to allow for atoms within a van der Waals radius plus a possible water-mediated hydrogen bond. Next, epitope residues can be determined as being all amino acid residues with at least one atom less than or equal to 8 A.
Less than or equal to 8 A is chosen as the epitope cutoff distance to allow for the length of an extended arginine amino acid. Crosslinking coupled mass spectrometry begins by binding the antibody and the antigen with a mass labeled chemical crosslinker. Next the presence of the complex is confirmed using high mass MALDI detection. Because after crosslinking chemistry the Ab/Ag complex is extremely stable, many various enzymes and digestion conditions can be applied to the complex to provide many different overlapping peptides. Identification of these peptides is performed using high resolution mass spectrometry and MS/MS techniques. Identification of the crosslinked peptides is determined using mass tag linked to the cross-linking reagents. After MS/MS fragmentation and data analysis, peptides that are crosslinked and are derived from the antigen are part of the epitope, while peptides derived from the antibody are part of the paratope. All residues between the most N- and C-terminal crosslinked residue from the individual crosslinked peptides found are considered to be part of the epitope or paratope.
The terms "first" and "second" antigen-binding regions when used herein do not refer to their orientation / position in the antibody, i.e. they have no meaning with regard to the N- or C-terminus. The terms "first" and "second" only serve to correctly and consistently refer to the two different antigen-binding regions in the claims and the description.
WO 2022/180271 PCT/EP2022/054993 "Capable of binding human CD123" means that the antibody can bind human CD123 as a separate molecule and/or as part of a CD123/CD131 complex. However, the antibody will not bind to CD131 as a separate molecule.
"Capable of binding the V62 chain of a Vy9V62-TCR" means that the antibody can bind the V62 chain as a separate molecule and/or as part of a Vy9V62-TCR.
However, the antibody will not bind to the Vy9 chain as a separate molecule. "% sequence identity", when used herein, refers to the number of identical nucleotide or amino acid positions shared by different sequences (i.e., % identity = # of identical positions/total # of positions x 100), taking into account the number of gaps, and the length of each gap, which need to be introduced for optimal alignment. The percent identity between two nucleotide or amino acid sequences may e.g. be determined using the algorithm of E. Meyers and W. Miller, Comput. Appl. Biosci 4, 11-17 (1988) which has been incorporated into the ALIGN program (version 2.0), using a PAM120 weight residue table, a gap length penalty of 12 and a gap penalty of 4.
Further aspects and embodiments of the invention As described above, in a first main aspect, the invention relates to a multispecific antibody comprising a first antigen-binding region capable of binding human CD1 and a second antigen-binding region capable of binding the V82 chain of a human Vy9V82 T cell receptor.
In one embodiment, the multispecific antibody is a bispecific antibody. In another embodiment, the multispecific antibody is a trispecific antibody. In another embodiment, the first antigen-binding region is a single-domain antibody, for example a single-domain antibody which consists of a heavy chain variable region.
In another embodiment, the second antigen-binding region is a single-domain antibody, for example a single-domain antibody which consists of a heavy chain variable region. In a further embodiment, both the first antigen-antigen binding region and the second antigen-binding region are single-domain antibodies, for WO 2022/180271 PCT/EP2022/054993 example single-domain antibodies which each consist of a heavy chain variable region.
In a further embodiment, the multispecific antibody is a bispecific antibody, wherein the first antigen-binding region is a single-domain antibody and the second antigen-binding region is a single-domain antibody. Said bispecific antibody may optionally comprise further sequences, such as a linker and/or an immunoglobulin Fc region.
In one embodiment, the multispecific antibody competes (i.e. is able to compete) for binding to human CD123 with an antibody having the sequence set forth in SEQ ID NO: 1, preferably wherein the multispecific antibody binds the same epitope on human CD123 as an antibody having the sequence set forth in SEQ IDNO:1. In one embodiment, the multispecific antibody binds to an epitope comprising one or more residues in the region from S203 to R273, such as an epitope fully comprised within the region from S203 to R273, determined as described in Example 11 herein.
In another embodiment, the multispecific antibody binds to an epitope on human CD123 which comprises one or more residues in the region S203 to T2 and one or more residues in the region H221 to K227 and one or more residues in the region Y238 to K244 and one or more residues in the region Y268 to R2 (Figure 14).
In another embodiment, the multispecific antibody binds to an epitope on human CD123 which comprises one, more of all of the residues S203, T209, T214, H221, H225, K227, Y238, K244, Y268, T269 and R273 (Figure 14).
In one embodiment, the first antigen-binding region comprises the VH CDR sequence set forth in SEQ ID NO:2, the VH CDR2 sequence set forth in SEQ ID NO:3 and the VH CDR3 sequence set forth in SEQ ID NO:4.
In one embodiment, in SEQ ID NO:2, X! is G. In another embodiment, X! is S.
In one embodiment, in SEQ ID NO:3, X2 is A. In another embodiment, X2 is T.
In one embodiment, in SEQ ID NO:4, X3 is Y. In another embodiment, X3 is F.
WO 2022/180271 PCT/EP2022/054993 In one embodiment, X! is G, X2 is A and X3 is Y.
In another embodiment, X! is G, X2 is A and X3 is F.
In another embodiment, X! is G, X2 is T and X3 is Y.
In another embodiment, X! is G, X2 is T and X3 is F.
In one embodiment, X! is S, X2 is A and X3 is Y.
In another embodiment, X! is S, X2 is A and X3 is F.
In another embodiment, X! is S, X2 is T and X3 is Y.
In another embodiment, X! is S, X2 is T and X3 is F.
In one embodiment, the first antigen-binding region comprises or consists of: the sequence set forth in SEQ ID NO:1, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:1.
In another embodiment, the first antigen-binding region comprises or consists of a sequence selected from the group of sequences set forth in SEQ ID NO:25 to 34, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to a sequence selected from the group of sequences set forth in SEQ ID NO:25 to 34.
In another embodiment, the multispecific antibody competes for binding to human CD123 with an antibody with an antibody having the sequence set forth in SEQ ID NO:9, preferably wherein the multispecific antibody binds the same epitope on human CD123 as an antibody having the sequence set forth in SEQ ID NO:9.
In one embodiment, the multispecific antibody binds to an epitope comprising one or more residues in the region from H225 to T267, such as an epitope fully comprised within the region from H225 to T267, determined as described in Example 11 herein.
In another embodiment, the multispecific antibody binds to an epitope on human CD123 which comprises one or more residues in the region H225 and R2 and one or more residues in the region T251 to T267.
In another embodiment, the multispecific antibody binds to an epitope on WO 2022/180271 PCT/EP2022/054993 human CD123 which comprises one, more of all of the residues H225, H231, R234, T251, R255 and T267.
In one embodiment, the first antigen-binding region comprises the VH CDR sequence set forth in SEQ ID NO: 10, the VH CDR2 sequence set forth in SEQ ID NO: 11 and the VH CDR3 sequence set forth in SEQ ID NO: 12.
In one embodiment, the first antigen-binding region comprises or consists of: the sequence set forth in SEQ ID NO:9, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:9.
As described above, the multispecific antibody of the invention comprises a second antigen-binding region capable of binding the V82 chain of a human V/9V82- T cell receptor. V62 is part of the delta chain of the Vy9V62-TCR. An antibody capable of binding to human V82 may bind an epitope that is entirely located within the V82 region or bind an epitope that is a combination of residues in V82 region and the constant region of the delta chain. In one embodiment, the multispecific antibody is able to activate human V/9V82 T cells. The activation of the Vy9V62 T cells may be measured through gene-expression and/or (surface) marker expression (e.g., activation markers, such as CD25, CD69, or CD107a) and/or secretory protein (e.g., cytokines or chemokines) profiles. In a preferred embodiment, the multispecific antibody is able to induce activation (e.g. upregulation of CD69 and/or CD25 expression) resulting in degranulation marked by an increase in CD107a expression (see the Examples herein) and/or cytokine production (e.g. TNFa, IFNy) by Vy9V62T cells. Preferably, a multispecific antibody of the present invention is able to increase the number of cells positive for CD107a at least 2-fold, such as at least 5-fold, when tested as described in the Examples herein. In another preferred embodiment, the multispecific antibody of the invention has an EC50 value for increasing the percentage of CD107a positive cells of 50 pM or less, such as 25 pM or less, e.g. 20 pM or less, such as 15 pM or less, e.g. 10 pM or less, when tested using Vy9V62 T cells and Clr-neo target cells as WO 2022/180271 PCT/EP2022/054993 described herein in the Examples.
Several antibodies which bind to V62 have been described in WO20151566 and their antigen-binding regions or at least the CDR sequences thereof can be incorporated in the multispecific antibody of the invention.
In one embodiment, the multispecific antibody competes for binding to human V82 with an antibody having the sequence set forth in SEQ ID NO: 17 wherein X4 is Y.
In a further embodiment, the multispecific antibody binds the same epitope on human V82 as an antibody having the sequence set forth in SEQ ID NO: 17.
In one embodiment, the multispecific antibody competes for binding to human V82 with an antibody having the sequence set forth in SEQ ID NO:36, preferably the multispecific antibody binds the same epitope on human V82 as an antibody having the sequence set forth in SEQ ID NO:36.
In one embodiment, the multispecific antibody competes for binding to human V82 with an antibody having the sequence set forth in SEQ ID NO:37, preferably the multispecific antibody binds the same epitope on human V82 as an antibody having the sequence set forth in SEQ ID NO:37.
In one embodiment, the multispecific antibody competes for binding to human V82 with an antibody having the sequence set forth in SEQ ID NO:38, preferably the multispecific antibody binds the same epitope on human V82 as an antibody having the sequence set forth in SEQ ID NO:38.
In one embodiment of the multispecific antibody of the invention, the second antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 18, the VH CDR2 sequence set forth in SEQ ID NO: 19 and the VH CDR sequence set forth in SEQ ID NO:20. In one embodiment, X4 in SEQ ID NO:20 is Y.
In another embodiment, X4 in SEQ ID NO:20 is F. In another embodiment, X4 in SEQ ID NO:20 is S.
In one embodiment of the multispecific antibody of the invention, the second antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO:40 WO 2022/180271 PCT/EP2022/054993 and the VH CDR3 sequence set forth in SEQ ID NO:41, preferably the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:36, In one embodiment of the multispecific antibody of the invention, the second antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO:42, the VH CDR2 sequence set forth in SEQ ID NO:43 and the VH CDR sequence set forth in SEQ ID NO:44, preferably the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:37, In one embodiment of the multispecific antibody of the invention, the second antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO:45, the VH CDR2 sequence set forth in SEQ ID NO:46 and the VH CDR sequence set forth in SEQ ID NO:47, preferably the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:38.
In one embodiment of the multispecific antibody of the invention, the second antigen-binding region is humanized.
In a further embodiment, the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO: 17. In one embodiment, X4 in SEQ ID NO: 17 is Y. In another embodiment, X4 in SEQ ID NO: 17 is F. In another embodiment, X4 in SEQ ID NO: 17 is S.
In a preferred embodiment of the multispecific antibody of the invention, WO 2022/180271 PCT/EP2022/054993 (i) the first antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO:2, the VH CDR2 sequence set forth in SEQ ID NO:3 and the VH CDR3 sequence set forth in SEQ ID NO:4 and the second antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 18, the VH CDR2 sequence set forth in SEQ ID NO: 19 and the VH CDR3 sequence set forth in SEQ ID NO:20, or (ii) the first antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 10, the VH CDR2 sequence set forth in SEQ ID NO: 11 and the VH CDR3 sequence set forth in SEQ ID NO: 12 and the second antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 18, the VH CDR2 sequence set forth in SEQ ID NO: 19 and the VH CDR3 sequence set forth in SEQ ID NO:20.
In further preferred embodiments of the multispecific antibody of the invention, (i) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:1 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or (ii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:9 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or (iii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:25 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or (iv) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:26 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or WO 2022/180271 PCT/EP2022/054993 (v) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:27 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or (vi) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:28 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or (vii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:29 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or (viii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:30 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or (ix) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:31 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or (x) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:32 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or (xi) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:33 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y, or (xii) the first antigen-binding region comprises or consists of the sequence set WO 2022/180271 PCT/EP2022/054993 forth in SEQ ID NO:34 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, wherein optionally X4 is Y.
In further preferred embodiments of the multispecific antibody of the invention, (i) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:1 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or (ii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:9 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or (iii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:25 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or (iv) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:26 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or (v) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:27 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or (vi) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:28 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or (vii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:29 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or (viii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:30 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or (ix) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:31 and the second antigen-binding region comprises or WO 2022/180271 PCT/EP2022/054993 consists of the sequence set forth in SEQ ID NO:36, or (x) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:32 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or (xi) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:33 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or (xii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:34 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36.
In further preferred embodiments of the multispecific antibody of the invention, (i) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:1 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or (ii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:9 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or (iii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:25 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or (iv) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:26 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or (v) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:27 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or (vi) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:28 and the second antigen-binding region comprises or WO 2022/180271 PCT/EP2022/054993 consists of the sequence set forth in SEQ ID NO:37, or (vii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:29 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or (viii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:30 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or (ix) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:31 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or (x) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:32 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or (xi) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:33 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or (xii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:34 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37.
In further preferred embodiments of the multispecific antibody of the invention, (i) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:1 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or (ii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:9 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or (iii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:25 and the second antigen-binding region comprises or WO 2022/180271 PCT/EP2022/054993 consists of the sequence set forth in SEQ ID NO:38, or (iv) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:26 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or (v) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:27 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or (vi) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:28 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or (vii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:29 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or (viii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:30 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or (ix) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:31 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or (x) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:32 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or (xi) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:33 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or (xii) the first antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:34 and the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38.
WO 2022/180271 PCT/EP2022/054993 The first and second antigen-binding regions in the multispecific antibody may be arranged in various ways. In one embodiment, antigen-binding regions are connected to each other via a linker, such as a covalent linker. In one embodiment, the first antigen-binding region and the second antigen-binding region are covalently linked to each other via a peptide linker, e.g. a linker having a length of from 1 to 20 amino acids, e.g. from 1 to 10 amino acids, such as 2, 3, 4, 5, 6, 7, 8 or 10 amino acids. In one embodiment, the peptide linker comprises or consists of a sequence of 4 glycines following by a serine.
In some embodiments, the first antigen-binding region capable of binding human CD123 is located N-terminally of the second antigen-binding region capable of binding the human V82 chain. In another embodiment, the first antigen-binding region capable of binding human CD123 is located C-terminally of the second antigen-binding region capable of binding the human V82 chain.
Multispecific antibodies of the invention, such as bispecific antibodies, may contain further molecules, domains or polypeptide sequences beyond the first and second antigen-binding regions. In one embodiment, the multispecific antibody further comprises a half-life extension domain, i.e. a domain which prolongs the half-life of the molecules in the circulation of a human patient. In one embodiment, the multispecific antibody has a terminal half-life that is longer than about 1 hours when administered to a human subject. Most preferably the terminal half-life is 336 hours or longer. The "terminal half-life" of an antibody, when used herein refers to the time taken for the serum concentration of the polypeptide to be reduced by 50%, in vivo in the final phase of elimination.
In one embodiment, the multispecific antibody comprises an Fc region, preferably a human Fc region. In one embodiment, the multispecific antibody is in a VHH-Fc format, i.e. the antibody comprises two or more single-domain antigen- binding regions that are linked to each other via a human Fc region dimer, wherein each single-domain antigen-binding region is fused to an Fc region polypeptide WO 2022/180271 PCT/EP2022/054993 (without CHI or light chain sequences) and the two fusion polypeptides form a dimeric bispecific antibody via disulfide bridges in the hinge region.
Various method for making bispecific antibodies have been described in the art, e.g. reviewed by Brinkmann and Kontermann (2017) MAbs 9:182 and Labrijn et al (2019) Nature Reviews Drug Discovery 18: 585. In one embodiment of the present invention, the Fc region is a heterodimer comprising two Fc polypeptides, wherein the first antigen-binding region is fused to the first Fc polypeptide and the second antigen-binding region is fused to the second Fc polypeptide and wherein the first and second Fc polypeptides comprise asymmetric amino acid mutations that favor the formation of heterodimers over the formation of homodimers (see e.g. Ridgway et al. (1996) ‘Knobs-into-holes‘ engineering of antibody CH3 domains for heavy chain heterodimerization. Protein Eng 9:617). In a further embodiment hereof, the CH3 regions of the Fc polypeptides comprise said asymmetric amino acid mutations, preferably the first Fc polypeptide comprises a T366W substitution and the second Fc polypeptide comprises T366S, L368A and Y407V substitutions, or vice versa, wherein the amino acid positions correspond to human IgGl according to the EU numbering system. In a further embodiment, the cysteine residues at position 220 in the first and second Fc polypeptides have been deleted or substituted, wherein the amino acid position corresponds to human IgGl according to the EU numbering system. In a further embodiment, the region comprises the sequence set forth in SEQ ID NO:35.
In some embodiments, the first and/or second Fc polypeptides contain mutations that render the Fc region inert, i.e. unable to mediate effector functions.
In one embodiment, the first and second Fc polypeptides comprise a mutation at position 234 and/or 235, preferably the first and second Fc polypeptide comprise an L234F and an L235E substitution, wherein the amino acid positions correspond to human IgGl according to the EU numbering system.
In a preferred embodiment, - the first antigen-binding region comprises the VH CDR1 sequence set forth WO 2022/180271 PCT/EP2022/054993 in SEQ ID NO:2, the VH CDR2 sequence set forth in SEQ ID NO:3 and the VH CDR3 sequence set forth in SEQ ID NO:4 and the second antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 18, the VH CDR2 sequence set forth in SEQ ID NO: 19 and the VH CDR3 sequence set forth in SEQ ID NO:20, and - the first Fc polypeptide comprises the sequence set forth in SEQ ID NO: and the second Fc polypeptide comprises the sequence set forth in SEQ ID NO:22, or vice versa.
In another preferred embodiment, - the first antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 10, the VH CDR2 sequence set forth in SEQ ID NO: 11 and the VH CDR3 sequence set forth in SEQ ID NO: 12 and the second antigen- binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 18, the VH CDR2 sequence set forth in SEQ ID NO: 19 and the VH CDR3 sequence set forth in SEQ ID NO:20, and - the first Fc polypeptide comprises the sequence set forth in SEQ ID NO: and the second Fc polypeptide comprises the sequence set forth in SEQ ID NO:22, or vice versa.
In a further preferred embodiment, the antibody of the invention consists of: (i) a first polypeptide chain consisting of: a first antigen-binding region consisting of a sequence selected from the group consisting of the sequences set forth in SEQ ID NO:1, 9 and 25 to 34, the sequence set forth in SEQ ID NO:35, and the sequence set forth in SEQ ID NO:21, and (i) a second polypeptide chain consisting of: a second antigen-binding region consisting of the sequence set forth in SEQ ID NO: 17, wherein X4 is Y, the sequence set forth in SEQ ID NO:35, and the sequence set forth in SEQ ID NO:22.
In a further preferred embodiment, the antibody of the invention consists of: (i) a first polypeptide chain consisting of: a first antigen-binding region consisting of a sequence selected from the group consisting of the sequences set forth in SEQ WO 2022/180271 PCT/EP2022/054993 ID NO:1, 9 and 25 to 34, the sequence set forth in SEQ ID NO:35, and the sequence set forth in SEQ ID NO:22, and (i) a second polypeptide chain consisting of: a second antigen-binding region consisting of the sequence set forth in SEQ ID NO: 17, wherein X4 is Y, the sequence set forth in SEQ ID NO:35, and the sequence set forth in SEQ ID NO:21.
In one embodiment, the multispecific antibody of the invention is capable of mediating killing of CD123-expressing cells, such as C1R-neo cells 0rTHP-l cells, by Vy9V62 T cells.
Preferably, the antibody is capable of inducing killing C1R-neo cells through activation of Vy9V62 T cells with an EC50 value of 50 pM or less, such as 25 pM or less, e.g. 20 pM or less, such as 15 pM or less, e.g. 10 pM or less, or even 5 pM or less, such as 2 pM or less when tested as described in Example 5 herein.
In another embodiment, the antibody is capable of inducing killing THP-1 cells through activation of Vy9V62 T cells with an EC50 value of 100 pM or less, such as 50 pM or less, such as 25 pM or less, e.g. 20 pM or less, such as 15 pM or less, e.g. pM or less, or even 5 pM or less, such as 2 pM or less when tested as described in Example 5 herein.
In a further embodiment, the multispecific antibody is capable of mediating killing of human patient-derived CD123-expressing bone-marrow-derived AML tumor cells. Such killing may e.g. be determined as described in Example 6 herein.
In one embodiment, the multispecific antibody of the invention is capable of mediating specific cell death of more than 25%, such as more than 50%, at a concentration of 100 fM, as determined in the assay described in Example 6 herein.
In a further embodiment, the multispecific antibody is not capable of mediating killing of CD123-negative cells, such as CD123 negative human cells.
In a further embodiment, the multispecific antibody of the invention is capable of binding to the transiently CD123-expressing 293F cells with an EC50 of 50 nM or less, such as 20 nM or less, e.g. 10 nM or less, such as 5 nM or less, when tested WO 2022/180271 PCT/EP2022/054993 as described in Example 3 herein.
In a further embodiment, the multispecific antibody of the invention is capable of binding to a recombinant CD123-Fc fusion protein with an EC50 of 50 nM or less, such as 20 nM or less, e.g. 10 nM or less, such as 5 nM or less, when tested as described in Example 4 herein.
In a further main aspect, the invention relates to an antibody comprising a first antigen-binding region capable of binding human CD123, wherein the first antigen- binding region is a single-domain antibody comprising: (i) VH CDR1 sequence set forth in SEQ ID NO:2, the VH CDR2 sequence set forth in SEQ ID NO:3 and the VH CDR3 sequence set forth in SEQ ID NO:4, wherein preferably the first antigen-binding region comprises or consists of: a sequence selected from the group of sequences set forth in SEQ ID NO:1, 25 to 34, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to a sequence selected from the group of sequences set forth in SEQ ID NO:1, 25 to 34, or (ii) the VH CDR1 sequence set forth in SEQ ID NO: 10, the VH CDR sequence set forth in SEQ ID NO: 11 and the VH CDR3 sequence set forth in SEQ ID NO: 12, wherein preferably the first antigen-binding region comprises or consists of: the sequence set forth in SEQ ID NO:9, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:9.
In one embodiment, in SEQ ID NO:2, X! is G. In another embodiment, X! is S.
In one embodiment, in SEQ ID NO:3, X2 is A. In another embodiment, X2 is T.
In one embodiment, in SEQ ID NO:4, X3 is Y. In another embodiment, X3 is F.
In one embodiment, X! is G, X2 is A and X3 is Y.
In another embodiment, X! is G, X2 is A and X3 is F.
WO 2022/180271 PCT/EP2022/054993 In another embodiment, X! is G, X2 is T and X3 is Y.
In another embodiment, X! is G, X2 is T and X3 is F.
In one embodiment, X! is S, X2 is A and X3 is Y.
In another embodiment, X! is S, X2 is A and X3 is F.
In another embodiment, X! is S, X2 is T and X3 is Y.
In another embodiment, X! is S, X2 is T and X3 is F.
In a further main aspect, the invention relates to a pharmaceutical composition comprising an antibody, such as a multispecific antibody, according to the invention as described herein and a pharmaceutically-acceptable excipient.
Antibodies may be formulated with pharmaceutically-acceptable excipients in accordance with conventional techniques such as those disclosed in (Rowe et al., Handbook of Pharmaceutical Excipients, 2012 June, ISBN 9780857110275). The pharmaceutically-acceptable excipient as well as any other carriers, diluents or adjuvants should be suitable for the antibodies and the chosen mode of administration. Suitability for excipients and other components of pharmaceutical compositions is determined based on the lack of significant negative impact on the desired biological properties of the chosen antibody or pharmaceutical composition of the present invention (e.g., less than a substantial impact (10% or less relative inhibition, 5% or less relative inhibition, etc.) upon antigen binding).
A pharmaceutical composition may include diluents, fillers, salts, buffers, detergents (e.g., a nonionic detergent, such as Tween-20 or Tween-80), stabilizers (e.g., sugars or protein-free amino acids), preservatives, tissue fixatives, solubilizers, and/or other materials suitable for inclusion in a pharmaceutical composition. Further pharmaceutically-acceptable excipients include any and all suitable solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonicity agents, antioxidants and absorption-delaying agents and the like that are physiologically compatible with an antibody of the present invention.
In a further main aspect, the invention relates to the multispecific antibody WO 2022/180271 PCT/EP2022/054993 according to the invention as described herein for use as a medicament.
A multispecific antibody according to the invention enables creating a microenvironment that is beneficial for killing of tumor cells, in particular CD123- positive tumor cells, by Vy9V62 T cells.
Accordingly, in a further main aspect, the invention relates to the multispecific antibody according to the invention as described herein for use in the treatment of cancer. In a further main aspect, the invention relates to the multispecific antibody according to the invention as described herein for use in the treatment of acute myeloid leukemia, B-cell acute lymphoblastic leukemia, hairy cell leukemia, Hodgkin lymphoma, blastic plasmacytoid dendritic neoplasm, chronic myeloid leukemia, chronic lymphocytic leukemia, B-cell chronic lymphoproliferative disorders or myelodysplastic syndrome.
Similarly, the invention relates to a method of treating a disease comprising administration of a multispecific antibody according to the invention as described herein to a human subject in need thereof. In one embodiment, the disease is cancer, such as acute myeloid leukemia.
In some embodiments, the antibody is administered as monotherapy. However, antibodies of the present invention may also be administered in combination therapy, i.e., combined with other therapeutic agents relevant for the disease or condition to be treated.
"Treatment" or "treating" refers to the administration of an effective amount of an antibody according to the present invention with the purpose of easing, ameliorating, arresting, eradicating (curing) or preventing symptoms or disease states. An "effective amount" refers to an amount effective, at dosages and for periods of time necessary, to achieve a desired therapeutic result. An effective amount of a polypeptide, such as an antibody, may vary according to factors such as the disease stage, age, sex, and weight of the individual, and the ability of the antibody to elicit a desired response in the individual. An effective amount is also one in which any toxic or detrimental effects of the antibody are outweighed by the WO 2022/180271 PCT/EP2022/054993 therapeutically beneficial effects. An exemplary, non-limiting range for an effective amount of an antibody of the present invention is about 0.1 ug/kg to 100 mg/kg, such as about 1 ug/kg to 50 mg/kg, for example about 0.01 to 20 mg/kg, such as about 0.1 to 10 mg/kg, for instance about 0.5, about 0.3, about 1, about 3, about , or about 8 mg/kg. Administration may be carried out by any suitable route, but will typically be parenteral, such as intravenous, intramuscular or subcutaneous.
Multispecific antibodies of the invention are typically produced recombinantly, i.e. by expression of nucleic acid constructs encoding the antibodies in suitable host cells, followed by purification of the produced recombinant antibody from the cell culture. Nucleic acid constructs can be produced by standard molecular biological techniques well-known in the art. The constructs are typically introduced into the host cell using an expression vector. Suitable nucleic acid constructs and expression vectors are known in the art. Host cells suitable for the recombinant expression of antibodies are well-known in the art, and include CHO, HEK-293, Expi293F, PER- C6, NS/0 and Sp2/0 cells.
Accordingly, in a further aspect, the invention relates to a nucleic acid construct encoding an antibody of the invention, such as multispecific antibody according to the invention. In one embodiment, the construct is a DNA construct. In another embodiment, the construct is an RNA construct.
In a further aspect, the invention relates to an expression vector comprising a nucleic acid construct encoding a multispecific antibody according to the invention.
In a further aspect, the invention relates to a host cell comprising one or more nucleic acid constructs encoding a multispecific antibody according to the invention or an expression vector comprising a nucleic acid construct encoding a multispecific antibody according to the invention.
Table 1: Sequence listing.
SEQ ID. code Description Sequence WO 2022/180271 PCT/EP2022/054993 1 1D2 VHH EVQLVESGGGLVQAGGSLRLSCAASGRTASSYVM GWFRQAPGKEREFVAVINWNGDSTYYTDSVKGRF AISRDNAKNTVYLQMNSLKPEDTAVYYCAADTRRE WYRDGYWGPPARYEYDYRGQGTQVTVSS 2 1D2 CDR1 GRTASSYVMX1, wherein X! is G or S 3 1D2 CDR2 VINWNGDSTYYX2DSVKG, wherein X2 is A or T 4 1D2 CDR3 DTRREWYRDGX3WGPPARYEYDY, wherein X3 is Y or F 1D2 FR1 EVQLVESGGGLVQAGGSLRLSCAAS 6 1D2 FR2 WFRQAPGKEREFVA 7 1D2 FR3 RFAISRDNAKNTVYLQMNSLKPEDTAVYYCAA 8 1D2 FR4 RGQGTQVTVSS 9 1A3 VHH EVQLVESGGGLVQAGGSLRLSCAASGRAINTYAM AWFRQAPGKERDFVATISYSGGTTDYAGSVKGRF TISRDNAENTVYLQMNSLKPEDTAVYYCAARDRYN PLARNYNYWGQGTQVTVSS 1A3 CDR1 GRAINTYAMA 11 1A3 CDR2 TISYSGGTTDYAGSVKG 12 1A3 CDR3 RDRYNPLARNYNY 13 1A3 FR1 EVQLVESGGGLVQAGGSLRLSCAAS 14 1A3 FR2 WFRQAPGKERDFVA 1A3 FR3 RFTISRDNAENTVYLQMNSLKPEDTAVYYCAA 16 1A3 FR4 WGQGTQVTVSS 17 5C8var VHH EVQLLESGGGSVQPGGSLRLSCAASGRPFSNYAM SWFRQAPGKEREFVSAISWSGGSTSYADSVKGRF TISRDNSKNTLYLQMNSLRAEDTAVYYCAAQFSGA DX4GFGRLGIRGYEYDYWGQGTQVTVSS, wherein X4 is Y, F or S WO 2022/180271 PCT/EP2022/054993 18 5C8var CDR1 NYAMS 19 5C8var CDR2 AISWSGGSTSYADSVKG 5C8var CDR3 QFSGADX4GFGRLGIRGYEYDY, wherein X4is Y, F or S 21 KiH (hole) LFLE Fc APEFEGGPSVFLFPPKPKDTLMISRTPEVTCVVVDV SHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTY RVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKT ISKAKGQPREPQVYTLPPSRDELTKNQVSLSCAVK GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFF LVSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQK SLSLSPGK 22 KiH (knob) LFLE Fc APEFEGGPSVFLFPPKPKDTLMISRTPEVTCVVVDV SHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTY RVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKT ISKAKGQPREPQVYTLPPSRDELTKNQVSLWCLVK GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFF LYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQK SLSLSPGK 23 Human CD123 M VLLWLTLLLIALPCLLQTKED PN PPITN LRM KAKA QQLTWDLNRNVTDIECVKDADYSMPAVNNSYCQF GAISLCEVTNYTVRVANPPFSTWILFPENSGKPWA GAENLTCWIHDVDFLSCSWAVGPGAPADVQYDLY LNVANRRQQYECLHYKTDAQGTRIGCRFDDISRLS SGSQSSHILVRGRSAAFGIPCTDKFVVFSQIEILTP PNMTAKCNKTHSFMHWKMRSHFNRKFRYELQIQK RMQPVITEQVRDRTSFQLLNPGTYTVQIRARERVY EFLSAWSTPQRFECDQEEGANTRAWRTSLLIALGT LLALVCVFVICRRYLVMQRLFPRIPHMKDPIGDSFQ NDKLVVWEAGKAGLEECLVTEVQVVQKT WO 2022/180271 PCT/EP2022/054993 24 Human CD131 MVLAQGLLSMALLALCWERSLAGAEETIPLQTLRC YNDYTSHITCRWADTQDAQRLVNVTLIRRVNEDLL EPVSCDLSDDMPWSACPHPRCVPRRCVIPCQSFV VTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDL QISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEV VYKRLQDSWEDAAI LLSNTSQATLGPEH LM PSSTY VARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDE AQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLF YKPSPDAGEEECSPVLREGLGSLHTRHHCQIPVPD PATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLNV TKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTAT WKDSKTETLQNAHSMALPALEPSTRYWARVRVRT SRTGYNGIWSEWSEARSWDTESVLPMWVLALIVI FLTIAVLLALRFCGIYGYRLRRKWEEKIPNPSKSHLF QNGSAELWPPGSMSAFTSGSPPHQGPWGSRFPEL EGVFPVGFGDSEVSPLTIEDPKHVCDPPSGPDTTPA ASDLPTEQPPSPQPGPPAASHTPEKQASSFDFNGP YLGPPHSRSLPDILGQPEPPQEGGSQKSPPPGSLEY LCLPAGGQVQLVPLAQAMGPGQAVEVERRPSQGA AGSPSLESGGGPAPPALGPRVGGQDQKDSPVAIP MSSGDTEDPGVASGYVSSADLVFTPNSGASSVSL VPSLGLPSDQTPSLCPGLASGPPGAPGPVKSGFEG YVELPPIEGRSPRSPRNNPVPPEAKSPVLNPGERPA DVSPTSPQPEGLLVLQQVGDYCFLPGLGPGPLSLR SKPSSPGPGPEIKNLDQAFQVKKPPGQAVPQVPVI QLFKALKQQDYLSLPPWEVNKPGEVC 1D2 varl EVQLVESGGGLVQPGGSLRLSCAASGRTASSYVM GWFRQAPGKEREFVSVINWNGDSTYYADSVKGRF WO 2022/180271 PCT/EP2022/054993 TISRDNSKNTLYLQMNSLRAEDTAVYYCAADTRRE WYRDGYWGPPARYEYDYRGQGTQVTVSS 26 1D2 var2 EVQLVESGGGLVQPGGSLRLSCAASGRTASSYVM GWVRQAPGKEREWVSVINWNGDSTYYADSVKGR FTISRDNSKNTLYLQMNSLRAEDTAVYYCAADTRR EWYRDGYWGPPARYEYDYRGQGTLVTVSS 27 1D2 var3 EVQLVESGGGLVQPGGSLRLSCAASGRTASSYVM SWFRQAPG KE RE WVAVIN W N G DSTYYADS VKG R FTISRDNSKNTVYLQMNSLRAEDTAVYYCAADTRR EWYRDGYWGPPARYEYDYRGQGTLVTVSS 28 1D2 var4 EVQLVESGGGVVQPGGSLRLSCAASGRTASSYVM S W FRQAPG KE RE WVAVI N W N G DSTYYADS VKG R FTISRDNSKNTLYLQMNSLRAEDTAVYYCAADTRR EWYRDGYWGPPARYEYDYRGQGTTVTVSS 29 1D2 var5 EVQLVESGGGLVQPGGSLRLSCAASGRTASSYVM SWFRQAPGKEREFVAVINWNGDSTYYADSVKGRF TISRDNSKNTVYLQMNSLRAEDTAVYYCAADTRRE WYRDGYWGPPARYEYDYRGQGTLVTVSS 1D2 var6 EVQLVESGGGLVQPGGSLRLSCAASGRTASSYVM GWVRQAPGKGLEWVSVINWNGDSTYYADSVKGR FTISRDNSKNTLYLQMNSLRAEDTAVYYCAADTRR EWYRDGYWGPPARYEYDYRGQGTLVTVSS 31 1D2 var7 EVQLVESGGGLVQPGGSLRLSCAASGRTASSYVM SWVRQAPGKGLEWVSVINWNGDSTYYADSVKGR FTISRDNSKNTLYLQMNSLRAEDTAVYYCAADTRR EWYRDGYWGPPARYEYDYRGQGTLVTVSS 32 1D2 var8 EVQLVESGGGLVQPGGSLRLSCAASGRTASSYVM SW FRQAPG KG LE WVAVI N WN G DSTYYADS VKG R WO 2022/180271 PCT/EP2022/054993 FTISRDNSKNTVYLQMNSLRAEDTAVYYCAADTRR EWYRDGYWGPPARYEYDYRGQGTLVTVSS 33 1D2 var9 EVQLVESGGGLVQAGGSLRLSCAASGRTASSYVM GWFRQAPGKEREWVAVINWNGDSTYYTDSVKGR FAISRDNAKNTVYLQMNSLRAEDTAVYYCAADTRR EWYRDGYWGPPARYEYDYRGQGTQVTVSS 34 1D2 varlO EVQLVESGGGLVQPGGSLRLSCAASGRTASSYVM GWFRQAPGKEREFVSVINWNGDSTYYADSVKGRF TISRDNSKNTLYLQMNSLRAEDTAVYYCAADTRRE WYRDGFWGPPARYEYDYRGQGTQVTVSS Modified hinge AAASDKTHTCPPCP 36 6H4 VHH EVQLVESGGGLVQAGGSLRLSCAASGRPFSNYGM GWFRQAPGKKREFVAGISWSGGSTDYADSVKGR FTISRDNAKNTVYLQMNSLKPEDTAVYYCAAVFSG AETAYYPSDDYDYWGQGTQVTVSS 37 6C1 VHH EVQLVESGGGLVQAGGSLRLSCAASGRPFSNYGM GWFRQAPGKKRESVAGISWSGGSTDYADSVKGR FTISRDNAKNTVYLQMNSLKPEDTAVYYCAAVFSG AETAYYPSDDYDYWGQGTQVTVSS 38 5D3 VHH EVQLVESGGGLVQAGGSLRLSCAASGRPFSNYAM GWFRQAPGKEREFVTVISWSGGSTYYADSVKGRF TISRDNAKNTVYLQMNSLKPEDTAVYYCAAQFSGA STVVAGTALDYDYWGQGTRVTVSS 39 6H4 CDR1 GRPFSNYGMG 40 6H4 CDR2 GISWSGGSTDYADSVKG 41 6H4 CDR3 VFSGAETAYYPSDDYDY 42 6C1 CDR1 GRPFSNYGMG 43 6C1 CDR2 GISWSGGSTDYADSVKG WO 2022/180271 PCT/EP2022/054993 44 6C1 CDR3 VFSGAETAYYPSDDYDY 45 5D3 CDR1 GRPFSNYAMG 46 5D3 CDR2 VISWSGGSTYYADSVKG 47 5D3 CDR3 QFSGASTVVAGTALDYDY 48 V62 MQRISSLIHLSLFWAGVMSAIELVPEHQTVPVSIGV PATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYRE KDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEG SYYC AC DTLG M GG EYTD KLIFG KGTRVTVE PRSQP HTKPSVFVMKNGTNVACLVKEFYPKDIRINLVSSKK ITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQH DNKTVHSTDFEVKTDSTDHVKPKETENTKQPSKS CHKPKAIVHTEKVNMMSLT 49 5C8varl (Y105F) VHH-Fc EVQLLESGGGSVQPGGSLRLSCAASGRPFSNYAM SWFRQAPGKEREFVSAISWSGGSTSYADSVKGRF TISRDNSKNTLYLQMNSLRAEDTAVYYCAAQFSGA DFGFGRLGI RG YEYD Y WGQGTQ VTVS S A AAS D KT HTCPPCPAPEFEGGPSVFLFPPKPKDTLMISRTPEV TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA LPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQV SLWCLVKGFYPSDIAVEWESNGQPENNYKTTPPVL DSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL HNHYTQKSLSLSPGK 50 1D2 VHH-Fc EVQLVESGGGLVQAGGSLRLSCAASGRTASSYVM GWFRQAPGKEREFVAVINWNGDSTYYTDSVKGRF AISRDNAKNTVYLQMNSLKPEDTAVYYCAADTRRE WYRDGYWGPPARYEYDYRGQGTQVTVSSAAASD KTHTCPPCPAPEFEGGPSVFLFPPKPKDTLMISRTP EVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP WO 2022/180271 PCT/EP2022/054993 REEQYNSTYRWVSVLTVLHQDWLNGKEYKCKVSN KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKN QVSLSCAVKGFYPSDIAVEWESNGQPENNYKTTPP VLDSDGSFFLVSKLTVDKSRWQQGNVFSCSVMHE ALHNHYTQKSLSLSPGK 51 7A5 Heavy chain QVQLQQSGAELARPGASVKLSCKASGFTFTDHYIN WVKQRTGQGLEWIGQIYPGNGNTYYNEKFKGKAT LTADKSSSTAYMQLSSLTSEDSAVYFCAPNYGDYTL DFWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGG TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV LQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSN TKVDKKVEPKSCDKTHTCPPCPAPEFEGGPSVFLFP PKPKDTLMISRTPEVTCVWVDVSHEDPEVKFNWYV DGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW LNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVY TLPPSRDELTKNQVSLWCLVKGFYPSDIAVEWESN GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQ GNVFSCSVMHEALHNHYTQKSLSLSPGKAAAEPE A 52 7A5 Light chain DIVMSQSPSSLAVSVGEKVTMSCKSSQSLLYSSN QKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRF TGSGSGTDFTLTISSVKAEDLAVYYCQQYYRYHTF GTGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVC LLNNFYPREAKVQWKVDNALQSGNSQESVTEQDS KDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS PVTKSFNRGEC 53 C-tag AAAEPEA All references, articles, publications, patents, patent publications, and patent applications cited herein are incorporated by reference in their entireties for all WO 2022/180271 PCT/EP2022/054993 purposes. However, mention of any reference, article, publication, patent, patent publication, and patent application herein is not, and should not be, taken as acknowledgment or any form of suggestion that they constitute valid prior art or form part of the common general knowledge in any country in the world.
EXAMPLES Example 1: Selection and identification of anti-CD123 VHH from phage display libraries made from animals immunized with ClR-CDld cells Llama Glama (2 animals) were immunized with CD123 expressing ClR-CDld cells, after which 'immune' VHH phage antibody libraries were made as described (Lameris et al., 2016 Immunology 149:111). These libraries were used for phage selections on captured recombinant human CD123 or directly coated CD1 antigen (extra-cellular domain, Sino Biological). A single, or two consecutive rounds of selection were performed. After one and two rounds of phage selection, single phage clones were screened for binding in ELISA to the recombinant captured antigen. Those clones that scored positive for binding were sequenced and all clones having a different sequence were then tested for binding to the cell line used for immunization in flow cytometry. The VHH clones showing binding in FACS were then selected for further characterization. Eight different clones were identified and termed: 1E2, 1B4, 1A3, 2D11, 1D2, 1E4, 1H1 and 1F1.
Example 2: Synthetic gene synthesis, production and purification of bispecific VHH The sequences of CD123-specific VHH domain antibodies were then re-formatted to bispecific VHH with a V62 specific VHH (5C8var1; SEQ ID NO: 17, wherein X4 is Y) in the orientation: N-term-anti-CD123 VHH-linker-anti-V62 VHH-C-tag. The V specific VHH used is set forth in SEQ ID NO: 17 (wherein X4 is Y). The linker between the two VHH domains was a glycine(G)-serine(S) stretch with the sequence G4S.
The cDNAs encoding these proteins were made by synthetic gene synthesis at Genscript and then cloned into the eukaryotic expression vector pCDNA3.1 + WO 2022/180271 PCT/EP2022/054993 (Thermofisher Scientific) by directional cloning. The proteins were expressed by transient transfection in Hek293E cells and then (after 5 days of expression) purified from the conditioned cell culture supernatant using Capture Select C-tag affinity matrix (Thermo Fisher Scientific) according to the supplier's protocol.
Purified bispecific VHH was always >95% pure as determined by SDS-PAGE analysis using Coomassie staining and contained very low levels of endotoxin (<0.5 EU/mg).
Example 3: Specificity of binding of bispecific anti-CD123 x V32 VHH in ELISA Recombinant, purified CD123 antigen (extra-cellular domain; Sino Biological), or an Fc-fusion of the CD123 antigen (Bio-Techne/R&D Systems) was coated to the wells of an ELISA plate (Greiner) in PBS at a concentration of 2pg/ml. As a negative control, wells were coated with 1% (w/v) BSA. An in-house designed, produced and purified recombinant form of the extra-cellular domains of the human Vy9 and V62 TCR chains fused to a human Fc was also coated as antigen at 2pg/ml. After coating and blocking of the wells with 2% (w/v) BSA, bispecific VHH proteins were tested for binding at a saturating concentration of 50nM and bound VHH was detected using an HRP-labeled anti-VHH antibody (Genscript) and staining using 3, 3', 5, 5'-tetramethylbenzidine (TMB)/H2O2.
Figure 1 shows that in ELISA, only lA3-5C8varl and lD2-5C8varl showed strong and specific binding to both CD123 and the y-TCR (gamma-delta T cell receptor). The other bispecifics bound weakly or did not bind CD123.
Example 4: Specificity of binding of bispecific anti-CD123 x V32 VHH using flow cytometry Expression constructs for human CD123 and for the common p chain of the receptor (CD131) were purchased from Invivogen. Plasmids were transformed to chemically competent DH50 bacteria and a single colony growing on selective medium was used to inoculate a 50ml culture to amplify both constructs. Purified DNA was then WO 2022/180271 PCT/EP2022/054993 transfected to freestyle 293F cells using polyethylene imine (PEI). Either plasmid alone, or a mix of the two plasmids was used for transfection. As negative control, untransfected cells were also used for flow cytometry. A day after transfection, cells were used to test the binding of the bispecific VHH using staining in FACS. Briefly, binding of a saturating concentration of lOOnM bispecific VHH to transfected cells was detected with an AF647-labeled anti-VHH (Genscript) antibody and staining was visualized using a FACS Celesta (Becton and Dickinson).
Figure 2 shows that both lA3-5C8varl and lD2-5C8varl strongly and specifically recognized CD123, when the antigen was expressed alone, or when expressed in conjunction with CD131. lD2-5C8varl gave the strongest signals in flow cytometry.
To determine the apparent affinity of lD2-5C8varl for CD123 using flow cytometry, a concentration range of this bispecific VHH was tested for binding to transiently transfected 293F cells expressing either CD123, CD131 or both CD1 and -131. The former cells (expressing CD131) were used as negative control.
Figure 3 shows again that lD2-5C8varl was exquisitely specific for CD123, as only cells (transiently) expressing CD123, but not CD131 were recognized. In addition, data show that the apparent affinity of lD2-5C8varl binding to CD123 as determined using flow cytometry was approximately 3nM. This value was comparable for binding to CD123 alone, or to co-expressed CD123 and -131.
Example 5: Affinity determination of lD2-5C8varl for binding CD123 using biolayer interferometry (BLI) To determine the kinetics of binding of lD2-5C8varl to CD123, recombinant purified CD123-Fc fusion protein (Bio-Techne/R&D Systems) was loaded to a density of Inm onto anti-human IgG Fc Capture sensors (using a concentration of 5pg/ml) for an Octet Red96e (Sartorius) instrument. Different sensors were then dipped in different concentrations of lD2-5C8varl; dilutions were made in lOx kinetic buffer (lOxKB) provided by the supplier. From the obtained sensorgrams, WO 2022/180271 PCT/EP2022/054993 the kinetic association- and dissociation rate constants were determined by curve fitting.
Figure 4 shows the actual sensorgrams that were used for curve fitting. The latter is depicted as straight lines in the figure. This was used to determine the kinetic association- and dissociation rate constants and thereby the affinity of the anti-CD123 VHH 1D2. Measurements were performed twice and the affinity of 1D2- 5C8var1 for CD123 was measured to be between 3 and 5 nM.
Example 6: CD123-dependent, lD2-5C8varl mediated Vy9V32 T cell activation and T cell mediated target cell cytotoxicity Buffy coats were obtained from Sanquin (Amsterdam, the Netherlands). PBMC were isolated from these buffy coats by Ficoll density gradient centrifugation using described procedures. Highly pure Vy9V62 T cells were obtained by MACS using a V62 specific antibody and these were expanded using published methods (de Bruin et al., 2016 Clin Immunol. 169:128). The CD123-positive B lymphoblast, EBV- transformed C1R neo cell line (CRL-2369) and CD123-positive AML-derived THP- cell line (TIB-202) were obtained from the American type culture collection and cultured according to the supplier's instructions. Target cells were labelled with cell trace violet (CTV) for 20 minutes at 37°C. To measure T cell activation, cells were stained for the activation marker CD107a (or LAMP-1, lysosomal associated membrane protein-1) that becomes cell surface-exposed once cells degranulate. A concentration range of bispecific antibody was incubated for 4 hours with a 1:1 mix of target cells and expanded Vy9V62 T cells (50,000 cells each) in a final volume of lOOpI in the presence of a PE-labeled anti-CD107A antibody. After incubation, cells were washed and stained with a mix of fluorescently-labeled anti-CD3 and anti-Vy9 antibodies to identify the T cells and a live/dead stain (7-AAD). Samples were analyzed using a FACS Celesta (Beckton and Dickinson). To assess T-cell mediated target cell cytotoxicity, essentially the same setup was used, only no anti- CD107A antibody was added and CTV-labeled target cells and Vy9V62 T cells were WO 2022/180271 PCT/EP2022/054993 incubated for 24 hours in the presence of the bispecific VHH. Cells were stained again for CD3 and Vy9 at the end of the assay and analyzed using flow cytometry in the presence of a live/dead stain (7-AAD).
Figure 5 shows that lD2-5C8varl caused potent T cell activation with an EC in the pM range. In the absence of target cells, a high concentration of lD2-5C8varl caused only background activation (data not shown). The potency of lD2-5C8varl to induce T cell activation was slightly dependent on the T cell donor used; EC values ranged between 3 and 13pM.
To determine whether the observed T cell activation would also result in target cell lysis, a cytotoxicity assay was performed using 1:1 effector to target (E:T) ratio and a 24 hour timepoint. Figure 6 shows that lD2-5C8varl potently induced C1R- neo target cell lysis in the presence of expanded Vy9V62 T cells. The EC50 for cytotoxicity was determined by curve fitting to be between 1 and 2 pM, dependent on the T cell donor used (data for two donors are depicted).
The same cytotoxicity assay was repeated with a CD123-positive AML cell line: THP-1. The potency of lD2-5C8varl to induce THP-1 target cell lysis was very comparable: EC50 was measured to be IpM. In contrast: the potency of 1A3- 5C8varl to induce target cell lysis was measured to be around 50pM: Figure 7.
Example 7: Bispecific VHH mediated-, Vy9V32 T cell activation and T cell induced lysis of primary AML cells ,000 bone marrow-derived mononuclear cells from an AML patient were co- cultured overnight at a 1:1 ratio with expanded Vy9V62 T cells derived from a healthy donor. The cells were cultured in the presence of a PE-labeled CD107a antibody and a concentration range of lD2-5C8varl (ranging from lOfM to lOOnM).
The cells were harvested, washed and labeled for 30" at 4 °C with an antibody mix containing fluorescently-labeled anti-CD45, CD117, CD34, CD33 and CD antibodies. After washing, the cells were resuspended in a mixture of live/dead WO 2022/180271 PCT/EP2022/054993 stain (7AAD) and 123 counting beads, and subsequently analyzed using an LSRFortessa flow cytometer.
Figure 8 shows that both bispecific VHH compounds were capable of inducing potent T cell activation dependent on CD123 positive primary AML blasts. In addition, the compounds caused a high level of tumour cell lysis and both showed a significant potency in this cytotoxicity. The EC50 values could not unequivocally be determined from the obtained curves, but were in the fM range (below 1 pM).
Example 8: Humanization of anti-CD123 VHH 1D2 using CDR grafting The 1D2 VHH antibody fragment was humanized using CDR-grafting technology (see e.g. U.S. Patent No. 5,225,539 and Williams, D.G. et al., 2010, Antibody Engineering, volume 1, Chapter 21). First, human germline sequences were identified using IgBLAST (Ye J. et al., 2013, Nucleic Acids Res. 41:W34-40). As closest human germline sequence, V-gene IGVH3-23*04 was identified (78.4% identity). This germline sequence was used to directly graft the llama CDRs (91.8 % identity with human germline IGVH3-23*04), resulting in the following cDNA construct: SEQ ID NO: 31 Next, the NCBI NR database (downloaded Sept 27 2020) was queried using BLASTP (version 2.10.0+) to identify human template sequences that demonstrated the highest identity to the 1D2 sequence. Two VH sequences were identified that demonstrated a similarity score of 70% or higher and that displayed similar CDR lengths, preferably identical to those in 1D2 CDR1, CDR2, CDR3, respectively. The frameworks encoded by GenBank (Benson, D.A. et al., 2013, Nucleic Acids Res. 41(Dl):D36-42) accession # CAD60357.1, and AKU38567.1 were selected as templates for grafting of the 1D2 CDRs, resulting in the following cDNA constructs: SEQ ID NO: 28 and 32, respectively. Framework and CDR definition were those as determined by Kabat et al. ("Sequences of Proteins of Immunological Interest", Kabat, E., et al., US Department of Health and Human Services, (1983)). To understand the effect of humanized framework residues on the structure of the VHH, a homology model of 1D2 VHH was made WO 2022/180271 PCT/EP2022/054993 using the 'Antibody Prediction'-tool (default parameters) within BioLuminate 4.2.156 (Schrodinger). The homology model was built on basis of PDB ID 6GKU.
The CDRs were grafted in silico to study the effect of the human residues for features as loop conformation of the CDRs, the hydrophobicity of the surface, and structural integrity (e.g. increased rigidity). The resulting constructs were checked for these features, resulting in the design of additional constructs: SEQ ID NO: 25, 26, 27, 29, 30, 33 and 34. The sequences of these humanized 1D2- VHHs were then re-formatted to bispecific VHH with a V62 specific VHH (5C8varl; SEQ ID NO: 17, wherein X4 is Y) in the orientation: N-term-humanized-anti-lD2 VHH- linker-anti-V62 VHH-C-tag. The cDNAs encoding these molecules were then synthesized and cloned into an expression vector for the expression in HEK293E cells. Protein was made by transient transfection of the cells and was purified from the culture supernatant using C-tag affinity chromatography, followed by preparative size exclusion chromatography.
Example 9: Affinity determination of humanized lD2-5C8varl(Y105F) variants for binding CD123 using biolayer interferometry (BLI) To determine the kinetics of binding of humanized lD2-5C8varl variants to CD123, recombinant purified CD123-Fc fusion protein (Bio-Techne/R81D Systems) was loaded to a density of Inm onto anti-human IgG Fc Capture sensors (using a concentration of 5pg/ml) for an Octet Red96e (Sartorius) instrument. Different sensors were then dipped in different concentrations of humanized lD2-5C8varl variants, starting at 50 nM and two-fold dilutions thereof; dilutions were made in lOx kinetic buffer (lOxKB) provided by the supplier. From the obtained sensorgrams, the kinetic association- and dissociation rate constants were determined by curve fitting. The association- and dissociation rate constants, when fitting was possible, were used to calculate the affinity of the humanized 1D2- 5C8varl variants for binding to CD123. Measurements were performed twice and the affinity of the different humanized lD2-5C8varl variants for CD123 ranged WO 2022/180271 PCT/EP2022/054993 from 2.6 nM, similar compared to parental 1D2, to non-binding variants as shown in Table 2. For reference, the non-humanized (parental) 1D2 was included in these experiments.
Table 2: affinity of humanized variants of 1D2 to recombinant CD123 SEQ ID No: KD (nM) SD 3.1 0.77.2 0.424.5*14.9 4.320.0 7.57.7 1.529.1*n.b.44.1*2.6 0.510.4 7.5 *low binding (>20 nM), one measurement only, n.b.: no binding observed Example 10: Half-life extended (Fc containing) bispecific constructs The lD2-5C8varl bispecific VHH was re-formatted into a therapeutic antibody format containing a human Fc domain. Both VHH domains were coupled to a human IgGl Fc (i.e. CH2 and CH3) domain with the following characteristics: the VHH was coupled to a modified hinge (AAA, followed by SDKTHTCPPCP) and human CH2 and CH3 domains. The CH2 domain was Fc-silenced by the LFLE mutational pair (L234F, L235E) and the CH3 domains were mutated with the ‘knobs-into-holes‘ mutations (knob: T366W and hole: T366S, L368A and Y407V) that enforce hetero- dimerization, upon co-expression of the two chains in the same cell. This mutational pair has been described in the scientific literature (Ridgway et al. (1996) Protein Eng 9:617). The C-terminus of the anti-Vy9V62 heavy chain was equipped with a C-terminal tag for purification purposes (AAAEPEA (SEQ ID NO:53)). The sequences of the constructs are set forth in SEQ ID NO:49 and SEQ ID NO:50. The resulting antibody construct was termed lD2-5C8varl(Y105F)-Fc.
WO 2022/180271 PCT/EP2022/054993 Protein was made via co-transfection of the encoding two expression vectors in HEK293E cells and purification from the culture supernatant by means of C-tag affinity chromatography, followed by preparative size exclusion chromatography.
This yielded a highly monomeric protein preparation of lD2-5C8varl(Y105F)-Fc: Figure 9.
Example 11: lD2-5C8varl(Y105F)-Fc induces target-dependent T cell activation and causes T cell-mediated target cell cytotoxicity with an equal potency as that of the bispecific VHH lD2-5C8varl(Y105F)-Fc was then tested for its capacity to induce target- dependent Vy9V62 T cell activation in a co-culture of Vy9V62 T cells and THP- tumor cells (in a 1:1 ratio). Vy9V62 T cells were expanded from the blood of a healthy donor using procedures known in the art. The THP-1 cell line (ATCC cat. Nr.
TIB-202) was cultured as recommended by the supplier. In a 4 hours co-culture of both cell types, the activation of the Vy9V62 T cells was measured by staining for CD107a and measuring the percentage of CD107a positive cells by flow cytometry.
Figure 10 shows that lD2-5C8varl(Y105F)-Fc induced target-dependent T cell activation (no activation was observed in a co-culture of Vy9V62 T cells and tumor cells in the absence of compound; data not shown). The EC50 was typically in the pM range, ranging from 4 to 16pM (dependent on the donor used).
Remarkably, the potency of the Fc-containing molecule in inducing Vy9V62 T cell activation was not measurably different from that of the bispecific VHH. This was observed for three different independent T cell donors. To determine whether this T cell activation also resulted in target cell lysis, the viability of the THP-1 target cells was measured after 24 hours of co-culture (1:1 ratio) with Vy9V62 T cells in the presence of antibody. Vy9V62 T cells were isolated from the blood of healthy donors and expanded using standardized protocols. The day before the assay, the THP-1 target cell line was labeled with cell trace violet (CTV) to be able to distinguish it from the effector cell population in flow cytometry. After 24 hours of WO 2022/180271 PCT/EP2022/054993 co-culture in the presence of increasing concentrations of compound, the percentage of living target cells was determined: Figure 11.
Figure 11 shows that the bispecific VHH and Fc-containing counterpart both induced strong T-cell mediated target cell cytotoxicity and that the potency of both molecules in causing target cell lysis was not measurably different. EC50 values ranged between 1 and 3pM, dependent on the donor used. No target cell lysis was observed in the co-culture in the absence of compound (data not shown). After hours, all target cells in the assay were killed.
Example 12: lD2-5C8varl(Y105F)-Fc causes preferential kill of tumor cells over target-positive normal cells To determine to what extent the antibody induced killing of CD123-positive normal cells, plasmacytoid dendritic cells (pDCs) that are known to express CD123 (Collin et al., 2013 Immunology 140, 1:22-30) were enriched from the peripheral blood mononuclear cell (PBMC) fraction isolated from the blood from two healthy donors using MACS sorting (Miltenyi Biotech, Cat. Nr. 130-097-415). The THP-1 cell line was used as tumor cell line expressing CD123. Using staining for CD123 and analysis by flow cytometry, it was shown that the expression level of CD123 was approximately ten-fold higher on pDCs than on the THP-1 cell line: Figure 12.
The cytotoxic effects of the CD123 targeting compound in combination with Vy9V62 T cells on a mix of target cells were then determined in a co-culture of the THP-1 cell line, pDCs and Vy9V62 T cells in the ratio 1:1:2. Vy9V62 T cells were isolated from the blood of healthy donors and expanded using standardized protocols. The day before the assay, the THP-1 target cell line was labeled with cell trace violet (CTV) to be able to distinguish it from the effector cell population and other target cells in flow cytometry. After 24 hours of co-culture in the presence of increasing concentrations of compound, the percentage of living target cells was determined by staining for Vy9 (T cells), CD303 (pDC), CTV (THP-1) and CD1 (THP-1 and pDC) and analysed by flow cytometry.
WO 2022/180271 PCT/EP2022/054993 Figure 13 shows that the bispecific antibody induced the expected THP-1 target cell lysis (Figure 11) with a potency (EC50) that was around IpM. Remarkably however, despite the ten-fold higher expression level of the CD123 target molecule on pDCs (Figure 12), these cells were far less affected. The maximal lysis observed was lower and the EC50 found in the assay was almost 10-fold higher than that found for THP-1 cell lysis. Results for donor nr. 2 were similar (EC50 values of and llpM for THP-1 and pDCs respectively; data not shown). These data show a preferential induction of lysis of tumor cells over target-positive normal cells by the compound and Vy9V62 T cells.
Example 13: Epitope mapping reveals the 1D2 VHH to bind to a membrane- proximal epitope To determine what epitope on CD123 was recognized by the anti-CD123 VHH 1D2, this epitope was mapped using a mass-spectrometry based method (Pimenova et al., 2008 J Mass Spectrom. 43(2): 185-95). A number of residues in the CD1 molecule were found cross-linked to the antibody: Figure 14.
Figure 14 identifies the epitope of 1D2 to be present in the region of amino acid 203-273 of human CD123. When these residues are highlighted in the crystal structure of the molecule (PDB ID 5UV8: Broughton et al., 2018 Nat Commun. 9: 386), this maps to the second domain that is most membrane proximal and covers a surface area of 1011 A2.
Figure 15 shows that the epitope recognized by the lead anti-CD123 antibody is located close to the membrane. The distance spanned is about 40 A, which is not uncommon for an epitope. All CDR regions of the 1D2 VHH were found cross-linked to the antigen, with a particularly strong signal for the CDR3.
A similar experiment was performed to determine what epitope on CD123 was recognized by the anti-CD123 VHH 1A3. Residues H225, H231, R234, T251, R2 and T267 of CD123 were found to be cross-linked to the 1A3 antibody.
WO 2022/180271 PCT/EP2022/054993 Example 14: lD2x5C8varl(Y105F)-Fc shows a favorable stability profile The thermal stability of lD2x5C8varl(Y105F)-Fc was analyzed by nano-differential scanning fluorimetry (nano-DSF). The protein showed a high thermal stability with unfolding temperatures >60°C (Table 3). Additionally, lD2x5C8varl(Y105F)-Fc was subjected to accelerated stress tests. The sample was incubated for 1 week at elevated temperature (40°C) and under acidic (50mM acetate buffer, pH 5.0) and basic (100mM phosphate buffer, pH 8.5) conditions, as well as 6 and 24 hours under oxidative conditions (phosphate buffer, pH 7.4 and 0.05% H2O2). Any stress- induced changes were analyzed by measuring aggregates and fragments by (A) size exclusion chromatography detected by ultraviolet absorption (SEC-UV) and (B) capillary gel electrophoresis under denaturing (SDS) conditions (CE-SDS) and after reduction (Figure 16). No detectable degradation of the stressed protein sample in comparison to the non-stressed reference samples could be observed; the protein was found to be very stable.
Table 3: Results nanoDSF lD2x5C8varl(Y105F)-Fc Unfolding transition observed at 3nm/Tm ON [°C]Average 60.45Standard deviation 1.71 IP #1 [°C]Average 65.65Standard deviation 0.01 IP #2 [°C]Average 71.61Standard deviation 0.09 Turbidity onset TonAverage 67.75Standard deviation 2.13 Example 15: V32-CD123 bispecific antibody lD2x5C8varl(Y105F) is more potent than a 7A5 based Vy9-CD123 bispecific antibody in inducing T cell activation and T-cell mediated tumor cell cytotoxicity The potency of V62-CD123 bispecific antibody lD2x5C8varl(Y105F)-Fc was compared to a Vy9-CD123-Fc bispecific antibody based on Vy9-binding Fab antibody 7A5. The sequence of 7A5 was kindly provided by Prof. Kabelitz. The antibody has been characterized in Oberg et al. (2014) Cancer Res 74(5):1349.
Claims (22)
1. A multispecific antibody comprising a first antigen-binding region capable of binding human CD123 and a second antigen-binding region capable of binding the V82 chain of a human V/9V82 T cell receptor.
2. The multispecific antibody according to claim 1, wherein the multispecific antibody is a bispecific antibody.
3. The multispecific antibody according to any one of the preceding claims, wherein the first antigen-binding region is a single-domain antibody and/or the second antigen-binding region is a single-domain antibody.
4. The multispecific antibody according to any one of the preceding claims, wherein the multispecific antibody competes for binding to human CD1 with an antibody having the sequence set forth in SEQ ID NO:1, preferably wherein the multispecific antibody binds the same epitope on human CD1 as an antibody having the sequence set forth in SEQ ID NO:1.
5. The multispecific antibody according to any one of the preceding claims, wherein the first antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO:2, the VH CDR2 sequence set forth in SEQ ID NO: and the VH CDR3 sequence set forth in SEQ ID NO:4, wherein preferably the first antigen-binding region comprises or consists of: a sequence selected from the group of sequences set forth in SEQ ID NO:1, 25 to 34, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to a sequence selected from the group of sequences set forth in SEQ ID NO:1, 25 to 34. WO 2022/180271 PCT/EP2022/054993
6. The multispecific antibody according to any one of claims 1 to 3, wherein the multispecific antibody competes for binding to human CD123 with an antibody having the sequence set forth in SEQ ID NO:9, preferably wherein the multispecific antibody binds the same epitope on human CD123 as an antibody having the sequence set forth in SEQ ID NO:9.
7. The multispecific antibody according to claim 6, wherein the first antigen- binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 10, the VH CDR2 sequence set forth in SEQ ID NO: 11 and the VH CDR sequence set forth in SEQ ID NO: 12, wherein preferably the first antigen- binding region comprises or consists of: the sequence set forth in SEQ ID NO:9, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:9.
8. The multispecific antibody according to any one of the preceding claims, wherein the multispecific antibody is able to activate human V/9V82 T cells.
9. The multispecific antibody according to any one of the preceding claims, wherein the multispecific antibody competes for binding to human V82 with an antibody having the sequence set forth in SEQ ID NO: 17 wherein X4 is Y, preferably wherein the multispecific antibody binds the same epitope on human V82 as an antibody having the sequence set forth in SEQ ID NO: wherein X4 is Y, or wherein the multispecific antibody competes for binding to human V82 with an antibody having the sequence set forth in SEQ ID NO:36, preferably wherein the multispecific antibody binds the same epitope on human V82 as an antibody having the sequence set forth in SEQ ID NO:36, WO 2022/180271 PCT/EP2022/054993 or wherein the multispecific antibody competes for binding to human V82 with an antibody having the sequence set forth in SEQ ID NO:37, preferably wherein the multispecific antibody binds the same epitope on human V82 as an antibody having the sequence set forth in SEQ ID NO:37, or wherein the multispecific antibody competes for binding to human V82 with an antibody having the sequence set forth in SEQ ID NO:38, preferably wherein the multispecific antibody binds the same epitope on human V82 as an antibody having the sequence set forth in SEQ ID NO:38.
10. The multispecific antibody according to any one of the preceding claims, wherein the second antigen-binding region comprises the VH CDR sequence set forth in SEQ ID NO: 18, the VH CDR2 sequence set forth in SEQ ID NO: 19 and the VH CDR3 sequence set forth in SEQ ID NO:20, wherein preferably the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO: 17, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO: 17, or wherein the second antigen-binding region comprises the VH CDR sequence set forth in SEQ ID NO:39, the VH CDR2 sequence set forth in SEQ ID NO:40 and the VH CDR3 sequence set forth in SEQ ID NO:41, wherein preferably the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:36, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:36, or wherein the second antigen-binding region comprises the VH CDR1 WO 2022/180271 PCT/EP2022/054993 sequence set forth in SEQ ID NO:42, the VH CDR2 sequence set forth in SEQ ID NO:43 and the VH CDR3 sequence set forth in SEQ ID NO:44, wherein preferably the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:37, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:37, or wherein the second antigen-binding region comprises the VH CDR sequence set forth in SEQ ID NO:45, the VH CDR2 sequence set forth in SEQ ID NO:46 and the VH CDR3 sequence set forth in SEQ ID NO:47, wherein preferably the second antigen-binding region comprises or consists of the sequence set forth in SEQ ID NO:38, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set forth in SEQ ID NO:38.
11. The multispecific antibody according to any one of the preceding claims, wherein (i) the first antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO:2, the VH CDR2 sequence set forth in SEQ ID NO:3 and the VH CDR3 sequence set forth in SEQ ID NO:4 and the second antigen- binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 18, the VH CDR2 sequence set forth in SEQ ID NO: 19 and the VH CDR sequence set forth in SEQ ID NO:20, or (ii) the first antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 10, the VH CDR2 sequence set forth in SEQ ID NO: and the VH CDR3 sequence set forth in SEQ ID NO: 12 and the second antigen-binding region comprises the VH CDR1 sequence set forth in SEQ ID NO: 18, the VH CDR2 sequence set forth in SEQ ID NO: 19 and the VH CDR3 sequence set forth in SEQ ID NO:20. WO 2022/180271 PCT/EP2022/054993
12. The multispecific antibody according to any one of the preceding claims, wherein the first antigen-binding region capable of binding human CD123 is located N-terminally of the second antigen-binding region capable of binding the human V82 chain.
13. The multispecific antibody according to any one of the preceding claims, wherein the multispecific antibody further comprises a half-life extension domain, such as an Fc region, preferably a human Fc region.
14. The multispecific antibody according claim 13, wherein the Fc region is a heterodimer comprising two Fc polypeptides, wherein the first antigen- binding region is fused to the first Fc polypeptide and the second antigen- binding region is fused to the second Fc polypeptide and wherein the first and second Fc polypeptides comprise asymmetric amino acid mutations that favor the formation of heterodimers over the formation of homodimers, wherein preferably the first Fc polypeptide comprises a T366W substitution and the second Fc polypeptide comprises T366S, L368A and Y407V substitutions, or vice versa, wherein the amino acid positions correspond to human IgGl according to the EU numbering system.
15. The multispecific antibody according any one of claims 13 or 14, wherein the cysteine residues at position 220 in the first and second Fc polypeptides have been deleted or substituted, wherein the amino acid position corresponds to human IgGl according to the EU numbering system.
16. The multispecific antibody according any one of claims 13 to 15, wherein the first and second Fc polypeptides further comprise a mutation at position 234 and/or 235, preferably wherein the first and second Fc polypeptide WO 2022/180271 PCT/EP2022/054993 comprise an L234F and an L235E substitution, wherein the amino acid positions correspond to human IgGl according to the EU numbering system.
17. The multispecific antibody according to any one of the claims 13 to 16, wherein the first Fc polypeptide comprises the sequence set forth in SEQ ID NO:21 and the second Fc polypeptide comprises the sequence set forth in SEQ ID NO:22, or vice versa.
18. The multispecific antibody according to any one of the preceding claims, wherein the multispecific antibody is capable of mediating killing of CD123- expressing cells, such as Clr-neo cells or THP-1 cells, by Vy9V62 T cells.
19. An antibody comprising a first antigen-binding region capable of binding human CD123, wherein the first antigen-binding region is a single-domain antibody comprising: (i) VH CDR1 sequence set forth in SEQ ID NO:2, the VH CDR2 sequence set forth in SEQ ID NO:3 and the VH CDR3 sequence set forth in SEQ ID NO:4, wherein preferably the first antigen-binding region comprises or consists of: a sequence selected from the group of sequences set forth in SEQ ID NO:1, 25 to 34, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to a sequence selected from the group of sequences set forth in SEQ ID NO:1, 25 to 34, or (ii) the VH CDR1 sequence set forth in SEQ ID NO: 10, the VH CDR sequence set forth in SEQ ID NO: 11 and the VH CDR3 sequence set forth in SEQ ID NO: 12, wherein preferably the first antigen-binding region comprises or consists of: the sequence set forth in SEQ ID NO:9, or a sequence having at least 90%, such as least 92%, e.g. at least 94%, such as at least 96%, e.g. at least 98% sequence identity to the sequence set WO 2022/180271 PCT/EP2022/054993 forth in SEQ ID NO:9.
20. A pharmaceutical composition comprising a multispecific antibody according to any one of the preceding claims or the antibody according to claim 5 and a pharmaceutically-acceptable excipient.
21. The multispecific antibody according to any one of claims 1 to 18 or the antibody according to claim 19 for use as a medicament, preferably for use in the treatment of cancer, more preferably for use in the treatment of acute 10 myeloid leukemia, B-cell acute lymphoblastic leukemia, hairy cell leukemia, Hodgkin lymphoma, blastic plasmacytoid dendritic neoplasm, chronic myeloid leukemia, chronic lymphocytic leukemia, B-cell chronic lymphoproliferative disorders or myelodysplastic syndrome. 15
22. A nucleic acid construct comprising a nucleotide sequence encoding an antibody of according to any one of claims 1 to 19 or a host cell comprising one or more nucleic acid constructs encoding an antibody according to any one of claims 1 to 19.
Applications Claiming Priority (5)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
EP21159698 | 2021-02-26 | ||
US202163166339P | 2021-03-26 | 2021-03-26 | |
US202163274709P | 2021-11-02 | 2021-11-02 | |
EP21011140 | 2021-11-29 | ||
PCT/EP2022/054993 WO2022180271A1 (en) | 2021-02-26 | 2022-02-28 | Antibodies that bind CD123 and gamma-delta T cell receptors |
Publications (1)
Publication Number | Publication Date |
---|---|
IL305346A true IL305346A (en) | 2023-10-01 |
Family
ID=88293344
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
IL305346A IL305346A (en) | 2021-02-26 | 2022-02-28 | Antibodies that bind cd123 and gamma-delta t cell receptors |
Country Status (1)
Country | Link |
---|---|
IL (1) | IL305346A (en) |
-
2022
- 2022-02-28 IL IL305346A patent/IL305346A/en unknown
Similar Documents
Publication | Publication Date | Title |
---|---|---|
TWI830761B (en) | Antibody constructs for cldn18.2 and cd3 | |
US11267897B2 (en) | Multispecific NK engager protein | |
JP6718488B2 (en) | Modulation of complement-dependent cytotoxicity by modification of the C-terminus of antibody heavy chains | |
JP2017536128A (en) | Domain exchange antibody | |
CA3000869A1 (en) | Antigen-binding polypeptide constructs comprising kappa and lambda light chains and uses thereof | |
TWI830151B (en) | TRISPECIFIC ANTIBODY AGAINST GPRC5DxBCMAxCD3 AND USE THEREOF | |
CA3164979A1 (en) | New polypeptide complex | |
WO2020073131A1 (en) | Antibody constructs binding 4-1bb and tumor-associated antigens and uses thereof | |
US20230303694A1 (en) | Antibodies that bind gamma-delta t cell receptors | |
WO2020053300A1 (en) | Improved anti-flt3 antigen binding proteins | |
US20240141071A1 (en) | Antibodies that bind cd123 and gamma-delta t cell receptors | |
EP3623383A1 (en) | Improved bispecific flt3xcd3 antigen binding proteins | |
WO2021207827A1 (en) | Antibody constructs binding 4-1bb and folate receptor alpha and uses thereof | |
IL305346A (en) | Antibodies that bind cd123 and gamma-delta t cell receptors | |
EP4292610A1 (en) | Variant antibodies that bind gamma-delta t cell receptors | |
CN117986371A (en) | Antibodies that bind CD123 and gamma-delta T cell receptors | |
EP4292609A1 (en) | Compositions comprising antibodies that bind gamma-delta t cell receptors | |
WO2022262828A1 (en) | Anti-il-36r antibody and use thereof | |
JP2023547662A (en) | Polypeptide constructs that selectively bind to CLDN6 and CD3 | |
TW202346337A (en) | Ilt3 and cd3 binding agents and methods of use thereof | |
JP2020141710A (en) | Modulation of complement-dependent cytotoxicity through modifications of c-terminus of antibody heavy chains |