IL299077B2 - מיקום אריחים ו/או בחירת סט משקל מבוסס מחזור עבור קריאת שם לבסיסים - Google Patents

מיקום אריחים ו/או בחירת סט משקל מבוסס מחזור עבור קריאת שם לבסיסים

Info

Publication number
IL299077B2
IL299077B2 IL299077A IL29907722A IL299077B2 IL 299077 B2 IL299077 B2 IL 299077B2 IL 299077 A IL299077 A IL 299077A IL 29907722 A IL29907722 A IL 29907722A IL 299077 B2 IL299077 B2 IL 299077B2
Authority
IL
Israel
Prior art keywords
weight set
sensor data
weights
neural network
sensing cycles
Prior art date
Application number
IL299077A
Other languages
English (en)
Other versions
IL299077A (he
IL299077B1 (he
Original Assignee
Illumina Inc
Illumina Software Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US17/687,551 external-priority patent/US20220301657A1/en
Application filed by Illumina Inc, Illumina Software Inc filed Critical Illumina Inc
Priority claimed from PCT/US2022/020460 external-priority patent/WO2022197752A1/en
Publication of IL299077A publication Critical patent/IL299077A/he
Publication of IL299077B1 publication Critical patent/IL299077B1/he
Publication of IL299077B2 publication Critical patent/IL299077B2/he

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/08—Learning methods
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/04—Architecture, e.g. interconnection topology
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/04—Architecture, e.g. interconnection topology
    • G06N3/045—Combinations of networks
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/04—Architecture, e.g. interconnection topology
    • G06N3/0464—Convolutional networks [CNN, ConvNet]
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/04—Architecture, e.g. interconnection topology
    • G06N3/048—Activation functions
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/04—Architecture, e.g. interconnection topology
    • G06N3/0495—Quantised networks; Sparse networks; Compressed networks
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/06—Physical realisation, i.e. hardware implementation of neural networks, neurons or parts of neurons
    • G06N3/063—Physical realisation, i.e. hardware implementation of neural networks, neurons or parts of neurons using electronic means
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/08—Learning methods
    • G06N3/084—Backpropagation, e.g. using gradient descent
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/08—Learning methods
    • G06N3/086—Learning methods using evolutionary algorithms, e.g. genetic algorithms or genetic programming
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Data Mining & Analysis (AREA)
  • Software Systems (AREA)
  • Evolutionary Computation (AREA)
  • Artificial Intelligence (AREA)
  • Biomedical Technology (AREA)
  • General Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Computing Systems (AREA)
  • General Engineering & Computer Science (AREA)
  • Computational Linguistics (AREA)
  • Mathematical Physics (AREA)
  • Medical Informatics (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Biotechnology (AREA)
  • Epidemiology (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Public Health (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Neurology (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Physiology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Compression, Expansion, Code Conversion, And Decoders (AREA)
  • Pens And Brushes (AREA)
  • Road Signs Or Road Markings (AREA)
  • Road Paving Structures (AREA)
  • Image Analysis (AREA)
IL299077A 2021-03-16 2022-03-15 מיקום אריחים ו/או בחירת סט משקל מבוסס מחזור עבור קריאת שם לבסיסים IL299077B2 (he)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US202163161896P 2021-03-16 2021-03-16
US202163161880P 2021-03-16 2021-03-16
US17/687,551 US20220301657A1 (en) 2021-03-16 2022-03-04 Tile location and/or cycle based weight set selection for base calling
US17/687,583 US12525320B2 (en) 2021-03-16 2022-03-04 Neural network parameter quantization for base calling
PCT/US2022/020460 WO2022197752A1 (en) 2021-03-16 2022-03-15 Tile location and/or cycle based weight set selection for base calling

Publications (3)

Publication Number Publication Date
IL299077A IL299077A (he) 2023-02-01
IL299077B1 IL299077B1 (he) 2025-07-01
IL299077B2 true IL299077B2 (he) 2025-11-01

Family

ID=85057463

Family Applications (1)

Application Number Title Priority Date Filing Date
IL299077A IL299077B2 (he) 2021-03-16 2022-03-15 מיקום אריחים ו/או בחירת סט משקל מבוסס מחזור עבור קריאת שם לבסיסים

Country Status (7)

Country Link
EP (2) EP4309080A1 (he)
JP (2) JP7726929B2 (he)
KR (1) KR20230157230A (he)
CN (2) CN115699019A (he)
AU (2) AU2022237501A1 (he)
CA (2) CA3183567A1 (he)
IL (1) IL299077B2 (he)

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
NL2018852B1 (en) 2017-05-05 2018-11-14 Illumina Inc Optical distortion correction for imaged samples
GB201819378D0 (en) * 2018-11-28 2019-01-09 Oxford Nanopore Tech Ltd Analysis of nanopore signal using a machine-learning technique
US11783917B2 (en) 2019-03-21 2023-10-10 Illumina, Inc. Artificial intelligence-based base calling
US11210554B2 (en) * 2019-03-21 2021-12-28 Illumina, Inc. Artificial intelligence-based generation of sequencing metadata
CA3104851A1 (en) 2019-05-16 2020-11-19 Illumina, Inc. Base calling using convolutions

Also Published As

Publication number Publication date
IL299077A (he) 2023-02-01
JP2024510539A (ja) 2024-03-08
IL299077B1 (he) 2025-07-01
KR20230157230A (ko) 2023-11-16
EP4309179A1 (en) 2024-01-24
AU2022238841A1 (en) 2023-02-02
CN115803815A (zh) 2023-03-14
AU2022237501A1 (en) 2023-02-02
CN115699019A (zh) 2023-02-03
JP7726929B2 (ja) 2025-08-20
CA3183581A1 (en) 2022-09-22
EP4309080A1 (en) 2024-01-24
CA3183567A1 (en) 2022-09-22
JP2025179067A (ja) 2025-12-09

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