IL267646A - Methods, devices and systems for analyzing strains of microorganisms in complex heterogeneous communities, determining their functional interrelationships and interactions and means of diagnosis and management of the biological condition based on them - Google Patents
Methods, devices and systems for analyzing strains of microorganisms in complex heterogeneous communities, determining their functional interrelationships and interactions and means of diagnosis and management of the biological condition based on themInfo
- Publication number
- IL267646A IL267646A IL267646A IL26764619A IL267646A IL 267646 A IL267646 A IL 267646A IL 267646 A IL267646 A IL 267646A IL 26764619 A IL26764619 A IL 26764619A IL 267646 A IL267646 A IL 267646A
- Authority
- IL
- Israel
- Prior art keywords
- biostate
- diagnostics
- interactions
- apparatuses
- systems
- Prior art date
Links
Classifications
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/569—Immunoassay; Biospecific binding assay; Materials therefor for microorganisms, e.g. protozoa, bacteria, viruses
- G01N33/56911—Bacteria
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
- C12Q1/04—Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
- C12Q1/06—Quantitative determination
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
- G16B5/20—Probabilistic models
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B10/00—ICT specially adapted for evolutionary bioinformatics, e.g. phylogenetic tree construction or analysis
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/20—Sequence assembly
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Chemical & Material Sciences (AREA)
- Molecular Biology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Immunology (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Urology & Nephrology (AREA)
- Analytical Chemistry (AREA)
- Hematology (AREA)
- Biomedical Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Theoretical Computer Science (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Biochemistry (AREA)
- Medical Informatics (AREA)
- Evolutionary Biology (AREA)
- Microbiology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Physiology (AREA)
- Zoology (AREA)
- Cell Biology (AREA)
- Medicinal Chemistry (AREA)
- Virology (AREA)
- General Physics & Mathematics (AREA)
- Pathology (AREA)
- Probability & Statistics with Applications (AREA)
- Food Science & Technology (AREA)
- Genetics & Genomics (AREA)
- Wood Science & Technology (AREA)
- Tropical Medicine & Parasitology (AREA)
- General Engineering & Computer Science (AREA)
- Toxicology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201662439804P | 2016-12-28 | 2016-12-28 | |
US201762560174P | 2017-09-18 | 2017-09-18 | |
PCT/US2017/068753 WO2018126033A1 (en) | 2016-12-28 | 2017-12-28 | Methods, apparatuses, and systems for analyzing microorganism strains in complex heterogeneous communities, determining functional relationships and interactions thereof, and diagnostics and biostate management based thereon |
Publications (1)
Publication Number | Publication Date |
---|---|
IL267646A true IL267646A (en) | 2019-08-29 |
Family
ID=62710026
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
IL267646A IL267646A (en) | 2016-12-28 | 2019-06-25 | Methods, devices and systems for analyzing strains of microorganisms in complex heterogeneous communities, determining their functional interrelationships and interactions and means of diagnosis and management of the biological condition based on them |
Country Status (8)
Country | Link |
---|---|
EP (1) | EP3562956A4 (es) |
JP (1) | JP2020507308A (es) |
CN (1) | CN110392738A (es) |
AU (1) | AU2017388532A1 (es) |
CA (1) | CA3048247A1 (es) |
IL (1) | IL267646A (es) |
MX (1) | MX2019007764A (es) |
WO (1) | WO2018126033A1 (es) |
Families Citing this family (16)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
DK3314007T3 (da) | 2015-06-25 | 2024-04-22 | Native Microbials Inc | Fremgangsmåder, apparater og systemer til analyse af mikroorganismestammer fra komplekse heterogene miljøer til forudsigelse og identificering af funktionelle forbindelser og interaktioner derimellem og udvælgelse og syntese af mikrobielle ensembler baseret derpå |
US10851399B2 (en) | 2015-06-25 | 2020-12-01 | Native Microbials, Inc. | Methods, apparatuses, and systems for microorganism strain analysis of complex heterogeneous communities, predicting and identifying functional relationships and interactions thereof, and selecting and synthesizing microbial ensembles based thereon |
US9938558B2 (en) | 2015-06-25 | 2018-04-10 | Ascus Biosciences, Inc. | Methods, apparatuses, and systems for analyzing microorganism strains from complex heterogeneous communities, predicting and identifying functional relationships and interactions thereof, and selecting and synthesizing microbial ensembles based thereon |
US9993507B2 (en) | 2016-01-07 | 2018-06-12 | Ascus Biosciences, Inc. | Methods of improving milk production and compositional characteristics |
EP3562954A1 (en) | 2016-12-28 | 2019-11-06 | Ascus Biosciences, Inc. | Methods, apparatuses, and systems for analyzing complete microorganism strains in complex heterogeneous communities, determining functional relationships and interactions thereof, and identifying and synthesizing bioreactive modificators based thereon |
WO2018201049A1 (en) | 2017-04-28 | 2018-11-01 | Ascus Biosciences, Inc. | Methods for supporting grain intensive and/or energy intensive diets in ruminants with a synthetic bioensemble of microbes |
IL264581A (en) * | 2019-01-31 | 2020-08-31 | Segal Eran | Predicting blood metabolites |
EP4172851A1 (en) * | 2020-06-24 | 2023-05-03 | Université de Lausanne | Means and methods for classifying microbes |
KR102241357B1 (ko) * | 2020-10-20 | 2021-04-16 | 주식회사 에이치이엠 | 머신러닝 모델을 이용하여 대장용종을 진단하는 방법 및 장치 |
CN112662795B (zh) * | 2021-01-26 | 2023-12-15 | 苏州系统医学研究所 | 用于感染性病原体检测的阳性对照品及其制备方法与应用 |
CN112951333A (zh) * | 2021-01-27 | 2021-06-11 | 天津大学 | 以f2噬菌体为模式病毒预测冠状病毒消抗模型评价方法 |
KR102304399B1 (ko) * | 2021-03-26 | 2021-09-24 | 주식회사 에이치이엠파마 | 머신러닝 모델을 이용하여 고혈당을 판별하는 방법 및 진단 장치 |
CN113096737B (zh) * | 2021-03-26 | 2023-10-31 | 北京源生康泰基因科技有限公司 | 一种用于对病原体类型进行自动分析的方法及系统 |
KR102304402B1 (ko) * | 2021-03-26 | 2021-09-24 | 주식회사 에이치이엠파마 | 머신러닝 모델을 이용하여 비만 여부를 판별하는 방법 및 진단 장치 |
KR20220158950A (ko) * | 2021-05-25 | 2022-12-02 | 주식회사 에이치이엠파마 | 머신러닝 모델을 이용하여 소화기 장애 유무를 판별하는 방법 및 진단 장치 |
KR20220158948A (ko) * | 2021-05-25 | 2022-12-02 | 주식회사 에이치이엠파마 | 머신러닝 모델을 이용하여 복부팽만 유무를 판별하는 방법 및 진단 장치 |
Family Cites Families (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
DK2370585T3 (en) * | 2008-12-02 | 2016-09-26 | Dupont Nutrition Biosci Aps | TRIBES AND PRACTICES TO IMPROVE ruminants HEALTH AND / OR -performance |
US20130121968A1 (en) * | 2011-10-03 | 2013-05-16 | Atossa Genetics, Inc. | Methods of combining metagenome and the metatranscriptome in multiplex profiles |
CN104171413B (zh) * | 2014-08-01 | 2016-04-13 | 农业部沼气科学研究所 | 一种含厌氧菌K.paraultunense KD-1发酵液和羽毛粉的肉型家禽饲料 |
CN104814278A (zh) * | 2015-04-15 | 2015-08-05 | 江苏师范大学 | 一种提高奶牛产奶量的微生态制剂 |
DK3314007T3 (da) * | 2015-06-25 | 2024-04-22 | Native Microbials Inc | Fremgangsmåder, apparater og systemer til analyse af mikroorganismestammer fra komplekse heterogene miljøer til forudsigelse og identificering af funktionelle forbindelser og interaktioner derimellem og udvælgelse og syntese af mikrobielle ensembler baseret derpå |
-
2017
- 2017-12-28 EP EP17887981.3A patent/EP3562956A4/en not_active Withdrawn
- 2017-12-28 WO PCT/US2017/068753 patent/WO2018126033A1/en unknown
- 2017-12-28 CA CA3048247A patent/CA3048247A1/en not_active Abandoned
- 2017-12-28 CN CN201780087481.6A patent/CN110392738A/zh active Pending
- 2017-12-28 MX MX2019007764A patent/MX2019007764A/es unknown
- 2017-12-28 AU AU2017388532A patent/AU2017388532A1/en not_active Abandoned
- 2017-12-28 JP JP2019535790A patent/JP2020507308A/ja active Pending
-
2019
- 2019-06-25 IL IL267646A patent/IL267646A/en unknown
Also Published As
Publication number | Publication date |
---|---|
MX2019007764A (es) | 2019-10-15 |
AU2017388532A1 (en) | 2019-07-25 |
EP3562956A1 (en) | 2019-11-06 |
JP2020507308A (ja) | 2020-03-12 |
CN110392738A (zh) | 2019-10-29 |
EP3562956A4 (en) | 2020-10-14 |
WO2018126033A1 (en) | 2018-07-05 |
CA3048247A1 (en) | 2018-07-05 |
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