IL135430A - Use of a polynucleotide capable of expressing a cytotoxic gene product in the production of a pharmaceutical composition for treating tumors - Google Patents

Description

Ο>>Η>>3 i o >ηριι w n mana o» r v n *i¾nn Use of a polynucleotide capable of expressing a cytotoxic gene product in the production of a pharmaceutical composition for treating tumors Yissum Research Development Company flO'VWHNfl b\y ipnofi rmvab ma oiiy» of the Hebrew University of Jerusalem o>iwva J iayn C.124352 135430/2 1. Field of the Invention The invention is in the field of tumor cell biology and cancer treatment. More, specifically, the invention relates to the specific expression of heterologous genes, particularly genes encoding cytotoxic products, in tumor cells. 2. Background of the Invention 2.1 The H19 Gene The HI 9 gene is one of the few genes known to be imprinted in humans (Hurst et ai ,. 1996, Nature Genetics 12:234-237). . At the very beginning of embryogenesis, HI 9 is expressed from both chromosomal alleles (DeGroot et ai, 1994, Trophoblast 8:285-302). Shortly afterwards, silencing of the paternal allele occurs, and only the maternally inherited allele is transcribed.

H19 is abundantly expressed during embryogenesis, and was first identified as a gene that was coordinately regulated with aipha-fetoprotein in liver by the fnznj-acting locus raf (Pachnis et ai, 1984, Proc. Natl. Acad. Sci. USA 81 :5523-5527). Additionally, H19 has been independently cloned by a number of groups using screens aimed at isolating genes expressed during tissue differentiation. For example, Davis et al. ( 1987, Cell 51 :987-1000) identified the mouse homolog of H19 in a screen for genes active early during differentiation of C3H10T1/2 cells. Pourier et al. (1991, Development 1 13:1 105-1 1 14) found that murine HI 9 was expressed during stem cell differentiation and at the time of implantation. Transcription of the human HI 9 gene was also discovered in differentiating cytotrophoblasts from human placenta (Rachmilewitz et al, 1992, Molec. Reprod. Dev. 32:196-202).

While transcription of HI 9 RNA occurs in a number of different embryonic tissues throughout fetal life and placental development, HI 9 expression is down-regulated postnatally. Relatively low levels of HI 9 transcription have been reported, however, in murine adult muscle and liver (Brunkow and Tilghman, 1991, Genes & Dev. 5: 1092-1101). HI 9 also is activated postnatally in cancer cells. Ariel et al. (1997, Molec. Pathol. 50:34-^44) demonstrated HI 9 expression in a number of tumors arising from the tissues in which it is expressed prenatally. Additionally, these authors found HI 9 RNA in tumors derived from neural tissues, in particular astrocytoma and ganglioneuroblastoma, that are not known to be associated with H19 expression. Given the large array of cancers expressing HI 9 RNA, these authors speculated that HI 9 was an oncofetal RNA and proposed investigating HI 9 as a tumor marker for human neoplasia.

Both human and murine HI 9 genes have been cloned and sequenced (Brannan et al, 1990, Molec. Cell. Biol. 10:28-36). Comparison of the human and mouse H19 genes revealed an overall 77% nucleotide sequence identity. Despite this conservation of nucleotide homology between species, very low deduced amino acid sequence identity could be predicted from the open reading frames of the two genes (Id). Further, although HI 9 RNA is transcribed by RNA polymerase II, spliced and polyadenylated, it does not appear to be translated. Instead, HI 9 RNA has been found associated with the 28S cytoplasmic RNA, leading to speculation that HI 9 RNA may function as an RNA component of a ribonucleoprotein (Id).

SUBSTITUTE SHEET (RULE 28) The actual physiological role of H19 is not fully understood. H19 can act as a dominant lethal gene; a high ectopic expression of an HI 9 transgene causes lethality in mice shortly before birth (Brunkow et al, supra). This lethal period coincides with the time when H19 transcription becomes repressed. On the other hand, no defect has been observed in either heterozygous or homozygous mice carrying an HI 9 knockout allele(s) (Leighton et al, 1995, Nature 375:34-39). A knockout of the maternally inherited allele does interfere with imprinting of the genetically linked and oppositely imprinted IGF-2 gene; the resulting mice are larger at birth than their littermates due to the increased prenatal expression of IGF-2 (Id.). Since these two oppositely imprinted genes share cw-acting regulatory sequences, Leighton and colleagues speculated that HI 9 may be involved in imprinting the IGF-2 gene.

Another function proposed for the HI 9 gene product is that of a tumor suppressor RNA. Hao et al. (1993, Nature 365:764-767) reported that transfection of two embryonal tumor cell lines, RD and G401, with an HI 9 expression construct resulted in cell growth retardation, morphological changes and reduced tumorigenicity in nude mice. Such a tumor suppressor activity has been noted as consistent with the observed lethality of ectopic expression in mice (Hao et al, supra) as well as the increased size of mice that are knocked out for the maternal HI 9 allele (Leighton et al, supra). The proposal that HI 9 is a tumor suppressor has been controversial, however. Some of the results were reportedly not reproduced, and there may exist another candidate tumor suppressor gene closely linked to HI 9 (Ariel et al, supra). H19's proposed role as a tumor suppressor also conflicts with the experimental data that H19 is activated in a broad array of tumor cells (see for example Lustig-Yariv et al, 1997, Oncogene 23:169-177). 2.2 The Insulin-Like Growth Factor (IGF) Genes IGF-2 is another imprinted gene whose expression depends upon it's parental origin. However in contrast to HI 9. IGF-2 in both mice and humans is maternally imprinted and therefore expressed from the paternally inherited allele (Rainier et ai, 1993, Nature 363:747-749). The human IGF-2 gene exhibits a complex transcriptional pattern. There are four IGF-2 promoters that are activated in a tissue and developmentally specific manner. Only three of the promoters, P2, P3 and P4 are imprinted and active during fetal development and in cancer tissues. The fourth, promoter PI, is not imprinted and is activated only in adult liver and choroid plexus (see Holthuizen et ai, 1993, Mol. Reprod. Dev. 35:391-393). The P3 promoter of the IGF-2 gene has been implicated in the progression of liver cirrhosis and hepatocellular carcinoma (Kim and Park, 1998, J. Korean Med. Sci. 13:171-178).

Loss of imprinting of IGF-2 has been implicated in Wilm's tumor (Ogawa et ai, 1993, Nature 363:749-751). This observation led many investigators to speculate that the loss of imprinting and biallelic expression of imprinted genes may be involved in growth disorders and the development of cancer (see also Rainier et ai, 1993, Nature 362:747-749. and Glassman et ai, 1996, Cancer Genet. Cytogenet. 89:69-73). 2.3 Tumor-Specific Gene Therapy Regulatory sequences from tumor-associated genes have been used to selectively target expression of a suicide gene in tumor-derived cells. For example, alpha-fetoprotein expression is induced in hepatocellular carcinoma. Huber et ai (1991, Proc. Natl. Acad. Sc. USA 88:8039-8043) used control sequences from either the albumin gene or the alpha-fetoprotein gene to target expression of varicella-zoster thymidine kinase (VZV TK) gene coding sequences to hepatoma cells. Hepatoma cells infected in vitro with a retroviral vector containing one of these expression constructs expressed VZV TK and SUBSTITUTE SHEET (RULE 2S) - 5 - 135430/2 became sensitive to the normally non-toxic prodrug 6-methoxypurine arabinonucleoside (araM). Kaneko et al. (1995, Cancer Res. 55:5283-5287) constructed an adenoviral vector expressing HSV TK under the control of the alpha- fetoprotein control sequences. Recombinant adenoviral particles containing this vector were directly injected into hepatocellular carcinoma derived tumors generated in athymic nude mice. Subsequent intraperitoneal injections with ganciclovir caused regression of the hepatocellular carcinoma-derived tumors.

Osaka et al. (1994, Cancer Res. 54:5258-5261) transfected into A549 lung carcinoma cells an expression construct containing the control sequences for the lung carcinoembryonic antigen gene linked to the coding sequence for Herpes simplex virus thymidine kinase (HSV TK). The transfected cells were sensitive to ganciclovir. Additionally, tumor growth in nude mice from subcutaneously injected transfected cells was inhibited by repeated intraperitoneal injections of ganciclovir. However, the carcinoembryonic antigen gene has recently been described as expressed in normal colonic mucosa, thus limiting the usefulness of these control sequences as tumor specific regulatory regions (Osaka et al, supra). Thus, there remains a need for the development of gene therapy vectors that specifically express gene products in tumor cells. 3. Summary of the Invention The invention relates to the use of a polynucleotide comprising a heterologous sequence encoding a cytotoxic gene product operably linked to a regulatory sequence, wherein the regulatory sequence is derived from HI 9, IFG-1, or IGF-2 P4 promoter regulatory elements, in the preparation of a pharmaceutical composition for use in a method of expressing a heterologous sequence in a tumor cell. In particular, the invention relates to the use of a polynucleotide encoding a cytotoxic or cytostatic gene product operably linked to - 6 - 135430/2 a regulatory sequence, wherein the regulatory sequence is derived from HI 9, IGF-1, or IGF-2 P4 promoter regulatory elements, in the preparation of a pharmaceutical composition for use in a method of treating cancer in a subject. The regulatory sequences will direct gene expression in a number of different cancerous cell types. Such methods and compositions are useful in the treatment of a wide variety of cancers and hyperproliferative conditions, in particular, bladder cancer.

One aspect of the invention is a vector for expressing a sequence in a tumor cell, the vector comprising a polynucleotide comprising a regulatory sequence operably linked to a heterologous sequence encoding a cytotoxic gene product, wherein the regulatory sequence is derived from HI 9, IGF-1, or IGF-2 P4 promoter regulatory elements. Also encompassed by the invention are host cells containing such vectors. In that regard, an expression construct containing a heterologous gene controlled by H19 promoter with or without H19 enhancer may be co-introduced into a cell with a second construct containing a heterologous gene controlled by IGF-I promoter or IGF-2 P3 or P4 promoter in combination with the HI 9 enhancer.

Passages of the description which are not within the scope of the claims do not constitute part of the invention. 4. Brief Description of the Figures Figure 1A-1C. The nucleotide sequence of human H19 promoter region. The promoter region from nucleotide position -837 to -7 (relative to the start of transcription) is shown (SEQ ID NO:l).

Figure 2. Schematic diagram of the vectors used to express a heterologous gene under the control of H19 regulatory sequences.

Figure 3A-3E. HI 9 Regulatory Sequences Direct Expression Of A Heterologous Gene (CAT) in Bladder Cancer Cell Lines. For the five different indicated cell lines, CAT specific activity (cpm g protein) is plotted as a function of the vector used for transfection. Figure 3A: HT-1376 cells. Figure 3B: EJ28 cells. Figure 3C: T24P cells. Figure 3D: 1 197 cells. Figure 3E: UM-UC-3 cells. The vectors, as follows, are described more fully below in Section 6: (1) pCAT-basic; (2) pCAT-control; (3) pH19E; (4) pH19EH19D; and (5) pH19EH19R.

Figure 4A-4E. The IGF-2 P3 and P4 Promoters Direct Expression Of A Heterologous Gene (Luciferase) In Bladder Cancer Cell Lines. For the five different cell lines shown, luciferase specific activity (counts per ^g of protein) is plotted as a function of the IGF-2 promoter used in the transfected construct to direct expression of luciferase. Figure 4A: T24P cells. Figure 4B: 1376 cells. Figure 4C: UM-UC3 cells. Figure 4D: 1197 cells. Figure 4E: EJ28 cells. The vectors are described more fully below in Section 10.

Figure 5. Nucleotide sequence of a Human HI 9 promoter fragment (SEQ ID NO:2).

Figure 6. Nucleotide sequence of the 0.9 kb HI 9 enhancer fragment (SEQ ID NO:3).

Figure 7A and 7B. Nucleotide sequence of the 2 kb HI 9 enhancer fragment (SEQ ID NO:4).

Figure 8A-8C. Nucleotide sequence of the 4 kb HI 9 enhancer fragment (SEQ ID NO:5).

Figure 9A-9. Transfection with vectors containing various ΗΪ9 regulatory region and P4 promoter combinations directs luciferase expression in tumor cells. Figure 9 A: 5637 cells. Figure 9B: Huh7 cells. Figure 9C: 293T cells.

Figure 10A-10E. Transfection with vectors containing H19 regulatory regions direct luciferase expression in tumor cells. Figure 10A: 293T cells. - 8 - 135430/2 Figure 10B : T24P cells. Figure I OC : Huh7 cells . Figure 10D: 5637 cells. Figure 1 0E: RT1 12 cells.

. Detailed Description of the Invention The invention is based, in part, on the discovery that the regulatory regions from genomically imprinted genes that are expressed in cancer cells can be used to target the expression of coding sequences of interest in cancer cells. In particular, it has been found that H19 expression is activated in a wide array of carcinomas, including but not limited to bladder carcinoma, hepatocellular carcinoma, hepatoblastoma, rhabdomyosarcoma, ovarian carcinoma, cervical carcinoma, lung carcinoma, breast carcinoma, squamous cell carcinoma in head and .neck, esophageal carcinoma, thyroid carcinoma, astrocytoma, ganglioblastoma and neuroblastoma. Further, it has been discovered that constructs containing the H 19 promoter regions operatively linked to a heterologous gene, or the IGF-2 P3 or P4 promoter operatively linked to a heterologous gene, or constructs containing such a promoter in combination with a downstream HI 9 enhancer, are specifically activated in tumor cells. In another aspect of the invention, an IGF- 1 promoter is used to direct expression of the heterologous gene.

Accordingly, in one of its aspects, the invention provides compositions for altering the phenotype of, or selecting killing, cancerous cells. This object is accomplished by delivering to the cells a polynucleotide comprising the regulatory regions from genomically imprinted genes that are expressed in cancer cells operably linked to a heterologous gene. The heterologous gene can encode, for example, a cytostatic or a cytotoxic agent (e.g. a toxin, an antisense RNA or a ribozyme).

Regulatory regions from genomically imprinted genes that are expressed in cancer cells include but are not limited to the HI 9 promoter and enhancer, and the IGF-2 P3 and P4 promoter.

For purposes of the invention described herein, the term "operatively linked" means that a nucleotide sequence is linked to a regulatory sequence in a manner which allows expression of the nucleotide sequence to be directed by the regulator}' sequence.

A "heterologous" gene sequence refers, for purposes of the instant application, to a gene sequence that is not normally operatively linked to the regulatory sequences of the H19 gene. Generally, heterologous gene sequences include sequences that encode cytostatic and cytotoxic gene products.

As used herein, the term "expression" refers to the transcription of the DNA of interest, and the splicing, processing, stability, and, optionally, translation of the corresponding mRNA transcript. Depending on the structure of the. DNA molecule delivered, expression may be transient or continuous. .1 Regulatory Sequences of the H19 gene, the IGF-2 P3 amd P4 Promoters and IGF-1 Promoter Described herein are H19 regulatory sequences that can be used to direct the tumor cell specific expression of a heterologous coding sequence. These HI 9 regulatory sequences include the upstream HI 9 promoter region and/or the downstream H19 enhancer region. The nucleotide sequence of one HI 9 promoter region is shown in Figure 1A-1C (SEQ ID NO: 1). This 830 nucleotide sequence extends from -837 to -7 nucleotides from the cap site (as described in Brannan et al, supra). A consensus TATA sequence occurs at nucleotides -27 to -35. Two consensus AP2 binding sites (8/9 matches) occur at approximately -500 and -40 nucleotides upstream from the initiation of transcription. When placed upstream of the coding region for a heterologous gene, as discussed in more detail below, approximately 830 base pairs of the regulatory region is sufficient to direct expression of the operatively linked heterologous gene in cancer cells that also express endogenous HI 9. Additionally, another HI 9 promoter region between nucleotides -819 to +14 SOeSTSTUTE SHEET (RULE 2®) (Figure 5, SEQ ID NO:2) is also sufficient to direct expression of the operatively linked heterologous gene in cancer cells.

The downstream enhancer region of the human H19 gene can optionally be added to an HI 9 promoter/heterologous gene construct in order to provide enhanced levels of tumor cell-specific expression. As described more fully below and illustrated by way of example in Section 6. the downstream enhancer region is encompassed on a Sad restriction fragment extending from +6 kb to +11 kb relative to the start site of transcription. As expected from an enhancer sequence, the downstream enhancer is able to exert its effect when placed in either reverse or direct orientation (relative to the orientation of the H19 enhancer in the endogenous HI 9 gene) downstream from the coding region of a heterologous gene under the control of the HI 9 promoter. Additionally, fragments of this enhancer containing the sequences as shown in Figures 6, 7A, 7B and 8A-8C (SEQ ID NOS:3-5) may also be used to facilitate gene expression.

The expression of the IGF-1 gene has been associated with lung cancer and breast cancer. The IGF-1 promoter (nucleotide sequence between nucleotides 1 to 1630 in the human IGF-1 gene sequence (Genbank accession number M 12659 M77496 incorporated herein by reference; Rotwein et al., 1986, J. Biol. Chem. 261 :4828-4832).

The IGF-2 gene product is expressed using one of four different promoter regions. Three of these four promoters are imprinted and are expressed in embryonic tissues; promoter PI, however, is activated in adult tissues only (Sussenbach et al., 1992, Growth Reg. 2: 1-9). The P3 promoter has been implicated in hepatocarcinoma. It has also been discovered that the imprinted P4 promoter (nucleotide sequence -546 to +102 of the IGF-2 gene) and P3 promoter (nucleotide sequence -1229 to +140 of IGF-2 gene) are activated in human bladder cancer cells, and may be used to direct expression of an operatively linked heterologous gene to tumor cells. The IGF-2 P3 and SUBSTITUTE SHEET (RULE 28) P4 promoters may be used in combination with the H19 enhancer or active fragments thereof.

These regulatory sequences from genomically imprinted and non-imprinted genes that are expressed in cancer cells can be further delineated to define the minimal regulatory sequences required to obtain the desired tumor specific expression. For example, the promoter region may be altered by additions, substitutions or deletions and assayed for retention of tumor specific expression function. Various portions of the HI 9 downstream enhancer may be tested individually for the ability to enhance transcription from the HI 9 promoter.

Alterations in the regulatory sequences can be generated using a variety of chemical and enzymatic methods which are well known to those skilled in the art. For example, regions of the sequences defined by restriction sites can be deleted. Oligonucleotide-directed mutagenesis can be employed to alter the sequence in a defined way and/or to introduce restriction sites in specific regions within the sequence. Additionally, deletion mutants can be generated using DNA nucleases such as Bal31 or ExoIII and S I nuclease. Progressively larger deletions in the regulatory sequences are generated by incubating the DNA with nucleases for increased periods of time (See Ausubel, et al., 1989 Current Protocols for Molecular Biology, for a review of mutagenesis techniques).

The altered sequences are evaluated for their ability to direct tumor specific expression of heterologous coding sequences in appropriate host cells, particularly H19-expressing carcinoma-derived cells {e.g. bladder carcinoma cells, to name an example). It is within the scope of the present invention that any altered regulatory sequences which retain their ability to direct tumor specific expression be incorporated into recombinant expression vectors for further use. ' SUBSTITUTE SHEET (ROLE 2<S>) A wide variety of heterologous genes can be expressed under the control of these regulatory sequences such as genes encoding toxic gene products, potentially toxic gene products, and antiproliferation or cytostatic gene products. Marker genes can also be expressed including enzymes, (e.g. CAT, beta-galactosidase, luciferase), fluorescent proteins such as green fluorescent protein, or antigenic markers.

Cytotoxic gene products are broadly defined to include both toxins and apoptosis-inducing agents. Additionally, for purposes of the invention, cytotoxic gene products include drug metabolizing enzymes which convert a pro-drug into a cytotoxic product. Examples of cytotoxic gene products that may be used in methods of the invention comprise diphtheria toxin, Pseudomonas toxin, ricin, cholera toxin, PE40 and tumor suppressor genes such as the retinoblastoma gene and p53. Additionally, sequences encoding apoptotic peptides that induce cell apoptosis may be used. Such apoptotic peptides include the Alzheimer's A beta peptide (see LaFerla et al, 1995, Nat. Genet. 9:21-30), the atrial natriuretic peptide (see Wu et al, 1997, J. Biol. Chem. 272:14860-14866), the calcitonin gene-related peptide (see Sakuta et al, 1996, J. Neuroimmunol. 67:103-109), as well as other apoptotic peptides known or to be discovered.

Drug metabolizing enzymes which convert a pro-drug into a cytotoxic product include thymidine kinase (from herpes simplex or varicella zoster viruses), cytosine deaminase, nitroreductase, cytochrome p-450 2B1, thymidine phosphorylase, purine nucleoside phosphorylase, alkaline phosphatase, carboxypeptidases A and G2, linamarase, -J lactamase and xanthine oxidase) see Rigg and Sikora, August 1997, Mol. Med. Today, pp. 359-366 for background).

Additionally, antisense, antigene, or aptameric oligonucleotides may be delivered to cancer cells using the presently described expression constructs. Ribozymes or single-stranded RNA can also be expressed in the cancer. cell to inhibit the expression of a particular gene of interest. The target genes for these antisense or ribozyme molecules should be those encoding gene products that are essential for cell maintenance or for the maintenance of the cancerous cell phenotype. Such target genes include but are not limited to cdk2, cdk8, cdk21, cdc25A, cyclinDl, cyclinE, cyclinA and cdk.4.

For example, vectors which express, under the control of regulatory sequences from imprinted genes or IGF-1 promoter that are expressed in cancer cells, antisense R As or ribozymes specific for the transcripts of oncogenic forms of p53, c-fos, c-jun, Kr-ras and/or Her2/neu are introduced into cells in order to down-regulate expression of the endogenous genes. Tumor cells which express HI 9. and can activate the H19 regulator}' sequences, (or which specifically activate IGF-1, the IGF-2 P3 or P4 promoter) can be specifically targeted for expression of the antisense RNA or ribozyme RNA.

Antisense approaches involve the design of oligonucleotides (in this case, mRNA) that are complementary to the target mRNA. The antisense oligonucleotides will bind to the complementary target mRNA transcripts and prevent translation. Absolute complementarity, although preferred, is not required. A sequence "complementary" to a portion of an RNA. as referred to herein, means a sequence having sufficient complementarity to be able to hybridize with the RNA, forming a stable duplex. The ability to hybridize will depend on both the degree of complementarity and the length of the antisense nucleic acid. Generally, the longer the hybridizing nucleic acid, the more base mismatches with an RNA it may contain and still form a stable duplex (or triplex, as the case may be). One skilled in the art can ascertain a tolerable degree of mismatch by use of standard procedures to determine the melting point of the hybridized complex.

Oligonucleotides that are complementary to the 5' end of the target message, e.g., the 5' untranslated sequence up to and including the AUG initiation codon, should work most efficiently at inhibiting translation. However, sequences complementary to the 3' untranslated sequences of SUBSTITUTE SHEET (RULE 2® mRNAs have recently shown to be effective at inhibiting translation of rnRNAs as well. See generally, Wagner, R., 1994, Nature 372:333-335. Thus, oligonucleotides complementary to either the 5'- or 3'- non-translated, non-coding regions of the target gene transcripts could be used in an antisense approach to inhibit translation of endogenous genes. Oligonucleotides complementary to the 5' untranslated region of the mRNA should include the complement of the AUG start codon. Antisense oligonucleotides complementary to mRNA coding regions are less efficient inhibitors of translation but could be used in accordance with the invention. Whether designed to hybridize to the 5', 3' or coding region of the target mRNA, antisense nucleic acids should be at least six nucleotides in length, and are preferably oligonucleotides ranging from 6 to about 50 nucleotides in length. In specific aspects the oligonucleotide is at least 10 nucleotides, at least 17 nucleotides, at least 25 nucleotides or at least 50 nucleotides.

Regardless of the choice of target sequence, it is preferred that in vitro studies are first performed to quantitate the ability of the antisense oligonucleotide to inhibit gene expression. These studies should utilize controls that distinguish between antisense gene inhibition and nonspecific biological effects of oligonucleotides. It is also preferred that these studies compare levels of the target RNA or protein with that of an internal control RNA or protein.

Ribozyme molecules designed to catalytically cleave an essential target gene can also be used to prevent translation of target mRNA. (See, e.g., PCT International Publication WO90/11364, published October 4, 1990; Sarver et al., 1990, Science 247:1222-1225). When the ribozyme is specific for a gene transcript encoding a protein essential for cancer cell growth, such ribozymes can cause reversal of a cancerous cell phenotype. While ribozymes that cleave mRNA at site specific recognition sequences can be used to destroy target mRNAs, the use of hammerhead ribozymes is preferred. Hammerhead ribozymes cleave mRNAs at locations dictated by flanking regions that form complementary base pairs with the target mRNA. The sole requirement is that the target mRNA have the following sequence of two bases: 5'-UG-3'. Construction and production of hammerhead ribozymes is well known in the art and is described more fully in Haseloff and Gerlach, 1988, Nature, 334:585-591. Preferably the ribozyme is engineered so that the cleavage recognition site is located near the 5' end of the target mRNA; i.e., to increase efficiency and minimize the intracellular accumulation of non-functional mRNA transcripts.

Ribozymes for use in the present invention also include . RNA endoribonucleases (hereinafter "Cech-type ribozymes") such as the one which occurs naturally in Tetrahymena thermophila (known as the IVS, or L-19 TVS RNA) and which has been extensively described by Thomas Cech and collaborators (Zaug et al, 1984, Science, 224:574-578; Zaug and Cech, 1986, Science, 231:470-475; Zaug et al, 1986, Nature, 324:429-433; published International Patent Application No. WO 88/04300 by University Patents Inc.; Been and Cech, 1986, Cell, 47:207-216). The Cech-type ribozymes have an eight base pair active site which hybridizes to a target RNA sequence whereafter cleavage of the target RNA takes place. The invention contemplates the use of those Cech-type ribozymes which target eight base-pair active site sequences that are present in target genes. .2 Activation of Genes In Tumor Cells Cells that reactivate imprinted gene expression will also be capable of specifically activating expression constructs containing such imprinted gene regulator}' regions operatively linked to a heterologous gene. Such cells, particularly tumor cells, are appropriate targets for the gene therapy methods of the invention. HI 9, and IGF-2 P3 and P4 specific expression in both tumors and cell lines may be determined using the techniques of RNA analysis, in situ SUBSTITUTE SHEET (!RULE 26) hybridization and reporter gene constructs. In addition, tumor cells with activated IGF-1 gene expression may be similarly determined and targeted in gene therapy using the IGF-1 promoter to direct expression of a heterologous gene.

For most RNA analysis applications, a labeled probe that specifically hybridizes to the gene transcript of interest is prepared using any number of techniques well known in the art. The labeled probe can contain at least 15-30 bases complementary to the H19 nucleotide sequence, and more preferably contains at least 50 to 150 bases complementary to the H19 transcript. A particularly preferred hybridization probe for HI 9 expression is a polynucleotide complementary to the 3' end of the H19 message from approximately 800 base pairs upstream of the poly A site to the poly A site.

In a specific embodiment of the invention illustrated below by way of working example, a labeled antisense RNA probe is generated in vitro using a T7 or T3 expression plasmid. H19 probes can also be labeled by random priming in the presence of labeled nucleotide, for example, using the Prime-It kit (Stratagene, La Jolla, CA; Catalog No. 300392). Alternatively, labeled probes can be generated in a PCR reaction using a cDNA clone of the HI 9 coding region and primers designed to amplify a region of the coding region, or by a standard nick translation reaction.

Labels appropriate for polynucleotide probes include nucleotides incorporating radioactive isotopes (such as 35S and 32P), fluorescent, luminescent and color tags, and enzymatic moieties.

The labeled probe is hybridized in situ to a cell or tissue sample using standard techniques such as described below by of working example, and in co-pending U.S. patent application Serial No. 08/704,786, incorporated herein by reference. Alternatively, if a sufficient quantity of the appropriate cells can be obtained, standard RNA analysis (such as Northern analysis, RNase SOBSTSTUTE SHEET (RULE 2®) protection or primer extension) can be performed to determine the level of mR A expression of the gene of interest.

Additionally, it is possible to perform such gene expression assays "in situ", i.e., directly upon tissue sections (fixed and/or frozen) of patient tissue obtained from biopsies or resections, such that no nucleic acid purification is necessary. Nucleic acid reagents such as those described above may be used as probes and/or primers for such in situ procedures (See, for example. Nuovo, G.J., 1992, "PCR In Situ Hybridization: Protocols And Applications", Raven Press, NY).

An alternative method to determine if a cell type or tumor will be capable of specifically activating expression constructs containing the particular regulatory regions operatively linked to a heterologous gene is to actually transfect such expression constructs into the cell. For these purposes, the heterologous gene is preferably a marker gene product. A positive result in an assay for the marker gene product reveals that the cell or cell line is capable of activating expression from the regulatory regions.

Using these techniques, exemplary tumor types with activated HI 9 expression are as follows: A. Pediatric solid tumors 1. Wilm's tumor 2. Hepatoblastoma 3. Embryonal rhabdomyosarcoma B. Germ cell tumors and trophoblastic tumors 1. Testicular germ cell tumors 2. Immature teratoma of ovary 3. Sacrococcygeal tumor 4. Choriocarcinoma . ' Placental site trophoblastic tumors SUBST8TUTE SHEET (RULE 2S) C. Epithelial adult tumors 1. Bladder carcinoma 2. Hepatocellular carcinoma - ;> . Ovarian carcinoma 4. Cervical carcinoma . Lung carcinoma 6. Breast carcinoma 7. Squamous cell carcinoma in head and neck 8. Esophageal carcinoma 9. Thyroid carcinoma D. Neurogenic tumors 1. Astrocytoma 2. Ganglioblastoma 3. Neuroblastoma Accordingly, the above cancers are treatable by the methods of the invention.

In fact, any tumors which activate HI 9 expression may be treated by the methods of the invention.

Additionally, the aforementioned techniques may be applied to determine tumors that activate the IGF-1, and the IGF-2 P3 and P4 promoters. Such tumors are also treatable by the methods of the invention. For example, IGF-2 is activated in childhood tumors, such as Wilm's tumors, rhabdomyosarcomas, neuroblastomas and hepatoblastomas. .3 Methods Of Introducing Polynucleotides Under The Control Of Regulatory Sequences Into Host Cells The invention also pertains to a host cell transfected with polynucleotides containing regulatory regions operatively linked to a heterologous gene. Such host cells may be maintained in culture or may be part of an animal, preferably a mammal. Polynucleotides of interest are typically SOBST8TUTE SHEET (RULE 26) inserted into any of a wide range of vectors which are subsequently delivered using the presently disclosed methods and materials. Such vectors can be produced using well established molecular biology techniques (see generally, Sambrook et al. (1989) Molecular Cloning Vols. I-IIL Cold Spring Harbor Laborator}' Press, Cold Spring Harbor, New York, and Current Protocols in Molecular Biology (1989) John Wiley & Sons, all Vols, and periodic updates thereof, herein incorporated by reference). Typically, where translation is desired, the heterologous genes of interest will also be engineered to comprise a suitable 3' polyadenylation sequence if necessary. .3.1 Cultured Ceils . Host cells transfected with polynucleotides containing imprinted gene regulatory regions operatively linked to a heterologous gene may be any prokaryotic or eukaryotic ceil. Ligating the polynucleotide into a gene construct, such as a vector, and transforming or transfecting into host cells, either eukaryotic (yeast, avian, insect or mammalian) or prokaryotic (bacterial cells) are standard procedures used widely in the microbial or tissue-culture technologies.

Vectors suitable for cultivation of the subject polynucleotides in bacterial cells, such as E. coli, include plasmids of the types: pBR322-derived plasmids, pEMBL-derived plasmids, pEX-derived plasmids, pBTac-derived plasmids, and pUC-derived plasmids. For replication in yeast, the YEP24, YIP5, YEP51, pYES2 and YRP17 plasmids are cloning and expression vehicles useful in the introduction of genetic constructs in S. cerevisiae (see, for example, Broach et al, 1993, in Experimental Manipulation of Gene Expression, ed. M. Inouye, Academic press, p. 83). These vectors can replicate in both E. coli due to the presence of the pBR322 ori, and in yeast due to the replication determinant of the yeast 2 *?m circle plasmid. In addition, drug resistant markers such as ampicillin can be used- SU©ST3TUTE SHEET (I3ULE 28) Similarly, preferred mammalian vectors for the polynucleotides of the invention contain both prokaryotic sequences to facilitate the propagation of the vector in bacteria. Such vectors, when transfected into mammalian cells, can be designed to integrate into the mammalian chromosome for long term stability by use of a linked selectable marker gene. Alternatively, derivatives of viruses such as the bovine papillomavirus (BPV-1) or Epstein-Barr virus can be used for transient expression. The various methods employed in the preparation of plasmid transformation of host organisms are well known in the art. For other suitable vector systems, as well as general recombinant procedures, see Sambrook et al, supra. .3.2 Geae Therapy The invention also encompasses the use of polynucleotides containing a gene regulatory region operatively linked to a heterologous gene for use in gene therapy to treat cancer and hyperproliferative diseases. For gene therapy purposes, expression constructs of the instant invention may be administered in any biologically effective carrier, e.g., any formulation or composition capable of effectively delivering the recombinant gene to cells in vivo. Approaches include insertion of the subject gene in viral vectors including recombinant retroviruses, adenovirus, adeno-associated virus, and herpes simplex virus- 1, or recombinant bacterial or eukaryotic plasmids. Viral vectors transfect cells directly: plasmid DNA can be delivered with the help of, for example cationic polymers, cationic liposomes (e.g. lipofectin, cholesterol derivatives such as D.D.A.B. and cationic phospholipids) or derivatized (e.g., antibody conjugated), polylysine conjugates, gramicidin S, artificial viral envelopes or other such intracellular carriers, as well as direct injection of the naked gene construct, electroporation or CaP04 precipitation carried out in vivo. A recent review of gene transfer and expression systems for cancer gene therapy is Cooper, 199.6, Seminars in Oncology 23: 172-187.

It will be appreciated that because transduction of appropriate target cells represents an important first step in gene therapy, choice of the particular gene deliver}' system will depend on such factors as the phenotype of the intended target and the route of administration, e.g. locally or systemically. Furthermore, it will be recognized that the particular gene construct provided for in vivo transduction of expression constructs are also useful for in vitro transduction of cells, such as for use in the ex vivo tissue culture systems described above.

A preferred approach for in vivo introduction of nucleic acid into a cell is by use of a viral vector containing nucleic acid, e.g., a particular cytotoxic gene under the control of HI 9 regulatory sequences. Infection of cells with a viral yector has the advantage that a large proportion of the targeted cells can receive the nucleic acid. Additionally, molecules encoded within the viral vector, e.g., by a cDNA contained in the viral vector, are expressed efficiently in cells which have taken up viral vector nucleic acid. Suitable vectors which can be delivered using the presently disclosed methods and compositions include, but are not limited to, herpes simplex virus vectors, adenovirus vectors, adeno-associated virus vectors, retroviral vectors, pseudorabies virus, alpha-herpes virus vectors, and the like. A thorough review of viral vectors, particularly viral vectors suitable for modifying nonreplicating cells, and how to use such vectors in conjunction with the expression of polynucleotides of interest can be found in the book "Viral Vectors: Gene Therapy and Neuroscience Applications" Ed. Caplitt and Loewy, Academic Press, San Diego (1995).

It has been shown that it is possible to limit the infection spectrum of viruses and consequently of viral-based vectors, by modifying the viral packaging proteins on the surface of the viral particle (see, for example PCT publications W093/25234 and WO94/06920). For instance, strategies for the modification of the infection spectrum of retroviral vectors include: coupling SUBSTITUTE SHEET (BOLE 28) antibodies specific for cell surface antigens to the viral env protein (Roux et al, 1989, Proc. Nat. Acad. Sci. USA 86:9079-9083; an et al, 1992, J. Gen. Virol. u3:3251-3255; and Goud et al, 1983, Virology 163:251-254); or coupling cell surface receptor ligands to the viral env proteins (Neda et al, 1991. J. Biol. Chem 266:14143-14146). Coupling can be in the form of the chemical CToss-linking with a protein or other variety {e.g. lactose to convert the env protein to an asialogycoprotein), as well as by generating fusion proteins {e.g. single-chain antibody/env fusion proteins). For example, cancer cells may be targeted using this technique by, for example, coupling antibodies against tumor-associated molecules or cancer cell surface proteins to the surface of the recombinant virus. This technique, while useful to limit or otherwise direct the infection to certain tissue types, can also be used to convert an ectotropic vector into an amphotropic vector.

A preferred viral gene delivery system useful in the present invention utilizes adenovirus-derived vectors. The genome of an adenovirus can be manipulated such that it encodes and expresses a gene product of interest but is inactivated in terms of its ability to replicate in a normal lytic viral life cycle. See for example Berkner et al, 1988, BioTechniques 6:616; Rosenfeld et al, 1991 , Science 252:431-434; and Rosenfeld et al, 1992, Cell 68:143-155. Suitable adenoviral vectors derived from the adenovirus strain AD type 5 dl324 or other strains of adenovirus {e.g., Ad2, Ad3, Ad7 etc.) are well known to those skilled in the art. Recombinant adenoviruses can be advantageous in certain circumstances in that they can be used to infect a wide variety of cell types, including airway epithelium (Rosenfeld et al, 1992, cited supra), endothelial cells (Lemarchand et al, 1992, Proc. Natl. Acad Sci. USA 89:6482-6486), hepatocytes (Herz and Gerard, 1993, Proc. Natl Acad. Sci USA 90:2812-2816) and muscle cells (Quantin et al, 1992, Proc. Natl. Acad. Sci USA 89:2581-2584). Furthermore, the virus particle is relatively stable, amenable to purification and concentration, and can be modified so as to affect the spectrum of infectivity. Additionally, introduced adenoviral DNA (and foreign DNA contained therein) is not integrated into the genome of a host cell but remains episomal, thereby avoiding potential problems that can occur as a result of insertional mutagenesis in situations where introduced DNA becomes integrated into the host genome (e.g., retroviral DNA). Moreover, the carrying capacity of the adenoviral genome for foreign DNA is large (up to 8 kilobases) relative to other gene delivery vectors (Berkner et al, cited supra, Haj-Ahmand and Graham, 1986, J. Virol. 57:267). Most replication-defective adenoviral vectors currently in use and therefore favored by the present invention are deleted for all or part of the viral El and E3 genes but retain as much as 80% of the adenoviral genetic material (see, e.g., Jones et al, 1979, Cell 16:683; Berkner et al., supra; and Graham et al. in Methods in Molecular Biology, E.J. Murray, Ed. (Humana, Clifton NJ, 1991) vol. 7, pp. 109-127).

Another viral vector system ' useful for delivery of one of the subject expression constructs is the adeno-associated virus (AAV). Adeno-associated virus is a naturally occurring defective virus that requires another virus, such as an adenovirus or a herpes virus, as a helper virus for efficient replication and a productive life cycle. (For a review see Muz czka et al., 1992, Curr. Topics in Micro, and Immunol. 158:97-129). It is also one of the few viruses that may integrate its DNA into non-dividing cells, and exhibits a high frequency of stable interaction (see for example Flotte et al., 1992, Am. J. Respir. Cell. Mol. Biol. 7:349-354; Samulski et al, 1989, J. Virol. 63:3822-3828; and McLaughlin et al, 1989, J. Virol. 63:1963-1973). Vectors containing as little as 300 base pairs of AAV can be packaged and can integrate. Space for exogenous DNA is limited to about 4.5 kb. An AAV vector such as that described in Tratschin et al, 1985, Mol. Cell. Biol. 5:3251-3260 can be used to introduce DNA into cells. A variety of nucleic acids have been introduced into different cell types using AAV vectors (see for example Hermonat et al, 1984, Proc. Natl. Acad. Sci USA 81 :6466-6470; Tratschin et al, 1985, Mol. Cell.

SUBSTSTOTE SHEET (HOLE 2®) Biol. 4:2072-2081 ; Wondisford et al, 1988, Mol. Endocrinol. 2:32-39; Tratschin et al, 1984, J. Virol. 51 :611-619; and Flotte et al, 1993, J. Biol. Chem. 268:3781-3790).

In addition to viral transfer methods, such as those illustrated above, non-viral methods can also be employed to cause directed expression of a desired heterologous gene in the tissue of an animal. Most nonviral methods of gene transfer rely on normal mechanisms used by mammalian cells for the uptake and intracellular transport of macromolecules. In preferred embodiments, non-viral gene delivery systems of the present invention rely on endocytic pathways for the uptake of the subject expression constructs by the targeted cell. Exemplary gene delivery systems of this type include liposomal derived systems, poly-lysine conjugates, and artificial viral envelopes.

In clinical settings, the gene delivery systems for the therapeutic expression construct can be introduced into a patient by any of a number of methods, each of which is well known in the art. For instance, a pharmaceutical preparation of the gene delivery system can be introduced systemically, e.g. by intravenous injection, and specific expression of the construct in the target cells occurs predominantly from specificity of transfection provided by cell-type or tissue-type expression due to the regulatory sequences controlling expression of the heterologous gene, or the regulatory sequences in combination with the gene delivery vehicle targeting particular cell types. In other embodiments, initial deliver}' of the recombinant expression construct is more limited with introduction into the animal being quite localized. For example, the gene delivery vehicle can be introduced by catheter (see U.S. Patent 5,328,470) or by stereotactic injection (e.g. Chen et al., 1994, Proc. Nat. Acad. Sci. USA 91 :3054-3057). An expression construct of the invention can be delivered in a gene therapy construct by electroporation using techniques described, for example, by Dev et al, 1994, Cancer Treat. Rev. 20:105-1 15.

SUBSTITUTE SHEET (RULE 28) The pharmaceutical preparation of the gene therapy construct can consist essentially of the gene delivery system in an acceptable diluent, or can comprise a slow release matrix in which the gene deliver}' vehicle is embedded. Alternatively, where the complete gene delivery system can be produced intact from recombinant cells, e.g., retroviral vectors, the pharmaceutical preparation can comprise one or more cells which produce the gene delivery system. .3.3 Therapeutic endpoints and dosages One of ordinary skill will appreciate that, from a medical practitioner's or patient's perspective, virtually any alleviation or prevention of an undesirable symptom associated with a cancerous condition (e.g., pain, sensitivity, weight loss, and the like) would be desirable. Additionally, any reduction in tumor mass or growth rate is desirable, as well as an improvement in the histopathological picture of the tumor. Thus, for the purposes of this Application, the terms "treatment", "therapeutic use", or "medicinal use" used herein shall refer to any and all uses of the claimed compositions which remedy a disease state or symptoms, or otherwise prevent, hinder, retard, or reverse the progression of disease or other undesirable symptoms in any way whatsoever.

An effective dosage and treatment protocol may be determined by conventional means, starting with a low dose in laboratory animals and then increasing the dosage while monitoring the effects, and systematically varying the dosage regimen as well. Animal studies, preferably mammalian studies, are commonly used to determine the maximal, tolerable dose, or MTD, of bioactive agent per kilogram weight. Those skilled in the art regularly extrapolate doses for efficacy and avoiding toxicity to other species, including human.

Before human studies of efficacy are undertaken, Phase I clinical studies in normal subjects help establish safe doses. Numerous factors may be taken into consideration by a clinician when determining an optimal dosage for a given subject. Primary among these is the toxicity and half-life of the chosen heterologous gene product. Additional factors include the size of the patient, the age of the patient, the general condition of the patient, the particular cancerous disease being treated, the severity of the disease, the presence of other drugs in the patient, the in vivo activity of the gene product, and the like. The trial dosages would be chosen after consideration of the results of animal studies and the clinical literature.

For example, a typical human dose of an adenoviral vector containing an HI 9 regulator}' region operatively linked to a heterologous gene encoding a cytotoxic agent such as thymidine kinase is from 1 x 107 pfu to 1 x 1010 pfu injected directly into the tumor mass per day. More preferably, the daily dose of such an adenoviral vector injected directly into a tumor would be from 1 x 10s piii to 1 x 1010 pfu, depending upon the tumor size. For an adenoviral vector containing an H19 regulatory region operatively linked to a cytotoxic gene product with a different level of toxicity, these values would of course be altered accordingly. Similar doses of an adenoviral vector containing an IGF-2 P4 promoter operatively linked to a heterologous gene encoding a cytotoxic agent such as thymidine kinase can also be used as a suggested starting point.

Particularly where in vivo use is contemplated, the various biochemical components of the present invention are preferably of high purity and are substantially free of potentially harmful contaminants (e.g., at least National Food (NF) grade, generally at least analytical grade, and preferably at least pharmaceutical grade). To the extent that a given compound must be synthesized prior to use, such synthesis or subsequent purification shall preferably result in a product that is substantially free of any potentially toxic agents which may have been used during the synthesis or purification procedures.

For use in treating a cancerous condition in a subject, the present invention also provides in one of its aspects a kit or package, in the form of a sterile-filled vial or ampoule,, that contains a polynucleotide vector containing SUBSTITUTE SHEET (RULE 2®D an HI 9 regulatory region operatively linked to a heterologous gene encoding a cytotoxic agent or a vector-releasing cell. In one embodiment, the kit contains a polynucleotide vector containing an HI 9 regulator}' region operatively linked to a'" heterologous gene encoding a cytotoxic agent, as an administration-ready formulation, in either unit dose or multi-dose amounts, wherein the package incorporates a label instructing use of its contents for the treatment of cancer. Alternatively, and according to another embodiment of the invention, the package provides a sterile-filled vial or ampoule containing such a vector-releasing cell or cell line. For storage and transport, the vector-releasing cell or cell line should be frozen. Optionally, the package may also contain media and reagents for culturing the vector-releasing cell or cell line.

The invention having been described, the following examples are offered by way of illustration and not limitation. 6. Example: H19 Regulatory Sequences Facilitate Expresskra of a Heterologous Gene in Tumor Cell Lines This' section describes the construction of a variety of expression constructs containing a CAT reporter gene placed under the control of H19 regulatory sequences and their transfer into several different bladder cancer cell lines. 6.1 Materials and Methods 6.1.1 Cell Lines and Transfections Bladder cancer cell lines HT-1376, EJ28, T24P, 1 197 and UM-UC-3 were obtained from the American Type Culture Collection (ATCC) and maintained according to ATCC recommendations.

Transient transfections were carried out using the calcium phosphate precipitation transfection method. Precipitants (containing 7 ^g plasmid) were added in 1 ml of media to 0.3 x 106 cells in 30 mm dishes. After 16 hours, transfection media was removed and fresh media added. Cells were harvested SUBSTITUTE SHEET (RULE 2S) 24-96 hours after transfection and CAT activity determined using the butyryl-CoA organic phase extraction procedure (Sambrook et al, 1989). An aliquot of the organic upper phase (100 was transferred to a scintillation well containing 3 ml of scintillation fluid and counted- 6.1.2 Construction of Expression Vectors Plasmids pCAT-basic (containing a CAT reporter gene preceded by a multiple cloning site), pCAT-promoter (containing the CAT reporter gene under the control of an SV40 promoter), pCAT-enhancer (containing the SV40 enhancer downstream of the CAT reporter gene, and a multiple cloning site for insertion of a promoter upstream of the CAT reporter gene) and pCAT-control (containing the CAT reporter gene under control of both the SV40 promoter and enhancer) were all obtained commercially from Promega (Madison, WI).

To construct the plasmid pH19E, containing the CAT reporter gene under the control of the HI 9 promoter, the HI 9 promoter region (SEQ ID NO:l) was first cloned into pBluescript II SK+ (Promega). A polynucleotide containing the HI 9 promoter sequence was amplified from human placenta DNA using primers ESPCR21 : CGGTTCCCCACTTCCCCAGTTT (SEQ ID NO:6) and ESPCR22: CGGAAGTCGACAACCCTCACCAAAGGCCAAGGT (SEQ ID NO:7).

The PCR product was end-polished with Klenow enzyme and cloned into the EcoRV site of pBluescriptllSK-h The inserted DNA was verified by digestion with the internally cutting enzymes PvuII, EcoRI and Apal. The orientation of the promoter was opposite that of the lacZ coding region of the vector. The promoter region was then excised by cleavage with Hindlll and Pstl, and the resulting approximately 0.9 kb fragment was inserted into the Hindlll-PstI sites of pCAT-basic to produce pH19E.

Expression plasmids containing the HI enhancer region inserted in both orientations downstream of the HI 9 promoter/CAT reporter gene were constructed as follows. A 5 kb Sad fragment containing the H19 downstream enhancer (from +6.0 kb to +1 1 kb relative to the start of HI 9 transcription) was cloned into the Sad site of pUC19. This enhancer fragment was then excised with EcoRI and Hindlll and ligated into the EcoRI-Hindlll sites of pBluescript II SK+ to create pBhH19En-Sa. pBhH19En-Sa was partially digested with BamHI, and the 5 kb fragment containing the HI 9 enhancer (and an internal BamHI site) was cloned into the BamHI site downstream of the H19 promoter/CAT reporter gene in pH19E. Plasmids containing the HI 9 enhancer in both the direct (pH19EH19D) and reverse (pH19EH19R) orientations were generated. 6.2 Results and Discussion Five different bladder cancer cell lines HT-1376, EJ28, T24P, 1197 and UM-UC-3 were each transfected with pCAT-basic (designated P-E in Figure 2), pCAT-control (designated pSV40ESV40 in Figure 2), pH19E, pH19EH19D and pH19EH19R. The expression results of each construct are presented in Figure 3A-3E. In each cell line, the highest level of CAT activity was observed with the pCAT-control plasmid containing both the SV40 enhancer and SV40 promoter. This construct served as a positive control, as SV40 regulatory sequences have been established as inducers of gene expression. However, SV40 regulatory sequences are not tumor cell-specific in their ability to induce gene expression. Cell lines transfected with pH19E, containing the CAT reporter gene under the control of the H19 promoter, also exhibited significantly increased expression of CAT over background. The level of induction of CAT activity by the HI 9 promoter ranged from five fold in the HT-1376 cell line to ten fold in the UM-UC-3 cell line. Addition of the HI 9 enhancer to the HI 9 promoter/CAT reporter gene constructs further increased SUBSTBTUTE SHEET (RULE 2< ) levels of expression in certain cell lines. For example, in cell lines EJ28, T24P and 1 197. the H19 enhancer significantly increased expression from the H19 promoter/CAT reporter gene. However, the orientation of the enhancer gave different results in different cell lines. In cell lines HT-1376 and UM-UC-3, the enhancer had little or no effect on expression.

The results demonstrate that the human HI 9 promoter region directs the expression of an operatively linked heterologous reporter gene in a wide variety of bladder cancer-derived cell lines. In some bladder cancer-derived cell lines, the HI 9 enhancer can further increase expression of a reporter gene under the control of HI 9. 7. . Example: A Toxin Gene Under The Control Of HI 9 Regulatory Sequences 7.1 Materials and Methods The expression constructs described above in Section 6 are modified to express a sequence encoding a toxic product or a prodrug instead of CAT. For example, the sequence encoding the CAT gene product is removed and replaced with a sequence encoding herpes simplex virus thymidine kinase (HSV-TK) using standard cloning methods that are well known in the art.

The H19/prodrug expression plasmids are transfected into bladder cancer-derived cell lines as described in Section 6. When transfected into bladder cancer cell lines, an H19/HSV-TK expression plasmid induces bladder cancer cell specific cytotoxicity in the presence of ganciclovir. 8. Example: Expression Of H19 In A Mouse Model Of Chemically Induced Bladder Carcinoma 8.1 · Materials and Methods Seventy five-week old female C3H/He mice (Charles River) were housed at 6 mice per cage and allowed to acclimatize in an air-conditioned SUBSTITUTE SHEET (HULE 2S) room with a 12 hour light/12 hour dark cycle. At 8 weeks of age, the experiment was begun and the mice divided arbitrarily into a control group (10 mice) and experimental group (60 mice). The experimental group of mice were given 0.05% N-butyl-N-(4-hydroxybutyl)nitrosamine (BBM) (Tokyo Kasei Kogyo Co. Ltd., Tokyo, Japan) dissolved in their drinking water ad libitum. Control mice were given tap water. Animals from both groups were killed at 4, 8, 12, 16, 20 and 26 weeks after the start of the experiment. The bladders were excised, fixed, and embedded in paraffin blocks using standard procedures. 8.1.1 Preparation of Probe A 2.1 kb fragment containing the mouse HI 9 coding region was subcloned into the pBluescript II KS plasmid (Stratagene, La Jolla, CA) behind the T7 and T3 RNA polymerase binding sites. [J S]-labeled antisense HI 9 RNA was produced in vitro from Hindlll-linearized plasmid DNA using T7 polymerase (Boehringer Mannheim) and an Amersham RPN 2006 kit. In vz'rro-generated transcripts had a specific activity of 107 cpm g. Sense H19 mRNA, prepared with T3 polymerase (Boehringer Mannheim) and EcoRI-linearized template, was used as a control. 8.1.2 In situ Hybridization Paraffin wax sections (5"?M) of formalin fixed tissues were mounted on 3-aminopropyltriethoxylane (Tespa, Sigma) coated microscope slides and dried overnight at 37°C. Sections were dewaxed with xylene, fixed with 4% paraformaldehyde, and then treated with proteinase K (Sigma). Slides were acetylated to reduce non-specific binding of the probe and dehydrated through an ethanol series. [j5S]-labeled RNA probes (specific activity of 50,000 cpu l) were hybridized as described by Rangini et al Ί 991 »-Mech. Dev. 35:13-24, omitting the thio-AMP step. Slides were exposed to film for 10 days, and counter-stained with hematoxylin and eosin. The slides were examined and photographed using a Polyvar (Reichert Jung) microscope under bright and SUBSTBTUTE SHEET (RULE 26) dark field illumination. Controls included hybridization with sense R A probe and RNAse prehybridization treatment. Additionally, sections of bladders from adult healthy mice (which do not express HI 9) and embryonal mouse bladders (which do express HI 9) served as negative and positive controls, respectively. 8.2 Results and Discussion By 26 weeks, all of the surviving experimental group mice had developed palpable bladder tumors. Extensive expression of HI 9 was observed in the chemically induced bladder tumors. In contrast, no expression of HI 9 was detected in normal adult bladder. Accordingly, this mouse model of chemically induced bladder cancer may be used as an animal model to demonstrate the tumor-specific cytotoxicity in vivo of constructs containing the H19 regulatory regions operatively linked to a toxin gene.

Gene Therapy Using H19 Regulatory Sequences To Express A Heterologous Gene In A Mouse Model of Bladder Carcinoma The H19/toxin or prodrug expression plasmids are incorporated into liposomes (as described by Takashita et al, 1993, J. Clin. Invest. 93:652-651, incorporated herein by reference) for deliver}7 to mouse bladder in vivo. Mice used for this experiment have chemically induced bladder tumors as described above in Section 8.

Briefly. 5( g of plasmid DNA, dissolved in 500"? 1 of Optimen's serum-free medium (BRL Life Technologies. Gaithersburg, MD) is added to 250 ^l of Lipofectamine 250 of water. The mixture is incubated for 30 minutes at room temperature, then diluted in 10 mis of balanced salt solution (BSS(-): 140 mM NaCl, 5.4 mM KCl, 10 mM Tris-HCI, pH 7.6). After pelleting by centrifuging the solution at 15,000 rpm for 30 minutes, the liposomes are resuspended in 1 ml of BSS(-) containing 1 mM CaC . Approximately 0.2 mis of the concentrated liposomes SUBST3TUTE SHEET (RULE 26) are administered to mice that have chemically induced bladder tumors via catheter. A control group of mice with bladder tumors receive liposomes with no DNA or with a construct containing an irrelevant gene under the control of the H19 regulatory sequences. At defined timepoints, mice from each group are sacrificed and the bladders excised, fixed, and embedded in paraffin blocks using standard procedures. Alternate sections are processed for in situ hybridization using either the HI 9 probe, as described above, or a probe to the coding sequence of Pseudomonas toxin gene. Additionally, the size, number, and necrosis of tumors are compared between the control and experimental groups. Expression of Pseudomonas toxin is found to co-localize with expression of HI 9 in the bladder tumors from the experimental group of mice. Additionally, the bladder tumors in the experimental group of mice are reduced in size and necrotic as compared to the bladder tumors in the control group of mice.

. Example: Expression from the IGF-2 P3 and P4 Promoters in Tumor Cell Lines .1 Materials and Methods In this experiment, a variety of expression constructs containing the luciferase reporter gene placed under the control of one of the four different IGF-2 promoters were constructed and transferred into several different bladder cancer cell lines. The following human IGF-2 promoter/luciferase constructs were made: SUBSTITUTE SHEET (RULE 2©D The IGF-2 promoter sequences are described in Sussenbach et al, 1992, Growth Reg. 2:1-9, incorporated herein by reference. The luciferase reporter vector is commercially available from Promega, Madison, WI (catalog #E1641). .2 Results and Discussion The resulting expression plasmids were transfected into human bladder cancer ceil lines HT-1376, EJ28, T24P, 1 197 and UM-UC-3 as described above in Section 6. Luciferase activity was assayed using a commercial kit (Promega, Madison, WI, catalog #E1500). The results, shown in Figure 4A-4E, demonstrate that the IGF-2 P4 promoter directed the expression of the luciferase reporter gene in each bladder cancer cell line tested. In cell line 1 197, the IGF-2 P3 promoter also directed the expression of the luciferase reporter gene. In subsequent experiments, IGF-2 P3 and P4 promoters were shown to direct expression of luciferase gene expression in other tumor cell lines, including choriocarcinoma cells and rhabdomyosarcoma cells.

SUBSTITUTE SHEET (RULE 2%) 11. Example: H19 Promoter and IGF-2 Promoter Function with H19 Enhancer to Facilitate Expression of a Heterologous Geme 11.1 Materials and Methods Four luciferase reporter vectors, pGL3-Basic, pGL3 -Promoter, pGL3-Enhancer and pGL3-Control were obtained from Promega. These vectors were transfected into cultured cell lines using a number of different transfection reagents, including lipofetamine (Gibco/BRL), fugene (Boehringer), the Perfect Transfection Kit of 8 different lipids reagents (Invitrogen), TFX-10, TFX-20, transfast (Promega), and the calcium phosphate method (Gorman et ai, 1982, Mol. Cell. Biol. 2: 1044-1051). > The H19 promoter cloned into EcoRV site of pBluescript II SK (pbhl9p #1) is described in Section 6.1, supra. The H19 promoter was excised by cleavage with Sma I and Hind III, and the resulting 0.9 kb fragment was inserted into the Sma I-Hind III sites of pGL3-Basic vector to produce the Luc-pbhl9 construct.

The H19 promoter region from nt -819 to +14 was amplified by PCR from the pbhl9p #1 plasmid, using primers 5' -ATATGGTACCGACAACCCTCACCAAAG-3' (upstream, SEQ ID NO:8) and 5'-ATATAAGCTTCTTCTCCCTCACCCTGCTC-3, (downstream, SEQ ID NO:9). The resulting PCR product was digested with Kpnl and Hind III, and Iigated into the Kpnl-Hind ΙΠ sites of pGL3 -Basic vector, yielding the Luc-PBH19 construct. This PCR-generated H19 promoter was sequenced on both direction by automated dye terminator cycle sequencing (ABT Prism 377 DNA sequencer, Perkin Elmer). Figure 5 shows the nucleotide sequence of the H 19 promoter (SEQ ID :NO 2) generated by PCR.

The 5 kb HI 9 downstream enhancer described in Section 6, supra, was digested with DamH to yield two fragments of 4.1 kb and 0.9 kb at the 3' end. The Luc-PBH19-0.9EH19 and Luc-PBHl 9-4EH19 constructs were constructed SUBSTITUTE SHEET (RULE 2©) by the insertion of the 0.9 kb and 4.1 kb BamH I fragments of the HI 9 enhancer into the BamH I site of Luc-PBH19 plasmid. respectively. The enhancer sequences were positioned downstream of the H19 promoter/luciferase reporter gene.

The BamH I enhancer fragment of 0.9 kb was ligated into the BamH I site of pGL-Basic vector to produce the Luc-0.9EH19 vector. The H19 promoter of the pbhl9p #1 plasmid was excised by KpnI-BamH I, and ligated into the Kpnl-Bglll sites of the Luc-0.9EH19 construct, yielding the Luc-pbhl9-0.9EH19 expression construct which contained the promoter clones as described in Section 6, supra, and the 0.9 kb enhancer downstream of the H19 Luc reporter gene.

Expression vectors designated as Hup- 1. Hup-2, Hup-3, and Hup-4, containing the luciferase gene under the control of the human IGF-2 promoters PI, P2, P3 and P4, respectively, were constructed as described in Sussenbach et al, 1992, Growth Reg. 2:1-9. A 512 bp region of P4 was amplified by PCR from the Hup-4 construct using primers '- ACAGGTACCTCTAGAGTCGACCT-3 ' (upstream, SEQ ID NO: 10) and 5'-ATATAAGCTTGCTCCCATCCTGCA-3' (downstream, SEQ ID NO: 11). The resulting PCR product was digested with Kpnl-Hind ΙΠ, and ligated into the Kpnl-Hind ΓΠ sites of the reporter gene vector pGL3-Basic to produce the Luc-P4 reporter gene vector.

Expression vectors containing the IGF-2 P4 promoter and the HI enhancer were also prepared. A BarnHI enhancer fragment of 2 kb derived from the 4.1 kb fragment previously described was cloned into the BamH I site of the Luc-P4 construct, producing the Luc-P4-2EH 19 expression vector.

The 0.9 kb, 2 kb and 4.1 kb HI 9 enhancers were sequenced using automated DNA sequencing. The nucleotide sequence of the 0.9 kb enhancer is shown in Figure 6 (SEQ ID NO:3). The nucleotide sequence of the 2 kb SUBSTITUTE SHEET (RULE 2®) enhancer is shown in Figure 7A and 7B (SEQ ID NO:4). The nucleotide sequence of the 4.1 kb enhancer is shown in Figure 8A-8C (SEQ ID NO:5). 11.2 Results and Discussion When several transfection reagents were used to introduce four luciferase gene-containing vectors into cultured cell lines, calcium phosphate precipitation produced the highest transfection efficiency for most of the cell lines tested. Therefore, calcium precipitation was subsequently used to transfect various expression vectors. In addition, increased concentration of plasmid DNA did not inhibit transfection efficiency, even when they used at concentrations above the plateau.

The bladder cancer cell line 5637, the hepatocellular carcinoma (HCC.) cell line Huh7 and the kidney tumor cell line 293 T were each transfected with different constructs containing the luciferase reporter gene under the control of the HI 9 or IGF-2 P4 promoter in combination with the HI 9 enhancer.

Cells transfected with Luc-phl9 and Luc-PH19 containing the reporter gene and the HI 9 promoter exhibited increased gene expression over the background (Figure 9A-9C). The construct Luc-PH19 containing the PCR-generated promoter shows a higher activity than the Luc-phl9 in each cell line tested. Addition of the HI 9 0.9 kb enhancer fragment to the Luc-phl9 reporter vector (Luc-phl9-0.9EH19) further increased levels of expression from 2 to 4 folds in the cell lines 5637 and 293T, respectively.

The IGF-2 P4 promoter also increased the expression of luciferase in all cell lines over background. Addition of the 2 kb H19 enhancer fragment to the Luc-P4 expression vector enhanced the P4 promoter activity. The level of induction of luciferase activity by the 2 kb enhancer fragment ranged from two fold in 293T cell line to six fold in the Huh7 cell line, while the enhancer only marginally enhanced the promoter activity in 5673 cells.

Figure 10A-10E shows that expression of the construct Luc-phl9-4EH19) containing both the PCR-generated HI 9 promoter and 4.1 kb HI 9 enhancer fragment. The enhancer greatly increased the activity of the promoter by 3-28 folds in the cell lines except in the 5637 cell line. 12 DEPOSIT OF CLONE The following plasmid was deposited with the American Type Culture Collection (ATCC),Manassas, VA, under the terms of the Budapest Treaty on the International Recognition of the Deposit of Microorganisms for Purposes of Patent Procedure: ATCC Date Clone Access. No. of Deposit pH19EH19 209322 October 2, 1997 EQUIVALENTS The foregoing written specification is sufficient to enable one skilled in the art to practice the invention. Indeed, various modifications of the above-described means for carrying out the invention which are obvious to those skilled in the field of molecular biology, medicine or related fields are intended to be within the scope of the following claims.

All. publications cited herein are incorporated by reference in their entirety.

SUBSTITUTE SHEET (RULE 2§)

Claims (49)

- 40 - 135430/2

1. Use of a polynucleotide comprising a heterologous sequence encoding a cytotoxic gene product operably linked to a regulatory sequence, wherein the regulatory sequence is derived from HI 9, IFG-1, or IGF-2 P4 promoter regulatory elements, in the preparation of a pharmaceutical composition for use in a method of expressing a heterologous sequence in a tumor cell.

2. The use of claim 1, wherein the tumor cell is a bladder tumor cell.

3. The use of claim 2, wherein the bladder tumor cell is selected from the group consisting of Ht-1376, EJ28, T24P, 1197 and Um-UC-3.

4. The use of any one of claims 1 to 3, wherein the HI 9 regulatory sequences are the H19 promoter, the HI 9 enhancer, or both the HI 9 promoter and HI 9 enhancer.

5. The use of any one of claims 1 to 4, wherein the heterologous sequence is selected from the group consisting of the coding sequence for β-galactosidase, diphtheria toxin, Pseudomonas toxin, ricin, cholera toxin, retinoblastoma gene, p53, herpes simplex thymidine kinase, varicella zoster thymidine kinase, cytosine deaminase, nitroreductase, cytochrome p-450 2B1 , thymidine phosphorylase, purine nucleoside phosphorylase, alkaline phosphatase, carboxypeptidases A and G2, linamarase, β- lactamase and xanthine oxidase.

6. The use of any one of claims 1 to 4, wherein the heterologous sequence is an antisense sequence that specifically hybridizes to a sequence encoding a gene selected from the group consisting of cdk2, cdk8, cdk21 , cdc25A, cyclinDl , cyclinE, cyclinA, cdk4, oncogenic forms of p53, c-fos, c-jun, Kr-ras and Her2/neu.

7. The use of any one of claims 1 to 4, wherein the heterologous sequence encodes a ribozyme that specifically cleaves an RNA encoding a gene selected from the group consisting of cdk2, cdk8, cdk21, cdc25A, cyclinDl, cyclinE, cyclinA, cdk4, oncogenic forms of p53, c-fos, c-jun, Kr-ras and Her2/neu.

8. The use of any one of claims 1 to 7, wherein the tumor cell is in a subject.

9. The use of claim 8, wherein the subject has a tumor selected from the group consisting of bladder carcinoma, hepatocellular carcinoma, hepatoblastoma, rhabdomyosarcoma, ovarian carcinoma, cervical carcinoma, lung carcinoma, breast carcinoma, squamous cell carcinoma in head and neck, esophageal carcinoma, thyroid carcinoma, astrocytoma, ganglioblastoma and neuroblastoma. - 41 - 135430/3

10. The use of claim 4, wherein the HI 9 promoter comprises nucleotides 1 through 830 of SEQ ID NO. l .

11. The use of claim 4, wherein the HI 9 promoter comprises the sequence of SEQ ID:NO 2.

12. The use of claim 4, wherein the HI 9 enhancer comprises the sequence of the H19 enhancer cloned in plasmid pH19EH19 (ATCC deposit no. 209322).

13. The use of claim 4, wherein the HI 9 enhancer comprises the sequence of SEQ ID NO:3.

14. The use of claim 4, wherein the HI 9 enhancer comprises the sequence of SEQ ID NO-.4.

15. The use of claim 4, wherein the HI 9 enhancer comprises the sequence of SEQ ID NO:5.

16. The use of claim 4, wherein the HI 9 enhancer is placed 3' to the heterologous sequence.

17. A vector for expressing a sequence in a tumor cell, the vector comprising a polynucleotide comprising a regulatory sequence operably linked to a heterologous sequence encoding a cytoxic gene product, wherein the regulatory sequence is derived from HI 9, IGF-1, or IGF-2 P4 promoter regulatory elements.

18. The vector of claim 17, wherein the regulatory sequence is an HI 9 regulatory sequence.

19. The vector of claim 17, wherein the regulatory sequence is an IGF-2 P4 promoter.

20. The vector of claim 18, wherein the HI 9 regulatory sequences comprise the HI 9 promoter and the HI 9 enhancer.

21. The vector of any one of claims 17 to 20, wherein the heterologous sequence encodes a protein selected from the group consisting of β-galactosidase, diphtheria toxin, Pseudomonas toxin, ricin, cholera toxin, retinoblastoma gene, p53, herpes simplex thymidine kinase, varicella zoster thymidine kinase, cytosine deaminase, nitroreductase, cytochrome p-450 2B1, thymidine phosphorylase, purine nucleoside phosphorylase. alkaline phosphatase, carboxypeptidases A and G2, linamarase, β-lactamase and xanthine oxidase.

22. A host cell containing the vector of any one of claims 17 to 21. - 42 - 135430/2

23. Use of a polynucleotide encoding a cytotoxic or cytostatic gene product operably linked to a regulatory sequence, wherein the regulatory sequence is derived from HI 9, IGF-1, or IGF-2 P4 promoter regulatory elements, in the preparation of a pharmaceutical composition for use in a method of treating cancer in a subject .

24. The use of claim 23 wherein the regulatory sequence is an HI 9 regulatory sequence.

25. The use of claim 23 wherein the regulatory sequence is an IGF-2 P4 promoter.

26. The use of claim 23 wherein the regulatory sequence is an IGF-1 promoter.

27. The use of any one of claims 23 to 26, wherein the cytotoxic gene product is selected from the group consisting of diphtheria toxin, Pseudomonas toxin, ricin, cholera toxin, retinoblastoma gene and p53.

28. The use of claim 24, wherein the H19 regulatory sequences are the HI 9 promoter, the HI 9 enhancer, or both the HI 9 promoter and HI 9 enhancer.

29. The use of claim 28, wherein the HI 9 promoter comprises nucleotides 1 through 830 of SEQ ID NO: 1.

30. The use of claim 28, wherein the HI 9 promoter comprises the sequence of SEQ ID NO:2.

31. The use of claim 28, wherein the HI 9 enhancer comprises the sequence of the HI 9 enhancer cloned in plasmid pH19EH19 (ATCC deposit no. 209322).

32. The use of claim 28, wherein the H19 enhancer comprises the sequence of SEQ ID NO:3.

33. The use of claim 28, wherein the HI 9 enhancer comprises the sequence of SEQ ID NO:4.

34. The use of claim 28, wherein the HI 9 enhancer comprises the sequence of SEQ ID NO:5.

35. The use of claim 28, wherein the HI 9 enhancer is placed 3' to the heterologous sequence.

36. The use of any one of claims 23 to 35, wherein the cancer is selected from bladder carcinoma, hepatocellular carcinoma, hepatoblastoma, rhabdomyosarcoma, ovarian carcinoma, cervical carcinoma, lung carcinoma, breast carcinoma, squamous cell carcinoma in head and neck, esophageal carcinoma, thyroid carcinoma, astrocytoma, ganglioblastoma and neuroblastoma. - 43 - 135430/2

37. Use of a polynucleotide comprising an IGF-1 promoter operably linked to a heterologous sequence encoding a cytotoxic gene product in the preparation of a pharmaceutical composition for use in a method of expressing a heterologous sequence in a tumor cell .

38. A vector for expressing a heterologous sequence in a tumor cell, comprising a polynucleotide comprising an IGF-1 promoter operably linked to a heterologous sequence encoding a cytotoxic gene product.

39. Use of a polynucleotide comprising a heterologous sequence encoding a cytotoxic gene product operably linked to a regulatory sequence, wherein the regulatory sequence is derived from IGF-2 P3 in the preparation of a pharmaceutical composition for use in a method of expressing a heterologous sequence in a tumor cell selected from: bladder carcinoma, rhabdomyosarcoma, ovarian carcinoma, cervical carcinoma, lung carcinoma, breast carcinoma, squamous cell carcinoma of in the head and neck, esophageal carcinoma, thyroid carcinoma, astrocytoma, ganglioblastoma and neuroblastoma.

40. The use of claim 39, wherein the tumor cell is a bladder tumor cell.

41. The use of claim 40, wherein the bladder tumor cell is selected from the group consisting of Ht- 1376, EJ28, T24P, 1 197 and Um-UC-3.

42. The use of any one of claims 38 to 41, wherein the heterologous sequence is selected from the group consisting of the coding sequence for β-galactosidase, diphtheria toxin, Pseudomonas toxin, ricin, cholera toxin, retinoblastoma gene, p53, herpes simplex thymidine kinase, varicella zoster thymidine kinase, cytosine deaminase, nitroreductase, cytochrome p-450 2B1, thymidine phosphorylase, purine nucleoside phosphorylase, alkaline phosphatase, carboxypeptidases A and G2, linamarase, β-lactamase and xanthine oxidase.

43. The use of any one of claims 38 to 41 , wherein the heterologous sequence is an antisense sequence that specifically hybridizes to a sequence encoding a gene selected from the group consisting of cdk2, cdk8, cdk21, cdc25A, cyclinDl, cyclinE, cyclinA, cdk4, oncogenic forms of p53, c-fos, c-jun, Kr-ras and Her2/neu.

44. The use of any one of claims 38 to 41, wherein the heterologous sequence encodes a ribozyme that specifically cleaves an RNA encoding a gene selected from the group consisting of cdk2, cdk8, cdk21, cdc25A, cyclinDl, cyclinE, cyclinA, cdk4, oncogenic forms of p53, c-fos, c-jun, Kr-ras and Her2/neu. - 44 - 135430/2

45. The use of any one of claims 38 to 43, wherein the tumor cell is in a subject.

46. A use according to claim 1 , substantially as hereinbefore described with reference to any one of the accompanying Examples.

47. A vector according to claim 17, substantially as hereinbefore described with reference to anyone of the accompanying Examples.

48. A host cell containing the vector of claim 47.

49. A use according to claim 23, substantially as hereinbefore described with reference to any one of the accompanying Examples. For the Applicants, REINHOLD COHN AND PARTNERS SEQUENCE LISTING <110> Yissim Research Development Company of The Hebrew University of Jerusalem <120> METHODS AND COMPOSITIONS FOR INDUCING TUMO -SPECIFIC CYTOTOXICITY <130> 9457-0014-228 <140> PCT/IL98/00486 <141> 1998-10-04 <1S0> US 09/165,240 <151> 1998-10-01 <1S0> US 08/943,608 <1S1> 1997-10-03 <160> 11 <170> FastSEQ for Windows Version 3.0 <210 1 <211> 830 <212> DNA <213> Homo sapien <400> 1 ctgcagggcc ccaacaaccc tcaccaaagg ccaaggtggt gaccgacgga cccacagcgg ggtggctggg ggagtcgaaa ctcgccagtc tccactccac tcccaaccgt ggtgccccac gcgggcctgg gagagtctgt gaggccgccc accgcttgtc agtagagtgc gcccgcgagc cgtaagcaca gcccggcaac atgcggtctt cagacaggaa agtggccgcg aatgggaccg gggtgcccag cggctgtggg gactctgtcc tgcggaaacc gcggtgacga gcacaagctc ggtcaactgg atgggaatcg gcctgggggg ctggcaccgc gcccaccagg gggtttgcgg cacttccctc tgcccctcag caccccaccc ctactctcca ggaacgtgag gtctgagccg tgatggtggc aggaaggggc cctctgtgcc atccgagtcc ccagggaccc gcagctggcc cccagccatg, tgcaaagtat gtgcagggcg ctggcaggca- gggagcagca .ggcatggtgt cccctgaggg gagacagtgg tctgggaggg agaggtcctg gaccctgagg gaggtgatgg ggcaatgctc agccctgtct ccggatgcca aaggaggggt gcggggaggc cgtctttgga gaattccagg atgggtgctg ggtgagagag acgtgtgctg gaactgtcca gggcggaggt gggccctgcg ggggccctcg ggagggccct gctctgattg gccggcaggg caggggcggg aattctggcg ggccacccca gttagaaaaa gcccgggcta ggaccgagga <210> 2 <211> 833 <212> DNA <213> Homo sapien <400> 2 gacaaccctc accaagggcc aaggtggtga ccgacggacc cacagcgggg tggctggggg 60 agtcgaaact cgccagtctc cactccactc ccaaccgtgg tgccccacgc gggcctggga 120 gagtctgtga ggccgcccac cgcttgtcag tagagtgcgc ccgcgagccg taagcacagc 180 ccggcaacat gcggtcttca gacaggaaag tggccgcgaa tgggaccggg gtgcccagcg 240 -1- SUBST1TUTE SHEET (RULE .26) gccgcgggga ccccgccccg cggaaaccgc ggcgacgagc acaagcccgg ccaaccggac gggaaccggc ctggggggcc ggcaccgcgc ccaccagggg gCCCgcggca cctccctctg ccccccagca ccccaccccc actctccagg aacgtgagtt ctgagccgtg atggtggcag gaaggggccc tctgtgccat ccgagtcccc agggacccgc agctggcccc cagccatgtg caaagtatgt gcagggcgct ggcaggcagg gagcagcagg catggtgtcc cctgagggga gacagtggtc tgggagggag aagtcctggc cctgagggag gtgatggggc aatgctcagc cctgtctccg gatgccaaag gaggggtgcg gggaggccgt ctttggagaa ttccaggaeg ggtgctgggt gagagagacg tgtgctggaa ctgtccaggg cggaggtggg ccctgcgggg gccctcggga gggccctgct ctgattggcc ggcagggcag gggcgggaat tctgggcggg gccaccccag ttagaaaaag cccgggctag gaccgaggag cagggtgagg gag <210> 3 <211> 877 <212> DNA <213> Homo sapien <400> 3 caaggacatg gaatttcgga ccttctgtcc ccaccctctc tgctgagcct aggaacctct gagcagcagg aaggccttgg gtctagagcc tagaaatgga cccccacgtc cacctgccca gcctagaccc ccagcattga agggtggtca gacttcctgt gagaggaagc cactaagcgg gatggacacc atcgcccact ccacccggcc ctgcccagcc ctgcccagtc cagcccagtc cagcccagcc ctgcccttcc cagccctgcc cagcccagct catccctgcc ctacccagcc cagccctgtc ctgccctgcc cagcccagcc cagcccagcc ctgccctgcc ctgccctgcc cttcccagcc ctgaccttcc cagccctgcc cagcccagct catccctgcc ctacccagct cagccctgcc ctgccctgcc ctgccctgcc cagccctacc cagcccagcc ctgccctgcc ctgcccagct cagccctgcc caccccagcc cagcccagcc cagcatgcgt tctctggatg gtgagcacag gcttgacctt agaaagaggc tggcaacgag ggctgaggcc accaggccac tgggtgctca cgggtcagac aagcccagag cctgctcccc tgccacgggt cggggctgtc accgccagca tgctgtggat gtgcatggcc tcagggctgc tggctccagg ctgcccccgc cctggctccc gaggccaccc ctcttatgcc atgaaccctg tgccacaccc acctctgagc tgtccccgct cctgccgcct gcaccccctg agcagccccc tgtgtgtttc atgggagtct tagcaaggaa ggggagctcg aattcctgca gcccggg <210> 4 <211> 19S0 <212> DNA <213> Homo sapien <400> 4 ccgggtaccg agctcccagg aagataaatg atttcctccf ctctagaga gggggtggga... tctgagcact cagagccaag ggcgcagtgg gtccgggcgg gggccc.tcct _cggccctccc aacatggggg ccaggaggtc agcccctcaa cctggacccc ggctgggtct cagggaatgg tctcccccag tggcccagct tgcttgtgtt ttcagatggg tgtgcatggg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgatgcct gacaagcccc agagagccaa agacctgagt ggagatcttg tgacttctca aaagggggat tggaaggttc gagaaagagc tgtggtcagc cttgctctcc cttaaggctg tggtaaccac actaggcata gcataggcct gcgccccgtc cctccttccc tcctccgcgc ctctcctttc tctttctccc ccctctaccc cgctccctgg cctgctcctg gtgacaccgt tggccccctt ccagggctga gggaagccag cgggggcccc ttcctgaaag cccacctgca ggccggcttg ctgggaaggg gctgctctcg cagaggctcc cgcccgccct gcagccgttt cctggaagca gtcgctgtgg gtattctgtt ccttgtcagc actgtgcttg caaagaaagc agacactgtg ctccttgtcc ttagggagcc ccgctccatc acccaacacc tggctggaca caggcgggag gccgggtccg cggggagcgg cgcggggctg gggccggacc attaaacaca cacgggcgcc aggcactgca ggctcctcct cctcctcctg cccagcgcct ctgctcacag gcacgtgcca agcccctagg ccaggaggcc agcagtgggt gcagaacaag ctcctgggaa. gggggtgcag ggcggacccc cggggagaag ggctggcagg gctgtggggg acgctgaccg tgggccccac gttgcagaaa actggntgcc -2 SUBSTITUTE SHEET {RULE 2 ) tggctggaag a gggggaga tgccaagcct ccgaggcagc acgagcaggg tgcatggagg 1080 ccggggcgcg gggaggctgc actgcagcat gcaccccaaa gcccanaggg agtggagacc 1140 aggccctgga atcgagaagt agaaaggcgg cttggaggcc tcggaaccgg ctgacctcca 1200 acagagtggg tctccagcct ggctctgccc tgccgcaggt cccctcccct cattaccagg 12S0 cctagagcct ccagtcccgg tggcccccag cccgagggtg aacggcctca ccctgggtcg 1320 tgggacagag ggcacgttca tcaagagtgg ctcccaaggg acacgtggct gtttgcagtt 1380 cacaggaagc attcgagata aggagcttgt tttcccagtg ggcacggagc cagcaggggg 1440 gctgtggggc agcccagggt gcaaggccag gctgtggggc tgcagctgcc ttgggcccca 1S00 ctcccaggcc tttgcgggag gtgggaggcg ggaggcggca gctgcacagt ggccccaggc 1560 gaggctctca gccccagtcg ctctccgggt gggcagccca agagggtctg gctgagcctc 1S20 ccacatctgg gactccatca cccaacaact taattaaggc tgaatttcac gtgtcctgtg 1680 acttgggtag acaaagcccc tgtccaaagg ggcagccagc ctaaggcagt ggggacggcg 1740 tgggtggcgg gcgacggggg agatggacaa caggaccgag ggtgtgcggg cgatggggga 1800 gatggacaac aggaccgagg gtgtgcgggc gatgggggag atggacaaca ggaccgaggg 1860 tgtgcgggac acgcatgtca ctcatgcacg ccaatggggg gcgtgggagg ctggggagca 1920 gacagactgg gctgggctgg gcgggaagga cgggcagatg 1960 <210> 5 <211> 4085 , <212s DNA <213> Homo sapien <400> 5 ccgggtaccg agctcccagg aagataaatg atttcctcct ctctagagat gggggtggga 60 tctgagcact cagagccaag ggcgcagtgg gtccgggcgg gggccctcct cggccctccc 120 aacatggggg ccaggaggtc agcccctcaa cctggacccc ggctgggtct cagggaatgg 180 tctcccccag tggcccagct ■ tgcttgtgtt ttcagatggg tgtgcatggg tgtgtgtgtg 240 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgatgcct gacaagcccc agagagccaa 300 agacctgagt ggagatcttg tgacttctca aaagggggat tggaaggttc gagaaagagc 360 tgtggtcagc cttgctctcc cttaaggctg tggtaaccac actaggcata gcataggcct 420 gcgccccgtc cctccttccc tcctccgcgc ctctcctttc tctttctccc ccctctaccc 480 cgctccctgg cctgctcctg gtgacaccgt tggccccctt ccagggctga gggaagccag 540 cgggggcccc ttcctgaaag cccacctgca ggccggcttg ctgggaaggg gctgctctcg 600 cagaggctcc cgcccgccct gcagccgttt cctggaagca gtcgctgtgg gtattctgtt 660 ccttgtcagc actgtgcttg caaagaaagc agacactgtg ctccttgtcc ttagggagcc 720 ccgctccatc acccaacacc tggctggaca caggcgggag gccgggtccg cggggagcgg 780 cgcggggctg gggccggacc attaaacaca cacgggcgcc aggcactgca ggctcctcct 840 cctcctcctg cccagcgcct ctgctcacag gcacgtgcca agcccctagg ccaggaggcc 900 agcagtgggt gcagaacaag ctcctgggaa gggggtgcag ggcggacccc cggggagaag 960 ggctggcagg gctgtggggg acgctgaccg tgggccccac' gttgcagaaa actggntgcc 1020 tggctggaag atgggggaga tgccaagcct ctgaggcagc acgagcaggg tgcatggagg 1080 ccggggcgcg gggaggctgc actgcagcat gcaccccaaa gcccanaggg agtggagacc 1140 aggccctgga atcgagaagt agaaaggcgg cttggaggcc tcggaaccgg ctgacctcca 1200 acagagtggg gccggccctg gaggcaaaga ggtgcccggg gtccggccct gcctggggga 1260 gctatgtgtc atgggcaagc cacaggatat gtagcccgct ctgagcctat ggacccaggg 1320 cagggctgca aggcagggca ggggagacag cacgggggag caaggagcag agagggggcc 1380 tcaggctctc ccaggaggaa cattctcccg acaggaggaa gagacggccc aggggtgact 1440 gtggggagcc atggtggcag ctggggtcgt ggcagatggg agagaggctg gcgaggtgaa 1500 ggtgcagggg tcagggctct ggggcccaca tgcctgtggg agcaggcagg cccagggctc 1560 tccgccactc cccactcccg cttggctcat aggctgggcc caagggtggg gtgggatgag 1620 caggagatgg ggcccagggg gcaagcaggg ccccaaagac atttagaaaa accggtttat 1680 gcaggcagca ttcagagcag gcggcgtgcg tggcgggggc cctgggagca cagagaggca 1740 cacgtagggc ccccgagggg ctccccattg gccggcagtg acatcacccc tgtgtcaaca 1800 gtgatgtctg cagctccggc cagccagggt ttatggagcg agacccagcc cggcctgggc I860 cctcactccc caggcccaca cactagccca ctgttcaggg tccggggtgg cggcatggcc 1920 tgggggtcct ggqaccgctg ctcctctgcc caccctaact tcccggcatc gcggctgccc 1980 -3- SUBST3TUT1 SHEET (RULE 28) cctctgagcg tccccaacca gtaagtgtgg ggcccagcag gcctgccgtc ctcctcctct 2040 tcecctctag agagaaacgt ggaggtcctg gggctggggg cgctcatagc cctgtgacac 2100 aggtgcatgg ggtcaggggt cccagaatgg cccctgggaa ggacctcagc tgggccggcg 2160 gctctaggct tcaggggtct gtctgcacag gggntagccc ctcccagacc tctgtgaagc 2220 cagtacgggc ctcccctccc tgccccgtgc tctgtccggt gcttcctgga ctgcactgcg 2280 ggccactggt gagagggtgg acagggaagg gccgccgtgg tgcctgttcc tgcccacctg 2340 gctgtgtggt cccctccaag tagggacaac ccttctgagg gcttgggggc. accctggggt 2400 tgccagggcc tcccagagcc ctgtgagccc ctggggggtc tggcctgatg cccccctcca 2460 cgtccagggc cggctgtggc ccagaacccc agcttcccag caggccggtg tgcggtggtg 2520 acccaggaga ggcctcgcct ccactgaggg gccaccgacc tctgtcagac cacagagacc 2580 cccaaggagt ctgaaggctg gagacccggg gctgggacca ggtgggactt tcccacggag 2640 ccgtccccag gcccagctgg ggacacgtcc cccttctctc cagacacacc ctgcctgcca 2700 ccaggacaca ccggcctgtt gggggtctct tttaagtgct tgccactctg aggtgactgt 2760 ccctttccaa agaggtttct ggggcccagg tgggatgcgt cggcctgagc aggaggatct 2820 gggccgccag gggctgggga ctgtctcctg gggaaggaag cgcctgggag cgtgtgtgct 2880 gacccaggac catccaggga ggcccgtctg tggggcaagc gggaagggag cggctggaga 2940 ggcttggccg cccccgccct gcctcccatt ccttagctcc atgcctgtca acctctgtca 3000 cccagtgagt gatgtccagg ggccetggaa aggtcacagc atgtttgagc ggggtgagag 3060 agaggggaaa ggcgggggcg gggaaaagta cgtggaggaa gctttaggcc caaggaagga 3120 gacagggttc tgggagggag ggagccactg gggccgccgg gaaggtccct gcttgctgct 3180 gccacccaga accctcgcct cttagctagc ccccgcagcc ccagcctttc tggcntgtgg 3240 ccctctcccc catccccagg tgtcctgtgc aaccaggcct tggacccaaa ccctcctgcc 3300 ccctcctctc cctcctcacc ctcccaatgc agtggtctcc agcctggctc tgccctgccg 3360 caggtcccct cccctcatta ccaggcctag agcctccagt cccggtggcc cccagcccga 3420 gggtgaacgg cctcaccctg ggtcgtggga cagagggcac gttcatcaag agtggctccc 3480 aagggacacg tggctgtttg cagttcacag gaagcattcg agataaggag cttgttttcc 3540 cagtgggcac ggagccagca ggggggctgt ggggcagccc agggtgcaag gccaggctgt 3600 ggggctgcag ctgccttggg ccccactccc aggcctttgc gggaggtggg aggcgggagg 3660 cggcagctgc acagtggccc caggcgaggc tctcagcccc agtcgctctc cgggtgggca 3720 gcccaagagg ' g ctggctga gcctcccaca tctgggactc catcacccaa caacttaatt 3780 aaggctgaat ttcacgtgtc ctgtgacttg ggtagacaaa gcccctgtcc aaaggggcag 3840 ccagcctaag gcagtgggga cggcgtgggt ggcgggcgac gggggagatg gacaacagga 3900 ccgagggtgt gcgggcgatg ggggagatgg acaacaggac cgagggtgtg cgggcgatgg 3960 gggagatgga caacaggacc gagggtgtgc gggacacgca tgtcac cat gcacgccaat 4020 ggggggcgtg ggaggctggg gagcagacag actgggctgg gctgggcggg aaggacgggc 4080 agatg 4085 <210> 6 <211> 22 <212> DMA <213> Homo sapien <400> 6 cggttcccca cttccccagt tt 22 <210> 7 <211> 33 <212> DNA <213> Homo sapien <400> 7 cggaagtcga caaccctcac caaaggccaa ggt 33 <210> 8 <211> 27 <212s DNA -4- SUSSTSTUTE SHEET MULE 2<) <213> Homo sapien <400> 8 atatggtacc gacaaccctc accaaag <210> 9 <211> 29 <212> D A <213> Homo sapien 400> 9 atataagctt- cttctccctc accctgctc <210> 10 <211> 23 <212> DNA <213> Homo sapien <400> 10 acaggtacct ctagagtcga cct <210> 11 <211> 24 <212> DNA <213 > Homo sapien <4Q0> 11 atataagctt gctcccatcc tgca -5- SUiSTITUn SHEET (B LE 2S)