IE57904B1 - Process for the preparation of nucleoside alkyl-,aralkyl-and aryl-phosphonites and-phosphonates - Google Patents
Process for the preparation of nucleoside alkyl-,aralkyl-and aryl-phosphonites and-phosphonatesInfo
- Publication number
- IE57904B1 IE57904B1 IE2268/84A IE226884A IE57904B1 IE 57904 B1 IE57904 B1 IE 57904B1 IE 2268/84 A IE2268/84 A IE 2268/84A IE 226884 A IE226884 A IE 226884A IE 57904 B1 IE57904 B1 IE 57904B1
- Authority
- IE
- Ireland
- Prior art keywords
- general formula
- denotes
- see diagramm
- compound
- meanings given
- Prior art date
Links
- 238000000034 method Methods 0.000 title claims abstract description 21
- 239000002777 nucleoside Substances 0.000 title claims abstract description 16
- 230000008569 process Effects 0.000 title claims abstract description 15
- 150000003833 nucleoside derivatives Chemical class 0.000 title claims abstract description 11
- 238000002360 preparation method Methods 0.000 title claims abstract description 7
- 150000001875 compounds Chemical class 0.000 claims abstract description 43
- 239000000460 chlorine Chemical group 0.000 claims abstract description 13
- 125000000217 alkyl group Chemical group 0.000 claims abstract description 12
- ZAMOUSCENKQFHK-UHFFFAOYSA-N Chlorine atom Chemical group [Cl] ZAMOUSCENKQFHK-UHFFFAOYSA-N 0.000 claims abstract description 9
- BUGBHKTXTAQXES-UHFFFAOYSA-N Selenium Chemical compound [Se] BUGBHKTXTAQXES-UHFFFAOYSA-N 0.000 claims abstract description 9
- NINIDFKCEFEMDL-UHFFFAOYSA-N Sulfur Chemical compound [S] NINIDFKCEFEMDL-UHFFFAOYSA-N 0.000 claims abstract description 9
- 229910052801 chlorine Inorganic materials 0.000 claims abstract description 9
- 125000006239 protecting group Chemical group 0.000 claims abstract description 9
- 229910052711 selenium Inorganic materials 0.000 claims abstract description 9
- 239000011669 selenium Substances 0.000 claims abstract description 9
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 claims abstract description 8
- 125000004432 carbon atom Chemical group C* 0.000 claims abstract description 8
- 125000002887 hydroxy group Chemical group [H]O* 0.000 claims abstract description 8
- 229910052717 sulfur Inorganic materials 0.000 claims abstract description 8
- 239000011593 sulfur Substances 0.000 claims abstract description 8
- 239000003153 chemical reaction reagent Substances 0.000 claims abstract description 7
- 125000001797 benzyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])* 0.000 claims abstract description 6
- 239000005549 deoxyribonucleoside Substances 0.000 claims abstract description 6
- 125000001997 phenyl group Chemical group [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 claims abstract description 6
- 229920006395 saturated elastomer Polymers 0.000 claims abstract description 5
- WKBOTKDWSSQWDR-UHFFFAOYSA-N Bromine atom Chemical group [Br] WKBOTKDWSSQWDR-UHFFFAOYSA-N 0.000 claims abstract description 4
- 125000003545 alkoxy group Chemical group 0.000 claims abstract description 4
- QVGXLLKOCUKJST-UHFFFAOYSA-N atomic oxygen Chemical compound [O] QVGXLLKOCUKJST-UHFFFAOYSA-N 0.000 claims abstract description 4
- GDTBXPJZTBHREO-UHFFFAOYSA-N bromine Chemical group BrBr GDTBXPJZTBHREO-UHFFFAOYSA-N 0.000 claims abstract description 4
- 229910052794 bromium Inorganic materials 0.000 claims abstract description 4
- 125000000113 cyclohexyl group Chemical group [H]C1([H])C([H])([H])C([H])([H])C([H])(*)C([H])([H])C1([H])[H] 0.000 claims abstract description 4
- 239000011737 fluorine Substances 0.000 claims abstract description 4
- 229910052731 fluorine Inorganic materials 0.000 claims abstract description 4
- 125000001153 fluoro group Chemical group F* 0.000 claims abstract description 4
- 125000005842 heteroatom Chemical group 0.000 claims abstract description 4
- 125000000623 heterocyclic group Chemical group 0.000 claims abstract description 4
- 229910052757 nitrogen Inorganic materials 0.000 claims abstract description 4
- 229910052760 oxygen Inorganic materials 0.000 claims abstract description 4
- 239000001301 oxygen Substances 0.000 claims abstract description 4
- 125000002023 trifluoromethyl group Chemical group FC(F)(F)* 0.000 claims abstract description 4
- -1 di(p-anisoyl)phenylmethyl Chemical group 0.000 claims description 17
- 238000006243 chemical reaction Methods 0.000 claims description 16
- UEZVMMHDMIWARA-UHFFFAOYSA-M phosphonate Chemical compound [O-]P(=O)=O UEZVMMHDMIWARA-UHFFFAOYSA-M 0.000 claims description 5
- 230000003647 oxidation Effects 0.000 claims description 4
- 238000007254 oxidation reaction Methods 0.000 claims description 4
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 claims description 3
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 claims description 2
- ABLZXFCXXLZCGV-UHFFFAOYSA-N Phosphorous acid Chemical class OP(O)=O ABLZXFCXXLZCGV-UHFFFAOYSA-N 0.000 abstract description 7
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 11
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 10
- WYURNTSHIVDZCO-UHFFFAOYSA-N Tetrahydrofuran Chemical compound C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 description 10
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 9
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 6
- OFBQJSOFQDEBGM-UHFFFAOYSA-N Pentane Chemical compound CCCCC OFBQJSOFQDEBGM-UHFFFAOYSA-N 0.000 description 6
- 239000000047 product Substances 0.000 description 5
- 229910052799 carbon Inorganic materials 0.000 description 4
- 239000000543 intermediate Substances 0.000 description 4
- 239000002798 polar solvent Substances 0.000 description 4
- 238000003756 stirring Methods 0.000 description 4
- 238000005160 1H NMR spectroscopy Methods 0.000 description 3
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 3
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 3
- 238000005481 NMR spectroscopy Methods 0.000 description 3
- PMZURENOXWZQFD-UHFFFAOYSA-L Sodium Sulfate Chemical compound [Na+].[Na+].[O-]S([O-])(=O)=O PMZURENOXWZQFD-UHFFFAOYSA-L 0.000 description 3
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical class [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 3
- ZMANZCXQSJIPKH-UHFFFAOYSA-N Triethylamine Chemical compound CCN(CC)CC ZMANZCXQSJIPKH-UHFFFAOYSA-N 0.000 description 3
- 238000004458 analytical method Methods 0.000 description 3
- 230000015572 biosynthetic process Effects 0.000 description 3
- 239000000203 mixture Substances 0.000 description 3
- 125000003835 nucleoside group Chemical group 0.000 description 3
- 239000002773 nucleotide Substances 0.000 description 3
- 239000012074 organic phase Substances 0.000 description 3
- XRBCRPZXSCBRTK-UHFFFAOYSA-N phosphonous acid Chemical compound OPO XRBCRPZXSCBRTK-UHFFFAOYSA-N 0.000 description 3
- 239000000843 powder Substances 0.000 description 3
- 239000002244 precipitate Substances 0.000 description 3
- 150000003254 radicals Chemical class 0.000 description 3
- 125000000467 secondary amino group Chemical class [H]N([*:1])[*:2] 0.000 description 3
- 239000002904 solvent Substances 0.000 description 3
- 239000007858 starting material Substances 0.000 description 3
- 238000003786 synthesis reaction Methods 0.000 description 3
- CIHOLLKRGTVIJN-UHFFFAOYSA-N tert‐butyl hydroperoxide Chemical compound CC(C)(C)OO CIHOLLKRGTVIJN-UHFFFAOYSA-N 0.000 description 3
- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 3
- KDCGOANMDULRCW-UHFFFAOYSA-N 7H-purine Chemical compound N1=CNC2=NC=NC2=C1 KDCGOANMDULRCW-UHFFFAOYSA-N 0.000 description 2
- 108020004414 DNA Proteins 0.000 description 2
- 102000053602 DNA Human genes 0.000 description 2
- OAICVXFJPJFONN-UHFFFAOYSA-N Phosphorus Chemical compound [P] OAICVXFJPJFONN-UHFFFAOYSA-N 0.000 description 2
- KAESVJOAVNADME-UHFFFAOYSA-N Pyrrole Chemical compound C=1C=CNC=1 KAESVJOAVNADME-UHFFFAOYSA-N 0.000 description 2
- 239000002253 acid Substances 0.000 description 2
- 150000001412 amines Chemical class 0.000 description 2
- QRUDEWIWKLJBPS-UHFFFAOYSA-N benzotriazole Chemical compound C1=CC=C2N[N][N]C2=C1 QRUDEWIWKLJBPS-UHFFFAOYSA-N 0.000 description 2
- 239000003795 chemical substances by application Substances 0.000 description 2
- 239000012043 crude product Substances 0.000 description 2
- WFPZPJSADLPSON-UHFFFAOYSA-N dinitrogen tetraoxide Chemical compound [O-][N+](=O)[N+]([O-])=O WFPZPJSADLPSON-UHFFFAOYSA-N 0.000 description 2
- 238000000605 extraction Methods 0.000 description 2
- 238000004128 high performance liquid chromatography Methods 0.000 description 2
- YACKEPLHDIMKIO-UHFFFAOYSA-N methylphosphonic acid Chemical class CP(O)(O)=O YACKEPLHDIMKIO-UHFFFAOYSA-N 0.000 description 2
- SCLFRABIDYGTAZ-UHFFFAOYSA-N methylphosphonic acid dichloride Chemical compound CP(Cl)(Cl)=O SCLFRABIDYGTAZ-UHFFFAOYSA-N 0.000 description 2
- 125000003729 nucleotide group Chemical group 0.000 description 2
- 238000001556 precipitation Methods 0.000 description 2
- 230000009257 reactivity Effects 0.000 description 2
- 229910052938 sodium sulfate Inorganic materials 0.000 description 2
- 235000011152 sodium sulphate Nutrition 0.000 description 2
- 239000000126 substance Substances 0.000 description 2
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 2
- YQTCQNIPQMJNTI-UHFFFAOYSA-N 2,2-dimethylpropan-1-one Chemical group CC(C)(C)[C]=O YQTCQNIPQMJNTI-UHFFFAOYSA-N 0.000 description 1
- LKPFWCPZERQLFI-UHFFFAOYSA-N 2,4,6-trimethylpyridine;hydrochloride Chemical compound Cl.CC1=CC(C)=NC(C)=C1 LKPFWCPZERQLFI-UHFFFAOYSA-N 0.000 description 1
- 238000004679 31P NMR spectroscopy Methods 0.000 description 1
- VEXZGXHMUGYJMC-UHFFFAOYSA-M Chloride anion Chemical compound [Cl-] VEXZGXHMUGYJMC-UHFFFAOYSA-M 0.000 description 1
- 102100039845 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8 Human genes 0.000 description 1
- 101710112841 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8 Proteins 0.000 description 1
- 238000005654 Michaelis-Arbuzov synthesis reaction Methods 0.000 description 1
- JGFZNNIVVJXRND-UHFFFAOYSA-N N,N-Diisopropylethylamine (DIPEA) Chemical compound CCN(C(C)C)C(C)C JGFZNNIVVJXRND-UHFFFAOYSA-N 0.000 description 1
- 101710163270 Nuclease Proteins 0.000 description 1
- 229910019142 PO4 Inorganic materials 0.000 description 1
- 125000002777 acetyl group Chemical group [H]C([H])([H])C(*)=O 0.000 description 1
- 230000004913 activation Effects 0.000 description 1
- 125000002252 acyl group Chemical group 0.000 description 1
- 239000012964 benzotriazole Substances 0.000 description 1
- 125000003236 benzoyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C(*)=O 0.000 description 1
- 230000003197 catalytic effect Effects 0.000 description 1
- 238000012512 characterization method Methods 0.000 description 1
- 238000004587 chromatography analysis Methods 0.000 description 1
- 238000001816 cooling Methods 0.000 description 1
- 239000013256 coordination polymer Substances 0.000 description 1
- 238000000354 decomposition reaction Methods 0.000 description 1
- 239000005547 deoxyribonucleotide Substances 0.000 description 1
- 125000002637 deoxyribonucleotide group Chemical group 0.000 description 1
- 238000001514 detection method Methods 0.000 description 1
- CDPKWOKGVUHZFR-UHFFFAOYSA-N dichloro(methyl)phosphane Chemical compound CP(Cl)Cl CDPKWOKGVUHZFR-UHFFFAOYSA-N 0.000 description 1
- LWNLXVXSCCLRRZ-UHFFFAOYSA-N dichlorophosphane Chemical compound ClPCl LWNLXVXSCCLRRZ-UHFFFAOYSA-N 0.000 description 1
- 125000002147 dimethylamino group Chemical group [H]C([H])([H])N(*)C([H])([H])[H] 0.000 description 1
- 238000004821 distillation Methods 0.000 description 1
- 238000001035 drying Methods 0.000 description 1
- 230000000694 effects Effects 0.000 description 1
- 150000002148 esters Chemical class 0.000 description 1
- 230000007717 exclusion Effects 0.000 description 1
- 239000000706 filtrate Substances 0.000 description 1
- 239000006260 foam Substances 0.000 description 1
- 239000007789 gas Substances 0.000 description 1
- 229910052736 halogen Inorganic materials 0.000 description 1
- 150000002367 halogens Chemical class 0.000 description 1
- 230000003993 interaction Effects 0.000 description 1
- 238000011835 investigation Methods 0.000 description 1
- 229910052740 iodine Inorganic materials 0.000 description 1
- INQOMBQAUSQDDS-UHFFFAOYSA-N iodomethane Chemical compound IC INQOMBQAUSQDDS-UHFFFAOYSA-N 0.000 description 1
- 239000007788 liquid Substances 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 230000011987 methylation Effects 0.000 description 1
- 238000007069 methylation reaction Methods 0.000 description 1
- 239000012299 nitrogen atmosphere Substances 0.000 description 1
- 239000012454 non-polar solvent Substances 0.000 description 1
- 231100000065 noncytotoxic Toxicity 0.000 description 1
- 230000002020 noncytotoxic effect Effects 0.000 description 1
- 238000002515 oligonucleotide synthesis Methods 0.000 description 1
- 239000007800 oxidant agent Substances 0.000 description 1
- 239000003208 petroleum Substances 0.000 description 1
- 235000021317 phosphate Nutrition 0.000 description 1
- ACVYVLVWPXVTIT-UHFFFAOYSA-N phosphinic acid Chemical compound O[PH2]=O ACVYVLVWPXVTIT-UHFFFAOYSA-N 0.000 description 1
- 150000003008 phosphonic acid esters Chemical class 0.000 description 1
- 150000003013 phosphoric acid derivatives Chemical class 0.000 description 1
- 229910052698 phosphorus Inorganic materials 0.000 description 1
- 239000011574 phosphorus Substances 0.000 description 1
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 description 1
- 230000001681 protective effect Effects 0.000 description 1
- 238000000746 purification Methods 0.000 description 1
- 239000011541 reaction mixture Substances 0.000 description 1
- 230000008707 rearrangement Effects 0.000 description 1
- 238000010898 silica gel chromatography Methods 0.000 description 1
- 125000003808 silyl group Chemical group [H][Si]([H])([H])[*] 0.000 description 1
- 239000011780 sodium chloride Substances 0.000 description 1
- 238000004611 spectroscopical analysis Methods 0.000 description 1
- 238000001228 spectrum Methods 0.000 description 1
- 150000003512 tertiary amines Chemical class 0.000 description 1
- 150000003536 tetrazoles Chemical class 0.000 description 1
- 238000005809 transesterification reaction Methods 0.000 description 1
- 229940045145 uridine Drugs 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
- C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
- C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
- C07F9/00—Compounds containing elements of Groups 5 or 15 of the Periodic Table
- C07F9/02—Phosphorus compounds
- C07F9/28—Phosphorus compounds with one or more P—C bonds
- C07F9/48—Phosphonous acids [RP(OH)2] including [RHP(=O)(OH)]; Thiophosphonous acids including [RP(SH)2], [RHP(=S)(SH)]; Derivatives thereof
- C07F9/4883—Amides or esteramides thereof, e.g. RP(NR'2)2 or RP(XR')(NR''2) (X = O, S)
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02P—CLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
- Y02P20/00—Technologies relating to chemical industry
- Y02P20/50—Improvements relating to the production of bulk chemicals
- Y02P20/55—Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Biochemistry (AREA)
- Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Life Sciences & Earth Sciences (AREA)
- General Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- Genetics & Genomics (AREA)
- Saccharide Compounds (AREA)
- Solid-Sorbent Or Filter-Aiding Compositions (AREA)
- Silicon Polymers (AREA)
- Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
- Treatment Of Liquids With Adsorbents In General (AREA)
Abstract
1. Claims for the contracting states : BE, CH, LI, DE, FR, GB, IT, LU, NL, SE A process for the preparation of deoxyribonucleoside phosphonates of the general formula I see diagramm : EP0136543,P14,F1 in which T denotes a protecting group for a primary hydroxyl group, B denotes a nucleoside base radical in which any exoamino group present is protected, G denotes a protecting group for a secondary hydroxyl group, Z denotes oxygen, sulfur or selenium and R denotes alkyl having up to 8 C atoms, cyclohexyl, benzyl, or phenyl which is optionally substituted by fluorine, chlorine, bromine, lower alkyl, lower alkoxy or trifluoromethyl, characterized in that a difunctional phosphonylating reagent of the general formula II see diagramm : EP0136543,P14,F2 in which X denotes chlorine or Y and Y denotes a group of the formula see diagramm : EP0136543,P14,F3 R**1 and R**2 representing identical or different alkyl or cycloalkyl radicals having up to 8 C atoms, or phenyl radicals, or R**1 and R**2 , together with the nitrogen, representing a saturated or unsaturated heterocyclic ring which can contain further hetero atoms, being reacted with a nucleoside of the general formula III see diagramm : EP0136543,P14,F4 in which T and B have the meanings given above, the resulting compound of the general formula IV see diagramm : EP0136543,P14,F5 being reacted with a compound of the general formula V see diagramm : EP0136543,P15,F1 in which B and G have the meanings given above, and the resulting compounds of the general formula VI see diagramm : EP0136543,P15,F2 in which T, R, B and G have the meanings given above, being oxidatively converted to compound of the general formula I. 1. Claims for the contracting state AT A process for the preparation of deoxyribonucleoside phosphonates of the general formula I see diagramm : EP0136543,P15,F3 in which T denotes a protecting group for a primary hydroxyl group, B denotes a nucleoside base radical in which any exoamino group present is protected, G denotes a protecting group for a secondary hydroxyl group, Z denotes oxygen, sulfur or selenium and R denotes alkyl having up to 8 C atoms, cyclohexyl, benzyl, or phenyl which is optionally substituted by fluorine, chlorine, bromine, lower alkyl, lower alkoxy or trifluoromethyl, characterized in that a difunctional phosphonylating reagent of the general formula II see diagramm : EP0136543,P16,F1 in which X denotes chlorine or Y and Y denotes a group of the formula see diagramm : EP0136543,P16,F2 R**1 and R**2 representing identical or different alkyl or cycloalkyl radicals having up to 8 C atoms, or phenyl radicals, or R**1 and R**2 , together with the nitrogen, representing a saturated or unsaturated heterocyclic ring which can contain further hetero atoms, being reacted with a nucleoside of the general formula III see diagramm : EP0136543,P16,F3 in which T and B have the meanings given above, the resulting compound of the general formula IV see diagramm : EP0136543,P16,F4 being reacted with a compound of the general formula V see diagramm : EP0136543,P16,F5 in which B and G have the meanings given above, and the resulting compounds of the general formula VI see diagramm : EP0136543,P17,F1 in which T, R, B and G have the meanings given above, being oxidatively converted to compound of the general formula I.
Description
This invention relates to a process for the preparation of nucleoside alkyl-, aralkyl- and ary 1-phosphonites and -phosphonates.
Non-ionic analogs of deoxyribonucleic acids (DNA) are important for the investigation of DNA-DNA and DNAprotein interactions. Of particular interest are phosphonic acid esters of deoxyribonucleotides as a result of their chemical stability and on the basis of their capability to enter into cells and their high resistance to cell 1.0 nucleases. Hitherto, four different strategies have been described for the synthesis of methyl phosphonate analogs of nucleotides: 1. Ogilvie et al. (M.J. Nemer and K.K. Ogilvie, Tetrahedron Lett. 21 , Page 4149 (1980)) prepared a completely protected uridy 1-3’,51-uridine methyLphosphonate by Michaelis-Arbuzov rearrangement of the corresponding phosphite intermediates. This reaction (methyl iodide, hours at 50°C) might not be generally applicable as a result of its drastic conditions, because, for example, methylation of the purine bases is to be expected. 2. Ts’o et al. (P.S. Miller, J. Yano, E. Yano, C. Caroll, K. Jayaraman and P.O.P. Ts'o, Biochemistry 18, 5134 (1979); Proc. Natl. Acad. Sci. USA 78, 1537 (1 981 ); P.S. Miller, N. Drean, S.M. Pulford and K.B. McFarland, 25 J. Biol. Chem. 225, 9659 (1 980)) developed a synthesis strategy which is analogous to the phosphotriester method in oligonucleotide synthesis. Here, a protected nucleotide 3'-O-methylphosphonic acid /?-cyanoethyI ester is used as the most important intermediate. This method has the known advantages and disadvantages of the phosphotriester method, the low reactivity of the phosphor us (V) compound being mentioned in particular as a disadvantage. 3. Agarwal et al. (K.L. Agarwal and F. Riftina, Nucl.
Acid Res. 6_, 3009 (1979)) used methylphosphonic acid dichloride as a di functional phosphonylating agent. In the second step, the chloride has to be activated by means of tetrazole. The crude product obtained can only be purified by efficient chromatography. 4. J. Engels and A. Jager, Angew. Chem. Suppl. 1982, 2010, and N.D. Sinha, V. Grossbruchhaus and H. Ko'ster, Tetrahedron Lett. 24 , 887 (1 983) used methy Idichlorophosphane as the starting material. The latter authors synthesized the nucleotide methylphosphonates on a polymeric support. The products obtained are yet to be characterized.
Whereas the reactivity of the second halogen of methylphosphonic acid di chloride is generally too low and additional activation is necessary, the activity in the case of phosphinic acid dichlorides is if anything too high. Thus, handling difficulties arise (extremely anhydrous medium) and, in addition, the symmetrical phosphonous acid ester is unavoidably formed. 9y contrast, the invention relates to a process for the preparation of deoxyribonucleoside phosphonates of the general formula I τ-τ0' (I) Ζ = Ρ - R Ηςί G-0 in which Τ denotes a protecting group for a primary hydroxyl group, preferably triphenyImethyI (= Tr), p-anisoyldiphenylmethyl or di(p-anisoy I) phenyImethy I, B denotes a nucleoside base radical in which any exoamino group present is protected, preferably 1 thyminyl, 1 -(N-4-benzoyIcytosinyI), 9-(N-6-benzoyladeninyl) or 9-(N-2-isobutyroyI guaninyI), denotes a protecting group for a secondary hydroxyl group, Z denotes oxygen, sulfur or selenium and R denotes alkyl having up to 8 C atoms, cyclohexyl, benzyl,or phenyl optionally substituted by fluorine, chlorine, bromine, lower alkyl, lower alkoxy or trifluoromethyl, and preferably denotes methyl, ethyl, phenyl or benzyl, especially methyl, •wherein a difunctional phosphonylating reagent of the general formula II X R - P< Y (II) wherein X denotes chlorine or Y and Y denotes a group of he formula ? R and R representing identical or different alkyl or cycloalkyl radicals having up to 8 C atoms, or phenyl radicals, or R and R , together with the nitrogen, representing a saturated or unsaturated heterocyclic ring which can contain further heteroatoms, is reacted with a nucleoside of the general formula III B T—O—(III) H-0 wherein T and 0 have the meanings given above, preferably 10 at -80 to +100°C, in particular at -20 to 0°C, the resulting compound of the general formula IV T-0-,/ °\J W (IV) is reacted with a compound of the general formula V B H-C-, (V) G~O wherein B and G have the meanings given above, preferably at -20 to +100°C, in particular at room temperature, and the resulting compound of the general formula VI (VI) G- O wherein T, R, B and G have the meanings given above, is oxidatively converted to compounds of the general formula I, preferably at -80 to +100°C, in particular at -20°C to room temperature.
The compounds of the general formula I in which 2 denotes sulfur or selenium are new. The intermediates of the general formula IV are also new and form a subject of the i nverit i on .
In principle, the radical R in the difunctional phosphcnylating reagent of the general formula II can be any non-cytotoxic organic radical which is inert towards the compounds of the general formulae II to VI and which does not hinder the reactions.
Examples of possible groups of the general formula are: dimethylamino, diethylamino, di isopropylami no, methylethylamino, methylpropylamino, methylhexylamino, methyIcyc lohexyI amino, methy I benzyI amino, morpholino, pyrrolidino, piperidino, methyI aniIino, dipheny I ami no, imidazolo, triazolo, benzotriazolo and tetrazolo.
The starting materials of the general formula II in which X denotes chlorine can be obtained by reacting the corresponding dichlorophosphane, preferably methy Id ichlorophosphane, with a secondary amine of the general formula VII H-NR1R2 (VII) in which R and R have the meanings given above.
Correspondingly, compounds of the general formula II in which X denotes a group of the formula Y are accessible by further reaction with the same secondary amine or a different secondary amine of the general formula VII. The compounds of the formula II can be purified by vacuum distiIlation.
The reaction of the phosphonylating reagent of the general formula II with a suitably protected nucleoside of the general formula III is carried out in a moderately polar solvent, preferably chloroform, with the exclusion of moisture. Tertiary amines, preferably ethyldiisopropylIt amine (Hunig's base), can be used as auxiliary bases for this reaction. Working-up is carried out by aqueous extraction and precipitation of the products of the general formula IV with a non-polar solvent such as petroleum ether or pentane. The phosphonous acid ester-amides of the general formula IV obtained in this way precipitate as colorless powders and can be characterized by spectroscopic data such as ^H-NMR, ^^P-NMR or UV and elementary analysis. Furthermore, they can also be converted, by direct oxidation, to the phosphonic acid ester-amides of the general formula VIII (VIII) O T, Β, Ζ, R and Υ having the meanings given above, which can then be isolated and characterized.
Remarkably, no symmetrical dinucleoside 3’,3’phosphonite is formed within the limit of detection.
As shown by ^^P-NHR, the compounds of the general formula I are stable for at least 1 month in powder form, when stored dry and at a maximum of -20°C. This great stability of the phosphonous acid ester-amides is astonishing and emphasizes the value of this method. Its universal applicability in the synthesis of phosphonic acid diesters of nucleosides is shown by the reaction with suitably 3'-protected nucleosides: In this reaction, the 5‘-protected nucleoside phosphonites of the general formula IV are dissolved in a moderately polar solvent, preferably acetonitrile, chloroform or tetrahydrofuran, and mixed with the nucleoside of the general formula V (protected in the 3’-position). Suitable protecting groups G in the compounds of the general formula V are acyl groups such as benzoyl, acetyl, pivaloyl or levulonyl, or silyl groups such as t-butyldimethy Isi ly I. The reaction is catalyzed by an acid, preferably an azole or amine hydrochloride. Benzotriazole is particularly suitable. It is remarkable that HPLC analysis of the product shows no symmetrical 5’,5’-isomer and only traces of the 3 *,3 '-isomeric phosphonate.
The labile intermediate, namely the phosphonous acid triester of the general formula VI, is oxidized directly to the phosphonate of the general formula I. In addition to the oxidizing agents usually employed for this purpose, such as di nitrogen tetroxide or iodine, peroxides, in particular anhydrous t-butyl hydroperoxide, have proved valuable. The reaction is preferably carried out in a moderately polar solvent, particular preference being afforded to acetonitrite or chloroform. Particular consideration should be given to the known acid-catalyzed transesterification of the diacylalkylphosphonites (F.W. Hoffmann, R.G. Roth and T.C. Simmons, J. Amer. Chem. Soc. 80, 5937 - 40 (1958)).
The compounds (some of which are already known) 1 are characterized by means of P-NMR and H-NMR and also chromatographic comparisons with authentic material.
The compounds of the general formula I in which Z denotes sulfur or selenium are prepared by direct reaction of the compounds of the general formula VI with elemental sulfur or selenium. Stirring with the stoichiometric quantity of sulfur or selenium, in a polar solvent such as tetrahydrofuran, leads to good yields of the corresponding thiophosphonates or seIenophosphonates of the general formula I. Characterization is carried out by means of 31 p-nhr and H-NMR as well as elementary analysis.
Because of the presence of a center of asymmetry in the nucleoside moiety and the production of another on the phosphorus, the phosphates of the general formula I exist as mixtures of diastereomers (see Table 6, isomers and 2) .
The isomer ratio, which is close to the statistical ratio of 1:1, is only very slightly influenced by a variation in the parameters such as the solvent, the tern10 perature and the sequence of addition.
The examples which follow describe the invention in greater detail: Example 1: Starting material H3C--P CN (CHj) 2 J2 In a 1000 ml three-necked flask fitted with a dropping funnel and a mechanical stirrer, 125 ml (1.9 mol) of dimethyiamine are introduced into 400 in I of anhydrous diethyl ether and reacted, over a period of 60 minutes, with a solution of 60 ml (0.40 mol) of methyldichlorophosphane in 200 ml of anhydrous ether, uhile cooling with ice. After stirring for 2 hours at room temperature and for 1 hour at 50°C, the precipitate is filtered off under a protective gas and rinsed twice with 100 ml of ether and the filtrate is concentrated at about 0.1 bar. The remaining residue is rapidly distilled over at 0.5 bar/124°C. Precision distillation with a Vigreux column (50 cm) at 64-65°C/65 mbar gives 36.6 g (66% of theory) of a colorless liquid.
Analysis: Cl^"^ < 0.2% 31P-NHR (THF) 1H-NMR (CDCI-) = 87 ppm $ = 1.23 ppm (d, 7Hz, P-Clij) $ = 2.66 ppm (d, 7Hz, N(CH3)2) Example 2: The S'-tritylnucleosides III (1 mmol) are dissolved in 6 ml of anhydrous chloroform under an inert nitrogen atmosphere and H3 CP CN (C ) 2^2 (2 mrnol-) i s added. The reaction is complete after 12 hours at room temperature (stirring) or after only 2 hours if catalytic quantities (0.1 mmol) of collidine hydrochloride are added.
The solution is then transferred with 100 ml of methylene chloride to a 250 ml separating funnel and extracted twice by shaking with 50 ml of saturated sodium chloride solution (containing 0.1 ml of triethylamine).
The organic phase is dried over anhydrous sodium sulfate and concentrated to a foam. This is stirred for 2 hours with 50 ml of pentane. The residue is filtered off and dissolved in 2 ml of diethyl ether and the solution is slowly added dropwise to 50 ml of thoroughly stirred pentane. The fine precipitate is filtered off and dried to give an 85-95% yield of the compound of the general formula IV (Tables 2 and 3) .
The compounds can be identified directly by 31 P nuclear magnetic resonance spectroscopy or, after oxidation with t-butyl hydroperoxide, as phosphonic acid este:—amides of the general formula VIII (Tables 4 and 5).
In the spectrum, these substances show up to 3% of hydrolyzed product (nucleoside methylphosphinate), but no detectable quantity of symmetrical dinucleoside 31,31-phosphonite. This demonstrates the superiority of the method compared with former methods, which always yielded about 5-10% of these products. When stored as dry powders at -20°C, no decomposition can be observed within a month.
The following reagents were also employed analogously: H-C - Ρ'' 3 \ N /CH(CH3)2_/2 Example 3; The 51-1rity I nuc I eoside III (1.00 mmol) and 1.71 ml (10 mmol) of Ν,N,N-ethyIdiisop ropy I amine are introduced into 6 ml of THF, and 2.,00 mmol of phosphonyla ting agent II are then slowly added dropwise. After stirring at room temperature overnight, the reaction solution is added dropwise to ice-cold water (50 ml, saturated with NaCl). After extraction with twice 20 ml of methylene chloride, the organic phase is dried with sodium sulfate and the solvent is removed in vacuo.
Further purification is carried out by precipitation as above (Tables 2 and 3).
Example 4; 3 '-0-3e nzoy 11 Ii yrn i d i ne (0.20 mmol) and 1-H-benzotriazole (0.80 mmol) are dried in a round-bottomed flask and then dissolved in 1.0 ml of dry acetonitrile. The reaction is complete within one minute, a very air-labile and acid-labile phosphonite VI being formed; this is converted directly to the phosphonates I, with 80-90% yield, by oxidation with anhydrous t-butyl hydroperoxide (0.25 mmol) (according to H. Langhals, E. Fritz and J. Mergelsberg, Chem. Ber. 113, 3662 (1980)) dissolved in acetonitrile or tetrahydrofuran.
Alternatively, 30 mg (0.95 mmol) of sulfur are added to 0.7 nmol of VI at -20°C and the mixture is stirred overnight at room temperature. The reaction is generally already complete after a few hours. 20 ml of chloroform are then added and the organic phase is extracted three times by shaking with water. After drying over sodium sulfate and removal of the solvent, a crude product is obtained which is purified by silica gel chromatography to give the compound I in 80-90% yield (Table 6).
A11ernativeIyz 118 mg (1.5 mmol) of black selenium are added to 0.7 mmol of VI and the mixture is stirred overnight. After working-up (as above), the compound I. is obtained in 60% yield (Table 6).
HPLC analysis of the reaction mixture (in the case where Z ~ 0 by comparison with the authentic reference, P.O.P. T’so et al., Biochemistry 18, 5134 (1979)) showed about 1% of the 3*,3'-phosphonates and no 5',5'-isomer.
(/) C o 4-» o £_ Q.
TABLE 1: Compounds (II) H,C-PXY ro x I CL « O.
CO u TO _Q ·*>.
O o CC*-x «*: to 2 χ-χ I CL ro E Q.
Q. >- z~\ N X ro • oo O ft (XJ -D • x-^ ro o TO X % X u • r— o +J •r· TO +J E TO O E £. O TO L 00 TO X x— X • X Ο Γ- X • O 1 LO Ο Τ- t" Ι >4- x LA X • E • E r- Γ- ’χ-' N X z-\ N X ro <· t— II it τ— Ό ro -> O x-** LA x-z • τ— Ό τ- Ό oo 00 1 o 1 o v— V" •Xs. Γ- *4* •xt I 1 (XI Ox z-s z"\ -Q .O (XJ (XJ • • v- (XJ *4- ro τ- 1 Ι LA (XJ ro x Z~\ X Ό LA o o X \/ o o Κ-» V 1 <_) 1 o 1 zs z-x Z"S z-\ z-\ z-\ X X X T" X X (XI *4" fxl (XJ (XJ (XJ x X X X X X ω ω ω ω ω (/) \~s X—* \-z X-X LA IA T" r- Ox 00 Οχ LA o CO 00 • • • * • β xO 00 00 00 00 N X ZX N X Οχ z-\ N X o O N X Οχ o o II (XI II O' 11 o II (XJ ~-D ro -> < Ό —> • X-Z • x-z X-Z • \-z (XI O (XJ Ό (XJ Ό (XI Ό z*> o cu o 0 o o τ— LA Ό x— 1 • a • · o • • v— Cl Q. • • (XI s: 5Ξ Ox \-z O (XJ O Z"S o (XJ r- 1 j «χίΟ CL fO X ia CO TO Φ 2-dichloroethane X X TT- J— TJ TO JO Ο Ό X -O ε Ol O.
TABLE 2: Compounds (IV) cj oc re X Pi z-> m g m X I —j cj o— Pl CJ 1 1 o a. O CJ m X—z W cc m x cj χΟ I X ω c <0 x: c 4-> α <υ o. o x-z U <-o O X X Oi o 5Ξ ··" 2 XJ «LA, 9" X m 9ro CJ oc (\j z~x m X CJ N r*- x *4* • o cj » \ co Ό 11 Γ— —, • X-Z CJ Ό N w O sr i< ro II x, N N> X x4 • CJ Γχin • Γ**x«O χΟ II —5 x-z O o *4 χΟ Ο* m _rn CS m x cj X Φ Q. X ε z-x o N o X X o a a r*» Φ II in —3 X-Z X -o ε x-z X-z CJ z-x 9— S~\ Ox m Οχ CJ o X 9 Z~\ a CJ o in m CJ 'Χχ. X 1 X χ4 CJ χΟ o O CJ C- X—z a X-Z a X 9" zz CJ 1 N χΟ X II N X o Ο T*4* • CJ 9— II N C- X in • CJ Fx- a Οχ 11 in -> X-Z b- Ό m m 9"I CJ CJ in •r CJ CJ CJ m CJ S\ m -rCJ ^z o x οΰ ο V • 9— N X co r^• 9 t- o 'x»n II N X o m c~ in 9"" 9 CO II v- -j X-Z 9- Ό N O X m • o 9" 9 o C- II m -> X-Z 9- ~O N Ox X in • CJ C* 9 9- 11 χΟ "5 a x-z fx- XJ o CJ 9" I CJ z*> m x cj x-z X cj CJ ZX m x cj X CJ M X cj I N O X 00 • < CJ · m CJ II o -> X-Z m "o N 9- X m • co Γ— 9 I 00 m ii m -j X-Z t- Ό N X CS O m • m o II *4 -5 'S 9- Ό N O X m cj c* 9 9— 9~ 1) in -ί *sZ fx- XJ CJ xo m χ4 m in x Ό cj m x cj N O X 9— • CO v— 9 Ο in ii 9— —) 9 X-Z 9- Ό N X Οχ o o m • CJ O II *4 "□ a x-z 9- XJ N C* X *4* • CJ c- a o* II m -a • x-z fx- XJ Ό x4 (XI ΙΌ o m 9·· I in x χΟ CJ in x Ό cj a) relative to 85% H^PO - 16 CM m Ul o U co m TABLE 3: Compounds (IV) Q.
CL ro cu o o cr X Z-x N ro o X X t— o • ro 1 • Ol c- o II <\l —> • o v- Ό f\J z~x Z—\ ro N X X o in x-z Cd 00 2 « B 1 Cd 00 CL II C- —i o *»z > Cd Ό in to c- X > LJ cn z-x O ω o c- • ro o Cd T— 1 X 00 z-x ω O x_z T—' 1 00 Cd co r- 1 • X CO z-x (/) ro x-z c- • 00 Φ z-x C o ro Z"\ jz ε •M ci 00 a O • V-» u in o <· \ JC X OZ o ro Cd s •r- 1 B 2 Ό in o J 1 a. Cd τ- r~ K Ι 1 ro z-x -Q N CO N ω XJ co c o L_ u ro I— 1— ε 2 h— ε o X X -C JZ +J +J Φ Φ ξ ε X X c c CL CL •r~ Z~X XJ —' —> X X o O X—' •Γ- z-x —J XJ —j X X-Z X JZ —J Z"X iZ 4~> X χ-χ _> •r— Φ .c —J X c ε +J X c ro <1) c •r— □ X ε •r- ω cn c: c o <υ X 0) 4-» X JZ c XJ X o a Φ ro (J t- co •r- X —j X sr • C_ Cl X X 4-» o xdf 4J •r— o o □ a. X u N N x> ro v- X M C c o X 1 o X (D o ω JZ X _Q JO Τ- co U o 1 1 Ι in 23 1) JZ o Cd co K ε +j 1 1 1 o Φ 2 2 2 o o c ε K-Z X-Z 4-> JJ o •γ- 1 1 1 □ ε ΤΟ o T"w o Φ o CO > •r— ti II II II i; •r— •f" e? «Μ +J L. c_ N □ ro ro ►— h- CO N co 2 Ό CD •r— a? C> 2 ό «X o e> u L. 1— «5- z-x z-x z-x z-x o ro JO a Ό OJ E Cl Q. vx - 17 ro x o OJ z-x in x CXI u ex (X ro X O N CN X xi • in f\J · \ Cb in it o • v (χι Ό oo to ro —j u> n o ro x o I cl Ο N xi X co o ΙΟ V• II "O |NII z-x -3 ro X X 4-* U> vx (\| X xi U) O' • z O I (XI ro I • m N X ζ-χ Ν /—* X N ΓΝ- X • • o Ν -ί- Ο o κ- X ο Χχ a Η • (ν- fN- "3 Ο a— • ΓΗ II • Χχ Ο (XI "3 V r- Γ- χχ. XX V (XI σ II (XJ Ο ΓΟ 4-Z z-x Ό ro XX • • X VX lonx χ ιη xt U) X ο χ Χχ II νχ N> ojin (\J (XI Ο "3 X O u> Ο ~7* u> ο « VX • Ο νχ • Ό ι_ι <— 2 ro 2 τ— V-z 2 >i • · O o o c (Ό xz Φ E *X ω 4-» Π3 4-» Φ O (0 N X o xi · ro o • II "Q (XJ o ro in oo o ro v— • II r— UJ *a ro r\j Ο Ό ro • II CO z-x ru σι N X CO • CO O Ό • II 1— —) Ul Ό N X rο* Γχin r• u "O -J ΙΕ J3 o TABLE 4: Compounds (VIII) o in I rx o o • (NN X (XI c\j · in r VZ r- ό N X (XJ O' V IA —3 VX |N- Ό bin • γνro m NN X (XJ II —3 in κ • X) N- *-* Φ u X Ό φ +-» U Q. zx z-s IS- z-x LU θ' X • O cn m ro o XX x —· o nx E VX C X > Q ro Σ0 E o -< (XI XX Φ C φ (ϋ -C ζ-χ «Η Ε Φ α Ο Ω. U νχ ο κ -C ο ο: ·Γ" ε χ> 2 ί 1 (XI CL κ ro nx (XI QZ II et: to ro x o o o vx E C xi >O (XI o in • o rn ι in x (XI o O • ro NO* • ro O o V xi 00 φ <Γ χ\ σι ω • σι □ Γχ Ο σι L. U X) α; ζχ X Ε ΟΟ .C Ο Ο C ω • ω «»— *i c xi Ό cxi ~a in o ro I m x (XJ O E C xt O OJ OO ro I r\j xx ro x U) vx X o o O (XJ /-X Φ ο ιη u • Φ ro Q. ro D. I □ in x Ό E C o o c\j χί O CL ro Φ X a xi t_ to • a) in o 3 03 t- ro O 1 O o 4-» 4-» o Φ Φ (XI > > ~r- •f- U 4-J fM Φ (D X Φ Φ U U « in x \O z-x XX z-x ο ω jo u lo o m r-l CN CM - 18 CQ 7\ ί Eh CN Tn Z ΓΠ I π O-Cn-O II O TABLE 5: Compounds (VIII) O z-x Pd N m • X X t— o **> *4 1 m • Q_ rd P- • II r— X_Z Ό CJ z-x z"x K) <- N X O X o X-Z Pd o z-x 2: *** • Ό 1 O 00 z—x a. o It E • —9 CL Pd x-z CL Ό ^-o jn IA e? P- X • z-x s fA m \ (Λ o O X-Z e> r- o • o m x^z or yr rd Γ" Z r— 1 » « X co z-x X x. V) N- x_z r— • 00 00 00 o • 1 oo z"x ω X ΚΊ x-z P- 00 z-x z-x z~x o Pd X m in o « • ΝΊ >4 X x»z x-z o x-z E E C C > z> 00 O P- ΡΊ Pd Pd z*x φ c o <0 z—x -C E 4-» CL Φ a o ,xz u o X x: CC X •r— X TJ Cjl I Pd X m r— z~x -4· I 'J' I M Of X) (0 >— o Mω (Ό Ό Id CO N OO X Ό CO •r- o < o ςο O X z-x X> U U u H F- l·- X yr s: z-x SC sc o CD LT) - 19 x*\ O cTr XZ' X Q KI X <_) I Q. ro o o o ro x o I CU ro or to X o I c- in co • II o in co v• II N X CU • xt xt Ο T lieu —3 \_z a h- N Q. X ro xt o χ* CU <· z-x N Q. X CU O w oo Ch to oo O KO II fU X o O Qh v* • II r- —J \-z "O μα o χί00 to O* ' TABLE 6: Compounds (I) jo <υ c o rxi x «j ε s~\ UJ X ο σ> roo x —> o s> χ·χ Φ Φ C Π1 ε -c a +j a φ O κ x: ctr o * z X5 I I Q- CU v- \ fO 5— t_ Φ Q.
CL D t_ Φ O t_ Φ Ω.
Cl □ L. Φ jC o m ε c in o cu oo o o I to O CU e c xjO CU N X o o CO u Γχ- Qj ro co It -> a in in Φ to a) relative to 85% H7P0, b) relative mobility in TLC (ethyl acetate/methanol 100:4) c) relative to TMS
Claims (12)
1. A process for the preparation of a deoxyribonucleoside phosphonate of the general formula I in which T denotes a protecting group for a primary hydroxyl g roup, B denotes a nucleoside base radical in which one exoamino group present is protected, G denotes a protecting group for a secondary hydroxyl group, Z denotes oxygen, sulfur or selenium and R denotes alkyl having up to 8 C atoms, cyclohexyl, benzyl, or phenyl optionally substituted by fluorine, chlorine, bromine, lower alkyl, lower alkoxy or trifluoromethyl, which comprises reacting a difunctional phosphony1ating reagent of the general formula II X R - P''* 'Y (II) wherein X denotes chlorine the formula or Y and Y denotes a group of 1 ? R and R representing identical or different alkyl or cycloalkyl radicals having up to 8 C atoms, or phenyl radicals, or R' and R , together with the nitrogen, representing a saturated or unsaturated heterocyclic ring which can contain further heteroatoms, with a nucleoside of the general formula III (III) H-0 wherein T and B have the meanings given above, reacting the resulting compound of the general formula IV B (IV) with a compound of the general formula V H-O..0 G-0 (V) wherein B and G have the meanings given above, and oxidatively converting the resulting compounds of the general formula VI G —O (VI) wherein T, R, B and G have the meanings given above, to compounds of the general formula 1.
2. A process as claimed in claim 1, wherein compounds of the formulae II to IV are used in which T denotes tripheny ImethyI, p-anisoy IdiphenyImethyI or di(p-anisoyl)phenylmethyl, B denotes 1-thyminyl, 1-(N-4-benzoyIcytosinyI), 9-(N~ 6-benzoyladeniny I) or 9-(N-2-isobutyroy Iguaniny I) and R denotes methyl, ethyl, phenyl or benzyl.
3. A process as claimed in claim 1 or 2, wherein the compounds of the formulae II and III are reacted at -80 to +100°C.
4. A process as claimed in claim 3, wherein the reaction takes place at -20 to 0°C.
5. A process as claimed in one or more of the preceding claims, wherein the compounds of the formulae IV and V are reacted at -20 to +100°C„
6. A process as claimed in claim 5, wherein the reaction takes place at room temperature.
7. A process as claimed in one or more of the preceding claims, wherein the compound of the formula VI is oxidatively converted to a compound of the formula I at -80 to +100°C.
8. A process as claimed in claim 7, wherein the oxidation takes place at -20°C to room temperature.
9. A compound of the formula IV in which T, B, R and Y have the meanings given in claim 1.
10. A process as claimed in Claim 1 for the preparation of a deoxyribonucleoside phosphonate of the general formula I given and defined therein, substantially as hereinbefore described and exemplified. 5
11. A deoxyribonucleoside phosphonate of the general formula I given and defined in Claim 1, whenever prepared by a process claimed in preceding claim.
12. A compound of the formula IV according to Claim 9, substantially as hereinbefore described and exemplified.
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
DE19833332068 DE3332068A1 (en) | 1983-09-06 | 1983-09-06 | METHOD FOR PRODUCING NUCLEOSIDALKYL, ARALKYL AND ARYLPHOSPHONITES AND PHOSPHONATES |
Publications (2)
Publication Number | Publication Date |
---|---|
IE842268L IE842268L (en) | 1985-03-06 |
IE57904B1 true IE57904B1 (en) | 1993-05-05 |
Family
ID=6208339
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
IE2268/84A IE57904B1 (en) | 1983-09-06 | 1984-09-05 | Process for the preparation of nucleoside alkyl-,aralkyl-and aryl-phosphonites and-phosphonates |
Country Status (11)
Country | Link |
---|---|
EP (1) | EP0136543B1 (en) |
JP (2) | JPS6072899A (en) |
AT (1) | ATE38839T1 (en) |
AU (2) | AU570266B2 (en) |
CA (1) | CA1235079A (en) |
DE (2) | DE3332068A1 (en) |
DK (3) | DK162895C (en) |
ES (1) | ES8505384A1 (en) |
GR (1) | GR80287B (en) |
IE (1) | IE57904B1 (en) |
PT (1) | PT79172B (en) |
Families Citing this family (13)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US4959463A (en) * | 1985-10-15 | 1990-09-25 | Genentech, Inc. | Intermediates |
DE3916871A1 (en) * | 1989-05-24 | 1990-11-29 | Boehringer Mannheim Gmbh | MODIFIED PHOSPHORAMIDITE PROCESS FOR THE PREPARATION OF MODIFIED NUCLEIC ACIDS |
ATE151076T1 (en) * | 1990-07-02 | 1997-04-15 | Hoechst Ag | OLIGONUCLEOTIDE ANALOGUES WITH TERMINALS 3'-3' OR 5'-5' INTERNUCLEOTIDE LINKAGES |
US5512668A (en) * | 1991-03-06 | 1996-04-30 | Polish Academy Of Sciences | Solid phase oligonucleotide synthesis using phospholane intermediates |
AU678769B2 (en) * | 1992-07-27 | 1997-06-12 | Hybridon, Inc. | Oligonucleotide alkylphosphonothioates |
DE69402177T2 (en) * | 1993-01-08 | 1997-06-26 | Hybridon Inc | SYNTHESIS OF DIMER BLOCKS AND THEIR USE IN THE COMPOSITION OF OLIGONUCLEOTIDES |
US6087491A (en) | 1993-01-08 | 2000-07-11 | Hybridon, Inc. | Extremely high purity oligonucleotides and methods of synthesizing them using dimer blocks |
ES2086997T3 (en) * | 1993-01-25 | 1996-07-01 | Hybridon Inc | OLIGONUCLEOTIDE-ALKYLPHOSPHONATES AND -ALKYLPHOSPHONOTIOATES. |
US6417138B1 (en) * | 1994-07-26 | 2002-07-09 | Sony Corporation | Method for transcribing an image and a support for transcription and ink ribbon employed therefor |
EP0828749B1 (en) * | 1995-05-26 | 2003-07-16 | Genta Incorporated | Methods for the synthesis of organophosphorus derivatives |
CA2226111C (en) * | 1996-05-03 | 2005-09-20 | Hybridon, Inc. | In situ preparation of nucleoside phosphoramidites and their use in synthesis of oligonucleotides |
DE102004049339A1 (en) * | 2004-10-08 | 2006-04-13 | Basf Ag | Process for the purification of phosphorus-containing chelate ligands |
DE102007038930B4 (en) * | 2007-08-13 | 2013-12-05 | Universität Leipzig | New chemical compound and its use in medicine, in particular for use in tumor therapy |
Family Cites Families (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
IL62834A0 (en) * | 1980-05-14 | 1981-07-31 | Ens Bio Logicals Inc | Polynucleotide synthesis |
US4415732A (en) * | 1981-03-27 | 1983-11-15 | University Patents, Inc. | Phosphoramidite compounds and processes |
EP0090789A1 (en) * | 1982-03-26 | 1983-10-05 | Monsanto Company | Chemical DNA synthesis |
DE3239888A1 (en) * | 1982-10-28 | 1984-05-03 | Hubert Prof. Dr. 2000 Hamburg Köster | METHOD FOR PRODUCING OLIGONUCLEOSIDE PHOSPHONATES |
-
1983
- 1983-09-06 DE DE19833332068 patent/DE3332068A1/en not_active Withdrawn
-
1984
- 1984-08-30 AT AT84110314T patent/ATE38839T1/en not_active IP Right Cessation
- 1984-08-30 EP EP84110314A patent/EP0136543B1/en not_active Expired
- 1984-08-30 DE DE8484110314T patent/DE3475307D1/en not_active Expired
- 1984-09-04 ES ES535627A patent/ES8505384A1/en not_active Expired
- 1984-09-04 PT PT79172A patent/PT79172B/en active IP Right Revival
- 1984-09-04 GR GR80287A patent/GR80287B/en unknown
- 1984-09-05 AU AU32756/84A patent/AU570266B2/en not_active Expired
- 1984-09-05 DK DK424784A patent/DK162895C/en active
- 1984-09-05 CA CA000462469A patent/CA1235079A/en not_active Expired
- 1984-09-05 IE IE2268/84A patent/IE57904B1/en not_active IP Right Cessation
- 1984-09-05 JP JP59184717A patent/JPS6072899A/en active Granted
-
1988
- 1988-02-08 AU AU11384/88A patent/AU601257B2/en not_active Expired
-
1991
- 1991-07-05 DK DK131691A patent/DK167359B1/en active IP Right Grant
- 1991-07-05 DK DK131591A patent/DK166585C/en active
-
1992
- 1992-11-18 JP JP4307481A patent/JPH0662662B2/en not_active Expired - Fee Related
Also Published As
Publication number | Publication date |
---|---|
PT79172B (en) | 1986-09-10 |
DK162895C (en) | 1992-05-11 |
DK167359B1 (en) | 1993-10-18 |
JPH0531560B2 (en) | 1993-05-12 |
DK166585B (en) | 1993-06-14 |
IE842268L (en) | 1985-03-06 |
AU3275684A (en) | 1985-03-14 |
DK131691A (en) | 1991-07-05 |
EP0136543A3 (en) | 1986-07-16 |
ES535627A0 (en) | 1985-05-16 |
AU570266B2 (en) | 1988-03-10 |
JPH0662662B2 (en) | 1994-08-17 |
PT79172A (en) | 1984-10-01 |
AU601257B2 (en) | 1990-09-06 |
GR80287B (en) | 1985-01-07 |
DK131591A (en) | 1991-07-05 |
ATE38839T1 (en) | 1988-12-15 |
DK131591D0 (en) | 1991-07-05 |
JPS6072899A (en) | 1985-04-24 |
ES8505384A1 (en) | 1985-05-16 |
CA1235079A (en) | 1988-04-12 |
JPH05262787A (en) | 1993-10-12 |
EP0136543A2 (en) | 1985-04-10 |
DE3475307D1 (en) | 1988-12-29 |
DK131691D0 (en) | 1991-07-05 |
AU1138488A (en) | 1988-07-14 |
DE3332068A1 (en) | 1985-03-21 |
DK424784D0 (en) | 1984-09-05 |
DK166585C (en) | 1993-10-25 |
EP0136543B1 (en) | 1988-11-23 |
DK162895B (en) | 1991-12-23 |
DK424784A (en) | 1985-03-07 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
US4725677A (en) | Process for the preparation of oligonucleotides | |
USRE34069E (en) | Process for the preparation of oligonucleotides | |
IE57904B1 (en) | Process for the preparation of nucleoside alkyl-,aralkyl-and aryl-phosphonites and-phosphonates | |
WO2013036748A1 (en) | Bicyclo[6.1.0]non-4-yne reagents for chemical modification of oligonucleotides | |
EP3950698A1 (en) | Method for producing oligonucleotide having phosphorothioate site | |
US5166330A (en) | Process for the preparation of nucleoside alkyl-aralkyl- and aryl-phosphonites and -phosphonates | |
EP0305201B1 (en) | Protected biotin derivatives | |
US4873355A (en) | Process for regioselectively preparing phosphorylated inositols and other cyclitols | |
US4138433A (en) | Process for preparing 1,2-oxa-phospholanes | |
KR20130008547A (en) | β-DIHYDROFURAN DERIVING COMPOUND, METHOD FOR PRODUCING β-DIHYDROFURAN DERIVING COMPOUND OR β-TETRAHYDROFURAN DERIVING COMPOUND, β-GLYCOSIDE COMPOUND, METHOD FOR PRODUCING β-GLYCOSIDE COMPOUND, AND METHOD FOR PRODUCING 4'-ETHYNYL D4T AND ANALOGUE COMPOUNDS THEREOF | |
US4916249A (en) | Glycero-3(2)-phospho-L-serine derivatives and salts thereof | |
US4924023A (en) | Phosphorylated inositols | |
Stamatov et al. | Glyceroamidothiophosphates of cholecalciferol (Vitamin D3) | |
US4474947A (en) | Benzazolides and their employment in phosphate ester oligonucleotide synthesis processes | |
Watanabe et al. | Synthesis of PI (3, 4, 5) P3 with unsaturated and saturated fatty acid chains | |
CA1300637C (en) | Single-stage process for preparing mixed-substituted 1,2-diacyl-sn-glycero-3-phosphocholines | |
Eleuteri et al. | Synthesis of dimer phosphoramidite synthons for oligodeoxyribonucleotide phosphorothioates using diethyldithiocarbonate disulfide as an efficient sulfurizing reagent | |
KR100889897B1 (en) | Process for preparing phosphorodiamidites | |
Dabkowski et al. | Synthesis of phosphorofluoridates and phosphorofluoridothioates via the phosphoramidite approach | |
US5026898A (en) | Process for regioselectively preparing phosphorylated inositols and other cyclitols | |
Hörndler et al. | Nucleotides Part LI. Synthesis and biological activities of (2′‐5′) adenylate trimer conjugates with 2′‐terminal 3′‐O (ω‐hydroxyalkyl) and 3′‐O‐(ω‐carboxyalkyl) spacers | |
Eleuteri et al. | Efficient Synthesis of Deoxyribonucleoside Phosphoramidites by Eliminating the Use of Additional Activator | |
JP3485024B2 (en) | Nucleotide compounds | |
Yamashita et al. | Synthesis of novel nitro-substituted 1-phenoxy-2-phospholenes and phospholanes | |
Cramer et al. | Nucleotides, Part LX, Synthesis and Characterization of New 2′‐O‐Methylriboside 3′‐O‐Phosphoramidites Useful for the Solid‐Phase Synthesis of 2′‐O‐Methyloligoribonucleotides |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
MK9A | Patent expired |