GB2429012A - Polypeptides capable of binding an integrin I-domain. - Google Patents

Abstract

The present invention provides novel polypeptide comprising the amino acid sequence of SEQ ID NOS: 1, 2, 3 or 4, variants, fusions or derivatives thereof, and pharmaceutical formulations of the same. The peptides and formulations of the invention are useful for treating diseases or conditions capable of being treated by an agent which modulates the function of an integrin and/or a metzincin, such as arthritic diseases, inflammatory diseases and conditions and cancer. Also provided are diagnostic methods for such diseases and conditions, and methods of screening for candidate compounds with efficacy in the treatment of such diseases and conditions.

Description

NOVEL POLYPEPTIDES AND USES THEREOF

Field of Invention

The present invention relates to novel polypeptides capable of binding to an integrin I-domain, and to pharmaceutical compositions comprising the same. The invention further provides uses of such polypeptides and pharmaceutical compositions in the treatment of diseases and conditions associated with abnormal function of cellular processes involving integrins and metzincins. in particular, the present invention provides novel agents for the treatment of arthritic diseases (such as osteoarthritjs and rheumatoid arthritis), inflammatory diseases and cancer.

Introduction

Inte grins Integrins are widely expressed receptors that function primarily as mediators of cell-extracellular matrix (ECM) interactions. Integrins consist of one a subunit and one f3 subunit, which together form a non-covalently bound heterodimer (Hynes 2002). To date, eight 13 subunits and 18 a subunits have been characterised in man, forming twenty-four different heterodimers. Four of the integrin heterodimers, namely a1131, a2f31, alO13l and allf3l, are receptors for collagens, the most abundant of ECM proteins, and are known as the collagen- bin ding integrins'.

The collagen-binding integrin heterodimers are glycoproteins having masses 220 kDa (a --430, f3 -90) for the polypeptides, plus additional glycosylation. The u-subunit ectodomains consist of the N-terminal head region and the leg or stalk region. The a-subunit head regions are formed from a seven-bladed 13-propeller domain, with the al-domain looping out from between blades 2 and 3. The three leg region domains, thigh. upper calf and lower calf, all have 13-sandwich folds.

The 13-subunit head region includes the PSI, hybrid and 1-like (131) domains, and interacts extensively with the 13-propeller domain of the asubunit.

The collagen-binding integrins contain an al-domain (von Willebrand factor A- like domain) inserted into the a-subunit 13-propeller domain between blades 2 and 3. The al-domain is the main collagen-binding site. The f31-dornains inserted into integrin 13-subunit hybrid domains share homology with al-domains. The aT- domains and 131-domains have a central 13-sheet surrounded with a-helices. Metal binding sites are present in al-domains and 131-domains, and divalent cations (specifically Mg2, Ca2 or Mn2), are required for high affinity binding to collagens.

The al-domains of the collagen-binding integrins exhibit structural differences giving rise to their different ligand preferences. Structural differences that enable discrimination between the a-subunits are also useful in design of a 10131- and all 131-selective peptides capable of binding to the aT-domains.

In man, all four collagen-binding integrins have different expression patterns.

integrin a1131 is expressed in mesenchymal cell types including smooth muscle cells, endothelial cells, fibroblasts and chondrocytes (Voigt el a!. 1995). It is also found on certain lymphocytes and monocytcs. Integrin a2131 is expressed on epithelial cells, platelets, endothelial cells, fibroblasts, chondrocytes (Zutter and Santoro 1990), lymphocytes, mast cells, and neutrophilic granulocytes. In comparison, expression of the integrins al 0131 and al 1131 is more restricted. The al 0131 integrin is mainly expressed by chondrocytes but has also been detected in the heart valves and in the fibrous lining of skeletal muscle, tendon and in periosteum and perichondrium. The aT 1131 integrin is expressed on specialised fibroblasts in tendon, periodontal ligaments, perichondrium, periosteum, and synovium. (Camper et al. 2001;Tiger et al. 2001).

Structural and functional aberrations of these and other members of the integrin family, illustrated by their knockout models, result in a number of pathologies (Gardner et a!. 1996:Bouvard et al. 2001 Chen et al. 2002:Bentsson ci al. 2005).

it is therefore not surprising that these inlegrins have great potential as therapeutic targets. For example, the restricted distribution of the integrins ul 0f31 and al 1(31, mainly to tissues in the joint, bone and cartilage, tendon and synovium. implicates a potential role for these integrins as therapeutic targets for diseases associated with such tissues, for examp]e osteoarthritis and rheumatoid arthritis (lannone and Lapadula 2003). in addition, the alO(3l and 1 1(31 inlegrins are believed to play a role in other pathological conditions involving tissues in which the expression of these integrins is altered, such as atherosclerosis (W() 03/1 05886), carcinoma (Wang el al. 2002), tumour metastasis (Melendez et al. 2005) (see also hrtp://hioinfb.cnio, es/data/oncochip/content 12.htinl), melanoma, periodontitis, osteoporosis, as well as in diseases and other conditions involving elevated levels of MMPs which associate with collagen-binding integrins, such as multiple sclerosis, periodontitis, osteoporosis, osteosarcoma, osteomyelitis, bronchi ectasis, chronic pulmonary obstructive disease, and skin and eye diseases (Mohammed et al. 2003).

A comprehensive review of integrins as therapeutic targets is given in (Eble 2005) and (Rose et al. 2000).

IVJetzincins Metzincins (zinc-dependent metallopeptidases) are a superfamily of proteases that includes the matrixin family of matrix metalloproteinases (MMPs), which are well known regulators of extracellular matrix (ECM) proteolysis in the microenvironment. Other members of the metzincin superfamily include the transmembrane proteases ADAMs (a disintegrin and metalloproteinases) and the secreted ADAMTSs (ADAM with thrombospondin domain). Although not all ADAMs are proteolytically active, they are recognised for their ability to process or shed cell surface molecules, whereas ADAMTS enzymes can cleave matrix and other proteins and are implicated in diseases such as arthritis (Clark and Parker 2003).

in/c grin and MMP interactions Matrix metalloproteinases (MMPs) constitute a superfamily of 25 zinc-dependent and calcium-dependent proteinases in mammalian S stems. and are thought to he the major proteolytic enzymes that facilitate tissue remodeling in both physiological and pathological situations (Nagase and Woessner, Jr. 1999) (Elliott S. and Cawston 2001;Vu and Werh 2000). MMPs have the combined ability to degrade the major components of the extracellular matrix (ECM) (Birkedal-Hansen 1995). Moreover, the MMP family contains the only mammalian proteinases which can specifically degrade triple helical collagens, the ligands for the a10f1 and al lf3l integrins, at neutral pH. These so-called collagenases specifically cleave a single locus in all three collagen chains at a point three-quarters from the N-tern-iinus of the molecule. The classical' collagenases (MMP-l, -8 and -13) have differing substrate specificities for collagens 1, II and III, with MMP- 13 showing a preference for type II collagen (Knauper ci al. 1996). More recently, gelatinase A (MMP-2) and MT1 -MMP (MMP-l4) have also been shown to cleave collagen in a specific manner, though with less catalytic efficiency than the classical collagenases, at least in vitro (Vincenti and Brinckerhoff 2002). The enzyme(s) responsible for cartilage collagen cleavage in the arthritides remains open to debate, but the dogma has been that MMP-1, produced in the synovium, is the primary collagenase in rheumatoid arthritis (RA), whilst MMP- 13. produced by the chondrocyte, is the foremost collagenase in OA. Several other members of the MMP family have been localised to cartilage or synovium in the arthritides (Pap ci al. 2000).

Due to their destructive nature in pathological diseases such as OA and RA, the synthesis and activation of the MMPs are very tightly controlled in normal tissues. Cells release most of the MMPs as pro-enzymes which are later activated in the extracellular matrix. Additionally, MMPs are often trapped in a deactivating complex with tissue inhibitors of metalloproteinases (TIMP).

Increasing evidence now shows that integrins can bind to MMPs and that ligand binding to an integrin can also regulate MMP expression (Lee and Murphy 2004).

The induction of MMP expression upon collagen stimulation has been reported from several different cell lines, including keratinocvtes, smooth muscle and osteoprogenitor cells (Riikonen ci at. 1995). Major functions of the a2l receptor include the induction of' MMPI. MMPI3 and MTI-MMP. as well as activation of proMMP2 (Langholz et al. I 995Heino 2000;Eckes et al. 2000Zigrino et al. 2001). Collagen-induced ligation of a2f31 was also reported to up-regulate collagen levels, thereby antagonising al 3] function (Ivaska ci at.

1999).

The formation of a direct complex between a collagen-binding integrin and an MM1 has recently been shown in keratinocytes plated on native type I collagen (Dumin ci' at. 2001). In this complex, the collagen-binding epitope of the a2j31 integrin has been mapped to the hemopexin domain of pro-MMP I. While binding to the I-domain of the a2 subunit, pro-MMPI physically competes with binding of collagen to the same site (Stricker ci at. 2001). Furthermore, recent results suggest that MTI MMP mediated cellular invasion of ovarian cancer cells through a collagen matrix depends on a2J3 I ligation and pro-MMP2 processing (Ellerbroek ci al. 2001). Integrin al knockout mice provide additional evidence for integrin-regulated MMP expression with over-expression of MMP7 and MMP9 (Pozzi ci al. 2000).

All these data indicate that collagen-binding integrins are capable of regulating MMP activity via binding of' both their natural ligand (e.g. collagen) and/or by binding the MMP at the cell surface for further processing and/or activation (Lee and Murphy 2004).

MMPs in cartilage patholo Normal cartilage ECM is in a state of dynamic equilibrium, with a balance between proteinases that degrade the ECM and their inhibitors. The ECM of cartilage is made up of two main macromolecules, type II collagen and aggrecan, the latter being a large aggregating proteoglycan (Hardingham and Fosang 1992;Prockop 1998). The type II collagen scaffold endows the cartilage with its tensile strength, whilst the aggrecan, by virtue of its high negative charge, swells against the collagen network as it draws water into the tissue, enabling it to resist compression. Quantitatively less abundant components (e.g. type IX. XI and VI collagens, higlycan, decorin. COMP etc.) also have important roles in controlling matrix structure and organisation (Heinegàrd ci a!. 2003).

In OA and other joint diseases, it is thought that a disruption of this balance in favour of proteolysis leads to pathological cartilage destruction. Progressive degradation of thc ECM that comprises the tissue of articular joints, including articular cartilage, bone and even intraarticular ligaments and tendons, is a major feature of the arthritic diseases, leading to pennanent loss of function. Although protcinases of all mechanistic classes play a role in the degradation of connective tissue macromolecules, it has long been thought that the major activities involved in this process belong to the family of MMPs. These enzymes are secreted by both the resident cells of joint tissues (chondrocytes), neighboring cells in the synovium as well as by invading cells, they are active around neutral values of pH, and they have the combined ability to degrade all the components of the ECM (Murphy ci a!. 2002). MMPs play significant roles in both developmental and repair processes, and it appears that aberrant regulation, which can occur at many levels, leads to their hyperactivity in diseases such as rheumatoid arthritis (RA) and osteoarthritis (OA). Significant evidence now exists for the overexpression of MMPs in tissues derived from patients with arthritic disease (Kevorkian eta!. 2004;Konttinen ci al. 1999).

MMPs in OA andRA The identity of the individual MMPs responsible for cartilage collagen cleavage in the arthritides is still questionable and is proposed to differ between OA and RA. Cartilage degradation in OA and RA is primarily mediated by the chondrocytes, the synovial fibroblasts and on occasions by osteoclasts (Vincenti and Brinckerhoff 2002).

While all of the coilagenolytic MMPs (MMPs 1, 8, 13, and 14) produced by chondrocytes can cleave collagen II at (i1u975-Leu976 (Sandy 2003) and have been localised in synovial tissue (Clark and Parker 2003), there is now an accumulating body of evidence, both direct and indirect, which implicates MMPI 3 as the actual collagenase responsible for initiating collagen destruction in OA. This evidence comes from studies with proteinase inhibitors.

immunolocalisation of MMP proteins, and in situ hybridisation for a range of MMP transcripts (Sandy 2003). Studies on normal and OA human articular cartilage explants using MMP inhibitors indicate that MMPI3 or MMP8. but not MMPI. are responsible for the generation of the G1u975-Leu976 cleavage (Billinghurst el al. 2000).

MMP13 is transcriptionally regulated in areas of degraded cartilage matrix in osteoarthritic tissue by cytokines such IL-i and TNFa (lannone and Lapadula 2003;Mitchell et al. 1996) or alternatively by biomechanical factors (Sun and Yokota 2001;Shlopov et al. I 997;Shlopov et al. 1997). This increase in supply of the pro-enzyme results in high activity upon activation of the pro-MMP 13. Such activation most likely involves a cell surface process requiring MTI MMP (MMPI4) (Cowell et al. 1998:Murphy et al. 1999) so that the level of active MMPI3 is determined, in part, by the production and regulation of MT1MMP.

MMPI 3 levels are also regulated by the abundance of TIMPs 1, 2 and 3 (tissue inhibitor of metalloproteinases), the protective effects of which are overwhelmed in osteoarthritic cartilage. Further support for the central role of MMP 13 has been obtained from a transgenic mouse overexpressing MMP13 (Neuhold c/ al. 2001).

In summary, high levels of MMPI 3 mRNA and protein appear to be localised to areas of high collagenolytic activity. Moreover, hMMP 13 is 5-10 times as active as hMMPI in its ability to digest collagen type II, suggesting that MMP13 has a unique role in collagen Il-rich tissue such as articular cartilage (Knauper et a!.

1996). This therefore makes MMP 13 production and regulation a suitable target for therapeutic control in diseases such as, but not limited to, the arthritides.

In RA, a disease that affects multiple synovial joints and involves inflammation of the synovial membrane, the synovium proliferates to form an invasive pannus and the cartilage parmus junction is a site of enhanced cartilage degradation.

Inflammation is accompanied by an influx of immune-competent cells, which constitute not oniy the resident fibroblast-like synoviocytes, but also macrophages, T-lvmphocvtes and mast cells (Kohayashi and Okunishi 2002).

Fibrohiasts contribute to joint destruction both directly, through enhanced production of MMPs. and indirectly, through excessive release of cytokincs that boost the immune system and in turn stimulate the MMP production. Targeting the proliferative fibroblast and its MMP production could facilitate regeneration of synovial joints.

A large body of evidence now exists that shows that MMPI and MMP3 are the most important MMPs for joint destruction in RA (Poole 2001), although almost all the MMPs have been detected in RA synoviuni (Pap ci a!. 2000). MMP3's role appears to he restricted to invasiveness, probably permitting transmigration of inflammatory cells from the blood vessels into the synovium, leaving MMPI as the main MMP responsible for cartilage collagen degradation. Cytokines such as IL-I and TNFa produced by the invading inflammatory cells (Arend 2001;Goldring 2003) stimulate the resident synovial fibroblasts to produce MMPI (and MMP3). Furthermore, both MMPI and MMP3 are also induced by the recently discovered extracellular matrix metalloproteinase inducer (EMMPRIN) (Tomita ci al. 2002).

MMPs iii other diseases (i) Cancer Degradation of extracellular matrix is crucial for malignant tumour growth, invasion, metastasis and angiogenesis. Elevated levels of distinct MMPs can be detected in tumour tissue or serum of patients with advanced cancer, and their role as prognostic indicators in cancer has been widely examined. It is conceivable, that degradation of collagenous ECM by the secreted collagenases (MMPI, MMP8 and MMPI3) is essential for invasion of malignant cells. These MMPs often colocaljse with other MMPs, i.e. MTI MMP, MMP2, indicating that a proteolytic cascade is required for activation. It is evident, that not only malignant cells hut also stromal fibroblasts and inflammatory cells produce MMPs in response to stimulation by different exogenous factors, like cytokines and tumor promoters. In addition, this may contribute to proteolytic remodeling of the peritumoral ECM. Numerous studies have demonstrated over-expression of collagenases in malignant tumors in comparison to normal tissue, suggesting a role for them in cancer cell invasion (Hofiuiann et al. 2OO5AJa-aho and Kahari 2005;Vihinen ci al. 2005).

(ii) Inflammation MMPs regulate extracellular matrix and connective tissue turnover. In a number of inflammatory diseases, the affected tissue is remodelled in a manner that is detrimental to the patient. The contribution of MMPs to the pathology and resulting debility is exemplified by the role of these enzymes in diseases such as arthritis, COPD, atherosclerosis and inflammatory bowel disease (IBD) (Whelan 2004).

In contrast to MMP-medjated tissue damage during inflammation, increasing evidence suggests that MMPs can function independently of their ECM degrading activity. Recent reports suggest that specific MMPs may serve as proinflammatory mediators whereas others serve to dampen inflammation through the control of chemokjne regulation (Mohammed et al. 2003).

Inie grins and MMP inhibitors Much work has been focused on the design of small molecules as metalloproteinase inhibitors for the treatment of arthritic diseases (Henrotin et al. 2002:Borkakotj 2004;Clark and Parker 2003;Smolen and Steiner 2003;Wicjand el al. 2005). Although inhibitors for MMPs have been developed, testing of such agents is still mostly at the experimentation stage and no clinically acceptable inhibitor.Ibr MMPs exists as a therapeutic or prophylactic drug for any of the pathological states and diseases potentially connected with MMPs. All MMP inhibitors to that have been tested in clinical studies to date have failed due to toxic side effects.

As an alternative to developing inhibitors that directly bind to the MMP, the present inventors focused upon regulating the binding of the MMP to the collagen-binding integrins. This approach can circumvent the problems with toxic side effects of direct MMP hinders and allow a more tissue (site) specific regulation of the MMPs.

Given the restricted distribution of the integrins x10f31 and ul ll in adult organisms, targeting MMPs via their interaction with these integrins allows more site-specific effects and in addition can limit any potential treatment-related toxicity. Of particular interest is the pathological elevation of MMPs over the body's endogenous anti-proteinase shield, which is seen in a variety of diseases such as osteoarthrjtjs. rheumatoid arthritis as well as in other diseases such as atherosclerosis cancer, metastasis, multiple sclerosis. periodontitis, osteoporosis.

osteosarcoma osteomyel itis, bronchi ectasi s, Chronic pulmonary obstructive disease, and skin and eye diseases. Proteolytic enzymes, especially MMPs, are believed to contribute to the tissue destruction damage associated with these diseases (Mohammed ef a!. 2003).

An alternative to rational molecular design is to screen libraries of random peptides or other small molecules to find lead compounds which are capable of binding to specific targets. In particular, peptide libraries displayed on the surface of bacteriophage have often yielded valuable binding peptides to target proteins, including integrins. The identified peptides can either he developed as drugs themselves or he used in screening of chemical substances that hind to the same site or be used in co-crystallisatjon together with the target for subsequent drug design.

Accordingly, the present invention seeks to provide novel treatment for diseases and conditions involving abnormal function of integrins and/or metzincins.

Summary of Invention

A first aspect of the invention provides an isolated polypeptide capable of binding to an integrin I-domain wherein the polvpeptide comprises an amino acid sequence selected from the following group: GIWFENEW [SEQ ID NO:1J: WIWPDSGW [SEQ ID NO:2J WENWDGWG [SEQ ID NO:3]: and/or WEDGWLHA [SEQ ID NO:4j.

or a variant, fusion or derivative thereof, or a fusion of a said variant or derivative thereof.

By SI-domain' we mean an inserted (T-) domain of an inlegrin a-subunit and/or an integrin 3-subunit, located in the N-terminus of the subunit and typically comprising approximately 200 amino acids in length. The aldomain (von Willebrand factor A-like domain) is an independent, autonomously folding domain inserted into the a-subunit 13-propeller domain between blades 2 and 3.

131-domains share homology with al-domains. Both the al-domains and f31domains have a central f3-sheet surrounded with a-helices. By I-domain' we include related A-domains, for example the A-domain of von Willebrand factor.

Preferred I-domains are detailed in the Examples below.

By capable of binding' we mean that binding of the said polypeptide to the said 1-domain can he detected using techniques known in the art, for example as described in Examples below. Convenient methods include phage display, affinity chromatography, surface plasmon resonance, yeast two-hybrid interactions, co-purification, ELISA, co-immunopreci pitation methods and cellular response assays.

The term polypeptide' as used herein means a plurality of amino acids that are linked together via a peptide bond.

II

In the formulas representing polypeptide embodiments of the present invention.

the amino- and carhoxy-terminal groups. although often not specifically shown, will he understood to he in the form they would assume at physiological pH values, unless otherwise specified. Thus. the N-terminal H2 and C-terminal 0 at physiological pH are understood to be present though not necessarily specified and shown. either in specific examples or in generic formulas. In the polypeptide notation used herein, the lefthand end of the molecule is the amino terminal end and the right-hand end is the carboxy-terminal end, in accordance with standard usage and convention. The basic and acid addition salts including those which are formed at non-physiological p1-I values are also included in the polypeptides of the invention.

The term amino acid' as used herein includes the standard twenty genetically- encoded amino acids and their corresponding stereoisomers in the D' form (as compared to the natural L' form). omega-amino acids other naturally- occurring amino acids, unconventional amino acids (e.g. a, a -disubstituted amino acids, N- alkyl amino acids, etc.) and chemically derivatised amino acids (see below).

When an amino acid is being specifically enumerated, such as alanine or Ala' or A, the term refers to both L-alanine and D-alanine unless explicitly stated otherwise. Other unconventional amino acids may also be suitable components for polypeptides of the present invention, as long as the desired functional property is retained by the polypeptide. For the peptides shown, each encoded amino acid residue, where appropriate, is represented by a single letter designation, corresponding to the trivial name of the conventional amino acid.

Preferably, the polypeptides of the invention comprise or consist of Lamino acids In a preferred embodiment of the first aspect of the invention, the polypeptide is less than 50 amino acids in length. Preferably, the polypeptide is less than 40 amino acids in length, for example less than 30, less than 20, less than 1 5, less than 14, less than 13, less than 12. less than II, less than 10, less than 9, less than 8, or less than 7 amino acids in length. More preferably, the polypeptide is between 8 and 10 amino acids in length. Most preferably, the polypeptide of the invention is 10 amino acids in length.

Ii will be appreciated by persons skilled in the art that the first aspect of the invention encompasses variants, fusions and derivatives of the defined polypeptides, as well as fusions of a said variants or derivatives, provided such variants, fusions and derivatives retain the capability of binding to an integrin I- domain.

Variants (whether naturally-occurring or otherwise) may be made using the methods of protein engineering and site-directed mutagenesis well known in the art using the recombinant polynucleotides (see example, see Molecular Cloning: a Laboratory Manual, 3rd edition, Sambrook & Russell, 2001. Cold Spring Harbor Laboratory Press).

By fusion' of said polypeptide we include a polypeptide fused to any other polypeptide. For example, the said polypeptide may be fused to a polypeptide such as glutathione-S-transferase (GST) or protein A in order to facilitate purification of said polypeptide. Examples of such fusions are well known to those skilled in the art. Similarly, the said polypeptide may he fused to an oligo- histidine tag such as His6 or to an epitope recognised by an antibody such as the well-known Myc tag epitope. Fusions to any variant or derivative of said polypeptide are also included in the scope of the invention. It will be appreciated that fusions (or variants, derivatives or fusions thereof) which retain desirable properties, such as 1-domain binding properties are preferred. It is also particularly preferred if the fusions are ones which are suitable for use in the methods and screening assays described herein.

For example, the fusion may comprise a further portion which confers a desirable feature on the said polypeptide of the invention; for example, the portion may useful in detecting or isolating the polypeptide, or promoting cellular uptake of the polypeptide. The portion may he, for example, a biotin moiety, a radioactive moiety, a fluorescent moiety, for example a small fluorophore or a green fluorescent protein (GFP) fluorophore. as well known to those skilled in the art. I 3

The moiety may he an immunogenic tag. for example a Myc tag. as known to those skilled in the art or may he a lipophilic molecule or polypeptide domain that is capable of promoting cellular uptale oi the polypeptide, as known to those skilled in the art.

By variants' of the polypeptide we include insertions, deletions and substitutions, either conservative or non-conservative. In particular we include variants of the polypeptide where such changes do not substantially alter the activity of the said polypeptide. In particular, we include variants of the polypeptide where such changes do not substantially alter the I-domain binding activity of the said polypeptide.

It will be appreciated that a variant that comprises substantially all of the sequences shown above may he particularly useful. By substantially all' is meant at least six amino acids of the defined sequence, for example at least six consecutive amino acids. More preferably, the variant may comprise at least seven amino acids or, most preferably, all eight of the amino acids of the defined sequence.

By conservative substitutions' is intended combinations such as Gly. Ala; \aL Tie, Leu; Asp, Glu; Asn, Gin; Ser, Thr; Lys, Arg; and Phe, Tyr.

Ii is particularly preferred if the polypeptide variant has an amino acid sequence which has at least 75% identity with the amino acid sequence given above, more preferably at least 87.5%, and most preferably 100% identity with the amino acid sequence given above.

The percent sequence identity between two polypeptides may he determined using suitable computer programs, for example the GAP program of the University of Wisconsin Genetic Computing Group and it will be appreciated that percent identity is calculated in relation to polypeptides whosesequences have been aligned optimally.

The alignment may aiternatizelv he canied out using the ClustaI W' program (as described in Thompson el a/., I 994 A?uc. 4cidRe. 22:46734680) The parameters used may he as follows: Fast paijse alignment parameters: K-tuple(word) size: I, window size; 5. gap penalty; 3. number of top diagonals- 5* Scoring method: x percent.

Multiple alignnieifl parameters* gap Open penalty: 10, gap extension penalty; 0.05.

Scoring matrix: BLOSUM Alternatively the BESTFIT program may be used to determine local sequence alignments The polvpeptjdes of the first aspect of the invention may comprise one or more amino acids which have been modified or derivatised Chemical derivatives of one or more amino acids may he achieved by reaction with a functional side group. Such derivatjsed molecules include, for example, those molecules in which free amino groups have been derivatised to form amine hydroc11orides P-toluene sulphonyl groups, carboxybeiioxy groups, I- hutyloxycarboyJ groups, chloroacetyj groups or fomiyl groups. Free carboxy] groups may be derivatised to form salts, methyl and ethyl esters or other pes of esters and hydrazjdes Free hydroxyl groups may be derivatjsed to form O-acyl or 0-alkyl derivatives Also included as chemical derivatives are those peptides which contain naturally occuning amino acid derivatives of the twenty standard amino acids. For example: 4-l1ydroxypro1i may he substituted for prolinc; 5hydroxylysjne may be substitjted for lysine; 3-methylhisjj may be substituted Ibr histidine; homoscrine max' be substituted for serine and ornithine for lysine.

Derivatives also include peptides containing one or more additions or deletions as long as the requisite activity is maintained Other included modifications are amnidation, amino terminal acylation (e.g. acetylatjon or thiogjycoljc acid amidation). terminal carhoxylamidation (e.g. with ammonia or methylamine). and the like terminal modifications.

II will be further appreciated by persons skilled in the art that peptidornimetic compounds may also he useful. Thus, by polvpeptide or peptide' we include peptidomimetic compounds which are capable of binding to an integrin 1-domain.

The term peptidomimetic' refers to a compound that mimics the conlormation and desirable features of a particular peptide as a therapeutic agent.

For example, the polypeptides of the invention include not only molecules in which amino acid residues are joined by peptide (-CO-Nil-) linkages but also molecules in which the peptide bond is reversed. Such retro- inverso peptidomimetics may he made using methods known in the art, for example such as those described in Meziere et al. (1997) .1. Immunol. 159, 3230-3237. This approach involves making pseudopeptides containing changes involving the backbone, and not the orientation of side chains. Retro-inverse peptides, which contain NH-CO bonds instead of CO-NH peptide bonds, are much more resistant to proteolysis.

In an alternative preferred embodiment, the polypeptide of the invention is a peptidomimetiC compound wherein one or more of the amino acid residues are linked by a -y(Cl-I2NH)- bond in place of the conventional amide linkage.

Similarly, the peptide bond may be dispensed with altogether provided that an appropriate linker moiety which retains the spacing between the carbon atoms of the amino acid residues is used; ii is particularly preferred if the linker moiety has substantially the same charge distribution and substantially the same planarity as a peptide bond.

It will he appreciated that the peptide may conveniently be blocked at its N- or C- terminus so as to help reduce susceptibility to exoproteolytic digestion.

A variety of uncoded or modified amino acids such as D-amiflo acids and Nmethyl amino acids have also been used to modify mammalian peptides. In addition. a presumed hioactive conformation may he stahilised h a covalent modification. such as cyclisation or by incorporation of lactarn or other types of bridges. for example see Veher ci a!.. 1978. Proc. Nail. Acad. Sci. USA 75:2636 and Thursell ci a!.. 1983, Biochem. Biophvs. Res. Comm. 111:166.

A common theme among many of the synthetic strategies has been the introduction of some cyclic moiety into a peptide-based framework. The cyclic moiety restricts the conformational space of the peptide structure and this frequently results in an increased affinity of the peptide for a particular biological receptor. An added advantage of this strategy is that the introduction of a cyclic moiety into a peptide may also result in the peptide having a diminished sensitivity to cellular peptidases.

Thus, preferred polypeptides of the invention comprise terminal cysteine amino acids. Such a polypeptide may exist in a heterodetic cyclic form by disuiphide bond formation of the mercaptide groups in the terminal cysteine amino acids or in a homodetic form by amide peptide bond formation between the terminal amino acids. As indicated above, cyclising small peptides through disuiphide or amide bonds between the N- and Cterminus cysteines may circumvent problems of affinity and half-life sometime observed with linear peptides, by decreasing proteolysis and also increasing the rigidity of the structure, which may yield higher affinity compounds. Polypeptides cyclised by disuiphide bonds have free amino and carboxy-termini which still may be susceptible to proteolytic degradation, while peptides cyclised by formation of an amide bond between the N-terminal amine and C-terminal carhoxyl and hence no longer contain free amino or carboxy termini. Thus, the peptides of the present invention can be linked either by a C-N linkage or a disulphide linkage.

Cyclic peptides may have longer half-lives in serum (see, for example, (Picker and Butcher l992;lluang et al. 1997). Moreover, the side-effects from cyclic peptide therapy are minimal, since anaphylaxis and immune responses against the small peptide occur only rarely (Ohman et al. l995Adgey 1998). In addition, cyclic peptides have been shown to be effective inhibitors in i'ivo of integrins involved in human and animal disease (Jackson et al. 1997:Cuthhertson et al. 1997:Leftovits and Topol 1995;Lefkovits and lopol 1995:Lefkovits and Topol I 995:Goligorsky et al. I 998:Oima e. al. 1 995:Nojrj ci al. 1 994). The present invention is not limited in any way by the method of cvclisation of peptides, hut encompasses peptides whose cyclic structure may he achieved h\ any suitable method of synthesis. Thus, heterodetic linkages may include. hut are not limited to formation via disuiphide. alkylene or suiphide bridges. Methods of synthesis of cyclic homodetic peptides and cyclic heterodetic peptides. including disuiphide. suiphide and alkylene bridges, are disclosed in US 5.643.872. Other examples of cyclisation methods are discussed and disclosed in US 6,008,058.

io Cyclic peptides can also he prepared by incorporation of a type 11' fturn dipeptide (Doyle el al. 1996).

A further approach to the synthesis of cyclic stahilised peptidomimetic compounds is ring-closing metathesis (RCM). This method involves steps of synihesising a peptide precursor and contacting it with an RCM catalyst to yield a conformationally restricted peptide. Suitable peptide precursors may contain two or more unsaturated C-C bonds. The method may be carried out using solid- phase_peptide-synthesiS techniques. In this embodiment, the precursor, which is anchored to a solid support, is contacted with a RCM catalyst and the product is then cleaved from the solid support to yield a conformationally restricted peptide.

Another approach, disclosed by D. H. Rich in I'rolease Inhibitors, Barrett and Selveson, eds., Elsevier (1986), has been to design peptide mimics through the application of the transition state analogue concept in enzyme inhibitor design.

For example, it is known that the secondary alcohol of staline mimics the tetrahedral transition state of the scissile amide bond of the pepsin substrate.

In summary, terminal modifications are useful, as is well known, to reduce susceptibility by proteinase digestion and therefore to prolong the half-life of the peptides in solutions, particularly in biological fluids where proteases may be present. Polypeptide cyclisation is also a useful modification and is preferred because of the stable structures formed by cyclisation and in view of the biological activities observed for cyclic peptides.

Thus. in one embodiment the polypeptide of the first aspect of the invention is linear. However, in a preferred alternative embodiment. the polypeptide is cyclic.

The present invemion also includes compositions comprising pharmaceutically acceptable acid or base addition salts of the polypeptides of the present invention.

The acids which are used to prepare the pharmaceutically acceptable acid addition salts of the aforementioned base compounds useful in this invention are those which form non-toxic acid addition salts, i.e. salts containing pharmacologically acceptable anions, such as the hydrochloride, hydrobromide, hydroiodide. nitrate, sulphate, hisuiphate. phosphate, acid phosphate, acetate, lactate, citrate, acid citrate, tartrate, bitartrate, succinate, maleate, fumarate, gluconate, saccharate, benzoate, methanesulphonate, ethanesuiphonate, benzenesulphonate, p-toluenesulphonate and pamoate [i.e. I,l -methylene- bis-(2- hydroxy-3 naphthoate)] salts, among others.

Pharmaceutically acceptable base addition salts may also be used to produce pharmaceutically acceptable salt forms of the compounds according to the present invention.

The chemical bases that may he used as reagents to prepare pharmaceutically acceptable base salts of the present compounds that are acidic in nature are those that form non-toxic base salts with such compounds. Such non-toxic base salts include, but are not limited to those derived from such pharmacologically acceptable cations such as alkali metal cations (e.g. potassium and sodium) and alkaline earth metal cations (e.g. calcium and magnesium), am.monium or water- soluble amine addition salts such as Nmethylglucamine(meglUmifle), and the lower alkanolammonium and other base salts of pharmaceutically acceptable organic amines. among others.

It will be appreciated by persons skilled in the art that the polypeptides of the invention may exist in monomeric form or in the form of a multimer thereof (e.g. dimer, trimer, tetramer, pentamer, c/c.).

in a preferred embodiment of the first aspect of the invention, there is provided a polypeptide comprising the amino acid sequence of SEQ 1D NO:1. Particularly prelerred is a polypeptide comprising or consisting of the amino acid sequence CGJWFENEWC [SEQ ID NO:51.

In an alternative preferred embodiment of the first aspect of the invention, there is provided a polypeptide comprising the amino acid sequence of SEQ ID NO:2.

Particularly preferred is a polypeptide comprising or consisting of the amino acid sequence CWIWPDSGWC [SEQ ID NO:6}.

in a further alternative preferred embodiment of the first aspect of the invention, there is provided a polypeptide comprising the amino acid sequence of SEQ ID NO:3. Particularly preferred is a polypeptide comprising or consisting of the amino acid sequence CWENWDGWGC [SEQ ID NO:7].

in yet another alternative preferred embodiment of the first aspect of the invention, there is provided a polypeptide comprising the amino acid sequence of SEQ ID NO:4. Particularly preferred is a polypeptide comprising or consisting of the amino acid sequence CWEDGWLHAC [SEQ ID NO:81.

Most preferably. the polypeptide comprising or consisting of the amino acid sequence of SEQ ID NOS: 5, 6, 7, or 8 contains a disuiphide bond between the two cysteine amino acids.

A characterising feature of the polypeptides of the present invention is their ability to bind to an 1-domain of an integrin subunit.

Advantageously, the I-domain is from an integrin which is expressed on chondrocytes, fibrohiasts and/or cancer cells.

Preferably, the integrin is a collagen-binding integrin. More preferably the I- domain is from an integrin selected from the group consisting of ul 1, a21, a10J31 and a113l. Most preferably, the integrin is alOl3i oral 1131 integrin.

Alternatively, the inlegrin may he s lected from the group consisting of aD2, uM132, cxLI32, aX2 and nE137.

The polypeptides of the invention may he capable of binding specifically to the I- domain of a single integrin species or may he capable of binding to the I- domain of a number of different integrin species.

In a preferred embodiment. the polypeptides of the invention are capable of inhibiting a function or property of an integrin. For example. the polypeptide may be capable of inhibiting the binding of collagen to an integrin.

Alternatively, or in addition, the polypeptide is capable of inhibiting the binding of a metzincin to an integrin. By metzincin' we inc]ude matrix metalloproteinases (MMPs), di sintegrin and metalloproteases (ADAMs) and disintegrin and metalloproteases with thrombospondin motifs (ADAMTSs), and pro-forms thereof.

in one embodiment, the metzincin is a disintegrin and metalloprotease (ADAM) (Clark and Parker 2003).

In an alternative embodiment. the metzincin is a disintegrin and metalloprotease with thrombospondin motifs (ADAMTS). For example, see Jones and Riley, 2005, Arthritis Research & Therapy 7(4): 160-9.

Tn a preferred embodiment. the metzincin is a matrix metalloproteinase (MMP) or a pro-form thereof. More preferably, the metailoproteinase is selected from the group consisting of the collagenases MMPI, MMP8 and MMP13, and pro-MMPs thereof.

Most preferably, the metalloproteinase is MMPI3 or pro-MMP13.

Thus, novel polypeptides provided by the present invention may inhibit one or more of the following: (a) MMP binding to the I-domain of an integrin (such as a collagen- binding integrifl) (h) MMP activity (c) MMP expressiom and/or (d) MMP regulation (i.e. control of the rate of MMP activity or expression).

While not being limited by way of theory, it is believed that polypeptides of the invention have efficacy in the prophylactic and therapeutic treatment of diseases and conditions associated with abnormal function of integrins and/or MMPs. As discussed in detail below, the polypeptides of the invention are particularly suited for the treatment of arthritic diseases, inflammatory diseases and cancer.

In determining whether a given polypeptide may be useful in the treatment of such conditions, any of a number of assays, both in vitro and in vivo, are available to the persons skilled in the art.

In vitro assays suitable for identifying and evaluating polypeptides of the invention are described in the Examples below.

Suitable in vivo methods for identifying and evaluating polypeptides of the invention include several well known animal models in mice, rats, rabbits, guinea pigs and dogs. For example, suitable in vivo models for arthritic diseases include: Meniscectorny-indUced osteoarthrilis This model has been described previously in, for example, Sabatini et al (Sabatini et al. 2005) and is applicable to both guinea pigs and rabbits.

In brief, partial medial meniscectomy is performed under anaesthetic on the kiiee of a group of guinea pigs A group of animals undergo sham surgery in which the loint capsule is opened by transection of the medial collateral ligament and the meniscus is left intact. After the operation, the collateral ligament is sutured and the skin iflCiSJOfl closed and disinfected.

All animals are randornl) allocated into different groups: 1) sham operated animals: 2) control menisceciomized animals receiving a vehicle made of a suspension e.g. 0.2% hvdroxypropyl ce1lulose 3) meniscectomized animals treated with polypeptides at. for example. 10 mg/kg (bid) twice per da and 4) meniscectornized animals treated with polypeptides at a range of' concentrations from 1 mg/kg -* 1000mg/kg bid. Oral hid treatment administered by gavage is started I day after surgery and continued ft)r 12 weeks at which time the animals were killed.

During the study. the weight and the food consumption of the guinea pigs is recorded weekly. Animals are killed by exsanguinatiofls under anaesthesia, and the proximal part of the tibias (from the operated knees) are removed and stripped of tendon and musculature. lmmediately after dissection, the joints are placed in 1 0% formalin for further analyses.

Anterior cruciale ligament transection (A CL T-induced osteoai'thritis This model was originally described in detail in dogs by Pond and Nuki (Pond and Nuki 1973) and is well-established as a rabbit model where it is described in, for example, Elmali et al (Elmali et al. 2002).

In brief rabbits of age 7-8 months old are operated on for unilateral anterior cruciate ligament transection (ACLT) to create degenerative changes in the articular cartilage. These rabbits are skeletally mature, with closed epiphyses as seen by roentgenogram. Each animal is anaesthetised and a hind limb is shaved and disinfected. Medial parapatellar incision and arthrotomy are performed. The patella is dislocated laterally and the knee placed in full llexion. The ACL is visualised and transected with a surgical blade. The contralateral nonoperated knee serves as control (sham).

After ACLT. the joint is washed and the capsule and then skin is closed with sutures Alter surgery. the rabbits are returned to cage activity and the limbs are not immohilised.

Four weeks after ACL1'. the rabbits are divided into two groups. The knees of the test group are injected intra-articularly with peptides in the range 0.1-1000mg/kg in a suitable suspension once daily for 2 weeks, and the knees of the control group (nonoperated) are inj ected with the same amount of suspension without peptide. During intra-articular injection, the animals were anaesthetised.

All rabbits are killed 2 weeks after the last injection and histological examination of the cartilage tissue is performed.

Collagenase-induced osieoarthrilis This model has been described in detail previously by van der Kraan el a! (van der Kraan ci al. 1990) and van Osch ci a! (van Osch et al. 1993).

In brief, mice are injected intra-articularly in the right knee with highly purified bacterial collagenase followed by a second injection three days later. The first ligament damage and synovial inflammation occurs one day after the first injection. Mice are then sacrificed after six weeks. Both right and left knee are fixed in formalin for 3 days. followed by decalcification and embedding in paraffin. Both joints are then sectioned for histology staining. The development of osteoarthritis in the joints is visually scored by light microscopy for cartilage lesions in four locations in the joint as well as for the size of osteophyte formation. Digital image analysis of the histological sections is also performed.

Polypeptides to he tested are administrated during the experiments for a four- week period starting approximately at day 8. Peptides will be injected intra- peritoneally (i.p.) in a volume of 0.2 ml at a range of concentration 0. 01 mg to g or more per day, preferably about 0.1 mg to about I g per day.

Administration may be Irom one to four times per day.

Collagen-induced arthritis (CM) This model has been described in detail previously by Holmdahl ci al. (Holmdahl et al. 1990).

Collagen type II (100 microgram) emulsified in adjuvani is injected subcutaneously (s.c.) in a volume of 0.1 ml. Thirty-five days after the first injection the mice are boosted with an additional injection of half the amount of collagen.

The clinical signs of arthritis are scored using a scoring system where every io affected finger or knuckles gets 1 point and ankle 5 points (maximum of 60 points).

Mice are treated i.p. with test polypeptides at four occasions; 1, 5, 9 and 13 days after antigen-injection. Polypeptides are injected in a volume of 0.2 ml at a range of concentration 0.01 mg to lOg or more per day, preferably about 0.1 mg to about I g per day. Administration may be from one to four times per day.

A nzigcn-induced arthritis (AM) This model has been described in detail previously by Brackertz ci al. (Brackertz etal. 1977).

Mice are sensitised by injections of methylated bovine serum albumin (mBSA).

An acute arthritis reaction is induced by intra-articular (i.a.) injection of 60 ig rnBSA. The mice were then followed for 1 5 days. The swelling of the knee is measured at day 3 after i.a. injection, in the very acute phase, and at 10 days using. Mice were sacrificed at day 15 and inflammation, cartilage pathology and osteopliyte formation was scored in histology sections of the knees as above.

Mice are treated i.p. with test polypeptides at four occasions; 1, 5, 9 and 13 days after antigen-injection. Polypeptides are injected in a volume of 0.2 ml at a range of concentration 0.01 mg to 10 g or more per day, preferably about 0.1 mg to about 1 g per day. Administration may he from one to four times per day.

Cancer Models Suitable in i'ivo methods for evaluating the polypeptides of the invention include several well known models (Hirst and Balmain 2004;Kkianna and Hunter 2005) and the means for testing peptide agents fbr anti-cancer activity in such models are well known in the art (Koivunen et al. I 999a:Medina et a!. 2001:Bjorklund et a!. 2004Stefanidakis and Koivunen 2004).

A second aspect of the invention provides an isolated nucleic acid molecule encoding a polypeptide according to the first aspect of the invention.

Thus, the isolated nucleic acid molecule is suitable for expressing a polypeptide of the invention. By suitable for expressing' is meant that the nucleic acid molecule is a polynucleotide that may he translated to form the polypeptide, for example RNA, or that the polynucleotide (which is preferably DNA) encoding the polypeptide of the invention is inserted into an expression vector, such as a plasmid, in proper orientation and correct reading frame fbi expression. The polynucleotide may be linked to the appropriate transcriptional and translational regulatory control nucleotide sequences recognised by any desired host; such controls may be incorporated in the expression vector.

The nucleic acid molecule of the invention may be DNA or RNA, preferably DNA. The nucleic acid molecule may or may not contain introns in the coding sequence preferably the nucleic acid molecule is a cDNA.

The nucleic acid molecule (or polynucleotide) may he expressed in a suitable host to produce a polypeptide of the invention. Thus, the polynucleotide encoding the polypeptide of the invention may be used in accordance with known techniques, appropriately modified in view of the teachings contained herein, to construct an expression vector, which is then used to transform an appropriate host cell for the expression and production of the polypeptide of the invention (for example as described in Sambrook & Russell, supra.) The nucleic acid molecule encoding the polypeptide of the invention may he joined to a wide variety of other polynucleotide sequences for introduction into an appropriate host. The companion polynucleotide will depend UOfl the nature of the host, the manner of the introduction of the polynucleotide into the host, and whether episomal maintenance or integration is desired.

Generally, the nucleic acid molecule is inserted into an expression vector, such as a plasmid. in proper orientation and correct reading frame for expression. If necessary, the nucleic acid molecule may he linked to the appropriate io transcriptional and translational regulatory control nucleotide sequences recognised by the desired host. although such controls are generally available in the expression vector. The vector is then introduced into the host through standard techniques. Generally, not all of the hosts will be transformed by the vector. Therefore, it will be necessary to select for transformed host cells. One selection technique involves incorporating into the expression vector a polynucleotide sequence, with any necessary control elements, that codes for a selectable trait in the transformed cell, such as antibiotic resistance.

Alternatively, the gene for such selectable trait can be on another vector, which is used to co-transform the desired host cell.

Host cells that have been transformed by the recombinant nucleic acid molecule of the invention are then cultured for a sufficient time and under appropriate conditions known to those skilled in the art in view of the teachings disclosed herein to permit the expression of the polypeptide, which can then be recovered.

Many expression systems are known, including bacteria (for example E. coil and Bacillus sub/i/is), yeasts (for example Saccharomyces cerevisiae) , filamentous fungi (for example.4spergiilu.c). plant cells, animal cells and insect cells.

The vectors typically include a prokaryotic replicon, such as the ColE 1 on, for propagation in a prokaryote, even if the vector is to be used for expression in other, non-prokaryotic, cell types. The vectors can also include an appropriate promoter such as a prokaryotic promoter capable of directing the expression (transcription and translation) of the genes in a bacterial host cell, such as F. coli, transformed therewith. Promoter sequences compatible with exempl ar bacterial hosts arc typically provided in plasmid vectors containing convenient restriction sites for insertion of a polynucleotide oithe present invention.

Typical prokaryotic vector plasmids are pUCI 8, pUCI9, pBR322 and pBRS29 available from Biorad Laboratories. (Richmond. CA. USA) and pTrc99A and pKK223-3 available from Pharmacia. Piscataway, NJ, USA.

A typical mammalian cell vector plasmid is pSVL available from Pharmacia, Piscataway, NJ, USA. This vector uses the SV4O late promoter to drive expression of cloned genes, the highest level of expression being found in T antigen-producing cells, such as COS-l cells.

Ai example of an inducible mammalian expression vector is pMSG, also available from Pharmacia. This vector uses the glucocorticoid-inducible promoter of the mouse mammary tumour virus long terminal repeat to drive expression of the cloned gene.

Useful yeast plasmid vectors are pRS4O3-406 and pRS4I3-416 and are generally available from Stratagenc Cloning Systems. La Jolla, CA 92037, USA. Plasmids pRS4O3, pRS4O4. pRS4O5 and pRS406 are Yeast integrating plasmids (YIps) and incorporate the yeast selectable markers HJS3, TRPI, LEU2 and URA3.

Piasmids pRS413-416 are Yeast Centromere plasmids (YCps).

The present invention also relates to a host cell transformed with a polynucleotide vector construct of the present invention. The host cell can he either prokaryotic or eukaryotic. Bacterial cells are preferred prokaryotic host cells and typically are a strain of E. coil such as, for example, the E. coli strains DH5 available from Bethesda Research Laboratories Inc., Bethesda, MD, USA, and RRI available from the American Type Culture Collection (ATCC) of Rockville, MD, USA (No ATCC 31343). Preferred eukaryotic host cells include yeast, insect and mammalian cells, preferably vertebrate cells such as those from a mouse, rat, monkey or human fibrohiastic and kidney cell lines. Yeast host cells include YP} 1499, YP}1500 and YPI1501 which are generally available from Stratagene Cloning Systems. La Jolla. CA 92037. USA. Preferred mammalian host cells include Chinese hamster ovary (CHO) cells available from the ATCC as CCL6I.

NIH Swiss mouse embryo cells NIF1'3T3 available from the ATCC as CRL 1658.

monkey kidney-derived COS-l cells available from the ATCC as CRL 1650 and 293 cells which are human embryonic kidney cells. Preferred insect cells are Sf9 cells which can he transfected with baculovirus expression vectors.

Transformation of appropriate cell hosts with a nucleic acid molecule of the present invention is accomplished by well known methods that typically depend on the type of vector used. With regard to transformation ofprokaryotic host cells, see for example Sambrook & Russell (supra). Transformation of yeast cells is described in numerous reviews, for example see Gietz & Woods (2001) I3iotechniques 30:816-228. With regard to vertebrate cells, reagents useful in transfecting such cells, for example calcium phosphate and DEAE-dextran or liposome formulations, are available from Stratagene Cloning Systems, or Life Technologies Inc., Gaithershurg, MD 20877. USA.

Electroporation is also useful for transforming and/or transfecting cells and is well known in the art for transforming yeast cell, bacterial cells, insect cells and vertebrate cells. For example, many bacterial species may be transformed by the methods described in Luchansky ci al. (1988) Mol. Microbiol. 2:637-646.

Methods for transformation of yeast by electroporation are disclosed in Becker & Guarente (1990) Methods En_yinol. 194:182.

Successfully transformed cells, i.e. cells that contain a nucleic acid molecule of the present invention, can be identified by well known techniques. For example, cells resulting from the introduction of an expression construct of the present invention can be grown to produce the polypeptide of the invention. Cells can he harvested and lysed and their DNA content examined for the presence of the DNA using a method such as that described by Sambrook & Russell (supra.).

Alternatively, the presence of the protein in the supernatant can be detected using antibodies.

In addition to assaying directly for the presence of recombinant DNA. successful transformation can be confirmed h well known immunological methods when the recombinant DNA is capable of directing the expression ol the protein. For example. cells successfully transformed with an expression vector produce proteins displaying appropriate antigenicity. Samples of cells suspected of being transformed are harvested and assayed for the protein using suitable antibodies.

Thus. a third aspect of the invention provides a vector comprising a nucleic acid molecule according to the second aspect of the invention, in a preferred embodiment, the vector is an expression vector.

Advantageously, the vector is suitable for replication in a eukaryotic cell, such as a mammalian cell.

Preferred vectors may be selected from the group consisting of pTWIN, pShuttle, pIJC18, pUC19, pBacPAK, pBR322, pBR329, pTrc99A, pKK223-3, pSVL, pMSG, pRS4O3 to 406 and pRS413 to 416.

A fourth aspect of invention provides a host cell comprising a nucleic acid molecule according to the second aspect of the invention or a vector according to the third aspect of the invention. Conveniently, the cell is a eukaryotic cell, for example a mammalian cell.

Preferably, the host cell is selected from the group consisting of E. coli strain DH5, RR1, ER2566, 0-10 cells (e.g. CCL6I), NIH Swiss mouse embryo cells çNIHI3T3). COS-l cells (e.g. CRL 1650 and 293), Sf cells and yeast cell lines YPI-1499 to 501.

in addition to the transformed host cells themselves, the present invention also contemplates a culture of those cells, preferably a monoclonal (clonally homogeneous) culture, or a culture derived from a monoclonal culture, in a nutrient medium.

A fifth aspect of the invention provides a method for making a polypeptide according to the first aspect of the invention, the method comprising culturing a host cell according to the fourth aspect of the invention which expresses the polypeptide. and isolating the polypeptide therefrom. Methods of cultivating host cells and isolating recombinant proteins arc well known in the art.

A sixth aspect of the invention provides a method for making a polypeptide according to the first aspect of the invention comprising solid phase synthesis of the polypeptide. For example. the polypeptides may be synthesized as described in Solid-Phase Peptide Synthesis (1997) Fields, Abelson & Simon (Eds), Academic Press (ISBN: 0-12-182190-0).

A seventh aspect of the invention provides a pharmaceutical formulation comprising a polypeptide according to the first aspect of the invention in admixture with a pharmaceutically or veterinarily acceptable adjuvant, diluent or carrier.

As used herein. pharmaceutical formulation' means a therapeutically effective formulation according to the invention.

A therapeutically effective amount', or effective amount', or therapeutically effective', as used herein, refers to that amount which provides a therapeutic effect for a given condition and administration regimen. This is a predetermined quantity of active material calculated to produce a desired therapeutic effect in association with the required additive and diluent, i.e. a carrier or administration vehicle. Further, it is intended to mean an amount sufficient to reduce and most preFerably prevent, a clinically significant deficit in the activity, function and response of the host. Alternatively, a therapeutically effective amount is sufficient to cause an improvement in a clinically significant condition in a host.

As is appreciated by those skilled in the art, the amount of a compound may vary depending on its specific activity. Suitable dosage amounts may contain a predetermined quantity of active composition calculated to produce the desired therapeutic effect in association with the required diluent. In the methods and use for manufacture of compositions of the invention, a therapeutically effective amount of the active component is provided. A therapeutically effective amount can he determined by the ordinary skilled medical or veterinary worker based on patient characteristics, such as age, weight. sex. condition, complications other diseases. etc.. as is well known in the art.

Thus, in a preferred embodiment, the present invention provides a pharmaceutical formulation comprising an amount of a polypeptide of the invention effective to reduce the activity, function and/or expression of one or more MMPs, especially of MMP-l3 and/or MMP-l, and a pharmaceutically and biochemically acceptable carrier.

It will he appreciated by persons skilled in the art that the polypeptides of the invention will generally be administered in admixture with a suitable pharmaceutical excipient diluent or carrier selected with regard to the intended route of administration and standard pharmaceutical practice (for example, see Remington: The Science and Practice of Pharmacy, 19th edition, 1995, Ed.

Alfonso Gennaro, Mack Publishing Company, Pennsylvania, USA). Suitable routes of administration are discussed below, and include topical, intravenous, oral, pulmonary nasal, aural, ocular, bladder and CNS delivery.

For example, the polypeplides, molecules and pharmaceutical formulations of the present invention may be delivered using an injectable sustainedrelease drug delivery system, such as a microsphere. These are designed specifically to reduce the frequency of injections. An example of such a system is Nutropin Depot which encapsulates recombinant human growth hormone (rhOH) in biodegradable microspheres that, once injected, release rhGH slowly over a sustained period.

Alternatively, the polypeptides, molecules and pharmaceutical formulations of the present invention can be administered by a surgically implanted device that releases the drug directly to the required site.

Electroporation therapy (EPT) systems can also he employed for the administration of proteins and polypeptides. A device which delivers a pulsed n electric field to cells increases the permeability of the cell membranes to the drug.

resulting in a significant enhancement of intracellular drug delivery.

Proteins and polypeptides can also he delivered by electroincorporation (El). El occurs when small particles of up to 30 microns in diameter on the surface of the skin experience electrical pulses identical or similar to those used in electroporation. In El. these particles are driven through the stratum corneuni and into deeper layers of the skin. The particles can he loaded or coated with drugs or genes or can simply act as bulIets that generate pores in the skin through which the drugs can enter.

An alternative method of protein and polypeptide delivery is the thermosensitive ReGel injectable. Below body temperature, ReGel is an injectable liquid while at body temperature it immediately forms a gel reservoir that slowly erodes and dissolves into known, safe, biodegradable polymers. The active drug is delivered over time as the biopolymers dissolve.

Protein and polypeptide pharmaceuticals can also be delivered orally. One such system employs a natural process for oral uptake of vitamin B12 in the body to co-deliver proteins and polypeptides. By riding the vitamin B12 uptake system.

the protein or polypeptide can move through the intestinal wall. Complexes are produced between vitamin B 12 analogues and the drug that retain both significant affinity for intrinsic factor (IF) in the vitamin BI 2 portion of the complex and significant bioactivity of the drug portion of the complex.

Preferably, the pharmaceutical formulation of the present invention is a unit dosage containing a daily dose or unit, daily sub-dose or an appropriate fraction thereof of the active ingredient.

The polypeptides and pharmaceutical formulations of the present invention will normally he administered orally or by any parenteral route, in the form of a pharmaceutical ibrmulation comprising the active ingredient, optionally in the fhrm of a non-toxic organic, or inorganic, acid, or base, addition salt, in a pharmaceutically acceptable dosage form. Depending upon the disorder and fin D.) patient to be treated. as well as the route of administration, the compositions may he administered at varYing doses.

In human therapy. the polypeplides of the invention can he administered alone hut will generally he administered in admixture with a suitable pharmaceutical excipieni diluent or carrier selected with regard to the intended route of administration and standard pharmaceutical practice.

For example, the compounds, i.e. polypeptides of the invention can he io administered orally, huccally or sublingually in the form of tablets, capsules, ovules, elixirs. solutions or suspensions, which may contain flavouring or colouring agents, for immediate-, delayed- or controlledrelease applications.

The compounds of invention may also he administered via intracavernosal injection.

Such tablets may contain excipients such as microcrystalline cellulose, lactose, sodium citrate, calcium carbonate, dibasic calcium phosphate and glycine, disintegrants such as starch (preferably corn, potato or tapioca starch), sodium starch glycollate, croscarmellose sodium and certain complex silicates, and granulation binders such as polyvinylpyrrolidone. hydroxypropylmethylcellulOse (HPMC), hydroxy-propylcelluloSe (HPC). sucrose, gelatin and acacia.

Additionally, lubricating agents such as magnesium stearate, stearic acid, glyceryl hehenate and talc may be included.

Solid compositions of a similar type may also be employed as fillers in gelatin capsules. Preferred excipients in this regard include lactose, starch, cellulose, milk sugar or high molecular weight polyethylene glycols. For aqueous suspensions and/or elixirs. the compounds of the invention may be combined with various sweetening or flavouring agents, colouring matter or dyes, with emulsifying and/or suspending agents and with diluents such as water, ethanol, propylene glycol and glycerin, and combinations thereof.

The compounds of the invention can also he administered parenterally, for example, intravenously, intra-articularly, intra-arterially, intraperitoneally, intra- n thecally. intraventricularly. intrasternally. intracranial lv. intra- muscularly or subcutaneously. or they may he administered liv infusion techniques. The are best used in the form of a sterile aqueous solution which may contain other substances. for example. enough salts or glucose to make the solution isotonic with blood. The aqueous solutions should he suitably bufFered (preferably to a pH of from 3 to 9), if necessary. The preparation of suitable parenteral formulations under sterile conditions is readily accomplished by standard pharmaceutical techniques well known to those skilled in the art.

Formulations suitable for parenteral administration include aqueous and non- aqueous sterile injection solutions which may contain anti-oxidants, buffers, hacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient; and aqueous and non-aqueous sterile suspensions which may include suspending agents and thickening agents. The formulations may be presented in unit-dose or multi-dose containers, for example sealed ampoules and vials, and may he stored in a freeze-dried (lyophilised) condition requiring only the addition of the sterile liquid carrier, for example water for injections, immediately prior to use. Extemporaneous injection solutions and suspensions may he prepared from sterile powders. granules and tablets of the kind previously described.

For oral and parenteral administration to human patients. the daily dosage level of the compounds of the invention will usually be from 1 to 1000 mg per adult (i.e. from about 0.015 to 15 mg/kg), administered in single or divided doses.

Thus, for example, the tablets or capsules of the compound of the invention may contain from I mg to 1000 mg of active compound for administration singly or two or more at a time, as appropriate. The physician in any event will determine the actual dosage which will he most suitable for any individual patient and it will vary with the age, weight and response of the particular patient. The above dosages are merely exemplary of the average case. There can, of course, be individual instances where higher or lower dosage ranges are merited and such are within the scope of this invention. n

The compounds of the invention can also be administered intranasally or by inhalation and are conveniently delivered in the form of a dry powder inhaler or an aerosol spray presentation from a pressurised container, pump, spray or nehuliser with the use of a suitable propellant. e.g. dichlorodifluoroniethane, tn ch I orofluoromethane. di chi orotetrafi uoro-ethane, a hydrofluoroal kane such as 1,1,1,2-tetrafluoroethane (HFA 134A3 or 1,1,1.2,3,33-heptafluoropropane (HFA 227EA3), carbon dioxide or other suitable gas. in the case of a pressurised aerosol, the dosage unit may he determined by providing a valve to deliver a metered amount. The pressunised container, pump, spray or nebuliser may io contain a solution or suspension of the active compound, e.g. using a mixture of ethanol and the propellant as the solvent, which may additionally contain a lubricant, e.g. sorbitan trioleate. Capsules and cartridges (made, for example, from gelatin) for use in an inhaler or insufflator may he formulated to contain a powder mix of a compound of the invention and a suitable powder base such as lactose or starch.

Aerosol or dry powder formulations are preferably arranged so that each metered dose or pufF contains at least I mg of a compound of the invention for delivery to the patient. It will he appreciated that the overall daily dose with an aerosol will vary from patient to patient, and may be administered in a single dose or, more usually, in divided doses throughout the day.

Alternatively, the compounds of the invention can be administered in the form of a suppository or pessary, or they may he applied topically in the form of a lotion, solution, cream, ointment or dusting powder. The compounds of the invention may also he transderrnally administered, for example, by the use of a skin patch.

They may also be administered by the ocular route.

For ophthalmic use, the compounds of the invention can he formulated as micronised suspensions in isotonic pH adjusted, sterile saline, or, preferably, as soIUtiOI1S in isotonic, pH adjusted, sterile saline, optionally in combination with a preservative such as a beazylalkonium chloride. Alternatively, they may be formulated in an ointment such as petrolatum.

For application topicafly to the skin, the compounds of the invention can he formulated as a suitable ointment containing the active compound suspended or dissolved in. for example. a mixture with one or more of the following: mineral oil, liquid petrolatum. white petrolaturn. propylene glycol. polyoxyethylene polyoxypropylene compound, emulsifying wax and water. Alternatively, they can be formulated as a suitable lotion or cream, suspended or dissolved in. for example. a mixture of one or more of the following: mineral oil, sorhitan monostearate. a polyethylene glvcol, liquid paraffin, polysorbate 60, cetyl esters wax, cetearyl alcohol, 2-octyldodecanol, henzyl alcohol and water.

Formulations suitable for topical administration in the mouth include lozenges comprising the active ingredient in a flavoured basis, usually sucrose and acacia or tragacanth; pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia and mouth-washes comprising the active ingredient in a suitable liquid carrier.

Generally, in humans, oral or parenteral administration of the compounds of the invention is the preferred route, being the most convenient.

It will be appreciated by persons skilled in the art that such an effective amount of the polypeptide or formulation thereof may he delivered as a single bolus dose (i.e. acute administration) or, more preferably, as a series of doses over time (i.e. chronic administration).

It will be further appreciated by persons skilled in the art that the polypeptides and pharmaceutical formulations of the present invention have utility in both the medical and veterinary fields. Thus, the methods of the invention may be used in the treatment of both human and non-human animals (such as horses, dogs and cats). Preferably. however, the patient is human.

For veterinary use, a compound of the invention is administered as a suitably acceptable lormulation in accordance with normal veterinary practice and the veterinary surgeon will determine the dosing regimen and route of administration which will be most appropriate for a particular animal.

in an eighth aspect of the invention, there is provided a polypeptide according to the first aspect of the invention or a pharmaceutical formulation according to the seventh aspect of the invention for use in medicine.

An ninth aspect of the invention provides the use of a polypeptide according to the first aspect of the invention or a pharmaceutical formulation according to the seventh aspect of the invention in the preparation of a medicament for treating a disease or condition capable of being treated by an agent which modulates the fimction of an integrin and/or a metzincin (e.g. an MMP, ADAM or ADAMTS).

Thus, the polypeptides and formulations of the present invention may be used to treat patients or subjects who suffer from or are at risk of suffering from the following conditions or disease states; arthritic diseases (including osteoarthritis, rheumatoid arthritis and reactive arthritis), inflammatory conditions (including atherosclerosis and multiple sclerosis), cancer and metastasis progression (including melanoma), oral diseases (including periodontitis; see Sorsa et al (2004) Oral Diseases 10:31 1-31 8), osteoporosis, tissue remodeling, angiogenesis, angiogenesis, lung diseases (bronchiectasis and chronic obstructive pulmonary diseases and other lung diseases), wounds, burns, fractures, lesions and ulcers.

in a preferred embodiment of the ninth aspect of the invention, the disease or condition capable of being treated by an agent which modulates the function of an integrin and/or a metzincin (e.g. a matrix metalloproteinase) is an arthritic disease or an inflammatory disease or condition.

By arthritic disease' we include osteoarthritis, rheumatoid arthritis and reactive arthritis.

By inflammatory disease or condition' we include Alzheimer' s disease, psoriasis, asthma, atherosclerosis, sarcoidosis, atopic dermatitis, systemic lupus erythema1osus hullous pernphigoid, type I diabetes mellitus, chronic obstructive pulmonary disease, ulcerative colitis, gout, Helicohacler pylon gastritis*, inflammatory howl disease, Hepatitis C, ischaemia-reperfusion injurY, multiple sclerosis. Neisserial or pncumococcal meningitis*, tuberculosis and periodontitis (* indicated diseases of infectious origin in which the host inflammatory reaction is as important to its pathology as the microbial infection itself).

Most preferably. the disease or condition is osteoarthritis or rheumatoid arthritis.

in an alternative preferred embodiment of the ninth aspect of the invention, the disease or condition capable of being treated by an agent which modulates the function of an integrin and/or a metzincin is a proliferative disease (i.e. cancer).

For example. proliferative disease may be selected from the group consisting of sarcomas (e.g. bone and connective tissues including synovium), carcinomas (e.g. mammary. pancreatic, colon, squamous cell. adeno, large cell), myelornas, leukaemias, lymphomas (e.g. flodgkins disease, non-Hodgkins lymphomas, T- cell lymphomas). melanoma and small cell lung cancer.

A tenth aspect of the invention provides a method of treating a patient in need of modulation of the *function of an integrin and/or a metzincin (e.g. an MMP, ADAM or ADAMTS), the method comprising administering to the patient an effective amount of a polypeptide according to the first aspect of the invention or a pharmaceutical formulation according to the seventh aspect of the invention.

By treatment' we include both therapeutic and prophylactic treatment of the patient. The term prophylactic' is used to encompass the use of a polypeptide or fhrmulation described herein which either prevents or reduces the likelihood of a condition or disease state in a patient or subject.

As discussed above, the term effective amount' is used herein to describe concentrations or amounts of compounds according to the present invention which may be used to produce a favourable change in a disease or condition treated, whether that change is a remission, a favourable physiological result, a reversal or attenuation of a disease state or condition treated, the prevention or the reduction in the likelihood of a condition or disease state occurring, depending upon the disease or condition treated. Where polypeptides ol the invention are 2' used in combination, each of the polvpeptides may he used in an effective amount. wherein an effective amount ma\ include a synergistic amount.

Preferably, the method of the tenth aspect of the invention comprises treating a patient suffering from an arthritic disease. an inflammatory disease or condition and/or cancer (see above).

It will he appreciated by persons skilled in the art that the polypeptides and formulations of the invention may he co-administered in combination with one or io more known or conventional agents for the treatment of the particular disease or condition. By co-administer' it is meant that the present polypeptides are administered to a patient such that the polypeptides as well as the co-administered compound may be found in the patient's body (e.g. in the bloodstream) at the same time, regardless of when the compounds are actually administered, including simultaneously.

For example, where the patient is suffering from an arthritic disease and/or an inflammatory disease or condition, the polypeptide or formulation of the invention comprises may be administered in combination with one or more conventiOnal anti-inflammatory agents. including corticosteroids, non-steroidal anti-inflammatory drugs (N SAIDs), disease modifying anti-rheumatic drugs (DMARDs) and antibody therapies (e.g. anti-TNFa antibodies). Such combination therapies are disclosed in US 5,780,426.

Likewise, where the patient is suffering from cancer, such as cancer, the polypeptide or formulation of the invention comprises may he administered in combination with one or more conventional anti-cancer agents, including cytotoxic drugs (e.g. alkylating drugs, cytotoxic antibiotics, antimetaholites, ymca alkaloids and etoposide), drugs affecting the immune response (e.g. antiproliferati ye immunosuppressantS, corti costeroi ds and other imrn unosuppressants, rituximab and al emtuzurnah), and sex hormones and hormone antagonists (e.g. estrogens, progestogens, androgens).

it will also he appreciated by skilled persons that the polypeptides and formulations of the invention max' he co-administered in combination with one or more agents that inhibit the function o.f integrins and/or MMPs.

In an eleventh aspect of the invention, there is provided the use of a polypeptide according to the first aspect of the invention to detect the presence of an integrin in a sample.

Thus, the present invention provides the use of a polypeptide of the invention in the diagnosis of a disease or condition associated with abnormal level of an integrin (such as osteoarthritis, rheumatoid arthritis, or cancer).

It will be appreciated by persons skilled in the art that the polypeptide of the invention may he used to detect the presence of an integrin in a sample in vitro or in vivo. Conveniently, the polypeptide of the invention comprises a detectable moiety (i.e. label) or indicating means, such as a fluorescent or radioactive label.

As used herein, the terms lahel' and indicating means' refer to single atoms and molecules that are either directly or indirectly involved in the production of a detectable signal to indicate the presence of the polypeptide. Any label or indicating means can he linked to or incorporated in a polypeptide of the present invention. or used separately, and those atoms or molecules can be used alone or in conjunction with additional reagents. Such labels are themselves well known in clinical diagnostic chemistry and the linking of these labels to polypeptides and proteins is well known in the art. Examples of labels for polypeptides include, hut arc not limited to, the following: radioisotopes (e.g. 3H, 4C, 3S, 123j 1251 131j 99Tc, 11n, 9 Y, 88Re), radionuclides (such as carbon-li, fluorine-18 or copper- 64.), fluorescent labels (e.g. FITC, rhodamine, lanthanide phosphors, carbocyanine), enzymatic labels (e.g. horseradish peroxi dase, 3-gal actosidase, luciferase, alkaline phosphatase), . chemiluminescent, biotinyl groups.

predetermined polypeptide epitopes recognised by a secondary reporter (e.g. leucine zipper pair sequences, binding sites for secondary antibodies, metal binding domains, cpitope tags). In some embodiments, labels arc attached by spacer arms of various lengths to reduce potential slearic hindrance.

The technique of labelling polypeptides and their use in diagnostics is well known to the skilled man in the art (Li and Anderson 2003:I-laubncr ci al. 2003). Means br performing peptide-hased imaging, including suitable labels and linkers, are also known in the art. for example see WO 03/006491 to Amersham Health A/S: EP 1 272 507 Bi to Amersham Health A/S. and (Medina et al. 2005Medina ci al. 2005).

In a preferred embodiment, the sample is selected from the group consisting of io tissue samples (e.g cartilage, bone, synoviurn. atherosclerotic plaque, or tumour samples), synovial fluid. blood samples and plasma samples.

More preferably, the sample is a connective tissue sample.

Most prebèrably. the sample is a cartilage tissue sample, synovium sample or tumour sample Advantageously, the integrin is detected in i'ivo by Xray, MR., ultrasound, scintigraphy, PET, SPECT, electrical impedance, light or magnetometric imaging modalities.

A twelve aspect of the invention provides a method for diagnosing in a patient a disease or condition associated with abnormal amount and/or function of an integrin, the method comprising: (a) providing a sample from the patient to be tested; (b) contacting the sample with a polypeptide of the invention under conditions which permit the binding ofthe polypeptide to an integrin (if present in the sample); and (c) detecting the binding of the polypeptide to an integrin (if present in the sample) wherein the amount of polvpcptide bound to the sample from the patient to he tested provides an indication of the amount and/or function of integrin in the sample.

Preferably. the method further comprises step (d) of comparing the amount of polypeptide bound to the sample from the patient to be tested with the amount of the polypeptide bound to a sample from a healthy individual (or population of individuals) In a preferred embodiment of the eleventh and twelfth aspects of the invention, the integrin is a collagen-binding integrin, for example alOlil or all 131.

Thus, in a preferred embodiment the method comprises (a) contacting a tissue sample suspected of harbouring the disease to he diagnosed with a polypeptide of the invention; (b) determining the level of binding of the polypeptide to an integrin a10131 or al 1131 in the tissue sample; and (c) comparing the level of binding in (b) to a standard level of binding of said polypeptide to a cell extract from a healthy tissue sample.

An altered level of binding of the polypeptide to the diseased' tissue sample may indicate the likely presence of a chondrocyte-rnediatCd disease state, a fibrohiast- mediated state, an osteoclast or osteoblast-mediated disease state, a smooth- muscle cell disease state, a macrophage-mediated disease state, a stern cell- mediated disease state or cancerous cells.

Such a method may also he used to detect diseases in which the integrin levels are changed, such as OA, RA, atherosclerosis and cancer.

It will he appreciated by skilled persons that the diagnostic methods of the present invention may he of a competitive or non-competitive nature, as those terms are understood in the art.

A thirteenth aspect of this invention provides a kit for performing a method according to the twelfth aspect of the invention comprising a polypeptide of the invention.

Preferably. the diagnostic kit comprises, in an amount sufficient for at least one assay. a peptide of this invention as a separately packaged reagent. Instructions for use of the packaged reagent are also typically included. Such instructions typically include a tangible expression describing the reagent concentration or at least one assay method parameter such as the relative amounts of reagent and sample to he mixed, maintenance time periods for reagent/sample admixtures, temperature, buffer conditions and the like.

A fourteenth aspect of the invention provides the use of a polypeptide according to the first aspect of the invention to improve targeting of liposomes to target cells (useful in drug delivery and for delivery of gene expression vectors). Such uses are well known in the art and described in detail in WO 02/076491, Koivurien et al (Koivunen et al. 1999a)(Medina et al. 2001) and (Medina et al. 2004).

A fifteenth aspect of the invention provides a polypeptide complex comprising a polypeptide according to the first aspect of the invention and an integrin subunit, or fragment thereof comprising an I-domain. Such complexes are of particular use in molecular modelling and drug design.

Preferably. the complex is in crystalline form.

The novel peptides developed are useful lead compounds to design peptidomimetics and to develop more selective inhibitors for MMPs. Methods for using the peptides of the invention co-crystallised with their ligand for drug design are well known in the art and described in (Blundell et al. 2002;Hruby 2002Kitchen et al. 2004;Williams et al. 2005) A sixteenth aspect of the invention provides a method of making a complex according to the fifteenth aspect of the invention comprising a peptide of the invention and its ligand. For example. methods for the co-crystallisation of peptides and antibody fragments with collagen-binding inlegrins are described in the literature (Karpusas et al. 2003):(Emsley el al. 2004).

A seventeenth aspect of the invention provides a method br identi,'ing a candidate compound for the treatment of a disease or condition capable of' being treated by an agent which modulates the function of an integrin and/or a metzincin the method comprising determining, if a compound to he tested alters or interferes (e.g. competes) with the binding of a polypeptide according to the first io aspect of the invention to an integrin I-domain.

The ability of candidate compounds to bind to an integrin and/or MMP may be assessed by a competitive binding assay. Candidate compounds may he peptide or non-peptide compounds. Binding to an integrin and/or MMP is quantified by the ability to displace a peptide of the present invention, including the peptides of the present invention. The displaced peptide can be assayed by a number of techniques. For example, radiolahelled peptide can be synthesized using commercial available radiolabelled amino acids precursors. Peptides radiolahelled with H. "C or S can be quantified by routine liquid scintillation techniques.

Alternatively, a fluorescent labelled peptide can be synthesized. For example, lysine can be inserted in a non-critical position and labelled with fluoroescein isothiocyanate (FITC). In addition to FITC, the peptide may be labelled with any suitable fiuorophore. A carboxy fluoroescein derivative of one or more of the peptides of the present invention may be prepared. Alternatively, peptides cyclised with an amide peptide linkage have free sulfiiydryl groups available for linkage to fluorescent compounds such as thiocyanates. Separation of bound from unbound peptide and quantitation of displaced peptide can he performed by routine techniques known to one of skill in the art.

This embodiment of the invention is not limited by the method used to quanti' the displaced peptide, and it will be appreciated that any suitable analytical technique may he used.

The candidate compound may be a drug-like compound or lead compound for the development ol a drug-like compound for each of the above methods of identifying a compound. it will be appreciated that the said methods may be useful as screening assays in the development of pharmaceutical compounds or drugs. as well known to those skilled in the art.

The term drug-like compound is well known to those skilled in the art. and may include the meaning of a compound that has characteristics that may make it suitable for use in medicine, for example as the active ingredient in a medicament. Thus. for example, a drug-like compound may he a molecule that may be synthesized by the techniques of organic chemistry, less preferably by techniques of molecular biology or biochemistry, and is preferably a small molecule, which may he of less than 5000 daltons molecular weight. A drug-like compound may additionally exhibit features of selective interaction with a particular protein or proteins and be bioavailahle and/or able to penetrate cellular membranes, hut it will he appreciated that these features are not essential.

The term lcad compound' is similarly well known to those skilled in the art, and may include the meaning that the compound, whilst not itself suitable for use as a drug (for example because it is only weakly potent against its intended target, non-selective in its action, unstable, difficult to synthesize or has poor bioavailability) may provide a starting-point for the design of other compounds that may have more desirable characteristics.

It will be appreciated that the compound may he a polypeptide that is capable of competing with the polypeptide of the invention for binding to an integrin. Thus, it will he appreciated that a screening method as described above may be useful in identifying polypeptides that may also interact with an integrin. for example a receptor molecule.

It will be further appreciated that it will be desirable to identify compounds that may modulate the activity of the polypeptide(s) in vivo. Thus, it will be understood that reagents and conditions used in the method may be chosen such that the interactions between the said polypeptide and the integrin are substantially the same as between the said polypeptide or a fragment thereof and a naturally occurring interacting polypeptide in vivo.

The drug-likc compounds and lead compounds identified in the screening assays of the invention are suitably tested in further screens to determine their potential usefulness in treating arthritic diseases, inflammatory conditions.

proliferative disorders, etc. In a preferred embodiment of the seventeenth aspect of the invention, the method io further comprises the step of mixing the compound thus identified with a pharmaceutically acceptable carrier.

An eighteenth aspect of the invention provides a kit for performing a method according to the seventeenth aspect of the invention comprising a polypeptide of the invention and an integrin subunit or fragment comprising or consisting of an 1-domain thereof, or means for producing the same.

A nineteenth aspect of the invention provides a compound identified by a method according to the seventeenth aspect of the invention.

A twentieth aspect of the invention provides a compound according to the nineteenth aspect of the invention for use in medicine.

A twenty-first aspect of the invention provides a pharmaceutical formulation compriSing a compound according to the nineteenth aspect of the invention in admixture with a pharmaceutically or veterinarily acceptable adjuvant, diluent or carrier.

Preferred aspects of the invention are described in the following nonlimiting examples. with reference to the following figures: Figure 1. Stereoview (above) and tube drawing (below) of predicted structure of (A) peptide p6l7 (corresponding to the cyclic form of SEQ ID NO:6) and (B) peptide p6lS (corresponding to the cyclic form of SEQ ID NO:5).

Figure 2. Binding of phageAl (expressing the cyclic peptide CCI WFENEWC) and phageA2 (expressing the cyclic peptide CWIWPDSGWC) to imniobilised integrin I-domains (al, al() and all), to GST-control or to BSA. Bound phages were detected using an anti-M13 antibody.

Figure 3. Binding ofphageAl (A) and phageA2 (B) to immobilised integrin a II I-domain in the presence of synthetic cyclic peptides (p617, p61 8 and control peptide (ctrl-pep). Binding of phageA2 (C) to integrin a 10 Idomain in the presence of synthetic cyclic peptides. Bound phages were detected using an anti- M13 antibody.

Figure 4. (A) Binding of phageAl to an anti-al I coated surface with or without cell extract (CE) from integrin all transfeeted cells. Blocking by synthetic peptide p618 and p617. Bound phages were detected using an anti-M13 antibody.

Figure 5. (A) Solid-phase interaction to collagen VI. of recombinant GSTtagged I-domains (al, alO and all and (1ST-control) in the presence or absence of EDTA. (B) I-domain interaction to collagen VI in the presence of synthetic cyclic peptides (p617, p61 8 or control-peptide). (C) Titration of the p618 effect on I- domain interaction to collagen VI. (**: p<O.Ol, ***: p<0.OOI). Bound 1- domain was detected using an anti-GST antibody.

F'igure 6. (A) Integrin al 0 and all I-domain binding to pro-MMP1 3. Titration of I-domain (cxl 0, u.l 1 and (iST-control) (20-320nM) with a fixed concentration of pro-MMPI3 (33 nM). (B) Binding between all 1domain and pro-MMP13 in the presence or absence of EDTA. Controls include a C ST-control. a control without 1-domain and a control without pro-MMPI3. Black bars represent anti-his coating and grey bars represent BSA coating. (C) cfl 1 1-domain and GST- control interaction to pro-MMPI 3 or active MM.P1 3. In figures A-C wells are coated with anti-his antibody that hind the C-terminally his-tagged pro-MMP1 3.

Interacting 1-domain is detected using an anti-GST antibody. (D) 1-domain (a M, alO. (xl 1 and GST-control) solid-phase interaction to pro-MMP9. Wells were pre- coated with pro-MMP9 and hound GST-fusion was detected using an anti-GST antibody. Values are corrected for unspecific binding to BS.A.

Figure 7. Interaction between pro-MMP-13 and the 1-domains of integrin alO (A) and integrin all (B) in the presence of peptides (p6] 7. p618, or the control peptide (ctrl-pep)). Wells are coated with anti-his antibody that bind the C- terminally his-tagged pro-MMP1 3. Interacting 1-domain (or GST-control) is detected using an anti-GST antibody. One-way ANOVA followed by Tukey's multiple comparison test, N6 ((B): data from two independent experiments).

(***:p<O()()l) Figure 8. Interaction between pro-MMP-13 and whole integrin alOfli in the absence or presence of peptides (p6] 7, p61 8 or the control peptide (ctrl-pep).

Cell-extract from ul 0 transfected HEK 293-cells was preincubated for 1 0 minutes with peptides. After pre-incubation his-tagged proMMP-l 3 was added and incubation was continued fcr an additional lh. The samples were added to anti- His coated wells and detection was carried out using a polyclonal anti- alO antibody.

Figure 9. Human chondrocytes cultured in high-density monolayer induce MMP- activity after 2 days of interleukin-1B (IL-1B) stimulation. Dexamethasone (Dex) inhibits the IL-lB induced MMP-activily. MMP production was measured in the APMA activated culture supernatants using a quenched fluorescence assay.

Figure 10. Effects of peptides (p617, p6] 8 and control-peptide (contr.)) and dexamethasone (Dex) on IL-Ill induced total MMP activity in cell culture supernatants of human chondrocytes. MMP-activity measured in AP.MA activated culture supematants using a quenched-fluorescence assay. Kruskal- Wallis test Ibliowed by Dunns multiple comparison test, N=6. (***: p<O. OOl).

Figure 11. Effect of peptides p6l7 and p618 on IL-hi induced mRNA expression of (A) MMPJ. (B) AIMPJ3 and (C) MMPJ4 from both alO (Adeno5alO) and all (Adeno5-all) Adeno5 transfected human chondrocytes. Measured using real-time RT-PCR and MMP-speciflc primers. Values relative to a housekeeping gene (GAPI)I-I). ([)) Effect of peptides p617 and p6l S on IL-lB induced total MMP activity in the supernatants of transfected compared to un-transfected human chondrocytes. MMP-activity measured in APMA activated culture supernatants using a quenched-fluorescence assay. Dcx: Dexaniethasone.

EXAMPLES

Example 1

Objective The objective with this example was to present a model structure of the peptides of the invention.

io Methods for Peptide Modelling Model structures of the peptides were created by means of molecular dynamics simulations. The peptides were cyclised prior to simulation and built such that residues within the ring adopt a 3-tum conformation. Molecular dynamics simulations were performed without solvent using the AMBER 7 FF02 force field (Ponder and Case 2003). The dielectric constant was set to 80 and the temperature was 300 K. Simulations were sampled with a time step of I fs for a total length of 1 ns for exemplary polypeptide of the invention P617' (corresponding to the cyclic form of SEQ ID NO:6) and for 80 ps for exemplary polypeptide of the invention P618' (corresponding to the cyclic form of SEQ ID NO:5). The final structure of each simulation was used for the drawings and is represented in Figure 1.

Results The results of the molecular dynamics simulations in figure 1 show predicted stable 3-dimentional structures of peptides p617 (CWIWPDSGWC) and p618 (CGTWFENEWC).

Example 2

Ohj ective The objective with this example was to demonstrate binding of 1-domain selected phages to different recombinant 1-domains by phage ELISA.

Materials and methods The integrin al (Genbank acc#: NP 852478 amino acids faa): 167-364 (CST- LEA), i1() (Genbank acc#: NP 003628 aa: 162-359 (CPT-LEG)) and oil (Genbank acc#: NP 036343 aa: 159-354 (CQT-LEG)) 1-domains were cloned in fusion with a N-terminal GST-tag in the pCEP4-vector (Invitrogen). The constructs also contain a c-myc tag (sequence: MEQKLISEEDLGKL) located between the GST-tag arid the 1-domain. HEK-293 cells were transfected with the expression constructs using GenePORTERTMTransfection Reagent (Gene Therapy Systems, San Diego, CA, USA) according to the manufacturers recommendations and stably transfected cells were selected using 260 mM Hygromycin B (Ducheta, Haarlem, the Netherlands). HEK-293 cells stably expressing GST-al I-domain, GST-al 0 1-domain, GST-al I I-domain or GST- only (GST-control) were maintained in DMEM:F12 medium (GTBCO BRL) supplemented with 260 mM Hygromycin B (Ducheta, Haarlem, the Netherlands), U/mI penicillin / 50 jig/mI streptomycin (PEST)(GIBCO BRL) and 10 % foetal bovine serum (FBS) (GIBCO BRL) until confluent. Before purification of recombinant secreted proteins, the medium was replaced with DMEM:F12 supplemented with 130 mM Hygromycin B and 50 U/mI PEST. After 48h the culture supernatants were harvested and Complete EDTA-free protease inhibitor (Roche, Mannheim, Germany) (1:200) was added. After dialysis against PBS, 5mM di-thio-threitol (DTT) was added and the supernatants were rotated at 4 C for 24h with GST-sepharose beads 4 fast flow (Arnersham Biosciences, Uppsala, Sweden). The GST-sepharose beads were collected on chromatography columns, washed and bound proteins were eluted with 40mM Tris / HCI (pH 8.0), 1 50 mM NaC1, 5 mM DTT and, 10 mM glutathione. The eluted samples were concentrated and dialysed against PBS in Amicon Ultra-4, 1 0 000 NWML filter tubes (Millipore, Moisheim, France) following the rnanufacturers instructions. Size and quality of the purified proteins were analysed on SDS-PAGE and samples were aliquoted and stored at -80 C for later use.

1-domain binding phages were selected From a phage library expressing 610 amino acid long cyclic peptides (C-X(>10-C) using panning as described elsewhere (Koivunen et al. 1994;Koivunen et a!. 1999b). Briefly described, the phage libraries were pre-selected in tris-huffered-saline with 0.05% Tween-20 (TBS-T) for 2h at room temperature on 96-well plates pre-coated with UST-control (20 tg/ml) and blocked with 2 % bovine serum albumin (BSA). To select I- domain binding phages the un-bound phages were transferred to 96-well plates, pre-coated with recombinant GST-al 0 (20.tg/m1) or l 1 (20 tg/ml) 1-domains and blocked for ih at room temperature with tris-buffered- saline (TBS) + 1% BSA + 1mM Mg21 After shake-incubation for 2h at the wells were washed for 10 x 1 minute with TBS + 1mM Mg + 0.5 % Tween 20 and incubated with 100 il elution hufièr (0.IM glycine / HCI with 0.1% BSA and 0.05% phenol-red, pH 2.2) for 10 minutes with gentle shaking. The eluate was neutralised in IM Tris/HC1 buffer (pH 9.0). Eluted phages were amplified in starved K9lkan bacteria, the amplified phages were precipitated using polyethylene glycol and redissolved in TBS as described (Smith and Scott 1993). The selected and amplified phages were subjected to a second and third round of panning as described above. Selected individual phages were sequenced using BigDye (Applied BioSystems, UK) and the primers A and B (primer A: TAATACGACTCACTATAGGGCAAGCTGATAAACCGATACT [SEQ ID NO:91 and B: CCCTCATAGTTAGCGTAACGATCT [SEQ ID NO:10] (15 prnol / ml) for 35 cycles of the following conditions; 95 C - 5 mm, 92 C - 20 see, 60 C - 20 see, 72 C 1 mm,, followed by 72 C for 4 minutes.

96-well MaxiSorb plates (Nunc) was coated with 1-domain-GST fusions or the GST-control (2nM) at 4 C for 20h. Wells were blocked with TBS-T+1% BSA for I h at room temperature. After blocking plates were washed three times with phosphate-buffered-saline with 0.05% Tween-20 (PBS-T) and incubated (shaking) for lh at room temperature with 1x109 plaque forming units (pfu) of phages. Plates were washed three times with PBS-T and bound phages detected with HRP-anti-M13 (1:3000 in TBS-T+0.1 4 BSA) (Calbiochem) staining for lh at room temperature. After staining plates were washed three times with PBS-I and developed using SIGMA-FASTTM ophenylenediamine dihydrachioride tablets (SIGMA-Aldrich, St Louis, MO, USA) according to manufactures instructions.

Results The results in figure 2 demonstrate that phageA I expressing the cyclic peptide CGIWFENEWC [SEQ ID NO:5] and A2 expressing the cyclic peptide CWIWPDSGWC [SEQ ID NO:6] in fusion with the pill phage protein, bind immobilised integrin 1-domains in a solid-phase assay. PhageAl, expressing the p61 8 peptide, binds al and all equally well but not alO. PhageA2 expressing the p617 peptide binds to al, all and weaker to alO. Neither phageAl nor phageA2 bind to the GST control or to BSA coated wells.

Example 3

Objective The objective with this example was to demonstrate that synthetic cyclic peptides with sequences derived from the selected phages could inhibit the phage interaction to I-domains.

Materials and methods 96-well MaxiSorb plates (Nunc) were coated with l-domain-GSI fusions (2nM) or the GST control (2nM) (see example 2) at 4 C for 20h. Wells were blocked with I % bovine serum albumin (BSA) in tris-buffered-saline with 0.05% Iween- (TBS-T+I% BSA) for lh at room temperature. After blocking plates were washed three times with phosphate-buffered-saline with 0.05% Iween-20 (PBS- T) and incubated at room temperature with peptides (80 jiM) in PBS-I+0. I % BSA. After lh. lxlO9 pfu of phages (see example 2) were added (in 10 p1) and incubation was continued for an additional lh at room temperature with agitation.

Plates were washed three times with PBS-T and hound phages detected with HRP-anti-M13 (1:3000 in TBS-T+0.1% BSA) (Calbiochern) staining for lb at room temperature. After staining, plates were washed three times with PBST and developed using SIGMA-FASTTM o-phenylenediamirie dihydrachioride tablets (SIGMA-Aldrich, St Louis. MO, USA) according to manufacture's instructions.

Cyclic peptides were synthesized at the Department of Bioscience (Helsinki, Finland) as described (Koivunen el al. 1994;Koivunen et al. 1999h). Peptide sequences were as follows: p6 17: CWJWPDSGWC [SEQ ID NO:6J p618: CGIWFENEWC [SEQ ID NO:5] control peptide (ctrl-pep): CILWMKKGWC [SEQ ID NO:l 1] Results The results in figure 3 demonstrate that the synthetic peptides p617 and 618 inhibit dO and all 1-domain interaction of phages Al and A2 expressing cyclic peptides. P61 7 completely inhibits interaction of phageAl (figure 3A and C) and phageA2 (figure 3B) to both dO and all I-domains. P618 completely inhibits phageAl interaction to all 1-domain (figure 3A) and to a lower degree the phageA2 interaction to cii 0 (figure 3C) and all (figure 3B).

These results demonstrate that the peptides derived from the selected phages are functional and bind to the 1-domains thereby blocking the phage interaction to the I-domains.

Example 4

objective The objective with this example was to demonstrate thai phages and peptides could interact with whole integrin.

Materials and methods 96-well MaxiSorb plates (Nunc) were coated with polyclonal antibodies (5 ig/ml) recognising the cytoplasmic tail of all integrins, over night at 4 C in phosphate buffered saline (PBS)+Mg2 /Ca24 (GIBCO BRI.) followed by washing in tris buffered saline with 0.05% Tween-20 (TBS-T) and blocking with 2 % 2+ 2+ hovme serum albumin (BSA) in TBS-T with 1 mM Mg and 10 iM Ca at room temperature for lb. After washing, wells were incubated for lh at room temperature with cell-extract from 1-IEK 293-cells transfected with all -integrins, in cell lysis buffer (1% NP4O. 20mM Tris pH 7.5, 150mM NaCl, 1 mM MgC12, 1 0 jiM CaCI2, 1:50 Complete proteinase inhibitor). After washing, phages (see example 2) (l0 plaque forming units (pfu)/ml in TBS + 1mM Mg2 and 10 jiM Ca2 with 1 % BSA and peptides (see example 3)(200 j.tg/ml in TBS + lmJ\4 Mg2 and 10 jiM Ca2 with I % BSA) were added. After incubation for one hour at room temperature, the plates were washed and bound phages detected with HRP conjugated anti-M13 phage antibody (diluted 1:3000) (Calbiochem) for lb at room temperature. After staining plates were washed three times with TBS-T and developed using SIGMA -FASTTM o- phenylenediamine dihydrachi oride tablets (SIGMA-Aldrich, St Louis, MO, USA) according to the manufacturer's protocol and the absorhance at 450 nm was measured in a SpectraMax plate reader using the Softmax pro software.

Results The results in figure 4A demonstrate that phageAl, expressing the p618 peptide, binds to an anti-al I cytoplasmic tail coated surface preincubated with cell extract (CE) from integrin o.1 I transfected C2C12 cells (used as an example).

PhageAl interaction is blocked b synthetic peptide p61 8 and to a lesser extent by p617. Binding of phageAl is dependent on CE from the integrin all transfected cells. These data suggest that the synthetic cyclic peptides bind the I- domains of the intact integrin a chains.

Example 5

Objective The objective with this example is to demonstrate that peptides p617 and p618 are functional modulators of integrin al. al 0 and/or all Idomain interaction to collagen.

Materials and Methods 96-well MaxiSorh plates were coated with 1 0 mg/mi collagen type Vi in phosphate buffered saline (PBS) at 4 C for 48 hours followed by blocking with 1% bovine serum albumin (BSA) in tris-huffered-saline with 0.05% Tween-20 (TBS-T), 1mM Mg2 and 10 tM Ca2t for 1 hour at room temperature. The wells were washed 3 x 300 pJ with TBS-T+Mg/Ca and the recombinant I-domains (lOOnM) (see example 2), when indicated preincubated for 30 mm with peptides (see example 3) (160iM or as indicated in figure), were added in TBS-T+ Mg/Ca with or without 10 mM EDTA. After I h incubation at room temperature the wells were washed again as described and incubated for lh at room temperature with 50 tl goat-anti-GST antibody (Amersham Bioscience) diluted 1:1000 in 0.1% BSA in TBS-T+Mg/Ca., washed and incubated for 45 mm at room temperature with HRP-conjugatcd rabbit-anti-goat antibody (Dakopatts A/S, Copenhagen Denmark) diluted 1:5000. After final washing, detection was carried out using SIGMA-FASTTM o-phenylenediami ne dihydrachlori de tablets (SI GMAAldrich, St Louis, MO. USA) according to the manufacturers' description. 50 l 2 M H2S04 was added and the absorbance at 492 nrn was measured in a SpectraMax plate reader using the Softmax pro software. Statistics: Oneway ANOVA with Tukey' s multiple comparison test. N4.

Results Recombinant GST-tagged 1-domains (lOOnM) were allowed to bind collagen VI or BSA pre-coated wells and bound protein was detected using an anti-GST antibody. Binding was allowed in the presence or absence of peptides p61 7 or p618. The results in figure 5A demonstrate that GST-tagged a.1, ul 0 and all I- domains interact with collagen type VI in a cation dependent manner, i.e. EDTA clearly reduce binding. There is no binding to BSA coated wells and no binding of the GST control to collagen type VI. The results in figure 5B demonstrate that the synthetic cyclic peptides inhibit I-domain interaction to collagen VI. P617 significantly inhibits alO (p<O.Ol) interaction to collagen. P618 significantly inhibits al (p<O.OOI), alO (p<O.OOl) and all (p<O.OOl) interaction to collagen.

The inhibitory effect of p618 on collagen interaction is strongest on all I-domain interaction, then al 0 1-domain interaction. This could reflect a different affinity/specificity of p618 for the different integrin a chains. l'he results in figure 5C demonstrate that p61 8 inhibits al, al 0 and all I-domain interaction to collagen type VI in a concentration dependent manner. Taken together, these data shows that the peptides are functional modulators of integrin function, since they can reduce I-domain interaction to a natural ligand (collagen) in a concentration dependant manner. As a consequence it is likely that the peptides would interfere with e.g. integrin dependent focal adhesion and migration.

Example 6

Objective The objective with this example is to demonstrate that pro-MMP13 hut not pro- MMP9 interacts with al() and all 1-domains.

Materials and Methods Sandwich ELISA fIgures 6A, B and C'): MaxiSorb plates were coated with tg/ml anti-his-antibody (MABO5O R&D Systems) diluted in tris-buffered- saline (TBS) over night at 4 C followed by blocking with 1 % bovine serum albumin (BSA) in TBS-T (TBS+0.05% Tween 20)for 1 hour and washing (x3) with TBS-T. His-tagged proMMP-13 (33nM) was allowed to interact with the GST-taggcd 1-domains (see example 2) (20 320 nM) in 100 il TBS-T with 2+ +2 1mM Mg. l00!IM Ca and 0.1 / BSA for 1 hour. The samples were then diluted and added to parallel wells of the anti-His coated plate and incubated for 1 hour at room temperature. After incubation, plates were sequentially stained with: goat-anti-GST antibody (Amersham Bioscience) (50 111/well diluted 1:1000 in TBS-T+Mg/Ca+0.1%BSA) for lh at room temperature. donkey-anti-goat- biotin (Dakopatts A/S. Copenhagen, Denmark) (50 j.tl/well diluted 1:100 000 in TBS-T+M.g/Ca+0.l%BSA) for lh at room temperature and Streptavidin- HRP (Dakopatts A/S, Copenhagen, Denmark) (50 il/we11 diluted 1:2000 in TBST+Mg/Ca+0.l%BSA) for 30 minutes at room temperature. Wells were washed with TBS-T+Mg/Ca between each incubation. After final washing, detection was carried out using SiGMA-FASTTM o-phenylenediamine dihydrachioride tablets (SIGMA-Aldrich, St Louis, MO, USA) according to the manufacturers' description. Absorbance was measured in a SpectraMax plate reader using the Softmax pro software. In figure C pro-MMP 1 3 was activated for 1.5h at 37 C with 1mM APMA in TBS-T Mg/Ca.

Solid phase assay (fIgure D,): MaxiSorb plates were coated over night at 4 C with ng/ml proMMP9 (Calbiochem, San Diego. CA, USA) in TBS followed by blocking with TBS-T+l% BSA for 1 hour at room temperature. Plates were washed 3x with TBS-T and incubated with recombinant GST-tagged i-domains (20nM) in TBS-T Mg/Ca 0. 1% BSA for 21i at room temperature. After incubation and washing (x3) with TBS-T Mg/Ca plates were incubated for lh at room temperature with 50 iii goat-anti-GST antibody (Amersharn Bioscience) diluted 1:1 000 in TBS-T+Mg/Ca 0. 1% BSA, washed and incubated for 45 mm at room temperature with HRP-conj ugated rabbit-anti- goat antibody (Dakopatts A/S. Copenhagen Denmark) diluted 1:5000. After final washing, detection was carried out using SI GMA-FASTTM o- phenylenediam me dihydrachioride tablets (SIGMA-Aldrich, St Louis, MO, USA) according to the manufacturer's description. 50 p1 2 M H2S04 was added and the absorbance at 492 nm was measured in a SpectraMax plate reader using the Softmax pro software.

Results The results in figure 6A demonstrate that alO and all 1-domains bind pro- MMP 13 in a concentration dependent maimer. Increased concentrations (20- 320nM) of I-domain, hut not the GST control, results in increased binding to a fixed concentration of pro-MMPI3 (33 nM).. I-domain was allowed to interact with recombinant his-tagged pro-MMPI3 in solution. The complex was then added to wells pre-coated with anti-His-antibody. Bound GST- fusions was detected using a monoclonal anti-GST antibody. Values are corrected for unspecific binding to BSA.

The results in figure 6B demonstrate that the interaction between all Idomain and pro-MMPI3 is not cation dependent. Aiphal 1 1-domain (l6OnM) was allowed to interact with recombinant his-tagged pro-MMPI 3 (33 nM) in the presence of 1 mM Mg2/l00 jiM Ca2 or 10 mM ED1'A. The complex was then added to wells pre-coated with anti-His-antibody. Bound GST-fusions was detected using a monoclonal anti-GST antibody. Data also demonstrate that that the binding of pro-MMPI3 is 1-domain specific since there is low binding to the GST control and since excluding pro-MMP13 or 1-domain from the assay results in low signal.

The results in figure 6C demonstrate that pro-MMP 13. but not activated MMP 13.

interacts with I-domain. These data suggest a model where proMMP (e.g. proMMPl3) is bound to the collagen binding integrins (e.g. integrin al 0/hetal or all /betal) on the cell surface (e.g. a chondrocyte), L e. the inactive proMMP is localised to the cell surface and presented for activation by e.g. the membrane bound MMPI4. After activation the active MMP is released from the integrin to digest its substrate. This way the integrin could be involved in both localisation of MMP and regulation of MMP activity. Breaking or prohibiting (see example 7) this interaction could he a way of blocking matrix degradation.

After activation of the proAl 1 1-domain (80 nM) or UST-control (80 nM) was allowed to interact with recombinant his-tagged pro-MMP 13 (33 nM) or APMA activated MMP13 (33 nM) in solution. The complex was then added to we]ls pre- coated with anti-I-us-antibody. Bound GST-fusions was detected using a monoclonal anti-GST antibody. Values are corrected for unspecific binding to BSA.

i'he results in figure 6D demonstrate that aM 1-domain, but not alO, all or the GST-control. interacts with proMMP9. This shows selectivity in Idomain-MMP interaction where certain MMPs interacts with certain Idomains. We show as an example of this that the collagen type II degrading proenzyme pro-MMPI 3, but not pro-MMP9. could interact with the 1-domains of integrin alO and all but that the 1-domain of aM could interact with pro-MMP.. interaction was analyzed using a solid phase assay where GST-fused 1-domains were allowed to bind to wells coated with pro-MMP9 (20 ng/well). Bound GST-fusions was detected using a monoclonal anti-GST antibody. Values are corrected for unspecific binding to BSA.

Example 7

jective The objective with this example was to demonstrate that the synthetic cyclic peptide p618 could inhibit pro-MMPI 3 interaction to integrin al 0 and all 1- domains.

Materials and Methods MaxiSorh plates were coated with 10 ig/ml anti-hisantibody (MABO5O R&D Systems) diluted in tris-bufléred-saline (TBS) over night at 4 C followed by blocking with I % bovine serum albumin (BSA) in TBS-T (TBS+0.05% Tween 20) for 1 hour and washing (x3) with TBS-T. Histagged proMMP-13 (33nM) was allowed to interact with the GST-tagged 1-domains (see example 2) (160 nM) in 100 tl TBS-T with 1mM Mg2, 1 00tM Ca2 and 0.1% BSA in the presence or absence of 160 tM peptide (see example 3) for 1 hour. The samples were then diluted and added to parallel wells of the anti-His coated plate and incubated for 1 hour at room temperature. After incubation, plates were sequentially stained with; goat-anti-GST antibody (Amersham Bioscience) (50 pA/well diluted 1:1000 in TBS-T+Mg/Ca+0.l%BSA) for lh at room temperature, donkey-anti-goat-biotin (Dakopatts A/S, Copenhagen, Denmark) (50 pd/well diluted 1:100 000 in TBS-T+Mg/Ca+0.l%BSA) for lh at room temperature and Streptavidin-HRP (Dakopatts A/S, Copenhagen, Denmark) (50 pd/well diluted 1:2000 in TBS-T Mg/Ca-i-0.1%BSA) for 30 minutes at room temperature. Wells were washed with TBS-T+Mg/Ca between each incubation. After final washing, detection was carried out using S1GMAFASTTM o-phenylenediamine dihydrachloride tablets (SIGMA-Aldrich, St Louis, MO, USA) according to the manufacturers' description. 2 M H2S04 was added and the absorbance at 492 nm was measured in a SpectraMax plate reader using the Softmax pro software.

Results The interaction between pro-MMP-l3 and the recombinant GST-tagged I- domains of integrin al() - and all was studied in a sandwich-ELISA in the presence of the peptides; p61 7. p61 8, or a control peptide. The results in figure 7A and 7B demonstrate that p618 inhibits the binding of the (1ST-tagged al 0 and x11 1-domains to proMMP-13. The p617 or the control peptide had no effect on pro-MMP13/l-domain interactions. GST represent background interaction between proMMPi3 and the GST control protein. Statistics: One- way ANOVA followed by Tukey's multiple comparison test. N=6 (data from two independent experiments).

Example 8

Objective The objective with this example is to demonstrate that the synthetic peptide p618 iithibits pro-MMP13 interaction to the whole integrin using integrin ulO as an

example.

Materials and Methods MaxiSorb plates were coated with 10 ig/ml anti-hisantibody (MABO5O R&D Systems) diluted in phosphate-buffered-saline (PBS) over night at 4 C followed by blocking with 1 % heat-inactivated bovine serum albumin (BSA) in TBS-T (TBS+0.05% Tween 20) for 1 hour and washing (x3) with TBS-T. Cell-extract from IIEK 293-cells. transfected with alO-integrin in cell lysis buffer (1% NP4O, mM Tris pH 7.5, 150 mM NaCI, 1 mM MgCl2, 10 jM CaCI2, 1:50 Complete proteiriase inhibitor) was preincuhated at room temperature with peptides (see example 3)(160.tM). After 10 minutes of pre-incubation his- tagged proMMP-13 (22nM) was added and incubation was continued for an additional lb at room temperature. The samples were then diluted and added to parallel wells of the

OL

anti-His coaled plate and incubated for 1 hour at room temperature. After incubation plates were sequentially stained with: polyclonal anti-cfl 0 antibody (specific for cii 0 cytoplasmic tail)( 1 00 jil/well diluted 1:1 000 in TBS-T with 1mM Mg2. l00xM Ca2 and 1%BSA for lh at room temperature and donkey- anti-rahbit-HRP (Dakopatts A/S, Copenhagen. Denmark) (100 il!well diluted 1:1000 in TBS-T+Mg/Ca+l /BSA) for lb at room temperature. Wells were washed with TBS-T+Mg/Ca between each incubation. After final washing, detection was carried out using S1GMAFASTTM o-phenylenediamine dihydrachioride tablets (SIGMA-Aldrich. St Louis, MO, USA) according to the manufacturers' description. 2 M J-12S04 was added and the absorbance at 492 nm was measured in a SpectraMax plate reader using the Softrnax pro software.

Results The interaction between pro-MMP-1 3 and solubilised intact integrin cii 0/betal was studied in a sandwich-ELISA in the presence of the peptides p617, p61 8 or a control peptide. The results in figure 8 demonstrate that p618 have an inhibitory effect on the binding between the whole cil() integrin and pro-MMP13. The p617 had no or only weak effects compared to the control peptide.

Example 9

Objective The objective with this example is to show that human chondrocytes cultured in high-density monolayer up-regulate MMP production after IL-113 stimulation and that this induction is prohibited in the presence of dexamethasone.

Material and Methods 1-luman chondrocytes from femur condyle cartilage of a 56-year old donor was cultured in DMEM/F12 (GIBCO BRL) supplemented with 10% FCS, PEST and ascorbic acid (50 ig/m1) for 1 0 days before onset of experiment. On day 1. cells were plated (100000 cells/well) in 96-well culture plates in DMEM/F12 supplemented with 1 0% FCS. PEST and ascorbic acid (50 tg/ml). On day 2 and 3 medium was changed to DMEM high glucose without phenol red (GIBCO BRL) supplemented with PEST and ascorbic acid (50 ig/ml). On day 2 and 3 cells were stimulated with IL-Ill (R&D Systems) (Sng/ml) or IL-Ill plus dexamethasone (Sigma)(1() riM). On day 4 supernatants were transferred to a black 96 well plate. and M.MP activity was measured as described by (Knight et al. 1992) using a quenched fluorescence assay. Briefly, the supernatants were treated with I mM amino-phenyl-mercuric-acetate (APMA) in assay-buffer (50mM Tris/1-TCl, 5mM CaCI2. p11 7.5) for one hour at 37 C. After addition of 2 iI MMP-suhstrate (Calbiochem), the increase in fluorescence (ex 328 nm and em 393 nm) due to substrate cleavage was measured during one hour at 37 C. The Vmax / second was calculated using Softmax PRO.

Results The results in figure 9 demonstrate that IL-ill induce MMPsynthesis from human chondrocytes cultured in high-density monolayer after 2 days of stimulation. The presence of dexamethasone during IL-Ill stimulation inhibits the MMP-production. MMP production was measured, using a quenched fluorescence assay, in APMA activated culture supernatants after 48 hours stimulation.

Example 10

Objective The objective with this example was to demonstrate that cyclic peptides p61 7 and p61 8 could inhibit IL-IfI induced increased MMP protein production.

Materials and methods Human chondrocytes were prepared from fernoral condyle cartilage of a 63- year- old donor as described in Example 9 above. The chondrocytes were cultured in DMEM-F12 (GIBCO BRL) supplemented with 10% foetal calf serum (FCS), PEST (50 U/mI penicillin and 50.ig/ml streptornycin) and ascorbic acid (So jig/mi), for ten days post isolation. On day 1 of the experiment the cells were detached and seeded in a 96 well culture plate at high cell density (100 000 cells/well) and left to adhere over night (37 C, 5 A C02) . On day 2 the cells were gently washed with PBS and stimulated with IL-l (5 ng/ml). IL1-3 plus dexamethasone (10 jiM) or IL-113 plus peptides (see example 3) (l6OjiM) in DMEM-high glucose medium (without indicator) (GIBCO BRL) supplemented with PEST and ascorbic acid and the stimulation was repeated on day 3. On day 4 (48h after the first stimulation) 40 pA of the supernatant was transferred to a black micro titre plate (NIJNC) in duplicate wells. The detection of MMP-present in the supernatant was performed as described (Knight et al. 1992) using a quenched fluorescence assay. Briefly, the supematants were treated with 1 mM amino- phenyl-mercuric-acetate (APMA) in assay-buffer (50mM Tris/HC1, 5mM CaC12, p1-I 7.5) for one hour at 37 C. After addition of 2 pA MMP-substrate (Calbiochem), the increase of fluorescence (ex 328 nm and em 393 nm) was measured during one hour at 37 C. The \max / second was calculated. Statistics: Kruskal-Wallis test followed by Dunn's multiple comparison test, N6.

Results The results in figure 10 demonstrate that the cyclic peptide p617 reduce IL-lB induced total MMP activity in the APMA activated cell culture supernatants of human chondrocytes (p<O.OOl p617 vs. ctr!-peptide and p<O.OOI p617 vs. IL-113).

Also. p618 inhibited MMP production hut to a lower degree. The control peptide had no effect on MMP activity.

Example 11

Objective The objective with this example was to demonstrate that the altered MMP gene expression profile and increased total MMP protein production induced by over- expression of integrin ul 0 and all in human chondrocytes could be inhibited by treatment with peptides p617 and p6l8.

Materials and methods Human chondrocytes were prepared from tibial plateau of a 45-year-old donor as described (Goidring et al. 1 986;Archer et al. 1990). The chondrocytes were cultured in DMEM-F12 (GIBCO BRL) supplemented with 10% foetal calf serum (FCS), PEST (50 U/mI penicillin and 50 jig/ml streptomycin) and ascorbic acid (50 ig/rn1), for ten days post isolation. On day I of the experiment the chondrocytes were detached and infected in suspension (100 p1 of DMEM-F12 supplemented with 1 0% FCS and PEST) with 1 00 multiplicity of infection (MOl) of adenovirus (Adeno5) encoding human al 0 or all integrins (He et al. 1998).

After 2h of infection, the cells seeded in a 96 well culture plate at high cell density (100 000 cells/well) and allowed to adhere over night (37 C, 5% C02).

On day 2 the cells were gently washed with PBS and stimulated with IL-1f3 (5 iig/mI). ILI-13 plus dexamethasone (10 jiM) or 1L-lf3 plus peptides (see example 3) (l6OjiM) in DMEM-high glucose medium (without indicator) (GIBCO BRL) supplemented with PEST and ascorbic acid and the stimulation was repeated on day 3. On day 4 (48h after the first stimulation) 40 il of the supernatant was transferred to a black micro titre plate (NUNC) in duplicate wells. The detection of MMP-present in the supernatant was performed as described (Knight Ct al. 1 992) using a quenched fluorescence assay. Briefly. the supernatants were treated with 1 mM arnino-pheny] -mercuric -acetate (APMA) in assay- buffer (50mM Tris/HC1, 5mM CaCI2. pIT 7.5) fbr one hour at 37 C. After addition of 2 jil MMP-suhstrate (Calbiochem), the increase of fluorescence (cx 328 nm and em 393 nm) was measured during one hour at 37 C. The Vmax / second was calculated.The cells were gently washed with PBS and medium changed to DMEM-high glucose medium (without indicator) (GIBCO BRL) supplemented with PEST and ascorbic acid. Four days after infection 40 tl of the supernatant was transferred to a black micro titre plate (NUNC) in duplicate wells. The detection of MMP-present in the supematant was performed as described (Knight ci al. 1992) using a quenched fluorescence assay. Briefly, the supernatants were treated with I mM amino-phenyl- mercuric-acetate (APMA) in assay-buffer (50mM Tris/I-IC1, 5mM CaCI2, pH 7.5) for one hour at 37 C. After addition of 2 j MMP-substrate (Caihiochem). the increase of fluorescence (cx 328 nm and em 393 nm) was measured during one hour at 37 C. The Vmax / second was calculated.

On day 4 after infection total RNA was isolated from the chondrocytes using a kit (RNeasy, Qiagen) with the addition of a DNase treatment step according to the manufacturers' instructions. I jig total RNA was reverse transcribed using 200 units Superscript II (Invitrogen) and 200 ng random hexarner oligonucleotides.

The reaction parameters were: 10 minutes at 25 C, 30 minutes at 37 C, minutes at 42 C and 1 5 minutes at 65 C. eDNA (20 ng) was subjected to real- time RT-PCR analyses to detennine the relative mRNA levels of MMP1, MMP13 and MMPI4 to glyceraldehyde-3-phosphate dehydrogenase (GAPDH).

The primer sequences used were as follows: For MMPJ: CCCTGAAGGTGATGAAGCAG [SEQ ID NO:12]. and CTTGGTGAATGTCAGAGGT(1 [SEQ ID NO: 13]; For MMPJ3: CTCAGCAGGTTGATGCGGAG [SEQ ID NO:14]. and CTCAAAGTGAACAGCTGCAC [SEQ ID NO:15]; For MMP]4: CTTCAAGGAGCGCTGGTTCTG [SEQ ID NO: 16]. and AGAGCAGCATCAATCTTGTC [SEQ ID NO:17]; and For GAPDH: GGAGGGGAGATTCAGTGTGGT [SEQ ID NO:l 8], arid ACCAGCGACACCCACTCCTC [SEQ ID NO:19].

The mRNA expression levels were quantified with Real-Time reversed PCIR (RT- PCR) using FastStart DNA Master SYBR Green I (Roche Diagnostics mbH, Mannheim, Germany) according to the manufactures instructions and analysed on a LightCycler (Roche Diagnostics). The amplification parameters were: lOs at 95 C, 5s at 65 C and I 2s at 65 C. Products were checked using the melting curve function of the LightCycler. The relative ratio of MMP to GAPDIJ was calculated.

Results The results in figure 11 A-C demonstrate that both p617 and p61 8 decrease IL-lB induced mRNA expression of both MMPI and MMPI3 but to a lesser extent MMPI4 from both alO arid all transfected human chondrocytes. The results in figure lID shows that adenovirus based translection of integrin al C or all results in increased total MMP activity compared to non-transfected cells and that IL-i B treatment do not further increase the total MMP activity in the supernatants of the transfected cells. However, the p617 peptide as well as dexamethasone can reduce the total MMP activity caused by over-expression of alO arid all in human chondrocytes.

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Ref Type: Serial (Book,Monograph) Heino J (2000) The collagen receptor integrins have distinct ligand recognition and signaling functions. Matrix Biol 1 9:319-323 Henrotin Y, Sanchez C, Reginster JY (2002) The inhibition of metalloproteinases to treat osteoarthritis: reality and new perspectives. Expert Opinion on Therapeutic Patents 12:29-43 Hirst GL, Balmain A (2004) Forty years of cancer modelling in the mouse. Eur J Cancer 40:1974-1980 Hofmann UB, Houben R, Brocker EB, Becker JC (2005) Role of matrix metalloproteinases in melanoma cell invasion. Biochimie 87:307-31 4 Holmdahl R, Andersson M, Goldschmidt Ti, Gustafsson K, Jansson L, Mo JA (1990) Type II collagen autoimmunity in animals and provocations leading to arthritis. Immunol Rev 118:193-232 Hruby VJ (2002) Designing peptide receptor agonists and antagonists. Nat Rev Drug Discov 1:847-858 Huang I Li S. Komgold R (1997) Immunoglobulin superfamily proteins: structure, mechanisms, and drug discovery. Biopolymers 43:367-3 82 Hynes RO (2002) Integrins: bidirectional, allosteric signaling machines. Cell 110:673-687 lannone F, Lapadula G (2003) The pathophysiology of osteoarthritis. Aging Clin ExpRes 15:364-372 ivaska J. Reunanen 1-1. Westermarck J, Koivisto L, Kahari VM. Heino J (1999) Integrin alpha2hetal mediates isoform-specific activation of p38 and upregulation of collagen gene transcription by a mechanism involving the alpha2 cytoplasmic tail. . 1 Cell Biol 147:401-416 Jackson DY, Quan C. Artis DR. Rawson T, Blackburn B, Struble M, Fitzgerald G, Chan K. Mullins S. Burnier.TP. Fairbrother WJ, Clark K. Berisini M. Chui H. Renz M, Jones S. Fong S (1997) Potent alpha 4 beta I peptide antagonists as potential anti-inflammatory agents..J Med Chem 40:3359-3368 Karpusas M, Ferrani J. Weinreb PIT, Carmillo A, Taylor FR, Garher EA (2003) Crystal structure of the aiphaihetal integrin 1 domain in complex with an antibody Fab fragment. J Mol Biol 327:1031-1041 Kevorkian L. Young DA, Darrah C, Donell ST, Shepstone L, Porter S, Brockbank SM, Edwards DR. Parker AE, Clark TM (2004) Expression profiling of metalloproteinases and their inhibitors in cartilage. Arthritis Rheurn 50:131- 141 Khanna C, Hunter K (2005) Modeling metastasis in vivo. Carcinogenesis 26:513- Kitchen DB, Decomez H, Furr JR, Bajorath J (2004) Docking and scoring in \rirtual screening for drug discovery: methods and applications. Nat Rev Drug Discov 3:935-949 Knauper V. Lopez-Otin C, Smith B, Knight G, Murphy G (1996) Biochemical characterization of human collagenase-3. J Biol Chem 271:1544-1550 Knight CG. Willenbrock F. Murphy G (1992) A novel coumarin- labelled peptide for sensitive continuous assays of the matrix metalloproteinases. FEBS Lett 296:263-266 Kobayashi Y. Okunishi H (2002) Mast cells as a target of rheumatoid arthritis treatment. Jpn.1 Pharmacol 90:7-11 Koivunen E, Arap W, Valtanen H, Rainisalo A, Medina OP, Heikkila P, Kantor C. Gahniberg CG, Salo T, Konttinen YT, Sorsa T, Ruoslahti E, Pasqualini R (1 999a) Tumor targeting with a selective gelatinase inhibitor. Nat Biotechnol 17:768-774 Koivunen E, Restel BH, Rajotte D, Lahdcnranta J, Hagedorn M, Arap W, Pasqualini R (1999h) Integrin-hinding peptides derived from phage display libraries. Methods Mol Biol 129:3-17 Koivunen E, Wang B, Ruoslahti E (1994) Isolation of a highly specific ligand for the alpha 5 beta 1 integrin from a phage display library. J Cell Biol 124:373-3 80 Konttinen YT, Ainola M, Valleala H, Ma J, Ida H, Mandelin 3, Kinne RW.

Santavirta S, Sorsa T, Lopez-Otin C, Takagi M (1999) Analysis of 16 different matrix metalloproteinases (MMP-1 to MMP-20) in the synovial membrane: different profiles in trauma and rheumatoid arthritis. Ann Rheurn I)is 58:691-697 / .:, Langholz 0, Rockel D. Mauch C. Kozlowska E. Bank I. Krieg T, Eckes B (1995) Collagen and coflagenase gene expression in three-dimensional collagen lattices are differentially regulated by alpha I beta 1 and alpha 2 beta I integrins.J Cell Biol 131:1903-1915 Lee MI-I. Murphy Ci (2004) Matrix metalloproteinases at a glance. J Cell Sci117:4015-4016 Lefkovits.1, Topol RI (1995) Platelet glycoprotein lib/Illa receptor inhibitors in ischcmic heart disease. Curr Opin Cardiol 1 0:420426 Li WP, Anderson CJ (2003) Imaging matrix metalloproteinase expression in tumors. Q.1 NucI Mcd 47:201-208 Medina OP. Kairemo K, Valtanen 1-I. Kangasniemi A. Kaukinen S, Ahonen 1, Permi P, Annila A, Sneck M, Holopainen JM, Karonen SL, Kimrnnen PK, Koivunen E (2005) Radionuclide imaging of tumor xenografts in mice using a gelatinase-targeting peptide. Anticancer Res 25:33-42 Medina OP, Soderlund T, Laakkonen U, Tuominen EK, Koivunen E, Kinnunen PK (2001) Binding of novel peptide inhibitors of type IV collagenases to phospholipid membranes and use in liposome targeting to tumor cells in vitro.

Cancer Res 61:3978-3985 Medina OP. Zhu Y, Kairemo K (2004) Targeted liposomal drug delivery in cancer. Curr Phanu Des 10:2981-2989 Melendez B, Martinez-Delgado B, Cuadros M, Fernandez V. Diaz-Uriarte R, Benilez J (2005) Identification of amplified and highly expressed genes in amplicons of the T-cell line huT78 detected by cDNA microarray CGJ-I. Mol Cancer 4:5 Mitchell PG, Magna HA, Reeves LM, Lopresti-Morrow LL, Yocum SA, Rosner P.T, Geoghegan KF, 1-lambor JE (1996) Cloning, expression, and type II collagenol ytic activity of matrix metal loproteinase- 13 from human osteoarthritic cartilage. J Clin Invest 97:761-768 Mohammed FF, Smookier DS, Khokha R (2003) Metalloproteinases, inflammation, and rheumatoid arthritis. Aim Rheum Dis 62 Suppi 2:ii43-ii47 Murphy G, Knauper V, Atkinson S, Butler G, English W, Hutton M, Stracke J, Clark 1 (2002) Matrix metalloproteinases in arthritic disease. Arthritis Res 4 Suppi 3:S39-S49 Murphy G, Stanton H. Cowell S, Butler G, Knauper V. Atkinson S, Gavrilovic J (1999) Mechanisms for pro matrix metalloproteinase activation. APMIS 107:38- Nagase H, Woessner JF, Jr. (1999) Matrix metalloproteinases. J Biol Chern 274:21491-2 1494 Neuhold LA. Killar L. Zhao W. Sung ML. Warner L. Kulik J. Turner J. Wu W. Billinghurst C. Meijers F, Poole AR. Bahij P. DeGennaro 1.J (2001) Postnatal expression in hyaline cartilage of constitutively active human collagenase-3 (MMP-1 3) induces osteoarthritis in mice. J Clin invest 1 07:35-44 Noiri E. Gailit.1, Sheth D, Magazine IL Gurrath M, Muller G. Kessler H, (Ioligorsky MS (1994) Cyclic RGD peptides ameliorate ischemic acute renal failure in rats. Kidney mt 46:1050-1058 Ohman EM, Harrington RA, Lincoff AM, Kitt MM., Kleirnan NS, l'cheng JE (1995) Early clinical experience with integrelin. an inhibitor of the platelet glycoprotein IJb/IIla integrin receptor. Eur Heart J 16 Suppl L:50-55 Ojima I, Chakravarty S. Dong Q (1995) Antithromhotic agents: from RGD to peptide mimetics. Bioorg Med Chem 3:337-360 Pap T, Shigeyama Y, Kuchen S, Femihough JK, Simmen B, Gay RE, Bil]ingham M, Gay S (2000) Differential expression pattern of membrane-type matrix metalloproteinases in rheumatoid arthritis. Arthritis Rheum 43:1226-1232 Picker U. Butcher EC (1992) Physiological and molecular mechanisms of lymphocyte homing. Annu Rev immunol 10:56 1-591 Pond MJ, Nuki G (1973) Experimentally-induced osteoarthritis in the dog. Aim Rheum Dis 32:387-3 88 Ponder JW, Case DA (2003) Force fields for protein simulations. Adv Protein Chem 66:27-85 Poole A. Cartilage in Health and Disease. 14th. 226- 284. 2001. Williams and Wilkins. Arthritis and Allied Conditions. Koopman, WJ.

Ref Type: Serial (Book,Monograph) Pozzi A, Moberg PE, Miles LA, Wagner S, Soloway P. Gardner HA (2000) Elevated matrix metalloprotease and angiostatin levels in integrin alpha 1 knockout mice cause reduced tumor vascularization. Proc Natl Acad Sci U S A 97:2202-2207 Prockop DJ (1998) What holds us together? Why do some of us fall apart? What can we do about it? Matrix Biol 16:519-528 Riikonen T, Westermarck J, Koivisto L, Broherg A, Kahari VM, Heino J (1995) Integrin alpha 2 beta lisa positive regulator of collagenase (MMP-1) and collagen alpha 1(1) gene expression. J Biol Chem 270:13548-13552 Rose DM, Pozzi A, Zent R (2000) Integrins as therapeutic targets. Expert Opinion on Therapeutic Targets 4:397-41 1 Sabatini M, Lesur C. Thomas M, Chomel A, Anract P. de Nanteuil G, Pastoureau P (2005) Effect of inhibition of matrix metalloproteinases on cartilage loss in vitro and in a guinea pig model of osteoarthritis. Arthritis Rheum 52:171-180 Sandy.T. Proteolytic degradation of normal and osteoarthritic cartilage matrix.

Brandt. KD. Doherty, M. and Lohrnander. SL. Second. 82-92. 2003. Oxford University Press. Osteoarthritis.

Ref Type: Serial (Book,Monograph) Shlopov BV, Lie WR, Mainardi CL. Cole AA. Chuhinskaya S, Hasty KA (1997) Osteoarthritic lesions: involvement of three different collagenases. Arthritis Rheum 40:2065-2074 Smith GP, Scott.1K (1993) l.ibraries of pepiLides and proteins displayed i filamenlous phage. Methods Enzymol 217:228-257 Smolen.IS, Steiner G (2003) Therapeutic strategies for rheumatoid arthritis. Nat Rev I)rug Discov 2:473-488 Siefanidakis M, Koivunen E (2004) Peptide-mediated delivery of therapeutic and imaging agents into mammalian cells. Cun Pharm Des 1 0:3033-3044 Stricker TP, Dumin JA, Dickeson SK, Chung L, Nagase H, Parks WC, Santoro SA (2001) Structural analysis of the alpha(2) integrin I domainlprocollagenase-l (matrix metalloproteinase-1) interaction. J Biol Chem 276:29375-29381 Sun HB, Yokota H (2001) Messenger-RNA expression of matrix metal loproteinases, tissue inhibitors of metalloproteinases, and transcription factors in rheumatic synovial cells under mechanical stimuli. Bone 28:303- 309 Tiger CF, Fougerousse F, Grundstrom G, Veiling T, Gullherg D (2001) alphal Ibetal integrin is a receptor for interstitial collagens involved in cell migration and collagen reorganization on mesenchymal nonmuscle cells. Dev Biol 237:116-129 Tomita T, Nakase T, Kaneko M, Shi K, Takahi K, Ochi T, Yoshikawa H (2002) Expression of extracellular matrix metalloproteinase inducer and enhancement of the production of matrix metalloproteinases in rheumatoid arthritis. Arthritis Rheum 46:373-378 van der Kraan PM, Vitters EL, van Beuningen HM, van de Putte LB. van den Berg WB (1990) Degenerative knee joint lesions in mice after a single intra- articular collagenase injection. A new model of osteoarthritis. J Exp Pathol (Oxford) 71:19-3 1 van Osch GJ, van der Kraan PM, Vitters EL, Blankevoort L, van den Berg WB (1993) induction of osteoarthritis by intra-articular injection of collagenase in mice. Strain and sex related differences. Osteoarthritis Cartilage 1:171-177 Vihinen P, Ala-aho R, Kahari VM (2005) Matrix metalloproteinases as therapeutic targets in cancer. Curr Cancer Drug Targets 5:203-220 Vincenti MP, Brinckerhoff CE (2002) Transcriptional regulation of collagenase (MMP-l. MMP-13) genes in arthritis: integration of complex signaling pathways for the recruitment of gene-specific transcription factors. Arthritis Res 4:157-164 Voict S. Gossrau R. Baum 0. Loster K. 1-Iofrnann W. Reutter W (1995) Distribution and quantification of alpha I -integrin subunit in rat organs.

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Claims (92)

1. CLAIM S

   I. An isolated polypeptide capable of binding to an integrin 1-domain wherein the polvpeptide comprises an amino acid sequence selected from the following group: (IIWFENEW [SEQ IDNO:1]; WIWPDSGW ISEQ ID NO:2] WENWD(IWG [SEQ ID NO:3]; and/or WEDGWLHA [SEQ ID NO:4j.

   or a variant, fusion or derivative thereoL or a fusion of a said variant or derivative thereof.
2. 2. A polypeptide according to Claim I wherein the polypeptide is less than amino acids in length, for example less than 40, less than 30, less than 20, less than 15, less than 14, less than] 3, less than 12, less than Ii. less than 1 0, less than 9, less than 8, or less than 7 amino acids in length.
3. 3. A polypeptide according to Claim I or 2 wherein the polypeptide is between 8 and I 0 amino acids in length.
4. 4. A polypeptide according to any one of the preceding claims wherein the polypeptide comprises or consists of L-amino acids.
5. 5. A polypeptide according to any one of the preceding claims wherein one or more amino acids are modified or derivatised.
6. 6. A polypeptide according to any one of the preceding claims wherein the polypeptide is linear.
7. 7. A polypeptide according to any one of the preceding claims wherein the polypcptide is cyclic.
8. 8. A polvpeptide according to any one of the preceding claims wherein the polvpeptide exists in the fbi-rn of a multimer.
9. 9. A polypeptide according to any one of the preceding claims comprising the amino acid sequence of SEQ ID NO:1.
10. 1 0. A polypeptide according to Claim 9 comprising or consisting of the amino acid sequence of SEQ ID NO:5.
11. II. A polypeptide according to any one of the preceding claims comprising the amino acid sequence of SEQ ID NO:2.
12. 12. A polypeptide according to Claim 11 comprising or consisting of the amino acid sequence of SEQ ID NO:6.
13. 13. A polypeptide according to any one of the preceding claims comprising the amino acid sequence of SEQ ID NO:3.
14. 1 4. A polypeptide according to Claim 13 comprising or consisting of the amino acid sequence of SEQ 1D NO:7.
15. 1 5. A polypeptide according to any one of the preceding claims comprising the amino acid sequence of SEQ ID NO:4.
16. 1 6. A polypeptide according to Claim 1 5 comprising or consisting of the amino acid sequence of SEQ ID NO:8.
17. 17. A polypeptide according to Claim 10, 12, 14, or 16 wherein the polypeptide contains a disuiphide bond between the two cysteine amino acids.
18. 1 8. A polypeptide according to any one of the preceding claims wherein the integrin is expressed on chondrocytes, fibroblasts and/or cancer cells.
19. 1 9. A polypeptide according to any one of the prcceding claims wherein the integrin is a collagen-binding integrin.
20. 20. A polypeptide according to Claim 19 wherein the integrin is selected from the group consisting of au/131, a2/131, cii 0/131 and cii 1/131.
21. 21. A polypeptide according to Claim 20 wherein the integrin is alO/131.
22. 22. A polypeptide according to Claim 20 wherein the integrin is cii 1/131.
23. 23. A polypeptide according to any one of Claims 1 to 1 8 wherein the integrin is selected from the group consisting of aD132, aM132. aL132, cxX132 and aEfl7.
24. 24. A polypeptide according to any one of the preceding claims wherein the polypeptide exhibits specificity for a single integrin 1-domain.
25. 25. A polypeptide according to any one of the preceding claims wherein the polypeptide is capable of inhibiting a function of an integrin.
26. 26. A polypeptide according to any one of the preceding claims wherein the polypeptide is capable of inhibiting the binding of collagen to an integrin.
27. 27. A polypeptide according to any one of the preceding claims wherein the polypeptide is capable of inhibiting the binding of a metzincin to an integrin.
28. 28. A polypeptide according to Claim 27 wherein the metzincin is selected from the group consisting matrix metalloproteinases (MMPs), disintegrin and metalloproteases (ADAMs) and disiritegrin and metalloproteases with thrombospondin motifs (ADAMTSs), and pro-forms thereof
29. 29. A polypeptide according to Claim 28 wherein the metzincin is a metalloproteinase (MMP) or pro-form thereof
30. 30. A polvpeptide according to Claim 29 wherein the metalloproleinasc is selected from the group consisting of the collagenases MMP1. MMP8 and MMP 13.
31. 31. A polypeptide according to Claim 30 wherein the metalloproteinase is MMP 13.
32. 32. An isolated nucleic acid molecule encoding a polypeptide according to any one of Claims I to 31.
33. 33. A vector comprising a nucleic acid molecule according to Claim 32.
34. 34. A vector according to Claim 33 wherein the vector is an expression vector.
35. 35. A vector according to Claims 33 or 34 wherein the vector is suitable for replication in a eukaryotic cell.
36. 36. A vector according to Claims 35 wherein the vector is suitable for replication in a mammalian cell.
37. 37. A vector according to any one of Claims 33 to 36 wherein the vector is selected from the group consisting of pTWJN, pShuttle, pUCI8, pUG 19, pBacPAK, pBR322, pBR329, pTrc99A, pKK223-3, pSVL, pMSG, pRS4O3 to 406 and pRS4I 3 to 416.
38. 38. A host cell comprising a nucleic acid molecule according to Claim 32 or a vector according to any one of Claims 33 to 37.
39. 39. A host cell according to Claim 38 wherein the cell is a eukaryotic cell.
40. A host cell according to Claim 39 wherein the cell is a mammalian cell.
41. 41. A host cell according to any one of Claims 38 to 40 wherein cell is selected from the group consisting of E. co/i strain DHS, RRI, ER2566, CHO cells (e.g. CCL6I), NIH Swiss mouse embryo cells (NIH/3T3), COS-1 cells (e.g. CRL 1650 and 293), Sf9 cells and yeast cell lines YPH499 to 501.
42. 42. A method for making a polypeptide according to any one of Claims 1 to 31, the method comprising culturing a host cell according to any OflC of Claims 38 to 41 which expresses the polypeptide, and isolating the polypeptide therefrom.
43. 43. A method for making a polypeptide according to any one of Claim 1 to 3 1 comprising solid phase synthesis of the polypeptide.
44. 44. A pharmaceutical formulation comprising a polypeptide according to any one of Claims I to 31 in admixture with a pharmaceutically or veterinarily acceptable adjuvant, diluent or carrier.
45. 45. A polypeptide according to any one of Claims Ito 31 or a pharmaceutical formulation according to Claim 44 for use in medicine.
46. 46. Use of a polypeptide according to any one of Claims 1 to 31 or a pharmaceutical formulation according to Claim 44 in the preparation of a medicament for treating a disease or condition capable of being treated by an agent which modulates the function of an integrin and/or a metzincin.
47. 47. The use according to Claim 46 wherein the disease or condition capable of being treated by an agent which modulates the function of an integrin and/or a metzincin is selected from the group consisting of arthritic diseases, inflammatory diseases and conditions, cancer and metastasis progression, oral diseases, osteoporosis, tissue remodeling, angiogenesis, angiogenesis, lung diseases, wounds, burns, fractures, lesions and ulcers.
48. 48. The use according to Claim 46 or 47 wherein the disease or condition capable of being treated by an agent which modulates the function of an integrin and/or a metzincin is an arthritic disease.
49. 49. The use according to Claim 48 wherein the arthritic disease is selected from the group consisting of osteoarthritis, rheumatoid arthritis and reactive arthritis.
50. 50. The use according to Claim 46 or 47wherein the disease or condition capable of being treated by an agent which modulates the function of an integrin and/or a rnetzincin is an inflammatory disease or condition.
51. 51. The use according to Claim 50 wherein the inflammatory disease or condition is selected from the group consisting of Alzheimer's disease, psoriasis, asthma, atherosclerosis, sarcoidosis, atopic dermatitis, systemic lupus erythematosus, bullous pemphigoid, type I diabetes mellitus, chronic obstructive pulmonary disease, ulcerative colitis, gout, Helicobacier pylon gastritis, inflammatory bowl disease, Hepatitis C, ischaemia-reperfusion injury, multiple sclerosis, Neisserial or pneumococcal meningitis, tuberculosis and periodontitis
52. 52. The use according to Claim 46 or 47 wherein the disease or condition capable of being treated by an agent which modulates the function of an integrin and/or a metzincin is cancer.
53. 53. The use according to Claim 52 wherein the cancer is selected from the group consisting of sarcomas, carcinomas, myel omas, leukaernias, I ymphomas, melanoma and small cell lung cancer.
54. 54. A method of treating a patient in need of modulation of the function of an integrin and/or a metzincin, the method comprising administering to the patient an effective amount of a polypeptide according to any one of Claims I to 3 1 or a pharmaceutical formulation according to C]aim 44.
55. 55. A method according to Claim 54 wherein the patient has a disease or condition selected from the group consisting of arthritic diseases, inflammatory diseases and conditions, cancer and metastasis progression oral diseases, osteoporosis, tissue remodeling, angiogenesis, angiogenesis lung diseases, wounds, burns, fractures, lesions and ulcers.
56. 56. A method according to Claim 55 wherein the patient has an arthritic disease.
57. 57. A method according to Claim 56 wherein the method further comprises administering one or more conventional anti-arthritic agents.
58. 58. A method according to Claim 55 wherein the patient has an inflammatory disease or condition.
59. 59. A method according to Claim 58 wherein the method further comprises administering one or more conventional anti-inflammatory agents.
60. 60. A method according to Claim 55 wherein the patient has cancer.
61. 61. A method according to Claim 60 wherein the method further comprises administering one or more conventional anti-cancer agents.
62. 62. A method according to any one of Claims 54 to 61 wherein the patient is human.
63. 63. Use of a polypeptide according to any one of Claims 1 to 31 to detect the presence of an integrin in a sample.
64. 64. The use according to Claim 63 in the diagnosis of a disease or condition associated with an abnormal amount and/or function of an integrin.
65. 65. The use according to Claim 63 or 64 to detect the presence of an integrin in a sample in vilro.
66. 66. The use according to any one of Claims 63 to 6 wherein the sample is selected from the group consisting of tissue samples, blood samples, plasma samples and synovial fluid.
67. 67. The use according to Claim 66 wherein the sample is a connective tissue sample.
68. 68. The use according to Claim 66 or 67 wherein the sample is a cartilage tissue sample.
69. 69. The use according to Claim 66 or 67 wherein the sample is a synovium sample.
70. 70. The use according to any one of Claims 63 or 69 to detect the presence of an integrin in a sample in vivo.
71. 71. The use according to Claim 70 wherein the integrin is detected in vivo by X-ray, MR. ultrasound, scintigraphy, PET. SPECT, electrical impedance, light or magnetometric imaging modalities.
72. 72. The use according to any one of Claims 63 to 71 wherein the integrin is a collagen-binding integrin.
73. 73. The use according to Claim 72 wherein the collagen binding integrin is al031 orallf3l integrin.
74. 74. A method for diagnosing in a patient a disease or condition associated with abnormal level of an inlegrin, the method comprising: (a) providing a sample from the patient to be tested; (b) contacting the sample with a polypeptide according to any one of Claims I to 31 under conditions which permit the binding of the polypeptide to an integrin (if present in the sample); and (c) detecting the binding of the polypeptide to an inlegrin (if present in the sample) wherein the amount of polypeptide bound to the sample from the patient to he tested provides an indication of the amount of integrin in the sample.
75. 75. A method according to Claim 75 further comprising step (d) of comparing the amount of polypeptide bound to the sample from the patient to be tested with the amount of the polypeptide bound to a sample from a healthy individual (or population of individuals).
76. 76. The method according to Claim 65 or 66 wherein the integrin is a collagen-binding integrin.
77. 77. The method according to Claim 76 wherein the collagen-binding integrin isul0iH oral1[1 integrin.
78. 78. A kit for performing a method according to any one of Claims 74 to 77 comprising a polypeptide according to any one of Claims I to 31.
79. 79. LIse of a polypeptide according to any one of Claims 1 to 3110 improve targeting of liposomes to target cells.
80. 80. A polypeptide complex comprising a polypeptide according to any one of Claims I to 31 and an integrin subunit, or fragment thereof comprising an 1- domain.
81. 81. A complex according to Claim 80, wherein the complex is in crystalline form.
82. 82. A method of making a complex according to Claim 81 comprising cocrystallisiiig a polypeptide according to any one of Claims I to 3 1 and an integrin subunit. or fragment thereof comprising an I-domain.
83. 83. A method for identifying a candidate compound for the treatment of a disease or condition capable of being treated by an agent which modulates the function of an inlegrin and/or a matrix metalloproteinase. the method comprising determining if a compound to he tested competes with the binding of a polypeptide according to am' one of Claims I to 31 to an integrin 1-domain.
84. 84. A method according to any of Claim 83 further comprising the step of mixing the compound thus identified with a pharmaceutically acceptable carrier.
85. 85. A kit for performing a method according to Claim 83 or 84 comprising a polypeptide according to any one of Claims 1 to 31 and an integrin subunit or fragment thereof comprising or consisting of an I-domain, or means lhr producing the same.
86. 86. A compound identified by the method of Claim 83 or 84.
87. 87. A compound according to Claim 86 for use in medicine.
88. 88. A pharmaceutical formulation comprising a compound according to Claim 87 in admixture with a pharmaceutically or veterinarily acceptable adjuvant, diluent or carrier.
89. 89. A polypeptide capable of binding to an integrin 1-domain substantially as

    defined herein with reference to the description.
90. 90. A pharmaceutical formu]ation substantially as defined herein with

    reference to the description.
91. 91. A method of treating a patient in need of modulation of the function of an integrin and/or a metzincin substantially as defined herein with reference to the

    description.
92. 92. A method for identifying a candidate compound for the treatment of a disease or condition capable of being treated by an agent which modulates the function of an integrin and/or a metzincin substantiafly as defined herein with

    reference to the description.