GB2377757A

GB2377757A - Tissue clearing solution

Info

Publication number: GB2377757A
Application number: GB0117617A
Authority: GB
Inventors: Ann-Shyn Chiang
Original assignee: Individual
Current assignee: Individual
Priority date: 2001-07-19
Filing date: 2001-07-19
Publication date: 2003-01-22
Anticipated expiration: 2021-07-19
Also published as: GB2377757B; GB0117617D0

Abstract

Biological tissue samples are made transparent by treating with an aqueous clearing solution. The solution may comprise dimethyl sulfoxide, diatrizoate acid or it's sodium salt, EDTA, glucamine, NADP and/or a polyoxyalkylene derivative such as Tween (RTM) in an aqueous carrier.

Description

AN AQUEOUS TISSUE CLEARING SOLUTION FIELD OF THE INVENTION The invention relates to a solution used in analysis of biological tissues and, more particularly, to the composition of an aqueous clearing solution making biological tissues transparent.

BACKGROUND OF THE INVENTION For some lift sciences such as cell biology, neurobiology, molecular biology, physiology, immunology, signal biology, and development biology, to examine biological or non-biological planar or three-dimensional microscopic structures, in addition to having a good microscope such as a confocal microscope to obtain high-resolution images, it is also necessary to specially take care of preparation of samples, recording of microscopic images, and processing of images so that optics can be exploited to examine some samples and biological cells or tissues capable of emitting fluorescence. When preparing samples, it is necessary to assure the wholeness of three-dimensional structures of the samples in the processing procedure such as the fixation or mounting procedure.

Generally speaking, conventional transmitted light microscopy is extensively used in almost every biological laboratory for observation of cellular structures. Biological tissues are usually stained with dyes before they can be examined with microscopy. To view the stained internal structures, tissues are usually sectioned into thin slices. In order to increase tissue transparency, most preparations of stained samples are cleared by dehydration

and lipid extraction processes. For example, xylene is often used to clear paraffin sections after alcohol dehydration. As a result, the stained internal features can be sharply focused.

However, solvent extraction requires more processing time and often causes morphology distortion and needs to be avoided in some situations. For example, cryosectionings performed for rapid diagnosis purpose are usually not fixed well. These tissue slices are usually embedded directly in glycerol-based aqueous mountant without clearing process to avoid destruction of the fragile morphology. The resulting microscopic images are thus suffered from decrease of clarity. Moreover, during the processes of examination, scanning, and image reconstruction of biological tissues, the reconstructed thickness can only reach 100-200 micrometers due to not good transparency of tissue samples.

Accordingly, the present invention proposes an aqueous clearing solution to effectively make biological tissues transparent without damaging tissues and without dehydration process. Figs. 1A to 1 C demonstrate that an insect brain of about 500 11m thick that is normally opaque in saline (Fig. IA), semi-opaque in 80% glycerol-saline mixture (Fig. IB) and completely transparent in the invented clearing solution (Fig. 1 C).

SUMMARY OF THE INVENTION The primary object of the present invention is to provide an aqueous tissue clearing solution making biological tissues transparent without dehydration process.

Another object of the present invention is to provide a method to process biological tissue processed by an aqueous tissue clearing solution to obtain

images of higher resolution in fluorescent and non-fluorescent light microscopes.

Yet another object of the present invention is to provide an aqueous tissue clearing solution to make tissues transparent without damaging slices and detailed morphology of tissues.

To achieve the above objects, an aqueous tissue clearing solution of the present invention comprises one or more of dimethyl sulfoxide, diatrizoate acid, ethylenediaminetetraacetic acid, glucamine, ss-nicotinamide adenine dinucleotide phosphate, sodium diatrizoate, and derivative of polyoxyalkalene (with a trade name of Tween 20 and used as emulsifying agent and detergent) in a suitable aqueous solution. This aqueous tissue clearing solution is utilized to make tissues transparent.

BRIEF DESCRIPTION OF THE DRAWINGS : Figs. 1A to 1 C show evaluation of tissue transparency. Brain tissues of about 500 u. m thick are derived from the cockroach, Diploptera punctata, adult females. (A) The brain is opaque when incubated in the cockroach physiological saline solution. (B) The brain is semi-transparent in saline solution containing 80% glycerol. (C) The brain becomes completely transparent in the invented aqueous clearing solution.

Figs. 2A and 2B show effects of tissue transparency on confocal imaging.

Confocal image series of antennal glomeruli of the cockroach, D. punctata are taken at every 50u. m Z-intervals. (A) The internal glomeruli become invisible at depth of 100 um beneath the surface of the tissue when embedded in saline solution containing 80% glycerol. (B) The image of glomeruli remains clear

even at 200 um depth when embedded in the invented aqueous clearing solution.

Fig. 3 shows a three-dimensional map of brain neuropils of the cockroach, Diploptera punctata adult female.

Fig. 4 shows a microscopic image of the mushroom bodies in a transparent cricket brain observed under a general transmitted light microscope.

Fig. 5 shows a high-resolution confocal image of human fibroblasts embedded in the invented aqueous clearing solution.

Fig. 6 shows a three-dimensional reconstruction of the pollen grain about 100 u. m in diameter. The distance from each structure to the surface is indicated by color gradients.

DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS The present invention relates to an aqueous tissue clearing solution for use in making tissues transparent. The aqueous tissue clearing solution of the present invention comprises one or more of dimethyl sulfoxide, diatrizoate acid, ethylenediaminetetraacetic acid, glucamine, ss-nicotinamide adenine dinucleotide phosphate, sodium diatrizoate, and derivative of polyoxyalkalene (with a trade name of Tween 20 and used as emulsifying agent and detergent) in a suitable aqueous solution. The pH value of the above solution is adjusted to the range of 5-10.

The above tissues comprise biological structures such as animal and plant cells, biological organisms, and biological compounds and devices.

Transparency can be achieved by direct incubation of the tissue in the invented clearing solution with or without prior fixation. A biological tissue

having a better transparency is obtained after an incubation period. When a specific internal structure of interest is labeled with immunofluorescence or classical dyes, making transparency of components above and bellow the labeled object results in better imaging and higher detection sensitivity of the stained structure. Thus, making transparency with the invented aqueous clearing solution will enhance the observation and signal detection of fluorescent and non-fluorescent cellular structures during the application of optical detection methods such as confocal microscopy, fluorescence microscopy, conventional transmitted light microscopy, dissecting microscopy, flow cytometry, spectrophotometry, fluorescence plate detection and fluorescence chip detection, etc. The transparency achieved by using the aqueous tissue clearing solution of the present invention can enhance observation capability and signal detection sensitivity of fluorescent and nonfluorescent cellular structures.

Confocal microscopy offers the possibility of removing out-of-focus background fluorescence in a fluorescently labeled thick specimen and recording the X, Y and Z coordinates of objects that then can be rendered and analyzed three-dimensionally. Opacity of biological tissues thicker than 100 u. m, about 5-10 cells thickness, normally prevents efficient excitation and sufficient signal strength for fluorescence detection. On the other hand, routine methods using serial alcohol dehydration and methyl salicylate-permeated clearing often result in diffusion of the labeled fluorochromes. Clearing and embedding the fluorochrome-labeled tissues in the invented clearing solution largely overcome these problems. For example, when embedded in 80%

glycerol-saline mixture, the glomeruli within an insect's antennal lobe can only be confocally viewed up to 100 11m below the surface (Fig. 2A). In contrast, the internal structures deeper than 200 11m can still be clearly viewed when the sample is cleared and embedded in the invented aqueous clearing solution (Fig. 2B). Furthermore, the fluorescence NBD-ceramide, the membrane probe used for staining all lipophilic structures within biological tissues, will be gradually dissolved in glycerol-saline mixture. As a result, details of the labeled fine structures are no longer visible. In contrast, those details remain clear when the same tissue is embedded in the invented aqueous clearing solution.

The present invention will be illustrated by describing the following examples.

EXAMPLE 1 : Microscopic imaging of thick tissues labeled with fluorescent probes.

An insect brain, more than 500 11m thick, of the cockroach Diploptera punctata is used for the demonstration. Neuropil structures and neuronal somata within the brain were stained with the lipophilic membrane probe NBD

C6-ceramide and DNA-probe propidium iodide. After proper fixation in 4% paraformaldehyde, nuclei within the brains were digested with 50 ug/ml RNase and stained with 2011g/ml propidium iodide in phosphate buffered saline. Subsequently, after briefly rinsed in phosphate buffered saline, membranes were stained with 0.435mM NBD C6-ceramide in DMSO. The brain was making transparent by direct incubation in the invented clearing solution for one hour. To avoid compression under the coverslip, specimen were placed within spacer rings approximately 600lem in height and then subjected for

confocal microscope imaging. The fluorescent structures within the entire brain can then be directly observed under a conventional fluorescence microscope or imaged with a confocal microscope. Fig. 3 shows a three-dimensional cockroach brain containing all internal neuropils reconstructed from computer- segmented images of 168 confocal optical slices. This would not be possible if the brain tissue is not transparent enough for laser penetration and fluorescence detection.

In addition to making whole-mount tissue transparent, the invented clearing solution can be also applied for tissue slices such as cryosections and vibratome slices.

EXAMPLE 2 Microscopic imaging of thick tissues labeled with nonfluorescent dyes.

The brain of the cricket, Acheta domesticus, is used for the demonstration.

The brain was fixed in 4% paraformaldehyde in phosphate buffered saline (360 mOsM per Kg H2O, pH 7.4) on ice for 2 hours. They were then washed 3 times in ice-cold PBS, 10 min each wash. The tissues were permeabilized by incubating them for 16 h at 4 C in phosphate buffered saline containing 1% Triton X-100. After being washed with phosphate buffered saline, fixationinsensitive NADPH-diaphorase activity was visualized by incubating the tissues at 27 C for 2 hours in lOOu ! Tris-HCI (50mM, pH 7.4) containing 1%

Triton X-100, ImM ss-NADPH and 0. 5mM NBT. Blue formazan precipitates out of the solution and, in so doing, indicates sites where NADPH-diaphorase has reacted. Non-specific background precipitation was removed by extensive washing of tissues for 72 hours in Tris-HCI buffer containing 1% Triton X-100.

After cleaning the surrounding connective tissues, the entire brain of more than zum thick was making transparent by direct incubation in the invented aqueous clearing solution for one hour. To avoid compression under the coverslip, specimen were placed within spacer rings mounted in the same aqueous clearing solution, viewed and photographed the tissue under a dissecting microscopy or with a Zeiss Axiophot (Carl Zeiss, Jena, Germany) compound microscope using Nomarski optics. Fig. 4 shows that high NADPHdiaphorase activity indicated with formazan precipitates occurred at the mushroom bodies. The internal mushroom bodies can be clearly viewed because the brain is made transparent by incubation in the invented clearing solution.

This method can be also applied for viewing structures within tissues slices derived from cryosections and vibratome slices labeled with non-fluorescent dyes.

EXAMPLE 3 Microscopic imaging of single cells labeled with fluorescent or non-fluorescent probes.

Fixed single cells on the slides can be directly cleared and mounted in the invented clearing solution. The aqueous nature of the clearing solution allows its direct usage for immunofluorescence-or other fluorochrome-labeled single cells. Fig. 5 shows that high degree of transparency largely improves the resolution and sensitivity for image detection using confocal microscope.

Because of the improved transparency, excitation efficiency and emission detection sensitivity are greatly increased. Therefore, application of smaller pinhole for removing out-of-focus background fluorescence can be applied.

This method can be also applied for viewing single cells labeled with non-fluorescence dyes with conventional microscope. It is also effective for tissues with autofluorescence such as Drosophila mutants expressing green fluorescence proteins or plant tissues. Fig. 6 shows a three-dimensional reconstruction of an autofluorescent pollen grain about 100 Mm in diameter.

The surface morphology with depth code is rendered from a stack of confocal optical sections at 5-micrometer intervals.

Although the present invention has been described with reference to the preferred embodiments thereof, it will be understood that the invention is not limited to the details thereof. Various substitutions and modifications have been suggested in the foregoing description, and others will occur to those of ordinary skill in the art. Therefore, all such substitutions and modifications are intended to be embraced within the scope of the invention as defined in the appended claims.

Claims

1. An aqueous clearing solution for use in increasing the transparency of biological tissues, composition of said clearing solution comprising one or more of dimethyl sulfoxide, diatrizoate acid, ethylenediaminetetraacetic acid, glucamine, ss-nicotinamide adenine dinucleotide phosphate, sodium diatrizoate, and derivative of polyoxyalkalene, said composition being placed in a suitable aqueous carrier therefor.

2. The aqueous clearing solution as claimed in claim 1, wherein said biological tissues comprise animal and plant cells.

3. The aqueous clearing solution as claimed in claim 1, wherein said biological tissues comprise biological organisms.

4. The aqueous clearing solution as claimed in claim 1, wherein said biological tissues comprise biological compounds and devises.

5. The aqueous clearing solution as claimed in claim 1 that is buffered to a pH from 5 to 10.

6. The aqueous clearing solution as claimed in claim 1 further comprising an excess of sodium diatrizoate and diatrizoate acid.

7. The aqueous clearing solution as claimed in claim 1 further comprising an excess ofDMSO.

8. A method for increasing the transparency of biological tissues to obtain a clear and transparent biological tissue sample after said biological tissue is processed by an aqueous tissue clearing solution.

9. A method as claimed in claims 8, wherein said sample can be examined by a confocal microscope.

10. A method as claimed in claims 8, wherein said sample can be examined by a light microscope.

11. A method as claimed in claims 8, wherein said sample can be examined by a flow cytometer.

12. A method as claimed in claims 8, wherein said sample can be directly observed with eyes or a dissecting microscope.

13. A method of examining biological tissues, comprising the steps of : processing a biological tissue using an aqueous tissue clearing solution to obtain a clean and transparent biological tissue sample; and using a microscope to examine said sample to obtain an internal structural image of said sample.

14. The method as claimed in claim 13, wherein said microscope is a confocal microscope.

15. The method as claimed in claim 13, wherein said microscope is a light microscope.

16. An aqueous clearing solution with clearing composition placed in a suitable aqueous carrier therefor to increase the transparency of biological tissues.

17. The aqueous clearing solution as claimed in claim 16, wherein said clearing composition of said aqueous clearing solution comprises one or more of dimethyl sulfoxide, diatrizoatc acid, ethylcncdiaminctctraacetic acid. glucamine. ss-nicotinamide adenine dinucleotide phosphate, sodium diatrizoate. and derivative of polyoxyalka1cne.

18. An aqueous cleaning solution substantially as described herein tn with reference to the Examples.

19. An aqueous cleaning solution substantially as described herein with reference to the drawings.

20. A method for increasing the transparency of biological tissues substantially as described herein with reference to the Examples.

21. A method for increasing the transparency of biological tissues c substantially as described herein with reference to the drawings.