FI20105252A0 - Menetelmä, järjestely ja tietokoneohjelmatuote biologisen tai lääketieteellisen näytteen analysoimiseen - Google Patents

Menetelmä, järjestely ja tietokoneohjelmatuote biologisen tai lääketieteellisen näytteen analysoimiseen

Info

Publication number
FI20105252A0
FI20105252A0 FI20105252A FI20105252A FI20105252A0 FI 20105252 A0 FI20105252 A0 FI 20105252A0 FI 20105252 A FI20105252 A FI 20105252A FI 20105252 A FI20105252 A FI 20105252A FI 20105252 A0 FI20105252 A0 FI 20105252A0
Authority
FI
Finland
Prior art keywords
organization
analyzing
biological
computer software
software product
Prior art date
Application number
FI20105252A
Other languages
English (en)
Swedish (sv)
Inventor
Sami Kilpinen
Kalle Ojala
Timo Ahopelto
Tommi Pisto
Original Assignee
Medisapiens Oy
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Medisapiens Oy filed Critical Medisapiens Oy
Priority to FI20105252A priority Critical patent/FI20105252A0/fi
Publication of FI20105252A0 publication Critical patent/FI20105252A0/fi
Priority to PCT/FI2011/050216 priority patent/WO2011110751A1/en
Priority to US13/583,138 priority patent/US9020934B2/en
Priority to EP11752918.0A priority patent/EP2545481B1/en
Priority to US14/665,437 priority patent/US9940383B2/en
Priority to US15/903,208 priority patent/US20180181705A1/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/28—Databases characterised by their database models, e.g. relational or object models
    • G06F16/284—Relational databases
    • G06F16/285—Clustering or classification
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/24—Querying
    • G06F16/245—Query processing
    • G06F16/2457—Query processing with adaptation to user needs
    • G06F16/24578—Query processing with adaptation to user needs using ranking
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S707/00—Data processing: database and file management or data structures
    • Y10S707/912—Applications of a database
    • Y10S707/941—Human sciences

Landscapes

  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Databases & Information Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Bioethics (AREA)
  • Chemical & Material Sciences (AREA)
  • Artificial Intelligence (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Epidemiology (AREA)
  • Software Systems (AREA)
  • Evolutionary Computation (AREA)
  • Public Health (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Wood Science & Technology (AREA)
  • Pathology (AREA)
  • Zoology (AREA)
  • Signal Processing (AREA)
  • Computational Linguistics (AREA)
  • Hospice & Palliative Care (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Oncology (AREA)
FI20105252A 2010-03-12 2010-03-12 Menetelmä, järjestely ja tietokoneohjelmatuote biologisen tai lääketieteellisen näytteen analysoimiseen FI20105252A0 (fi)

Priority Applications (6)

Application Number Priority Date Filing Date Title
FI20105252A FI20105252A0 (fi) 2010-03-12 2010-03-12 Menetelmä, järjestely ja tietokoneohjelmatuote biologisen tai lääketieteellisen näytteen analysoimiseen
PCT/FI2011/050216 WO2011110751A1 (en) 2010-03-12 2011-03-11 A method, an arrangement and a computer program product for analysing a biological or medical sample
US13/583,138 US9020934B2 (en) 2010-03-12 2011-03-11 Method, an arrangement and a computer program product for analysing a biological or medical sample
EP11752918.0A EP2545481B1 (en) 2010-03-12 2011-03-11 A method, an arrangement and a computer program product for analysing a biological or medical sample
US14/665,437 US9940383B2 (en) 2010-03-12 2015-03-23 Method, an arrangement and a computer program product for analysing a biological or medical sample
US15/903,208 US20180181705A1 (en) 2010-03-12 2018-02-23 Method, an arrangement and a computer program product for analysing a biological or medical sample

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
FI20105252A FI20105252A0 (fi) 2010-03-12 2010-03-12 Menetelmä, järjestely ja tietokoneohjelmatuote biologisen tai lääketieteellisen näytteen analysoimiseen

Publications (1)

Publication Number Publication Date
FI20105252A0 true FI20105252A0 (fi) 2010-03-12

Family

ID=42074366

Family Applications (1)

Application Number Title Priority Date Filing Date
FI20105252A FI20105252A0 (fi) 2010-03-12 2010-03-12 Menetelmä, järjestely ja tietokoneohjelmatuote biologisen tai lääketieteellisen näytteen analysoimiseen

Country Status (4)

Country Link
US (2) US9020934B2 (fi)
EP (1) EP2545481B1 (fi)
FI (1) FI20105252A0 (fi)
WO (1) WO2011110751A1 (fi)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113241183A (zh) * 2021-04-30 2021-08-10 深圳睿心智能医疗科技有限公司 治疗方案预测方法及装置

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* Cited by examiner, † Cited by third party
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US9563741B2 (en) * 2014-05-16 2017-02-07 Battelle Memorial Institute Constructing custom knowledgebases and sequence datasets with publications
US9544321B2 (en) * 2015-01-30 2017-01-10 Securonix, Inc. Anomaly detection using adaptive behavioral profiles
US20190080051A1 (en) * 2015-11-11 2019-03-14 Northeastern University Methods And Systems For Profiling Personalized Biomarker Expression Perturbations
JP7057913B2 (ja) * 2016-06-09 2022-04-21 株式会社島津製作所 ビッグデータ解析方法及び該解析方法を利用した質量分析システム
US10636512B2 (en) 2017-07-14 2020-04-28 Cofactor Genomics, Inc. Immuno-oncology applications using next generation sequencing
US20200357484A1 (en) * 2017-11-08 2020-11-12 Koninklijke Philips N.V. Method for simultaneous multivariate feature selection, feature generation, and sample clustering
CN107967410B (zh) * 2017-11-27 2021-07-30 电子科技大学 一种面向基因表达与甲基化数据的融合方法
CN118133039A (zh) * 2018-05-01 2024-06-04 谷歌有限责任公司 加速大规模相似性计算

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US7324926B2 (en) * 1999-04-09 2008-01-29 Whitehead Institute For Biomedical Research Methods for predicting chemosensitivity or chemoresistance
US20020042681A1 (en) * 2000-10-03 2002-04-11 International Business Machines Corporation Characterization of phenotypes by gene expression patterns and classification of samples based thereon
US20030225526A1 (en) * 2001-11-14 2003-12-04 Golub Todd R. Molecular cancer diagnosis using tumor gene expression signature
US20060265138A1 (en) * 2003-03-14 2006-11-23 David Bowtell Expression profiling of tumours
US8335694B2 (en) * 2004-07-09 2012-12-18 Bruce Reiner Gesture-based communication and reporting system
US20060159325A1 (en) * 2005-01-18 2006-07-20 Trestle Corporation System and method for review in studies including toxicity and risk assessment studies
WO2006135904A2 (en) 2005-06-13 2006-12-21 Kohne David E Method for producing improved results for applications which directly or indirectly utilize gene expression assay results
IL282783B2 (en) 2006-05-18 2023-09-01 Caris Mpi Inc A system and method for determining a personalized medical intervention for a disease stage
WO2008045389A2 (en) 2006-10-05 2008-04-17 Genetics Development Corporation An improved molecular diagnostic and computerized decision support system incorporating bioinformatic software for selecting the optimum treatment for human cancer
US20080274911A1 (en) 2006-11-07 2008-11-06 Burington Bart E Gene expression profiling based identification of genomic signature of high-risk multiple myeloma and uses thereof
US20100094795A1 (en) * 2006-11-30 2010-04-15 Johns Hopkins University Gene expression barcode for normal and diseased tissue classification
WO2009067655A2 (en) 2007-11-21 2009-05-28 University Of Florida Research Foundation, Inc. Methods of feature selection through local learning; breast and prostate cancer prognostic markers
FI20085302A0 (fi) * 2008-04-10 2008-04-10 Valtion Teknillinen Rinnakkaisilta mittalaitteilta tulevan biologisten signaalien mittausten korjaaminen
WO2009132928A2 (en) 2008-05-02 2009-11-05 Siemens Healthcare Diagnostics Gmbh Molecular markers for cancer prognosis

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113241183A (zh) * 2021-04-30 2021-08-10 深圳睿心智能医疗科技有限公司 治疗方案预测方法及装置
CN113241183B (zh) * 2021-04-30 2024-03-29 深圳睿心智能医疗科技有限公司 治疗方案预测方法及装置

Also Published As

Publication number Publication date
EP2545481A4 (en) 2015-09-09
US9020934B2 (en) 2015-04-28
US20130066860A1 (en) 2013-03-14
US20150199477A1 (en) 2015-07-16
EP2545481A1 (en) 2013-01-16
EP2545481B1 (en) 2020-02-19
WO2011110751A1 (en) 2011-09-15
US9940383B2 (en) 2018-04-10

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