ES2167101T3 - Procedimiento para el agrupamiento de secuencias en familias. - Google Patents
Procedimiento para el agrupamiento de secuencias en familias.Info
- Publication number
- ES2167101T3 ES2167101T3 ES98951173T ES98951173T ES2167101T3 ES 2167101 T3 ES2167101 T3 ES 2167101T3 ES 98951173 T ES98951173 T ES 98951173T ES 98951173 T ES98951173 T ES 98951173T ES 2167101 T3 ES2167101 T3 ES 2167101T3
- Authority
- ES
- Spain
- Prior art keywords
- sequences
- groups
- grouping
- families
- procedure
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Lifetime
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/30—Unsupervised data analysis
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/30—Data warehousing; Computing architectures
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10S707/00—Data processing: database and file management or data structures
- Y10S707/99931—Database or file accessing
- Y10S707/99932—Access augmentation or optimizing
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10S707/00—Data processing: database and file management or data structures
- Y10S707/99941—Database schema or data structure
- Y10S707/99944—Object-oriented database structure
- Y10S707/99945—Object-oriented database structure processing
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10S707/00—Data processing: database and file management or data structures
- Y10S707/99951—File or database maintenance
- Y10S707/99952—Coherency, e.g. same view to multiple users
- Y10S707/99953—Recoverability
Landscapes
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Medical Informatics (AREA)
- Theoretical Computer Science (AREA)
- Biophysics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Data Mining & Analysis (AREA)
- Databases & Information Systems (AREA)
- Spectroscopy & Molecular Physics (AREA)
- General Health & Medical Sciences (AREA)
- Bioethics (AREA)
- Evolutionary Biology (AREA)
- Biotechnology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Artificial Intelligence (AREA)
- Software Systems (AREA)
- Public Health (AREA)
- Evolutionary Computation (AREA)
- Epidemiology (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Peptides Or Proteins (AREA)
- Magnetic Resonance Imaging Apparatus (AREA)
- Crystals, And After-Treatments Of Crystals (AREA)
- Compression Or Coding Systems Of Tv Signals (AREA)
- Table Devices Or Equipment (AREA)
Abstract
Procedimiento para el agrupamiento de secuencias en familias, en el que { con un programa de búsqueda en banco de datos se averiguan a partir de un banco de datos de secuencias, como cantidad positiva, todas las secuencias similares a una secuencia de consulta, secuencias para las que la probabilidad de que aparezca la semejanza casualmente queda por debajo de un valor umbral preestablecido, { de esta cantidad positiva se elige al menos una secuencia como secuencia de búsqueda, { a continuación, el procedimiento de búsqueda descrito con la secuencia de búsqueda averiguada como secuencia de consulta se repite hasta que la cantidad positiva recién averiguada contenga secuencias que no estén contenidas en las cantidades positivas previamente averiguadas y haya una cantidad de corte entre la cantidad positiva de la secuencia de consulta y la cantidad positiva de la secuencia actual de búsqueda y { todas las diferentes secuencias contenidas en las cantidades positivas calculadas se extraen comoracimo.
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
DE19745665A DE19745665C1 (de) | 1997-10-17 | 1997-10-17 | Verfahren zur Eingruppierung von Sequenzen in Familien |
Publications (1)
Publication Number | Publication Date |
---|---|
ES2167101T3 true ES2167101T3 (es) | 2002-05-01 |
Family
ID=7845680
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
ES98951173T Expired - Lifetime ES2167101T3 (es) | 1997-10-17 | 1998-08-14 | Procedimiento para el agrupamiento de secuencias en familias. |
Country Status (9)
Country | Link |
---|---|
US (1) | US6304868B1 (es) |
EP (1) | EP1027669B1 (es) |
AT (1) | ATE208068T1 (es) |
CA (1) | CA2305318A1 (es) |
DE (2) | DE19745665C1 (es) |
DK (1) | DK1027669T3 (es) |
ES (1) | ES2167101T3 (es) |
PT (1) | PT1027669E (es) |
WO (1) | WO1999021107A1 (es) |
Families Citing this family (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US8473215B2 (en) | 2003-04-25 | 2013-06-25 | Leland Stanford Junior University | Method for clustering data items through distance-merging and density-merging techniques |
DE10323917A1 (de) * | 2003-05-23 | 2004-12-16 | Protagen Ag | Verfahren und System zur Aufklärung der Primärstruktur von Biopolymeren |
US20040249791A1 (en) * | 2003-06-03 | 2004-12-09 | Waters Michael D. | Method and system for developing and querying a sequence driven contextual knowledge base |
GB0400974D0 (en) * | 2004-01-16 | 2004-02-18 | Solexa Ltd | Multiple inexact matching |
US20060106545A1 (en) * | 2004-11-12 | 2006-05-18 | Jubilant Biosys Ltd. | Methods of clustering proteins |
EP2000935A3 (en) * | 2007-05-10 | 2012-07-18 | F. Hoffmann-La Roche AG | Method of processing protein peptide data and system |
CN108388771B (zh) * | 2018-01-24 | 2021-10-08 | 安徽微分基因科技有限公司 | 一种生物多样性自动分析方法 |
Family Cites Families (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
JPH0793370A (ja) * | 1993-09-27 | 1995-04-07 | Hitachi Device Eng Co Ltd | 遺伝子データベース検索システム |
US5664174A (en) * | 1995-05-09 | 1997-09-02 | International Business Machines Corporation | System and method for discovering similar time sequences in databases |
-
1997
- 1997-10-17 DE DE19745665A patent/DE19745665C1/de not_active Expired - Fee Related
-
1998
- 1998-08-14 EP EP98951173A patent/EP1027669B1/de not_active Expired - Lifetime
- 1998-08-14 DE DE59801996T patent/DE59801996D1/de not_active Expired - Fee Related
- 1998-08-14 DK DK98951173T patent/DK1027669T3/da active
- 1998-08-14 WO PCT/DE1998/002422 patent/WO1999021107A1/de active IP Right Grant
- 1998-08-14 US US09/529,018 patent/US6304868B1/en not_active Expired - Fee Related
- 1998-08-14 PT PT98951173T patent/PT1027669E/pt unknown
- 1998-08-14 AT AT98951173T patent/ATE208068T1/de not_active IP Right Cessation
- 1998-08-14 CA CA002305318A patent/CA2305318A1/en not_active Abandoned
- 1998-08-14 ES ES98951173T patent/ES2167101T3/es not_active Expired - Lifetime
Also Published As
Publication number | Publication date |
---|---|
WO1999021107A1 (de) | 1999-04-29 |
DK1027669T3 (da) | 2002-01-28 |
DE19745665C1 (de) | 1999-05-12 |
EP1027669B1 (de) | 2001-10-31 |
CA2305318A1 (en) | 1999-04-29 |
ATE208068T1 (de) | 2001-11-15 |
PT1027669E (pt) | 2002-04-29 |
DE59801996D1 (de) | 2001-12-06 |
EP1027669A1 (de) | 2000-08-16 |
US6304868B1 (en) | 2001-10-16 |
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