EP4778080A1 - Systeme und verfahren zur bestimmung der verknüpfung von sequenzauslesungen auf einer durchflusszelle - Google Patents

Systeme und verfahren zur bestimmung der verknüpfung von sequenzauslesungen auf einer durchflusszelle

Info

Publication number
EP4778080A1
EP4778080A1 EP24777117.3A EP24777117A EP4778080A1 EP 4778080 A1 EP4778080 A1 EP 4778080A1 EP 24777117 A EP24777117 A EP 24777117A EP 4778080 A1 EP4778080 A1 EP 4778080A1
Authority
EP
European Patent Office
Prior art keywords
flow cell
sequence
reads
sequence reads
read
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
EP24777117.3A
Other languages
English (en)
French (fr)
Inventor
Taher MUN
James Han
Mitchell A. Bekritsky
Vitor Ferreira ONUCHIC
Niall Anthony Gormley
Jacqueline WEIR
Jonathan Mark Boutell
Louise Fraser
Maria Martins VITORIANO
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Illumina Inc
Original Assignee
Illumina Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Illumina Inc filed Critical Illumina Inc
Publication of EP4778080A1 publication Critical patent/EP4778080A1/de
Pending legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Artificial Intelligence (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Bioethics (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Data Mining & Analysis (AREA)
  • Databases & Information Systems (AREA)
  • Epidemiology (AREA)
  • Evolutionary Computation (AREA)
  • Public Health (AREA)
  • Software Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
EP24777117.3A 2023-09-12 2024-09-10 Systeme und verfahren zur bestimmung der verknüpfung von sequenzauslesungen auf einer durchflusszelle Pending EP4778080A1 (de)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US202363582092P 2023-09-12 2023-09-12
US202363610279P 2023-12-14 2023-12-14
US202463565255P 2024-03-14 2024-03-14
PCT/US2024/045996 WO2025059045A1 (en) 2023-09-12 2024-09-10 Systems and methods for determining linkage of sequence reads on a flow cell

Publications (1)

Publication Number Publication Date
EP4778080A1 true EP4778080A1 (de) 2026-07-22

Family

ID=95021856

Family Applications (1)

Application Number Title Priority Date Filing Date
EP24777117.3A Pending EP4778080A1 (de) 2023-09-12 2024-09-10 Systeme und verfahren zur bestimmung der verknüpfung von sequenzauslesungen auf einer durchflusszelle

Country Status (3)

Country Link
EP (1) EP4778080A1 (de)
CN (1) CN121368802A (de)
WO (1) WO2025059045A1 (de)

Family Cites Families (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1991006678A1 (en) 1989-10-26 1991-05-16 Sri International Dna sequencing
US7057026B2 (en) 2001-12-04 2006-06-06 Solexa Limited Labelled nucleotides
AU2003259350A1 (en) 2002-08-23 2004-03-11 Solexa Limited Modified nucleotides for polynucleotide sequencing
US7429492B2 (en) 2002-09-09 2008-09-30 Sru Biosystems, Inc. Multiwell plates with integrated biosensors and membranes
US7311414B2 (en) 2003-06-12 2007-12-25 M. Brent Norton Ornamental lamp assembly
US7415019B2 (en) 2003-08-22 2008-08-19 Samsung Electronics Co., Ltd. Apparatus and method for collecting active route topology information in a mobile ad hoc network
US7405381B2 (en) 2005-08-23 2008-07-29 Cem, Corporation Real-time imaging and spectroscopy during microwave assisted chemistry
SG170802A1 (en) 2006-03-31 2011-05-30 Solexa Inc Systems and devices for sequence by synthesis analysis
EP2089517A4 (de) 2006-10-23 2010-10-20 Pacific Biosciences California Polymeraseenzyme und reagenzien für erweiterte nukeinsäuresequenzierung
US9080211B2 (en) 2008-10-24 2015-07-14 Epicentre Technologies Corporation Transposon end compositions and methods for modifying nucleic acids
US8148515B1 (en) 2009-06-02 2012-04-03 Biotium, Inc. Detection using a dye and a dye modifier
US9029103B2 (en) 2010-08-27 2015-05-12 Illumina Cambridge Limited Methods for sequencing polynucleotides
WO2017197300A1 (en) * 2016-05-13 2017-11-16 Dovetail Genomics Llc Recovering long-range linkage information from preserved samples

Also Published As

Publication number Publication date
CN121368802A (zh) 2026-01-20
WO2025059045A1 (en) 2025-03-20

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