EP3976828A4 - Sequenzierung nach emergenz - Google Patents
Sequenzierung nach emergenz Download PDFInfo
- Publication number
- EP3976828A4 EP3976828A4 EP20812953.6A EP20812953A EP3976828A4 EP 3976828 A4 EP3976828 A4 EP 3976828A4 EP 20812953 A EP20812953 A EP 20812953A EP 3976828 A4 EP3976828 A4 EP 3976828A4
- Authority
- EP
- European Patent Office
- Prior art keywords
- emergence
- sequencing
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
- G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
- C12Q1/6818—Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- G—PHYSICS
- G11—INFORMATION STORAGE
- G11C—STATIC STORES
- G11C13/00—Digital stores characterised by the use of storage elements not covered by groups G11C11/00, G11C23/00, or G11C25/00
- G11C13/0002—Digital stores characterised by the use of storage elements not covered by groups G11C11/00, G11C23/00, or G11C25/00 using resistive RAM [RRAM] elements
- G11C13/0009—RRAM elements whose operation depends upon chemical change
- G11C13/0014—RRAM elements whose operation depends upon chemical change comprising cells based on organic memory material
- G11C13/0019—RRAM elements whose operation depends upon chemical change comprising cells based on organic memory material comprising bio-molecules
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/30—Detection of binding sites or motifs
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/113—Nucleic acid detection characterized by the use of physical, structural and functional properties the label being electroactive, e.g. redox labels
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US16/425,929 US11427867B2 (en) | 2017-11-29 | 2019-05-29 | Sequencing by emergence |
PCT/US2020/034726 WO2020243187A1 (en) | 2019-05-29 | 2020-05-27 | Sequencing by emergence |
Publications (2)
Publication Number | Publication Date |
---|---|
EP3976828A1 EP3976828A1 (de) | 2022-04-06 |
EP3976828A4 true EP3976828A4 (de) | 2023-06-28 |
Family
ID=73553066
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP20812953.6A Pending EP3976828A4 (de) | 2019-05-29 | 2020-05-27 | Sequenzierung nach emergenz |
Country Status (7)
Country | Link |
---|---|
EP (1) | EP3976828A4 (de) |
JP (1) | JP2022534920A (de) |
KR (1) | KR20220034054A (de) |
CN (1) | CN114207149A (de) |
AU (1) | AU2020282704A1 (de) |
CA (1) | CA3140900A1 (de) |
WO (1) | WO2020243187A1 (de) |
Families Citing this family (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
JP2024513919A (ja) * | 2021-04-06 | 2024-03-27 | エックスゲノムズ コーポレーション | 核酸のエピジェネティックな修飾を検出するためのシステム、方法、及び組成物 |
EP4216220A1 (de) * | 2022-01-25 | 2023-07-26 | Leica Microsystems CMS GmbH | Datenspeichervorrichtung und verfahren zum speichern von daten |
WO2023250364A1 (en) * | 2022-06-21 | 2023-12-28 | Nautilus Subsidiary, Inc. | Method for detecting analytes at sites of optically non-resolvable distances |
CN116596933B (zh) * | 2023-07-18 | 2023-09-29 | 深圳赛陆医疗科技有限公司 | 碱基簇检测方法及装置、基因测序仪及存储介质 |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20040033510A1 (en) * | 1996-10-30 | 2004-02-19 | Institut Pasteur And Centre National De La Recherche Scientifique (Cnrs). | Method for the diagnosis of genetic diseases by molecular combing and diagnostic kit |
WO2019108853A1 (en) * | 2017-11-29 | 2019-06-06 | Xgenomes Corp. | Sequencing of nucleic acids by emergence |
Family Cites Families (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US7071324B2 (en) * | 1998-10-13 | 2006-07-04 | Brown University Research Foundation | Systems and methods for sequencing by hybridization |
CA2492007A1 (en) * | 2001-07-15 | 2003-01-30 | Keck Graduate Institute | Amplification of nucleic acid fragments using nicking agents |
US7276338B2 (en) * | 2003-11-17 | 2007-10-02 | Jacobson Joseph M | Nucleotide sequencing via repetitive single molecule hybridization |
CN108603227A (zh) * | 2015-11-18 | 2018-09-28 | 卡利姆·U·米尔 | 超分辨率测序 |
-
2020
- 2020-05-27 KR KR1020217042217A patent/KR20220034054A/ko unknown
- 2020-05-27 CA CA3140900A patent/CA3140900A1/en active Pending
- 2020-05-27 WO PCT/US2020/034726 patent/WO2020243187A1/en unknown
- 2020-05-27 CN CN202080055484.3A patent/CN114207149A/zh active Pending
- 2020-05-27 JP JP2021570322A patent/JP2022534920A/ja active Pending
- 2020-05-27 AU AU2020282704A patent/AU2020282704A1/en active Pending
- 2020-05-27 EP EP20812953.6A patent/EP3976828A4/de active Pending
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20040033510A1 (en) * | 1996-10-30 | 2004-02-19 | Institut Pasteur And Centre National De La Recherche Scientifique (Cnrs). | Method for the diagnosis of genetic diseases by molecular combing and diagnostic kit |
WO2019108853A1 (en) * | 2017-11-29 | 2019-06-06 | Xgenomes Corp. | Sequencing of nucleic acids by emergence |
Non-Patent Citations (7)
Title |
---|
C. VRANKEN ET AL: "Super-resolution optical DNA Mapping via DNA methyltransferase-directed click chemistry", NUCLEIC ACIDS RESEARCH, vol. 42, no. 7, 21 January 2014 (2014-01-21), GB, pages e50 - e50, XP055230984, ISSN: 0305-1048, DOI: 10.1093/nar/gkt1406 * |
GLENN E. PALOMAKI ET AL: "DNA sequencing of maternal plasma to detect Down syndrome: An international clinical validation study", GENETICS IN MEDICINE, vol. 13, no. 11, 1 November 2011 (2011-11-01), New York, pages 913 - 920, XP055228393, ISSN: 1098-3600, DOI: 10.1097/GIM.0b013e3182368a0e * |
NAZARI ZEINAB ESMAIL ET AL: "Molecular Combing of DNA: Methods and Applications", JOURNAL OF SELF ASSEMBLY AND MOLECULAR ELECTRONICS, 1 January 2013 (2013-01-01), XP093038930, ISSN: 2245-4551, Retrieved from the Internet <URL:https://www.journal.riverpublishers.com/index.php/jsame/article/download/190/236> DOI: 10.13052/same2245-4551.116 * |
NIEVES DANIEL ET AL: "DNA-Based Super-Resolution Microscopy: DNA-PAINT", GENES, vol. 9, no. 12, 11 December 2018 (2018-12-11), pages 621, XP093040230, Retrieved from the Internet <URL:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6315775/pdf/genes-09-00621.pdf> DOI: 10.3390/genes9120621 * |
PAUL M LIZARDI: "Next-generation sequencing-by-hybridization", NATURE BIOTECHNOLOGY, vol. 26, no. 6, 1 June 2008 (2008-06-01), pages 649 - 650, XP055154438, DOI: 10.1038/nbt0608-649 * |
PIHLAK A ET AL: "Rapid genome sequencing with short universal tiling probes", NATURE BIOTECHNOLOGY, NATURE PUBLISHING GROUP US, NEW YORK, vol. 26, no. 6, 1 June 2008 (2008-06-01), pages 676 - 684, XP002601637, ISSN: 1087-0156, [retrieved on 20080525], DOI: 10.1038/NBT1405 * |
See also references of WO2020243187A1 * |
Also Published As
Publication number | Publication date |
---|---|
AU2020282704A1 (en) | 2022-01-27 |
CA3140900A1 (en) | 2020-12-03 |
JP2022534920A (ja) | 2022-08-04 |
WO2020243187A1 (en) | 2020-12-03 |
KR20220034054A (ko) | 2022-03-17 |
CN114207149A (zh) | 2022-03-18 |
EP3976828A1 (de) | 2022-04-06 |
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Legal Events
Date | Code | Title | Description |
---|---|---|---|
STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: THE INTERNATIONAL PUBLICATION HAS BEEN MADE |
|
PUAI | Public reference made under article 153(3) epc to a published international application that has entered the european phase |
Free format text: ORIGINAL CODE: 0009012 |
|
STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: REQUEST FOR EXAMINATION WAS MADE |
|
17P | Request for examination filed |
Effective date: 20211222 |
|
AK | Designated contracting states |
Kind code of ref document: A1 Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR |
|
DAV | Request for validation of the european patent (deleted) | ||
DAX | Request for extension of the european patent (deleted) | ||
A4 | Supplementary search report drawn up and despatched |
Effective date: 20230530 |
|
RIC1 | Information provided on ipc code assigned before grant |
Ipc: G11C 13/00 20060101ALI20230524BHEP Ipc: G11C 13/04 20060101ALI20230524BHEP Ipc: G16B 25/20 20190101ALI20230524BHEP Ipc: C12Q 1/6869 20180101ALI20230524BHEP Ipc: G16B 20/30 20190101ALI20230524BHEP Ipc: C12Q 1/6874 20180101AFI20230524BHEP |