EP3894583A4 - AMPLIFICATION SYSTEMS AND METHODS FOR MERFISH AND OTHER APPLICATIONS - Google Patents
AMPLIFICATION SYSTEMS AND METHODS FOR MERFISH AND OTHER APPLICATIONS Download PDFInfo
- Publication number
- EP3894583A4 EP3894583A4 EP19894439.9A EP19894439A EP3894583A4 EP 3894583 A4 EP3894583 A4 EP 3894583A4 EP 19894439 A EP19894439 A EP 19894439A EP 3894583 A4 EP3894583 A4 EP 3894583A4
- Authority
- EP
- European Patent Office
- Prior art keywords
- merfish
- applications
- methods
- amplification systems
- amplification
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
- C12Q1/682—Signal amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6841—In situ hybridisation
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/107—Nucleic acid detection characterized by the use of physical, structural and functional properties fluorescence
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
- G01N2021/6439—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" with indicators, stains, dyes, tags, labels, marks
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Engineering & Computer Science (AREA)
- Immunology (AREA)
- Analytical Chemistry (AREA)
- General Health & Medical Sciences (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Genetics & Genomics (AREA)
- Biophysics (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- General Engineering & Computer Science (AREA)
- General Physics & Mathematics (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201862779333P | 2018-12-13 | 2018-12-13 | |
| PCT/US2019/065857 WO2020123742A1 (en) | 2018-12-13 | 2019-12-12 | Amplification methods and systems for merfish and other applications |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| EP3894583A1 EP3894583A1 (en) | 2021-10-20 |
| EP3894583A4 true EP3894583A4 (en) | 2022-11-09 |
Family
ID=71077538
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| EP19894439.9A Pending EP3894583A4 (en) | 2018-12-13 | 2019-12-12 | AMPLIFICATION SYSTEMS AND METHODS FOR MERFISH AND OTHER APPLICATIONS |
Country Status (9)
| Country | Link |
|---|---|
| US (1) | US12460250B2 (en) |
| EP (1) | EP3894583A4 (en) |
| JP (2) | JP7660897B2 (en) |
| KR (1) | KR20210104076A (en) |
| CN (1) | CN113366116A (en) |
| AU (1) | AU2019398322B2 (en) |
| CA (1) | CA3122569A1 (en) |
| SG (1) | SG11202106263XA (en) |
| WO (1) | WO2020123742A1 (en) |
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| ES2968004T3 (en) | 2014-07-30 | 2024-05-06 | Harvard College | Building probe libraries |
| WO2017222453A1 (en) | 2016-06-21 | 2017-12-28 | Hauling Thomas | Nucleic acid sequencing |
| WO2018218150A1 (en) | 2017-05-26 | 2018-11-29 | President And Fellows Of Harvard College | Systems and methods for high-throughput image-based screening |
| EP4589017A3 (en) | 2017-10-06 | 2025-10-08 | 10x Genomics, Inc. | Rna templated ligation |
| CN113366116A (en) | 2018-12-13 | 2021-09-07 | 哈佛学院院长及董事 | Amplification methods and systems for MERISH and other applications |
| AU2020282024A1 (en) | 2019-05-31 | 2021-11-11 | 10X Genomics, Inc. | Method of detecting target nucleic acid molecules |
| WO2021003258A1 (en) * | 2019-07-01 | 2021-01-07 | Davinci Bio, Inc. | High capacity molecule detection |
| GB201919032D0 (en) | 2019-12-20 | 2020-02-05 | Cartana Ab | Method of detecting an analyte |
| US20230348958A1 (en) * | 2019-12-30 | 2023-11-02 | President And Fellows Of Harvard College | Genome-scale imaging of the 3d organization and transcriptional activity of chromatin |
| US12110548B2 (en) | 2020-02-03 | 2024-10-08 | 10X Genomics, Inc. | Bi-directional in situ analysis |
| US12215379B2 (en) | 2020-02-17 | 2025-02-04 | 10X Genomics, Inc. | In situ analysis of chromatin interaction |
| JP2023514749A (en) | 2020-02-21 | 2023-04-07 | １０エックス ジェノミクス インコーポレイテッド | Methods and compositions for integrated in situ spatial assays |
| US12188085B2 (en) | 2020-03-05 | 2025-01-07 | 10X Genomics, Inc. | Three-dimensional spatial transcriptomics with sequencing readout |
| US12209273B2 (en) | 2020-06-12 | 2025-01-28 | 10X Genomics, Inc. | Nucleic acid assays using click chemistry bioconjugation |
| US20240279736A1 (en) * | 2020-06-18 | 2024-08-22 | Resolve Biosciences Gmbh | Multiplex method for detecting different analytes and different subgroups/variations of an analyte in a sample |
| US11995833B2 (en) * | 2020-07-31 | 2024-05-28 | The Joan and Irwin Jacobs Technion-Cornell Institute | System and method for on-phase microscopy |
| US12297499B2 (en) | 2020-08-17 | 2025-05-13 | 10X Genomics, Inc. | Multicomponent nucleic acid probes for sample analysis |
| US20220084628A1 (en) * | 2020-09-16 | 2022-03-17 | 10X Genomics, Inc. | Methods and systems for barcode error correction |
| US20220092288A1 (en) * | 2020-09-22 | 2022-03-24 | Applied Materials, Inc. | Processing of images from fluorescent in-situ hybridization using multiplexed fluorescent switching |
| US12071667B2 (en) | 2020-11-04 | 2024-08-27 | 10X Genomics, Inc. | Sequence analysis using meta-stable nucleic acid molecules |
| EP4012046A1 (en) | 2020-12-11 | 2022-06-15 | 10X Genomics, Inc. | Methods and compositions for multimodal in situ analysis |
| TW202239968A (en) * | 2020-12-21 | 2022-10-16 | 美商應用材料股份有限公司 | Standardization of merfish imaging systems |
| US12060603B2 (en) | 2021-01-19 | 2024-08-13 | 10X Genomics, Inc. | Methods for internally controlled in situ assays using padlock probes |
| US12275984B2 (en) | 2021-03-02 | 2025-04-15 | 10X Genomics, Inc. | Sequential hybridization and quenching |
| EP4347874A1 (en) * | 2021-05-24 | 2024-04-10 | California Institute of Technology | Linked amplification tethered with exponential radiance |
| WO2022256324A1 (en) * | 2021-06-01 | 2022-12-08 | 10X Genomics, Inc. | Methods and compositions for analyte detection and probe resolution |
| WO2022256422A1 (en) | 2021-06-02 | 2022-12-08 | 10X Genomics, Inc. | Sample analysis using asymmetric circularizable probes |
| US20230012607A1 (en) | 2021-07-09 | 2023-01-19 | 10X Genomics, Inc. | Methods for detecting analytes using sparse labelling |
| CN117651855A (en) | 2021-07-13 | 2024-03-05 | 10X基因组学有限公司 | Method for preparing polymeric matrices with controllable thickness |
| US12139751B2 (en) | 2021-07-30 | 2024-11-12 | 10X Genomics, Inc. | Circularizable probes for in situ analysis |
| ES2988400T3 (en) | 2021-07-30 | 2024-11-20 | 10X Genomics Inc | Methods and compositions for synchronizing reactions in situ |
| US12529096B2 (en) | 2021-08-03 | 2026-01-20 | 10X Genomics, Inc. | Stabilization and/or compaction of nucleic acid structures |
| US12460251B2 (en) | 2021-08-03 | 2025-11-04 | 10X Genomics, Inc. | Stabilization and/or compaction of nucleic acid molecules |
| US12391984B2 (en) | 2021-08-03 | 2025-08-19 | 10X Genomics, Inc. | Compositions and methods for rolling circle amplification |
| WO2023015192A1 (en) | 2021-08-03 | 2023-02-09 | 10X Genomics, Inc. | Nucleic acid concatemers and methods for stabilizing and/or compacting the same |
| EP4446426B1 (en) | 2021-08-16 | 2026-03-04 | 10X Genomics, Inc. | Probes comprising a split barcode region and methods of use |
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| US20230242974A1 (en) | 2021-12-27 | 2023-08-03 | 10X Genomics, Inc. | Methods and compositions for rolling circle amplification |
| EP4466376B1 (en) | 2022-01-21 | 2026-03-04 | 10X Genomics, Inc. | Multiple readout signals for analyzing a sample |
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| EP4490737A1 (en) | 2022-03-08 | 2025-01-15 | 10X Genomics, Inc. | In situ code design methods for minimizing optical crowding |
| EP4500481A1 (en) | 2022-03-29 | 2025-02-05 | 10X Genomics, Inc. | Spectral unmixing combined with decoding for super-multiplexed in situ analysis |
| CN119032271A (en) | 2022-04-01 | 2024-11-26 | 10X基因组学有限公司 | Compositions and methods for targeted masking of autofluorescence |
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