EP3426774A4 - Transposase-mediated imaging of the accessible genome - Google Patents
Transposase-mediated imaging of the accessible genome Download PDFInfo
- Publication number
- EP3426774A4 EP3426774A4 EP17764148.7A EP17764148A EP3426774A4 EP 3426774 A4 EP3426774 A4 EP 3426774A4 EP 17764148 A EP17764148 A EP 17764148A EP 3426774 A4 EP3426774 A4 EP 3426774A4
- Authority
- EP
- European Patent Office
- Prior art keywords
- transposase
- mediated imaging
- accessible genome
- genome
- accessible
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/14—Hydrolases (3)
- C12N9/16—Hydrolases (3) acting on ester bonds (3.1)
- C12N9/22—Ribonucleases RNAses, DNAses
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K1/00—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length
- C07K1/13—Labelling of peptides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/87—Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
- C12N15/90—Stable introduction of foreign DNA into chromosome
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/60—Fusion polypeptide containing spectroscopic/fluorescent detection, e.g. green fluorescent protein [GFP]
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Molecular Biology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Microbiology (AREA)
- Biomedical Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Medicinal Chemistry (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Immunology (AREA)
- Plant Pathology (AREA)
- Mycology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Peptides Or Proteins (AREA)
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP21153694.1A EP3868879A1 (en) | 2016-03-10 | 2017-03-09 | Transposase-mediated imaging of the accessible genome |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201662306504P | 2016-03-10 | 2016-03-10 | |
| PCT/US2017/021677 WO2017156336A1 (en) | 2016-03-10 | 2017-03-09 | Transposase-mediated imaging of the accessible genome |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| EP21153694.1A Division EP3868879A1 (en) | 2016-03-10 | 2017-03-09 | Transposase-mediated imaging of the accessible genome |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| EP3426774A1 EP3426774A1 (en) | 2019-01-16 |
| EP3426774A4 true EP3426774A4 (en) | 2019-08-14 |
Family
ID=59789896
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| EP17764148.7A Withdrawn EP3426774A4 (en) | 2016-03-10 | 2017-03-09 | Transposase-mediated imaging of the accessible genome |
| EP21153694.1A Pending EP3868879A1 (en) | 2016-03-10 | 2017-03-09 | Transposase-mediated imaging of the accessible genome |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| EP21153694.1A Pending EP3868879A1 (en) | 2016-03-10 | 2017-03-09 | Transposase-mediated imaging of the accessible genome |
Country Status (5)
| Country | Link |
|---|---|
| US (2) | US11680253B2 (en) |
| EP (2) | EP3426774A4 (en) |
| CN (1) | CN109072206A (en) |
| SG (1) | SG11201807444PA (en) |
| WO (1) | WO2017156336A1 (en) |
Families Citing this family (129)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US9701998B2 (en) | 2012-12-14 | 2017-07-11 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10752949B2 (en) | 2012-08-14 | 2020-08-25 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US11591637B2 (en) | 2012-08-14 | 2023-02-28 | 10X Genomics, Inc. | Compositions and methods for sample processing |
| US10323279B2 (en) | 2012-08-14 | 2019-06-18 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10400280B2 (en) | 2012-08-14 | 2019-09-03 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10221442B2 (en) | 2012-08-14 | 2019-03-05 | 10X Genomics, Inc. | Compositions and methods for sample processing |
| US9951386B2 (en) | 2014-06-26 | 2018-04-24 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10273541B2 (en) | 2012-08-14 | 2019-04-30 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| CN113528634A (en) | 2012-08-14 | 2021-10-22 | 10X基因组学有限公司 | Microcapsule compositions and methods |
| US10533221B2 (en) | 2012-12-14 | 2020-01-14 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| EP3567116A1 (en) | 2012-12-14 | 2019-11-13 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| KR20200140929A (en) | 2013-02-08 | 2020-12-16 | 10엑스 제노믹스, 인크. | Polynucleotide barcode generation |
| US9824068B2 (en) | 2013-12-16 | 2017-11-21 | 10X Genomics, Inc. | Methods and apparatus for sorting data |
| AU2015243445B2 (en) | 2014-04-10 | 2020-05-28 | 10X Genomics, Inc. | Fluidic devices, systems, and methods for encapsulating and partitioning reagents, and applications of same |
| CN113249435B (en) | 2014-06-26 | 2024-09-03 | 10X基因组学有限公司 | Method for analyzing nucleic acid from single cell or cell population |
| AU2015339148B2 (en) | 2014-10-29 | 2022-03-10 | 10X Genomics, Inc. | Methods and compositions for targeted nucleic acid sequencing |
| US9975122B2 (en) | 2014-11-05 | 2018-05-22 | 10X Genomics, Inc. | Instrument systems for integrated sample processing |
| WO2016114970A1 (en) | 2015-01-12 | 2016-07-21 | 10X Genomics, Inc. | Processes and systems for preparing nucleic acid sequencing libraries and libraries prepared using same |
| WO2016138148A1 (en) | 2015-02-24 | 2016-09-01 | 10X Genomics, Inc. | Methods for targeted nucleic acid sequence coverage |
| US10697000B2 (en) | 2015-02-24 | 2020-06-30 | 10X Genomics, Inc. | Partition processing methods and systems |
| EP4321627A3 (en) | 2015-04-10 | 2024-04-17 | 10x Genomics Sweden AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
| US11408890B2 (en) | 2015-04-14 | 2022-08-09 | Massachusetts Institute Of Technology | Iterative expansion microscopy |
| US11371094B2 (en) | 2015-11-19 | 2022-06-28 | 10X Genomics, Inc. | Systems and methods for nucleic acid processing using degenerate nucleotides |
| WO2017096158A1 (en) | 2015-12-04 | 2017-06-08 | 10X Genomics, Inc. | Methods and compositions for nucleic acid analysis |
| EP3414341A4 (en) | 2016-02-11 | 2019-10-09 | 10X Genomics, Inc. | Systems, methods, and media for de novo assembly of whole genome sequence data |
| WO2017197338A1 (en) | 2016-05-13 | 2017-11-16 | 10X Genomics, Inc. | Microfluidic systems and methods of use |
| KR102475710B1 (en) * | 2016-07-22 | 2022-12-08 | 오레곤 헬스 앤드 사이언스 유니버시티 | Single-cell whole-genome libraries and combinatorial indexing methods for their preparation |
| US10815525B2 (en) | 2016-12-22 | 2020-10-27 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10550429B2 (en) | 2016-12-22 | 2020-02-04 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10011872B1 (en) | 2016-12-22 | 2018-07-03 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| EP4310183A3 (en) | 2017-01-30 | 2024-02-21 | 10X Genomics, Inc. | Methods and systems for droplet-based single cell barcoding |
| US10995333B2 (en) | 2017-02-06 | 2021-05-04 | 10X Genomics, Inc. | Systems and methods for nucleic acid preparation |
| WO2018157048A1 (en) | 2017-02-24 | 2018-08-30 | Massachusetts Institute Of Technology | Methods for examining podocyte foot processes in human renal samples using conventional optical microscopy |
| WO2018157074A1 (en) | 2017-02-24 | 2018-08-30 | Massachusetts Institute Of Technology | Methods for diagnosing neoplastic lesions |
| CN109526228B (en) | 2017-05-26 | 2022-11-25 | 10X基因组学有限公司 | Single cell analysis of transposase accessible chromatin |
| US20180340169A1 (en) | 2017-05-26 | 2018-11-29 | 10X Genomics, Inc. | Single cell analysis of transposase accessible chromatin |
| US11180804B2 (en) * | 2017-07-25 | 2021-11-23 | Massachusetts Institute Of Technology | In situ ATAC sequencing |
| ES2924185T3 (en) * | 2017-09-25 | 2022-10-05 | Fred Hutchinson Cancer Center | High-efficiency in situ profiles targeting the entire genome |
| US10837047B2 (en) | 2017-10-04 | 2020-11-17 | 10X Genomics, Inc. | Compositions, methods, and systems for bead formation using improved polymers |
| US10590244B2 (en) | 2017-10-04 | 2020-03-17 | 10X Genomics, Inc. | Compositions, methods, and systems for bead formation using improved polymers |
| EP3692152A4 (en) | 2017-10-04 | 2021-12-01 | The Broad Institute, Inc. | Methods and compositions for altering function and structure of chromatin loops and/or domains |
| US11732257B2 (en) | 2017-10-23 | 2023-08-22 | Massachusetts Institute Of Technology | Single cell sequencing libraries of genomic transcript regions of interest in proximity to barcodes, and genotyping of said libraries |
| WO2019084043A1 (en) | 2017-10-26 | 2019-05-02 | 10X Genomics, Inc. | Methods and systems for nuclecic acid preparation and chromatin analysis |
| US20190127731A1 (en) * | 2017-10-26 | 2019-05-02 | 10X Genomics, Inc. | Methods for preparing nucleic acid molecules |
| CN111479631B (en) | 2017-10-27 | 2022-02-22 | 10X基因组学有限公司 | Methods and systems for sample preparation and analysis |
| CN111051523B (en) | 2017-11-15 | 2024-03-19 | 10X基因组学有限公司 | Functionalized gel beads |
| US10829815B2 (en) | 2017-11-17 | 2020-11-10 | 10X Genomics, Inc. | Methods and systems for associating physical and genetic properties of biological particles |
| WO2019108851A1 (en) | 2017-11-30 | 2019-06-06 | 10X Genomics, Inc. | Systems and methods for nucleic acid preparation and analysis |
| WO2019113506A1 (en) | 2017-12-07 | 2019-06-13 | The Broad Institute, Inc. | Methods and compositions for multiplexing single cell and single nuclei sequencing |
| CN111712579B (en) | 2017-12-22 | 2024-10-15 | 10X基因组学有限公司 | Systems and methods for processing nucleic acid molecules from one or more cells |
| US11873374B2 (en) | 2018-02-06 | 2024-01-16 | Massachusetts Institute Of Technology | Swellable and structurally homogenous hydrogels and methods of use thereof |
| WO2019157529A1 (en) | 2018-02-12 | 2019-08-15 | 10X Genomics, Inc. | Methods characterizing multiple analytes from individual cells or cell populations |
| US11639928B2 (en) | 2018-02-22 | 2023-05-02 | 10X Genomics, Inc. | Methods and systems for characterizing analytes from individual cells or cell populations |
| WO2019169028A1 (en) | 2018-02-28 | 2019-09-06 | 10X Genomics, Inc. | Transcriptome sequencing through random ligation |
| US11841371B2 (en) | 2018-03-13 | 2023-12-12 | The Broad Institute, Inc. | Proteomics and spatial patterning using antenna networks |
| WO2019195166A1 (en) | 2018-04-06 | 2019-10-10 | 10X Genomics, Inc. | Systems and methods for quality control in single cell processing |
| WO2019209657A1 (en) * | 2018-04-23 | 2019-10-31 | The Board Of Trustees Of The Leland Stanford Junior University | Labeling of molecular probes with nonmetal and metalloid isotopes for multiplexed high resolution analysis |
| US11957695B2 (en) | 2018-04-26 | 2024-04-16 | The Broad Institute, Inc. | Methods and compositions targeting glucocorticoid signaling for modulating immune responses |
| ES2945191T3 (en) | 2018-05-03 | 2023-06-29 | Becton Dickinson Co | High-throughput multi-omics sample analysis |
| US20210386829A1 (en) | 2018-05-04 | 2021-12-16 | The Broad Institute, Inc. | Compositions and methods for modulating cgrp signaling to regulate innate lymphoid cell inflammatory responses |
| WO2019217758A1 (en) | 2018-05-10 | 2019-11-14 | 10X Genomics, Inc. | Methods and systems for molecular library generation |
| AU2019270185A1 (en) | 2018-05-17 | 2020-01-16 | Illumina, Inc. | High-throughput single-cell sequencing with reduced amplification bias |
| US11414701B2 (en) | 2018-05-24 | 2022-08-16 | The Broad Institute, Inc. | Multimodal readouts for quantifying and sequencing nucleic acids in single cells |
| US11932899B2 (en) | 2018-06-07 | 2024-03-19 | 10X Genomics, Inc. | Methods and systems for characterizing nucleic acid molecules |
| US12012633B2 (en) | 2018-06-11 | 2024-06-18 | The Broad Institute, Inc. | Lineage tracing using mitochondrial genome mutations and single cell genomics |
| US11703427B2 (en) | 2018-06-25 | 2023-07-18 | 10X Genomics, Inc. | Methods and systems for cell and bead processing |
| US20200032335A1 (en) | 2018-07-27 | 2020-01-30 | 10X Genomics, Inc. | Systems and methods for metabolome analysis |
| US20210324376A1 (en) * | 2018-08-14 | 2021-10-21 | Trustees Of Dartmouth College | Arrays targeting differentially accessible chromatin regions |
| US12065688B2 (en) | 2018-08-20 | 2024-08-20 | 10X Genomics, Inc. | Compositions and methods for cellular processing |
| US11519033B2 (en) * | 2018-08-28 | 2022-12-06 | 10X Genomics, Inc. | Method for transposase-mediated spatial tagging and analyzing genomic DNA in a biological sample |
| CN113767175A (en) * | 2018-08-28 | 2021-12-07 | 10X基因组学股份有限公司 | Increasing spatial array resolution |
| US20220411783A1 (en) | 2018-10-12 | 2022-12-29 | The Broad Institute, Inc. | Method for extracting nuclei or whole cells from formalin-fixed paraffin-embedded tissues |
| US11459607B1 (en) | 2018-12-10 | 2022-10-04 | 10X Genomics, Inc. | Systems and methods for processing-nucleic acid molecules from a single cell using sequential co-partitioning and composite barcodes |
| US20220064630A1 (en) | 2018-12-10 | 2022-03-03 | 10X Genomics, Inc. | Resolving spatial arrays using deconvolution |
| WO2020131626A1 (en) * | 2018-12-17 | 2020-06-25 | Illumina, Inc. | Methods and means for preparing a library for sequencing |
| US11649485B2 (en) | 2019-01-06 | 2023-05-16 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
| US11926867B2 (en) | 2019-01-06 | 2024-03-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
| US11845983B1 (en) | 2019-01-09 | 2023-12-19 | 10X Genomics, Inc. | Methods and systems for multiplexing of droplet based assays |
| WO2020160044A1 (en) | 2019-01-28 | 2020-08-06 | The Broad Institute, Inc. | In-situ spatial transcriptomics |
| WO2020168013A1 (en) | 2019-02-12 | 2020-08-20 | 10X Genomics, Inc. | Methods for processing nucleic acid molecules |
| US11851683B1 (en) | 2019-02-12 | 2023-12-26 | 10X Genomics, Inc. | Methods and systems for selective analysis of cellular samples |
| US11467153B2 (en) | 2019-02-12 | 2022-10-11 | 10X Genomics, Inc. | Methods for processing nucleic acid molecules |
| US11655499B1 (en) | 2019-02-25 | 2023-05-23 | 10X Genomics, Inc. | Detection of sequence elements in nucleic acid molecules |
| EP3938537A1 (en) | 2019-03-11 | 2022-01-19 | 10X Genomics, Inc. | Systems and methods for processing optically tagged beads |
| WO2020186101A1 (en) | 2019-03-12 | 2020-09-17 | The Broad Institute, Inc. | Detection means, compositions and methods for modulating synovial sarcoma cells |
| EP3937969A1 (en) | 2019-03-14 | 2022-01-19 | The Broad Institute, Inc. | Compositions and methods for modulating cgrp signaling to regulate intestinal innate lymphoid cells |
| US20220142948A1 (en) | 2019-03-18 | 2022-05-12 | The Broad Institute, Inc. | Compositions and methods for modulating metabolic regulators of t cell pathogenicity |
| US20220152148A1 (en) | 2019-03-18 | 2022-05-19 | The Broad Institute, Inc. | Modulation of type 2 immunity by targeting clec-2 signaling |
| CN109897885A (en) * | 2019-03-20 | 2019-06-18 | 嘉兴菲沙基因信息有限公司 | A kind of library constructing method suitable for cell line and animal tissue's ATAC-seq sequencing technologies |
| WO2020243579A1 (en) | 2019-05-30 | 2020-12-03 | 10X Genomics, Inc. | Methods of detecting spatial heterogeneity of a biological sample |
| CN112176041A (en) * | 2019-07-01 | 2021-01-05 | 深圳华大生命科学研究院 | Detection method, reagent and application of epigenetic modification |
| US20220282333A1 (en) | 2019-08-13 | 2022-09-08 | The General Hospital Corporation | Methods for predicting outcomes of checkpoint inhibition and treatment thereof |
| US11793787B2 (en) | 2019-10-07 | 2023-10-24 | The Broad Institute, Inc. | Methods and compositions for enhancing anti-tumor immunity by targeting steroidogenesis |
| CN112824534A (en) * | 2019-11-20 | 2021-05-21 | 武汉华大医学检验所有限公司 | Method for amplifying target region of nucleic acid, library construction and sequencing method and kit |
| US11802822B2 (en) | 2019-12-05 | 2023-10-31 | Massachusetts Institute Of Technology | Multiplexed expansion (MultiExM) pathology |
| US20230044602A1 (en) | 2019-12-20 | 2023-02-09 | EDWARD Via COLLEGE OF OSTEOPATHIC MEDICINE | Cancer signatures, methods of generating cancer signatures, and uses thereof |
| ES2982420T3 (en) | 2019-12-23 | 2024-10-16 | 10X Genomics Inc | Methods for spatial analysis using RNA-templated ligation |
| US20210190770A1 (en) | 2019-12-23 | 2021-06-24 | 10X Genomics, Inc. | Compositions and methods for using fixed biological samples in partition-based assays |
| US11702693B2 (en) | 2020-01-21 | 2023-07-18 | 10X Genomics, Inc. | Methods for printing cells and generating arrays of barcoded cells |
| US11732299B2 (en) | 2020-01-21 | 2023-08-22 | 10X Genomics, Inc. | Spatial assays with perturbed cells |
| US12076701B2 (en) | 2020-01-31 | 2024-09-03 | 10X Genomics, Inc. | Capturing oligonucleotides in spatial transcriptomics |
| US11898205B2 (en) | 2020-02-03 | 2024-02-13 | 10X Genomics, Inc. | Increasing capture efficiency of spatial assays |
| US12110541B2 (en) | 2020-02-03 | 2024-10-08 | 10X Genomics, Inc. | Methods for preparing high-resolution spatial arrays |
| US11732300B2 (en) | 2020-02-05 | 2023-08-22 | 10X Genomics, Inc. | Increasing efficiency of spatial analysis in a biological sample |
| US11891654B2 (en) | 2020-02-24 | 2024-02-06 | 10X Genomics, Inc. | Methods of making gene expression libraries |
| CN111487399B (en) * | 2020-03-26 | 2021-09-17 | 湖南师范大学 | Application of protein molecular marker in research on fish germ cell development |
| CN115916999A (en) | 2020-04-22 | 2023-04-04 | 10X基因组学有限公司 | Methods for spatial analysis using targeted RNA depletion |
| US11851700B1 (en) | 2020-05-13 | 2023-12-26 | 10X Genomics, Inc. | Methods, kits, and compositions for processing extracellular molecules |
| AU2021275906A1 (en) | 2020-05-22 | 2022-12-22 | 10X Genomics, Inc. | Spatial analysis to detect sequence variants |
| EP4153775B1 (en) | 2020-05-22 | 2024-07-24 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
| WO2021242834A1 (en) | 2020-05-26 | 2021-12-02 | 10X Genomics, Inc. | Method for resetting an array |
| US12031177B1 (en) | 2020-06-04 | 2024-07-09 | 10X Genomics, Inc. | Methods of enhancing spatial resolution of transcripts |
| EP4421186A3 (en) | 2020-06-08 | 2024-09-18 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
| EP4446430A2 (en) | 2020-06-10 | 2024-10-16 | 10X Genomics, Inc. | Methods for determining a location of an analyte in a biological sample |
| WO2021263111A1 (en) | 2020-06-25 | 2021-12-30 | 10X Genomics, Inc. | Spatial analysis of dna methylation |
| US11981960B1 (en) | 2020-07-06 | 2024-05-14 | 10X Genomics, Inc. | Spatial analysis utilizing degradable hydrogels |
| US11761038B1 (en) | 2020-07-06 | 2023-09-19 | 10X Genomics, Inc. | Methods for identifying a location of an RNA in a biological sample |
| CN111996598A (en) * | 2020-08-11 | 2020-11-27 | 杭州瀚因生命科技有限公司 | Method for establishing library of accessibility of single-cell chromatin |
| US11981958B1 (en) | 2020-08-20 | 2024-05-14 | 10X Genomics, Inc. | Methods for spatial analysis using DNA capture |
| EP4211238A4 (en) * | 2020-09-11 | 2024-09-18 | Fred Hutchinson Cancer Center | Improved high efficiency targeted in situ genome-wide profiling |
| US11926822B1 (en) | 2020-09-23 | 2024-03-12 | 10X Genomics, Inc. | Three-dimensional spatial analysis |
| US12084715B1 (en) | 2020-11-05 | 2024-09-10 | 10X Genomics, Inc. | Methods and systems for reducing artifactual antisense products |
| US11827935B1 (en) | 2020-11-19 | 2023-11-28 | 10X Genomics, Inc. | Methods for spatial analysis using rolling circle amplification and detection probes |
| EP4121555A1 (en) | 2020-12-21 | 2023-01-25 | 10X Genomics, Inc. | Methods, compositions, and systems for capturing probes and/or barcodes |
| EP4298244A1 (en) | 2021-02-23 | 2024-01-03 | 10X Genomics, Inc. | Probe-based analysis of nucleic acids and proteins |
| WO2022256503A1 (en) | 2021-06-03 | 2022-12-08 | 10X Genomics, Inc. | Methods, compositions, kits, and systems for enhancing analyte capture for spatial analysis |
| WO2023034489A1 (en) | 2021-09-01 | 2023-03-09 | 10X Genomics, Inc. | Methods, compositions, and kits for blocking a capture probe on a spatial array |
| CN113774052A (en) * | 2021-09-30 | 2021-12-10 | 首都医科大学附属北京安贞医院 | mtDNA extraction and library construction reagent |
| WO2024076728A1 (en) | 2022-10-06 | 2024-04-11 | Dana-Farber Cancer Institute, Inc. | Cyclic nucleotides and uses thereof |
Family Cites Families (16)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP0923650B1 (en) | 1996-06-06 | 2007-03-07 | Solexa, Inc | Sequencing by ligation of encoded adaptors |
| US6846622B1 (en) * | 1999-05-26 | 2005-01-25 | Oregon Health & Science University | Tagged epitope protein transposable element |
| US7135296B2 (en) | 2000-12-28 | 2006-11-14 | Mds Inc. | Elemental analysis of tagged biologically active materials |
| US7479630B2 (en) | 2004-03-25 | 2009-01-20 | Bandura Dmitry R | Method and apparatus for flow cytometry linked with elemental analysis |
| US7316903B2 (en) * | 2003-03-28 | 2008-01-08 | United States Of America As Represented By The Department Of Health And Human Services | Detection of nucleic acid sequence variations using phase Mu transposase |
| US8283624B2 (en) | 2006-08-15 | 2012-10-09 | Dvs Sciences Inc. | Apparatus and method for elemental analysis of particles by mass spectrometry |
| US9080211B2 (en) * | 2008-10-24 | 2015-07-14 | Epicentre Technologies Corporation | Transposon end compositions and methods for modifying nucleic acids |
| EP2635679B1 (en) * | 2010-11-05 | 2017-04-19 | Illumina, Inc. | Linking sequence reads using paired code tags |
| JP6017458B2 (en) | 2011-02-02 | 2016-11-02 | ユニヴァーシティ・オブ・ワシントン・スルー・イッツ・センター・フォー・コマーシャリゼーション | Mass parallel continuity mapping |
| SG11201508985VA (en) * | 2013-05-23 | 2015-12-30 | Univ Leland Stanford Junior | Transposition into native chromatin for personal epigenomics |
| CN105658310A (en) | 2013-09-13 | 2016-06-08 | 斯坦福大学托管董事会 | Multiplexed imaging of tissues using mass tags and secondary ion mass spectrometry |
| US9790476B2 (en) * | 2014-04-15 | 2017-10-17 | Illumina, Inc. | Modified transposases for improved insertion sequence bias and increased DNA input tolerance |
| WO2015179706A1 (en) * | 2014-05-23 | 2015-11-26 | Fluidigm Corporation | Haploidome determination by digitized transposons |
| US10078778B2 (en) * | 2015-01-15 | 2018-09-18 | Massachusetts Institute Of Technology | Systems, methods, and apparatus for in vitro single-cell identification and recovery |
| WO2017034970A1 (en) * | 2015-08-21 | 2017-03-02 | The General Hospital Corporation | Combinatorial single molecule analysis of chromatin |
| WO2017075294A1 (en) * | 2015-10-28 | 2017-05-04 | The Board Institute Inc. | Assays for massively combinatorial perturbation profiling and cellular circuit reconstruction |
-
2017
- 2017-03-09 WO PCT/US2017/021677 patent/WO2017156336A1/en active Application Filing
- 2017-03-09 CN CN201780021788.6A patent/CN109072206A/en active Pending
- 2017-03-09 EP EP17764148.7A patent/EP3426774A4/en not_active Withdrawn
- 2017-03-09 EP EP21153694.1A patent/EP3868879A1/en active Pending
- 2017-03-09 SG SG11201807444PA patent/SG11201807444PA/en unknown
- 2017-03-09 US US16/081,381 patent/US11680253B2/en active Active
-
2023
- 2023-06-19 US US18/337,160 patent/US20240076637A1/en active Pending
Non-Patent Citations (4)
| Title |
|---|
| "Current Protocols in Molecular Biology", 5 January 2015, WILEY, New York, NY [u.a.], ISBN: 978-0-471-14272-0, article JASON D. BUENROSTRO ET AL: "ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide : ATAC-seq for Assaying Chromatin Accessibility", pages: 21.29.1 - 21.29.9, XP055504007, DOI: 10.1002/0471142727.mb2129s109 * |
| BRANDON CHIN SOS ET AL: "Characterization of chromatin accessibility with a transposome hypersensitive sites sequencing (THS-seq) assay", GENOME BIOLOGY, vol. 17, no. 20, 4 February 2016 (2016-02-04), pages 1 - 15, XP055463306, DOI: 10.1186/s13059-016-0882-7 * |
| See also references of WO2017156336A1 * |
| XINGQI CHEN ET AL: "ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing", NATURE METHODS, vol. 13, no. 12, 1 December 2016 (2016-12-01), New York, pages 1013 - 1020, XP055511584, ISSN: 1548-7091, DOI: 10.1038/nmeth.4031 * |
Also Published As
| Publication number | Publication date |
|---|---|
| WO2017156336A1 (en) | 2017-09-14 |
| SG11201807444PA (en) | 2018-09-27 |
| EP3426774A1 (en) | 2019-01-16 |
| US20240076637A1 (en) | 2024-03-07 |
| US20190071656A1 (en) | 2019-03-07 |
| US11680253B2 (en) | 2023-06-20 |
| CN109072206A (en) | 2018-12-21 |
| EP3868879A1 (en) | 2021-08-25 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| EP3426774A4 (en) | Transposase-mediated imaging of the accessible genome | |
| EP3534384A4 (en) | Reactor | |
| EP3430731A4 (en) | Iugw architecture | |
| EP3465491B8 (en) | Control-to-range aggressiveness | |
| EP3494682A4 (en) | Security-on-demand architecture | |
| EP3539150A4 (en) | Active showerhead | |
| EP3436016A4 (en) | Novel co-crystals | |
| EP3509581A4 (en) | Formulations of (r | |
| EP3160405A4 (en) | Treatment of the ear | |
| EP3119401A4 (en) | Cenicriviroc for the treatment of fibrosis | |
| EP3204845A4 (en) | Imaging supplies | |
| EP3476272A4 (en) | Image | |
| EP3250716A4 (en) | Microscope-free imaging | |
| EP3166931A4 (en) | An improved process for the preparation of enzalutamide | |
| EP3395438A4 (en) | Reactor | |
| EP3280408A4 (en) | Process for the preparation of dicycloplatin | |
| EP3354034B8 (en) | Secure distribution of an image | |
| EP3488420A4 (en) | Radiometric imaging | |
| EP3348912A4 (en) | Range hood | |
| EP3338446A4 (en) | Image projections | |
| EP3468578A4 (en) | Uses of il-41 | |
| EP3256124A4 (en) | Cenicriviroc for the treatment of fibrosis | |
| EP3512404A4 (en) | An otoscope | |
| EP3519382A4 (en) | An improved process for the preparation of lacosamide | |
| EP3552696A4 (en) | Reactor |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: THE INTERNATIONAL PUBLICATION HAS BEEN MADE |
|
| PUAI | Public reference made under article 153(3) epc to a published international application that has entered the european phase |
Free format text: ORIGINAL CODE: 0009012 |
|
| STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: REQUEST FOR EXAMINATION WAS MADE |
|
| 17P | Request for examination filed |
Effective date: 20180903 |
|
| AK | Designated contracting states |
Kind code of ref document: A1 Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR |
|
| AX | Request for extension of the european patent |
Extension state: BA ME |
|
| DAV | Request for validation of the european patent (deleted) | ||
| DAX | Request for extension of the european patent (deleted) | ||
| A4 | Supplementary search report drawn up and despatched |
Effective date: 20190717 |
|
| RIC1 | Information provided on ipc code assigned before grant |
Ipc: C07K 1/13 20060101ALI20190711BHEP Ipc: C12N 15/90 20060101ALI20190711BHEP Ipc: C12N 15/87 20060101ALI20190711BHEP Ipc: C12N 15/11 20060101ALI20190711BHEP Ipc: C12Q 1/6806 20180101ALI20190711BHEP Ipc: C12N 9/22 20060101AFI20190711BHEP |
|
| RAP1 | Party data changed (applicant data changed or rights of an application transferred) |
Owner name: THE BOARD OF TRUSTEES OF THE LELAND STANFORD JUNIO |
|
| STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: EXAMINATION IS IN PROGRESS |
|
| 17Q | First examination report despatched |
Effective date: 20200731 |
|
| STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: EXAMINATION IS IN PROGRESS |
|
| STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN |
|
| 18D | Application deemed to be withdrawn |
Effective date: 20210211 |