EP2811822A1 - TOMATO PLANT COMPRISING A MUTANT tghVI ALLELE - Google Patents

TOMATO PLANT COMPRISING A MUTANT tghVI ALLELE

Info

Publication number
EP2811822A1
EP2811822A1 EP13702652.2A EP13702652A EP2811822A1 EP 2811822 A1 EP2811822 A1 EP 2811822A1 EP 13702652 A EP13702652 A EP 13702652A EP 2811822 A1 EP2811822 A1 EP 2811822A1
Authority
EP
European Patent Office
Prior art keywords
plant
tomato
plants
allele
mutant
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP13702652.2A
Other languages
German (de)
French (fr)
Inventor
Rudolf Verhoef
Dörthe Bettina DRÄGER
Arie Vogelaar
Zeger Otto Van Herwijnen
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Rijk Zwaan Zaadteelt en Zaadhandel BV
Original Assignee
Rijk Zwaan Zaadteelt en Zaadhandel BV
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Rijk Zwaan Zaadteelt en Zaadhandel BV filed Critical Rijk Zwaan Zaadteelt en Zaadhandel BV
Priority to EP13702652.2A priority Critical patent/EP2811822A1/en
Publication of EP2811822A1 publication Critical patent/EP2811822A1/en
Withdrawn legal-status Critical Current

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Classifications

    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01HNEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
    • A01H6/00Angiosperms, i.e. flowering plants, characterised by their botanic taxonomy
    • A01H6/82Solanaceae, e.g. pepper, tobacco, potato, tomato or eggplant
    • A01H6/825Solanum lycopersicum [tomato]
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01HNEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
    • A01H1/00Processes for modifying genotypes ; Plants characterised by associated natural traits
    • A01H1/02Methods or apparatus for hybridisation; Artificial pollination ; Fertility
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01HNEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
    • A01H5/00Angiosperms, i.e. flowering plants, characterised by their plant parts; Angiosperms characterised otherwise than by their botanic taxonomy
    • A01H5/08Fruits
    • AHUMAN NECESSITIES
    • A23FOODS OR FOODSTUFFS; TREATMENT THEREOF, NOT COVERED BY OTHER CLASSES
    • A23LFOODS, FOODSTUFFS, OR NON-ALCOHOLIC BEVERAGES, NOT COVERED BY SUBCLASSES A21D OR A23B-A23J; THEIR PREPARATION OR TREATMENT, e.g. COOKING, MODIFICATION OF NUTRITIVE QUALITIES, PHYSICAL TREATMENT; PRESERVATION OF FOODS OR FOODSTUFFS, IN GENERAL
    • A23L19/00Products from fruits or vegetables; Preparation or treatment thereof
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6895Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae

Definitions

  • the present invention relates to a tomato plant
  • invention further relates to a marker and the use of the marker for identifying tomato plants with this phenotype.
  • the invention also relates to the seeds and progeny of such plants and to propagation material for obtaining such plants. Furthermore the invention relates to the use of the plants, seeds and propagation material that show the
  • Tomato is a vegetable crop grown worldwide in all conditions and climates, both in protected cultivation or in open field. Growing tomato plants requires a lot of labour and attention, during which the plants are handled
  • Handling the plants includes activities such as grafting, planting, pruning, winding, and of course harvesting.
  • Another aspect of a tomato plant is the typical tomato smell that it emits. This can become rather
  • Non-glandular trichomes are usually regarded as , hairs' and do not produce, store, or secrete specific biochemical compounds.
  • a glandular trichome typically consists of a stalk, made up of one or more cells, and one or more glandular cells at the tip of the stalk that form the glandular head.
  • glandular trichomes are identified in tomato and related Solanum species, namely types I, IV, VI, and VII. These types differ in size and length of the stalks, and in number of secretory cells that form the glandular head (McDowell et al . , Plant Physiology Vol. 155, 524-539 (2011)) .
  • glandular head are classified as secreting glands, while multicellular glands are classified as storage glands.
  • Type VI trichomes are composed of four disc cells, or glandular cells, at the end of a one- or two-celled stalk.
  • the four disc cells form the multicellular glandular head (Fig. 1) .
  • Biochemical compounds that are produced by the various glandular trichomes in tomato comprise terpenoids, flavonoids, fatty acids, alkaloids, and acyl sugars such as acyl glucoses and acyl sucroses.
  • chlorophyll however is not among the compounds known to be produced or secreted by glandular hairs in tomato.
  • the produced compounds are known to play important roles in attracting and repelling various insects and in determining susceptibility to certain diseases.
  • many aspects of the roles of these metabolites are still unclear, and extensive research is ongoing to determine more precisely the functionality of glandular trichomes and the substances they excrete.
  • the new tomato plant was analysed for phenotypical characteristics.
  • the glandular trichomes in cultivated tomato (Solanum lycopersicum) that are most abundant are type I and type VI.
  • the typical glandular heads of type VI trichomes, which are made up of four glandular cells, were not present among the trichomes (Fig. 2B) , only the stalks could still be
  • the areas were 100 - 10,000 x reduced in plants of the invention as compared to other plants, including wild type and isogenic plants ( Figures 3, 8, and 11) .
  • the sesquiterpenes showed a similar range of 100 - 10,000 x area reduction in plants of the invention ( Figures 4, 9, and 12).
  • the compound cis-3-hexanal shows a significant 3-fold reduction for plants of the invention when the year is taken into account, which was calculated using an unbalanced ANOVA approach, and hexanal is about 40-fold reduced ( Figures 5, 10, 13, and 14). Plants belonging to the invention therefore showed a significant reduction in terpenes, sesquiterpenes and aldehydes, in addition to absence of type VI glands, absence of green staining, and absence or strong reduction of typical tomato smell.
  • Chlorophyll typically shows two absorbance peaks, one at around between 420 and 460 nm and one between around 620 and 700 nm, both of which were clearly absent in all extracts. Therefore it had to be concluded that the absence of green staining of tomato plants of the invention is not due to a change in
  • Carotenoids which account for or contribute to many coloured plant tissues, were not found among the substances that were analysed. Carotenoids have an
  • plants of the invention do not contain flavonoids that are present in the green vegetative parts of prior art tomato plants.
  • the plant does not comprise or has at least a strongly reduced number of the glandular cells of type VI trichomes ,
  • the plant has a strongly reduced level of volatiles, in particular terpenes, sesquiterpenes and aldehydes ,
  • the plant does not express or is at least strongly reduced in the typical tomato smell
  • the plant does not comprise or has at least a strongly reduced level of flavonoids.
  • the mutant allele was named tghVI (tomato
  • chromosome 9 of the tomato genome between the physical positions 1750800 bp and 4517648 bp, preferably between positions 1939546 bp and 2970346 bp, most preferably at about position 2454946 bp on the physical SL2.30 map of the Solanum lycopersicum genome.
  • the mutant tghVI allele can be identified by the presence of a molecular SNP marker that is linked to the tghVI allele.
  • a SNP marker linked to the tghVI allele is located at 1750800 bp on chromosome 9 of the physical Solanum lycopersicum map SL2.30 and is a nucleotide change from A to G.
  • the presence of the mutant tghVI allele in a plant of the invention is preferably also associated with a molecular SNP marker located on chromosome 9 at 1750800 bp on the public SL2.30 map of the Solanum lycopersicum genome, wherein the SNP is a nucleotide change from A to G.
  • the absence of the SNP marker does not mean that the mutant allele is not present.
  • a plant without the SNP marker but with the phenotype of the invention caused by the mutant allele can thus still be a plant of the invention.
  • the present invention thus provides a tomato plant (Solanum lycopersicum) comprising a mutant allele which allele is linked to the following phenotypic features:
  • the plant does not comprise or has at least a strongly reduced number of the glandular cells of type VI trichomes , - the plant does not cause green staining upon contact,
  • the plant has a strongly reduced level of volatiles, in particular terpenes, sesquiterpenes and aldehydes ,
  • the plant does not express or is at least strongly reduced in the typical tomato smell
  • the plant does not comprise or has at least a strongly reduced level of flavonoids.
  • Plants of the invention have modified type VI trichomes which modification leads to absent or nonfunctional type VI glandular cells or type VI glandular cells that do not function properly.
  • the four glandular cells i.e. the complete glandular head, are preferably completely absent.
  • the trait of having modified type VI trichomes that lack all of the four glandular cells that make up the glandular head can for example be obtained from plants, representative seeds of which were deposited with the NCIMB under number NCIMB 41845, but the trait of lacking four glandular cells or having non-functional or mal ⁇ functioning glandular cells could also be obtained from other, yet unknown sources.
  • glandular cells of type VI trichomes and at the same time would generate a complete absence of staining and a strong reduction or lack of a typical tomato smell, and the
  • tomato plants of the invention leads to major advantages during tomato growing.
  • the necessity to treat the skin with a substance in advance of handling tomato plants to prevent staining is removed.
  • the use of protective clothing or gloves when working in a tomato crop is largely reduced.
  • no rigorous methods to remove the staining after handling tomato plants are
  • tomato plants of the invention will substantially facilitate tomato growing.
  • the mutant tghVI allele is obtainable from a tomato plant comprising said mutant tghVI allele, representative seed of which was deposited with the NCIMB under deposit number NCIMB 41845.
  • the tomato plant of the invention carrying the mutant tghVI allele is obtainable by crossing a first tomato plant with a second tomato plant, wherein one of the said plants is grown from seeds of which a
  • one of the said plants used for crossing to obtain a tomato plant of the invention is carrying the tghVI allele.
  • Selection for plants comprising the tghVI allele can be done on phenotype, i.e. determining the presence of one or more of the phenotypic aspects of the trait, which are the absence of green staining, the absence or near absence of flavonoids, the reduction of volatiles, and the absence of a typical tomato smell.
  • selection can be done on the presence of modified type VI trichomes that lack glandular heads.
  • Selection can alternatively be done genetically on the presence of the relevant mutant tghVI allele, for example by using one or more molecular markers.
  • molecular markers results in a reliable outcome, and can be done in a very early plant stage.
  • the presence of the mutant tghVI allele also leads to the absence of the four glandular cells that form the glandular heads of type VI trichomes.
  • the leaves of tomato plants of the invention are thus absent in fully developed type VI trichomes, and only possess type VI trichomes that lack glandular heads.
  • Other glandular as well as non- glandular trichomes besides type VI can however be detected on a tomato plant of the invention.
  • the absence of glands of type VI trichomes is linked with the absence of green staining from the green vegetative parts of the plant upon contact.
  • the green vegetative parts comprise the leaves and the stems of a plant.
  • the presence of the tghVI allele preferably further leads to the absence of a typical tomato smell in a tomato plant of the
  • the absence of green staining and the absence of a typical tomato smell are the result of a modification in the composition of at least flavonoids and volatiles, due to the absence of glands of type VI trichomes.
  • the mutant tghVI allele of the invention is present in homozygous form.
  • the trait of the invention is monogenic, i.e. caused by a single gene, and is inherited in a recessive way.
  • plants that carry the genetic trait, i.e. the mutant tghVI allele can suitably be identified among descendants from a cross between a plant not carrying the trait, and a plant that does carry the said trait, by growing F2 plants from seeds that are the result of the initial cross and a selfing step, and selecting plants showing the desired trait.
  • Selecting the plants can be done phenotypically by determining the absence of green staining, and/or the absence of a typical tomato smell, and/or the absence of flavonoids and/or the absence or reduction of volatiles and/or the absence of the glandular cells of type VI trichomes or can be done through identification of the mutant allele, for example by means of the marker defined herein .
  • Determining absence of green staining is done in comparison to a control.
  • the control to determine the absence of green staining is any existing tomato plant, or an isogenic tomato plant, i.e. a plant that is
  • selecting the plants in the F2 can be done phenotypically by determining the absence of the four glandular cells that form the glandular heads of type VI trichomes.
  • the absence of glandular heads of type VI trichomes as mentioned throughout this application is determined on the green vegetative parts of the plant.
  • the absence of glands of type VI trichomes should not be
  • the invention furthermore relates to a cell of a tomato plant as claimed.
  • a cell of a tomato plant as claimed.
  • Such cell may be either in isolated form or may be part of the complete tomato plant or parts thereof and then still constitutes a cell of the invention because such a cell harbours in its genetic constitution the genetic information that leads to the characteristics that define the tomato plant of the invention.
  • Each cell of tomato plants of the invention carries the genetic
  • Each cell thus carries the mutant tghVI allele in its genome .
  • the invention also relates to tissue of a plant as claimed.
  • the tissue can be undifferentiated tissue or already differentiated tissue.
  • Undifferentiated tissues are for example stem tips, anthers, petals, pollen and can be used in micropropagation to obtain new plantlets that are grown into new plants of the invention that have the above identified characteristics.
  • the invention according to a further aspect thereof relates to seeds of a plant as claimed.
  • the seeds do not show the genetic trait of the tomato plant of the invention, they harbour the genetic information that when a plant is grown from the seeds makes this plant a plant of the invention that has the above identified characteristics.
  • the invention also relates to progeny of the plants, cells, tissues and seeds of the invention.
  • progeny can in itself be plants, cells, tissues or seeds.
  • progeny is intended to mean the first and all further descendants from a cross with a plant of the invention that comprises the mutant tghVI allele that leads to the absence of the glandular heads of type VI trichomes.
  • Progeny of the invention are descendants of any cross with a plant of the invention that carries the trait that leads to the absence of the glandular heads of type VI trichomes or to the other characteristics identified above .
  • Progeny also encompasses plants that carry the trait of the invention and are obtained from other plants or progeny of plants of the invention by vegetative propagation or multiplication.
  • the invention thus further relates to seed of the claimed plant and to parts of the plant that are suitable for sexual reproduction.
  • Such parts are for example selected from the group consisting of microspores, pollen, ovaries, ovules, embryo sacs and egg cells.
  • the parts are for example selected from the group consisting of microspores, pollen, ovaries, ovules, embryo sacs and egg cells.
  • invention relates to parts of the plant that are suitable for vegetative reproduction, in particular cuttings, roots, stems, cells, and protoplasts.
  • tissue culture of the claimed plant comprises regenerable cells.
  • tissue culture can be derived from leaves, pollen, embryos, cotyledons, hypocotyls, meristematic cells, roots, root tips, anthers, flowers, seeds and stems.
  • the invention furthermore relates to hybrid seed and to a method of producing hybrid seed comprising crossing a first parent plant with a second parent plant and harvesting the resultant hybrid seed, wherein said first parent plant and/or said second parent plant is the plant as claimed.
  • the tghVI allele is present in homozygous form and the plant expresses the phenotype described above.
  • the invention also relates to inbreds and doubled haploids of tomato plants of the invention.
  • the invention relates to tomato plants of the invention that carry the mutant tghVI allele, and having acquired said allele by introduction from a suitable source, either by conventional breeding, or genetic modification, in particular by cisgenesis or transgenesis .
  • Cisgenesis is genetic modification of plants with a natural gene, coding for an (agricultural) trait, from the crop plant itself or from a sexually compatible donor plant.
  • Transgenesis is genetic modification of a plant with a gene from a non-crossable species or a synthetic gene.
  • the invention also relates to the germplasm of plants of the invention.
  • the germplasm is constituted by all inherited characteristics of an organism and according to the invention encompasses at least the tghVI allele of the invention.
  • the germplasm can be used in a breeding programme for the development of tomato plants that are lacking in or have a reduction in green staining from the green vegetative parts of the plant upon contact, and/or are lacking a typical tomato plant aroma, and/or are absent in flavonoids from the green vegetative parts of the plant, and/or are reduced in volatile compounds, and/or are lacking glands of tomato type VI trichomes.
  • the invention also relates to a tomato fruit that is produced by a plant of the invention.
  • the invention further relates to a food product, comprising the fruit of a tomato plant as claimed, or parts thereof.
  • the invention also relates to a food product in processed form.
  • the invention relates to a method for production of a tomato plant comprising the tghVI allele, comprising
  • the parent that provides the trait of the invention is not necessarily a plant grown directly from the deposited seeds.
  • the parent can also be a progeny plant from the seed or a progeny plant from seeds that are identified to have the trait of the invention by other means .
  • the invention relates to a method for production of a tomato plant comprising the tghVI allele, comprising
  • the invention additionally provides a method of introducing an additional desired trait into a tomato plant comprising the tghVI allele, comprising:
  • the invention includes a tomato plant produced by this method.
  • the selection step is suitably done by means of marker analysis with the SNP marker
  • selection for plants comprising the tghVI allele is done in the Fl .
  • selection for the trait of the invention is started in the F2 of a cross or alternatively of a backcross.
  • Selection in the Fl is suitably done by means of the marker.
  • Selection in the F2 can also be done on the basis of the phenotype.
  • selection for plants comprising the tghVI allele is started in the F3 or a later generation.
  • the plant comprising the mutant tghVI allele is a plant of an inbred line, a hybrid, a doubled haploid, or of a segregating population.
  • the invention further provides a method for the production of a tomato plant comprising the tghVI allele using a doubled haploid generation technique to generate a doubled haploid line comprising the said mutant tghVI allele that leads to the absence of the glandular heads of type VI trichomes, a modification in the composition of flavonoids and volatiles, absence of green staining, and/or absence of a typical tomato plant smell.
  • the invention furthermore relates to hybrid seed and to a method for producing hybrid seed comprising
  • the invention relates to a method for producing a hybrid tomato plant comprising crossing a first parent tomato plant with a second parent tomato plant and harvesting the resultant hybrid tomato seed, in which the first parent tomato plant and/or the second parent tomato plant comprises the mutant tghVI allele.
  • the invention also relates to a method for the production of a tomato plant comprising modification in the composition of flavonoids and volatiles, absence of the glandular heads of type VI trichomes, absence of green staining, and/or absence of a typical tomato plant smell, by using a seed that comprises the mutant tghVI allele in its genome for growing the said tomato plant.
  • the seeds are suitably seeds of which a representative sample was
  • the invention also relates to a method for seed production comprising growing tomato plants from seeds of which a representative sample was deposited with the NCIMB under deposit number NCIMB 41845, allowing the plants to produce seeds, and harvesting those seeds. Production of the seeds is suitably done by crossing or selfing.
  • the invention relates to a method for the production of a tomato plant comprising the mutant tghVI allele by using tissue culture.
  • the invention furthermore relates to a method for the production of a tomato plant comprising the mutant tghVI allele by using vegetative reproduction.
  • the invention relates to a method for the production of a tomato plant comprising the mutant tghVI allele by using a method for genetic modification to introgress the mutant tghVI allele into the tomato plant.
  • Genetic modification comprises transgenic modification or transgenesis , using a gene from a non-crossable species or a synthetic gene, and cisgenic modification or cisgenesis, using a natural gene, coding for an (agricultural) trait, from the crop plant itself or from a sexually compatible donor plant.
  • the invention also relates to a breeding method for the development of tomato plants that comprise modification in the composition of flavonoids and volatiles, absence of the glandular heads of type VI trichomes, absence of green staining, and/or absence or strong reduction of a typical tomato smell, wherein germplasm comprising the mutant tghVI allele is used.
  • Representative seed of said plant comprising the mutant tghVI allele and being representative for the germplasm was deposited with the NCIMB under deposit number NCIMB 41845.
  • the invention relates to a method for the production of a tomato plant comprising the mutant tghVI allele wherein progeny or propagation material of a plant comprising the mutant tghVI allele is used as a source to introgress the mutant tghVI allele into another tomato plant.
  • Representative seed of said plant comprising the mutant tghVI allele was deposited with the NCIMB under deposit number NCIMB 41845.
  • the invention provides preferably a tomato plant showing modification in the composition of flavonoids and volatiles, absence of the glandular heads of type VI trichomes, absence of green staining, and/or absence or strong reduction of a typical tomato plant smell, which plant is obtainable by any of the methods herein described.
  • a mutant allele can be identified by the use of a molecular marker.
  • a mutant allele can alternatively be identified by the position on a genetic map, or by
  • the , genetic trait' is the trait or characteristic that is conferred by the mutant tghVI allele.
  • the genetic trait can be identified phenotypically, for example by performing visual observations or biochemical analyses.
  • Genetic maps can vary according to the method by which they are assembled. A person skilled in the art knows how to compare and combine genetic maps, whereby differences between genetic maps can be eliminated or minimized.
  • positions as used herein are physical positions based on the public physical map of the tomato genome SL2.30 (version of August 2010, http://solgenomics.net/organism/
  • solanum_lycopersicum/genome solanum_lycopersicum/genome
  • accession number NCIMB 41845 accession number NCIMB 41845.
  • Figure 1 Type VI trichome Solanum lycopersicum
  • Figure 2 A: Wildtype TR306-1 type VI trichomes with glandular head. B: mutant 3432-1 type VI trichomes with glandular heads absent.
  • Figure 6 Absorbance of tomato staining particles. The order of the accessions in the legenda is the order of the graph lines from top to bottom.
  • Figure 7 Acyl sugar measurements. The results are given for glucose in nmol/cm 2 leaf disc.
  • Figure 12 Combined data of Fig. 4 and Fig. 9
  • Figure 13 Combined data of Fig. 5 and Fig. 10
  • the treated seeds were germinated and the resulting plants were grown in a greenhouse to produce M2 seeds.
  • M2 seeds were harvested and bulked in one pool.
  • the resulting pool of M2 seeds was used as starting material to identify individual M2 plants that were absent in green staining upon contact with the green
  • the efficacy of the genetic modification procedure was assessed by determining the occurrence of bleached plants, which is indicative for chlorophyll loss due to modifications in genes directly or indirectly involved in the formation or accumulation of chlorophyll.
  • M2 tomato seeds were germinated in soil and grown to small plantlets. Subsequently, approximately 7000 randomly chosen plants were transferred for a seedling screen.
  • the green plant parts of the mutant plants were visually observed by use of a binocular, and compared with normal wild type (WT) tomato plants.
  • WT normal wild type
  • the microscopic observation showed that the glandular heads of type VI trichomes, which are made up of four glandular cells, were not present among the glands of the mutant tomato plants. It was therefore concluded that there was linkage between the absence of type VI glands and the absence of green staining.
  • the F2 segregated in a manner that corresponds with a monogenic recessive inheritance of the trait of the invention. Both the absence of green staining and the absence of four glandular cells of type VI trichomes
  • the trait of the invention could be brought into a wild type tomato plant by crossing the wild type plant with a plant of the invention and selecting for the desired phenotype in the F2 of that cross, either by selection on absence of green staining, or by selection on absence of four glandular cells of type VI trichomes.
  • the SNP marker that correlated most closely to the mutant allele is located on chromosome 9 at 1750800 bp on the public SL2.30 map of the Solanum lycopersicum genome, wherein the SNP is a nucleotide change from A to G.
  • This molecular marker can be used to identify the presence of the mutant allele in plants grown from seeds as deposited under NCIMB number 41845.
  • the new mutant allele was provisionally named tghVI (tomato glandular hairless VI).
  • Other plants that comprise the same mutant tghVI allele of the invention might also be linked to the A/G SNP on position 1750800 bp of the public SL2.30 map, but can optionally also be linked to another molecular SNP marker or any other molecular marker that is polymorphic in a certain population.
  • Plants of the invention were analysed for a large number of volatiles, and compared with a tomato plant that did not contain the mutant tghVI allele of the invention.
  • a tomato plant to be measured was placed in a plastic bag for 10 minutes. Next, the plants were touched to allow the release of the relevant compounds to be analysed.
  • a number of tomato plants were analysed for the green staining. Included were plants of the invention, isogenic plants lacking the mutant allele of the invention, wild type (normal) tomato plants, and plants from the art that contain the hi (hairless) mutant allele (Fig. 6) .
  • Plants were analysed at about 7-8 weeks after sowing.
  • a metal spatula was used to wipe along the stem of each plant in the experiment, thus covering a surface area of approximately 75cm 2 .
  • the resulting substance present on the spatula was dissolved in 1.0 ml ethanol. After drying the spatula, this procedure was repeated several times for each plant on different positions covering the whole stem surface .
  • the extracts from the individual plants were centrifuged for 5 minutes at 13000 rpm to remove debris, after which each extract was diluted with an equal volume of ethanol.
  • a UV-VIS spectrophotometer was used to measure the absorbance of the solutions.
  • the first absorbance peak is around between 210-290 nm, which is not in the visible part of the spectrum.
  • the second absorbance peak can range
  • Flavonoids are a class of polyphenols, the presence of which can be
  • the phenolics are measured against a
  • Acylated sugars are sugar compounds such as glucose or sucrose that are covalently bound to a fatty acid via an ester bond.
  • Example 6 Twelve leaf discs were taken with a cork borer of
  • Discs were taken from the 2 nd , 3 rd and 4 th leaf counted from the shoot apex of a plant, avoiding main veins, from plants of about 10-12 weeks old. Discs were placed in vials with 2 ml dichloromethane and rotated softly for 30 sec to dissolve surface compounds.
  • 0.1 ml of leaf surface extract was evaporated under nitrogen gas and redissolved in 0.5 ml 0.1M NaOH solution in methanol. Samples were heated to 60°C in a water bath for 15 min to allow saponification, i.e. breaking of the ester bond with NaOH and heat. Samples were then cooled and filtered.
  • Tomato plant (Solanum lycopersicum L.) comprising a mutant allele that leads to modification in the composition of flavonoids and volatiles as a result of the absence of the glandular heads of type VI trichomes, as compared to a plant not carrying the said genetic trait, which mutant allele is as comprised in a tomato plant representative seed of which was deposited with the NCIMB under deposit number NCIMB 41845.
  • Tomato plant as described in clause 1 or 2 obtainable by crossing a first tomato plant with a second tomato plant, wherein one of the said plants is grown from seeds as deposited with the NCIMB under deposit accession number NCIMB 41845, or a progeny plant thereof, and
  • Tomato plant as described in clause 1 or 2 obtainable by crossing a first tomato plant with a second tomato plant, wherein one of the said plants is carrying the said genetic trait that results in modification in the composition of flavonoids and volatiles as a result of the absence of the glandular heads of type VI trichomes, and selecting, preferably in the F2 generation, for plants that are modified in the composition of flavonoids and volatiles as a result of the absence of the glandular heads of type VI trichomes, as compared to a plant not carrying the said genetic trait.
  • Tomato plant as described in any of the clauses 1 to 4, wherein the mutant allele leads to the absence of green staining from the green vegetative parts of the plant upon contact and/or the absence or reduction of a typical tomato aroma.
  • a plant produced from the propagation material comprises the mutant allele as defined in clause 1 or 2.
  • Tomato plant as described in any of the clauses 1-5 and 7, seed as described in clause 6, or propagation material as described in clause 8, wherein the said mutant allele in the genome of seeds of which a representative sample was deposited as NCIMB 41845 is linked to a molecular SNP marker on position 1750800 of the public physical map SL2.30, wherein the SNP is a nucleotide change from A to G.
  • Food product comprising the tomato fruit as described in clause 10, or parts thereof, optionally in processed form.

Abstract

The present invention relates to a tomato plant (Solanum lycopersicum L.) in which the glandular heads of type VI trichomes are absent, and that has a modified composition of flavonoids and volatiles. Furthermore, the typical tomato smell is absent or nearly absent. The plant comprises a mutant allele, which is obtainable from a tomato plant, representative seed of which was deposited under deposit accession number NCIMB 41845. The said mutant allele is located on chromosome 9 between positions 1750800 bp and 4517648 bp, preferably between positions 1939546 bp and 2970346 bp, most preferably at about position 2454946 bp on a physical map of the Solanum lycopersicum genome.

Description

TOMATO PLANT COMPRISING A MUTANT tghVI ALLELE
The present invention relates to a tomato plant
(Solanum lycopersicum L.) that shows no or a reduced level of green staining and/or no or a reduced smell. The
invention further relates to a marker and the use of the marker for identifying tomato plants with this phenotype. The invention also relates to the seeds and progeny of such plants and to propagation material for obtaining such plants. Furthermore the invention relates to the use of the plants, seeds and propagation material that show the
phenotype as germplasm in a breeding programme.
Tomato is a vegetable crop grown worldwide in all conditions and climates, both in protected cultivation or in open field. Growing tomato plants requires a lot of labour and attention, during which the plants are handled
repeatedly by various persons. Handling the plants includes activities such as grafting, planting, pruning, winding, and of course harvesting.
Persons working in a tomato crop rapidly notice that with every contact of a green part of the tomato plant, a green substance comes off on the skin or any surface the contact is made with. The substance can also be yellowish in colour. Especially hands and clothes become covered with this substance, which after very intensive handling can result in almost black greenish stains on for example the hands. The main difficulty of this substance is that it is very hard to remove from the skin or clothes by normal washing. The green or yellowish substance results in green staining.
Another aspect of a tomato plant is the typical tomato smell that it emits. This can become rather
unpleasant when one is frequently exposed to a tomato crop. The surface of the various plant parts of tomato (Solanum lycopersicum) is covered with trichomes, both non- glandular and glandular. Non-glandular trichomes are usually regarded as ,hairs' and do not produce, store, or secrete specific biochemical compounds.
A variety of biochemical compounds in tomato however are produced in glandular trichomes. A glandular trichome typically consists of a stalk, made up of one or more cells, and one or more glandular cells at the tip of the stalk that form the glandular head. Four different types of glandular trichomes are identified in tomato and related Solanum species, namely types I, IV, VI, and VII. These types differ in size and length of the stalks, and in number of secretory cells that form the glandular head (McDowell et al . , Plant Physiology Vol. 155, 524-539 (2011)) . The unicellular glands, comprising one glandular cell that forms the
glandular head, are classified as secreting glands, while multicellular glands are classified as storage glands.
Type VI trichomes are composed of four disc cells, or glandular cells, at the end of a one- or two-celled stalk. The four disc cells form the multicellular glandular head (Fig. 1) .
Biochemical compounds that are produced by the various glandular trichomes in tomato comprise terpenoids, flavonoids, fatty acids, alkaloids, and acyl sugars such as acyl glucoses and acyl sucroses. A substance such as
chlorophyll however is not among the compounds known to be produced or secreted by glandular hairs in tomato. The produced compounds are known to play important roles in attracting and repelling various insects and in determining susceptibility to certain diseases. However, many aspects of the roles of these metabolites are still unclear, and extensive research is ongoing to determine more precisely the functionality of glandular trichomes and the substances they excrete.
In addition, data on the distribution of which substances are produced by what type of glandular hairs is rather limited and requires specialized approaches to obtain. For many substances it is assumed that they are or can be produced by several glandular hair types, although it is indicated that there are differences in the quality and quantities that are produced by a certain type of glandular hairs. It is for instance known that acyl sugars, which play a significant role in insect resistance, are mainly produced in tomato type I and IV trichomes.
It is an object of the present invention to provide a tomato plant (Solanum lycopersicum L.) that shows no or a reduced level of green staining and/or no or a reduced typical tomato smell.
It is a further object of the present invention to provide a marker that can identify a plant that has the phenotype of the invention.
During the research that led to the present invention new mutant tomato plants were created through application of an EMS treatment protocol (EXAMPLE 1 ) . The plant that resulted in the invention was identified from the resulting population as it did not leave a green residue or green staining upon touching the green vegetative parts such as leaves or stem. Plant growth and plant type of the new tomato plant were comparable to normal tomato plants. The mutant plant was not considered to be weak in growth or in plant habit. No defects regarding the reproduction of the plant, such as sterility, fruit development, or seed
development were observed.
The new tomato plant was analysed for phenotypical characteristics. The glandular trichomes in cultivated tomato (Solanum lycopersicum) that are most abundant are type I and type VI. Surprisingly, the observation of the surface of green plant parts of this particular plant showed that wild type trichomes of type VI could not be detected. The typical glandular heads of type VI trichomes, which are made up of four glandular cells, were not present among the trichomes (Fig. 2B) , only the stalks could still be
recognized.
It was thus found that in the newly created tomato plant that does not show green staining the glandular cells of type VI trichomes were absent.
It was also found that this specific plant also lacked the typical tomato-plant smell.
Further analysis of the new tomato plants was done to determine the presence of various biochemical compounds. Measurements were done on three groups of volatiles:
terpenes, sesquiterpenes, and aldehydes. The analysis showed that the plants of the invention had a significant reduction of nearly all volatiles that were analysed within these groups. Some volatiles could not be detected and are considered to be absent or nearly absent. The biochemical analysis is described in detail in Example 5.
For all the terpenes that were measured, the areas were 100 - 10,000 x reduced in plants of the invention as compared to other plants, including wild type and isogenic plants (Figures 3, 8, and 11) . Also the sesquiterpenes showed a similar range of 100 - 10,000 x area reduction in plants of the invention (Figures 4, 9, and 12).
As for the aldehydes, the compound cis-3-hexanal shows a significant 3-fold reduction for plants of the invention when the year is taken into account, which was calculated using an unbalanced ANOVA approach, and hexanal is about 40-fold reduced (Figures 5, 10, 13, and 14). Plants belonging to the invention therefore showed a significant reduction in terpenes, sesquiterpenes and aldehydes, in addition to absence of type VI glands, absence of green staining, and absence or strong reduction of typical tomato smell.
Further experiments were done on the green staining that results from known tomato plants upon contact with the green vegetative parts. The staining of known tomato plants was analysed and compared with substances that are released upon contact with tomato plants of the invention. The absorbance of the staining particles was determined in ethanol extracts of the stem surface. As is well known by the person skilled in the art, green colour in plants is characteristically determined by the presence of
chlorophyll.
It was therefore highly surprising that analysis showed that none of the substances that were obtained from the tomato plants used in the experiment contained
chlorophyll (EXAMPLE 6) . Chlorophyll typically shows two absorbance peaks, one at around between 420 and 460 nm and one between around 620 and 700 nm, both of which were clearly absent in all extracts. Therefore it had to be concluded that the absence of green staining of tomato plants of the invention is not due to a change in
chlorophyll content.
Also carotenoids, which account for or contribute to many coloured plant tissues, were not found among the substances that were analysed. Carotenoids have an
absorbance peak between 400 and 500 nm, which is also clearly absent in all samples, as can be seen from Figure 6. Both chlorophyll and carotenoids are water insoluble. So far, no differences were thus found in compounds that could potentially be responsible for the green staining. Extracts from plants that do show green staining showed, however, a peak in the absorbance between around 355 and 370 nm, specifically at around 360 nm. This absorbance peak is known to relate to pigments belonging to the
category of flavonoids.
The absorbance of extracts from plants of the invention was below the detection threshold of 0.05. It was therefore established that tomato plants of the invention lack flavonoids, that are present in the staining obtained from the known tomato plants (Fig. 6, Table 1) .
This additional research revealed that plants of the invention do not contain flavonoids that are present in the green vegetative parts of prior art tomato plants.
The invention thus provides a tomato plant that is characterized by the following features:
- the plant does not comprise or has at least a strongly reduced number of the glandular cells of type VI trichomes ,
- the plant does not cause green staining upon contact,
- the plant has a strongly reduced level of volatiles, in particular terpenes, sesquiterpenes and aldehydes ,
- the plant does not express or is at least strongly reduced in the typical tomato smell, and
- the plant does not comprise or has at least a strongly reduced level of flavonoids.
It was found according to the invention that these phenotypic parameters have a genetic basis in the form of a mutant allele.
Genetic mapping was carried out to determine the genetic location of the mutant allele and to confirm the number of genes involved (EXAMPLE 4) . The mapping confirmed that the trait of the invention was the effect of a
monogenic factor and one recessive mutant allele was
involved. The mutant allele was named tghVI (tomato
glandular hairless VI) .
It was found according to the invention that the mutant tghVI allele leading to the phenotype of the
invention is located on chromosome 9 of the tomato genome between the physical positions 1750800 bp and 4517648 bp, preferably between positions 1939546 bp and 2970346 bp, most preferably at about position 2454946 bp on the physical SL2.30 map of the Solanum lycopersicum genome.
The mutant tghVI allele can be identified by the presence of a molecular SNP marker that is linked to the tghVI allele. In deposit NCIMB 41845 a SNP marker linked to the tghVI allele is located at 1750800 bp on chromosome 9 of the physical Solanum lycopersicum map SL2.30 and is a nucleotide change from A to G.
The presence of the mutant tghVI allele in a plant of the invention is preferably also associated with a molecular SNP marker located on chromosome 9 at 1750800 bp on the public SL2.30 map of the Solanum lycopersicum genome, wherein the SNP is a nucleotide change from A to G. However, the absence of the SNP marker does not mean that the mutant allele is not present. A plant without the SNP marker but with the phenotype of the invention caused by the mutant allele can thus still be a plant of the invention.
The present invention thus provides a tomato plant (Solanum lycopersicum) comprising a mutant allele which allele is linked to the following phenotypic features:
- the plant does not comprise or has at least a strongly reduced number of the glandular cells of type VI trichomes , - the plant does not cause green staining upon contact,
- the plant has a strongly reduced level of volatiles, in particular terpenes, sesquiterpenes and aldehydes ,
- the plant does not express or is at least strongly reduced in the typical tomato smell, and
- the plant does not comprise or has at least a strongly reduced level of flavonoids.
Plants of the invention have modified type VI trichomes which modification leads to absent or nonfunctional type VI glandular cells or type VI glandular cells that do not function properly. The four glandular cells, i.e. the complete glandular head, are preferably completely absent. The trait of having modified type VI trichomes that lack all of the four glandular cells that make up the glandular head can for example be obtained from plants, representative seeds of which were deposited with the NCIMB under number NCIMB 41845, but the trait of lacking four glandular cells or having non-functional or mal¬ functioning glandular cells could also be obtained from other, yet unknown sources.
There had been no anticipation in the prior art that a single mutation would result in the absence of the
glandular cells of type VI trichomes, and at the same time would generate a complete absence of staining and a strong reduction or lack of a typical tomato smell, and the
invention is therefore highly surprising. The presence of various types of trichomes on tomato plants, and the
perception that all glandular trichomes produce or store various substances that can be released, thereby potentially contributing to characteristics like aroma, colour, exudate composition, and defense mechanisms, would not lead to the assumption that a single mutation could give such an
enormous and varied effect.
The use of tomato plants of the invention leads to major advantages during tomato growing. The necessity to treat the skin with a substance in advance of handling tomato plants to prevent staining is removed. The use of protective clothing or gloves when working in a tomato crop is largely reduced. In addition, no rigorous methods to remove the staining after handling tomato plants are
required anymore. The use of tomato plants of the invention will substantially facilitate tomato growing.
The absence of green staining and the reduction or absence of a typical tomato-plant aroma is the result of the modification in the composition of volatiles and flavonoids of a plant of the invention.
In one embodiment, the mutant tghVI allele is obtainable from a tomato plant comprising said mutant tghVI allele, representative seed of which was deposited with the NCIMB under deposit number NCIMB 41845.
In one embodiment, the tomato plant of the invention carrying the mutant tghVI allele is obtainable by crossing a first tomato plant with a second tomato plant, wherein one of the said plants is grown from seeds of which a
representative sample was deposited with the NCIMB under deposit accession number NCIMB 41845, or a progeny plant thereof, and selecting, preferably in the F2 generation, for plants that show no green staining from the green vegetative parts of the plant upon contact, as compared to a plant not carrying the tghVI allele.
In one embodiment, one of the said plants used for crossing to obtain a tomato plant of the invention is carrying the tghVI allele. Selection for plants comprising the tghVI allele can be done on phenotype, i.e. determining the presence of one or more of the phenotypic aspects of the trait, which are the absence of green staining, the absence or near absence of flavonoids, the reduction of volatiles, and the absence of a typical tomato smell. Furthermore selection can be done on the presence of modified type VI trichomes that lack glandular heads.
Selection can alternatively be done genetically on the presence of the relevant mutant tghVI allele, for example by using one or more molecular markers. The use of molecular markers results in a reliable outcome, and can be done in a very early plant stage.
The presence of the mutant tghVI allele also leads to the absence of the four glandular cells that form the glandular heads of type VI trichomes. The leaves of tomato plants of the invention are thus absent in fully developed type VI trichomes, and only possess type VI trichomes that lack glandular heads. Other glandular as well as non- glandular trichomes besides type VI can however be detected on a tomato plant of the invention.
The absence of glands of type VI trichomes is linked with the absence of green staining from the green vegetative parts of the plant upon contact. The green vegetative parts comprise the leaves and the stems of a plant. The presence of the tghVI allele preferably further leads to the absence of a typical tomato smell in a tomato plant of the
invention. The absence of green staining and the absence of a typical tomato smell are the result of a modification in the composition of at least flavonoids and volatiles, due to the absence of glands of type VI trichomes.
In one embodiment, the mutant tghVI allele of the invention is present in homozygous form. The trait of the invention is monogenic, i.e. caused by a single gene, and is inherited in a recessive way. With respect to the trait of the invention, plants that carry the genetic trait, i.e. the mutant tghVI allele, can suitably be identified among descendants from a cross between a plant not carrying the trait, and a plant that does carry the said trait, by growing F2 plants from seeds that are the result of the initial cross and a selfing step, and selecting plants showing the desired trait. Selecting the plants can be done phenotypically by determining the absence of green staining, and/or the absence of a typical tomato smell, and/or the absence of flavonoids and/or the absence or reduction of volatiles and/or the absence of the glandular cells of type VI trichomes or can be done through identification of the mutant allele, for example by means of the marker defined herein .
Determining absence of green staining is done in comparison to a control. Suitably, the control to determine the absence of green staining is any existing tomato plant, or an isogenic tomato plant, i.e. a plant that is
genetically identical to a plant of the invention, but does not carry the mutant tghVI allele that results in the trait of the invention.
In one embodiment selecting the plants in the F2 can be done phenotypically by determining the absence of the four glandular cells that form the glandular heads of type VI trichomes. The absence of glandular heads of type VI trichomes as mentioned throughout this application is determined on the green vegetative parts of the plant. The absence of glands of type VI trichomes should not be
determined on the fruits.
The invention furthermore relates to a cell of a tomato plant as claimed. Such cell may be either in isolated form or may be part of the complete tomato plant or parts thereof and then still constitutes a cell of the invention because such a cell harbours in its genetic constitution the genetic information that leads to the characteristics that define the tomato plant of the invention. Each cell of tomato plants of the invention carries the genetic
information that leads to phenotypic expression of said trait. Each cell thus carries the mutant tghVI allele in its genome .
The invention also relates to tissue of a plant as claimed. The tissue can be undifferentiated tissue or already differentiated tissue. Undifferentiated tissues are for example stem tips, anthers, petals, pollen and can be used in micropropagation to obtain new plantlets that are grown into new plants of the invention that have the above identified characteristics.
The invention according to a further aspect thereof relates to seeds of a plant as claimed. Although the seeds do not show the genetic trait of the tomato plant of the invention, they harbour the genetic information that when a plant is grown from the seeds makes this plant a plant of the invention that has the above identified characteristics.
The invention also relates to progeny of the plants, cells, tissues and seeds of the invention. Such progeny can in itself be plants, cells, tissues or seeds.
As used herein the word "progeny" is intended to mean the first and all further descendants from a cross with a plant of the invention that comprises the mutant tghVI allele that leads to the absence of the glandular heads of type VI trichomes. Progeny of the invention are descendants of any cross with a plant of the invention that carries the trait that leads to the absence of the glandular heads of type VI trichomes or to the other characteristics identified above .
"Progeny" also encompasses plants that carry the trait of the invention and are obtained from other plants or progeny of plants of the invention by vegetative propagation or multiplication.
The invention thus further relates to seed of the claimed plant and to parts of the plant that are suitable for sexual reproduction. Such parts are for example selected from the group consisting of microspores, pollen, ovaries, ovules, embryo sacs and egg cells. In addition, the
invention relates to parts of the plant that are suitable for vegetative reproduction, in particular cuttings, roots, stems, cells, and protoplasts.
According to a further aspect thereof the invention provides a tissue culture of the claimed plant. The tissue culture comprises regenerable cells. Such tissue culture can be derived from leaves, pollen, embryos, cotyledons, hypocotyls, meristematic cells, roots, root tips, anthers, flowers, seeds and stems.
The invention furthermore relates to hybrid seed and to a method of producing hybrid seed comprising crossing a first parent plant with a second parent plant and harvesting the resultant hybrid seed, wherein said first parent plant and/or said second parent plant is the plant as claimed.
Suitably in such hybrid seed the tghVI allele is present in homozygous form and the plant expresses the phenotype described above.
The invention also relates to inbreds and doubled haploids of tomato plants of the invention.
In one embodiment, the invention relates to tomato plants of the invention that carry the mutant tghVI allele, and having acquired said allele by introduction from a suitable source, either by conventional breeding, or genetic modification, in particular by cisgenesis or transgenesis . Cisgenesis is genetic modification of plants with a natural gene, coding for an (agricultural) trait, from the crop plant itself or from a sexually compatible donor plant.
Transgenesis is genetic modification of a plant with a gene from a non-crossable species or a synthetic gene.
The invention also relates to the germplasm of plants of the invention. The germplasm is constituted by all inherited characteristics of an organism and according to the invention encompasses at least the tghVI allele of the invention. The germplasm can be used in a breeding programme for the development of tomato plants that are lacking in or have a reduction in green staining from the green vegetative parts of the plant upon contact, and/or are lacking a typical tomato plant aroma, and/or are absent in flavonoids from the green vegetative parts of the plant, and/or are reduced in volatile compounds, and/or are lacking glands of tomato type VI trichomes.
The invention also relates to a tomato fruit that is produced by a plant of the invention. The invention further relates to a food product, comprising the fruit of a tomato plant as claimed, or parts thereof. The invention also relates to a food product in processed form.
In one aspect the invention relates to a method for production of a tomato plant comprising the tghVI allele, comprising
a) crossing a plant comprising the mutant tghVI allele with another plant;
b) selfing the resulting Fl for obtaining F2 plants; c) selecting plants comprising the tghVI allele in the F2; d) optionally performing one or more additional rounds of selfing or crossing, and subsequently selecting for a plant comprising the tghVI allele.
It is clear that the parent that provides the trait of the invention is not necessarily a plant grown directly from the deposited seeds. The parent can also be a progeny plant from the seed or a progeny plant from seeds that are identified to have the trait of the invention by other means .
In one aspect, the invention relates to a method for production of a tomato plant comprising the tghVI allele, comprising
a) crossing a plant comprising the mutant tghVI allele that leads to the absence of the glandular heads of type VI trichomes with another plant;
b) optionally backcrossing the resulting Fl with the preferred parent;
c) selecting for plants comprising the tghVI allele which leads to the absence of glandular heads of type VI trichomes in the F2 ;
d) optionally performing one or more additional rounds of selfing or crossing, and subsequently selecting for a plant comprising the tghVI allele.
The invention additionally provides a method of introducing an additional desired trait into a tomato plant comprising the tghVI allele, comprising:
a) crossing a tomato plant comprising the tghVI allele, representative seed of which were deposited with the NCIMB under deposit number NCIMB 41845, with a second tomato plant that comprises another desired trait to produce Fl progeny;
b) selecting an Fl progeny that comprises the tghVI allele and the other desired trait; c) crossing the selected Fl progeny with either parent, to produce backcross progeny;
d) selecting backcross progeny comprising the other desired trait and the tghVI allele; and
e) optionally repeating steps (c) and (d) one or more times in succession to produce selected fourth or higher backcross progeny that comprises the other desired trait and the the tghVI allele. The invention includes a tomato plant produced by this method.
In all these methods, the selection step is suitably done by means of marker analysis with the SNP marker
described above. Alternatively, the selection can also or in addition be made on the basis of one or more of the
phenotypic characteristics described above.
In one embodiment selection for plants comprising the tghVI allele is done in the Fl . In another aspect selection for the trait of the invention is started in the F2 of a cross or alternatively of a backcross. Selection in the Fl is suitably done by means of the marker. Selection in the F2 can also be done on the basis of the phenotype.
In one embodiment selection for plants comprising the tghVI allele is started in the F3 or a later generation.
In one embodiment the plant comprising the mutant tghVI allele is a plant of an inbred line, a hybrid, a doubled haploid, or of a segregating population.
The invention further provides a method for the production of a tomato plant comprising the tghVI allele using a doubled haploid generation technique to generate a doubled haploid line comprising the said mutant tghVI allele that leads to the absence of the glandular heads of type VI trichomes, a modification in the composition of flavonoids and volatiles, absence of green staining, and/or absence of a typical tomato plant smell. The invention furthermore relates to hybrid seed and to a method for producing hybrid seed comprising
crossing a first parent plant with a second parent plant and harvesting the resultant hybrid seed, wherein said first parent plant and/or said second parent plant is the plant as claimed .
In one embodiment, the invention relates to a method for producing a hybrid tomato plant comprising crossing a first parent tomato plant with a second parent tomato plant and harvesting the resultant hybrid tomato seed, in which the first parent tomato plant and/or the second parent tomato plant comprises the mutant tghVI allele.
The invention also relates to a method for the production of a tomato plant comprising modification in the composition of flavonoids and volatiles, absence of the glandular heads of type VI trichomes, absence of green staining, and/or absence of a typical tomato plant smell, by using a seed that comprises the mutant tghVI allele in its genome for growing the said tomato plant. The seeds are suitably seeds of which a representative sample was
deposited with the NCIMB under deposit number NCIMB 41845.
The invention also relates to a method for seed production comprising growing tomato plants from seeds of which a representative sample was deposited with the NCIMB under deposit number NCIMB 41845, allowing the plants to produce seeds, and harvesting those seeds. Production of the seeds is suitably done by crossing or selfing.
In one embodiment, the invention relates to a method for the production of a tomato plant comprising the mutant tghVI allele by using tissue culture. The invention
furthermore relates to a method for the production of a tomato plant comprising the mutant tghVI allele by using vegetative reproduction. In one embodiment, the invention relates to a method for the production of a tomato plant comprising the mutant tghVI allele by using a method for genetic modification to introgress the mutant tghVI allele into the tomato plant. Genetic modification comprises transgenic modification or transgenesis , using a gene from a non-crossable species or a synthetic gene, and cisgenic modification or cisgenesis, using a natural gene, coding for an (agricultural) trait, from the crop plant itself or from a sexually compatible donor plant.
The invention also relates to a breeding method for the development of tomato plants that comprise modification in the composition of flavonoids and volatiles, absence of the glandular heads of type VI trichomes, absence of green staining, and/or absence or strong reduction of a typical tomato smell, wherein germplasm comprising the mutant tghVI allele is used. Representative seed of said plant comprising the mutant tghVI allele and being representative for the germplasm was deposited with the NCIMB under deposit number NCIMB 41845.
In a further embodiment the invention relates to a method for the production of a tomato plant comprising the mutant tghVI allele wherein progeny or propagation material of a plant comprising the mutant tghVI allele is used as a source to introgress the mutant tghVI allele into another tomato plant. Representative seed of said plant comprising the mutant tghVI allele was deposited with the NCIMB under deposit number NCIMB 41845.
The invention provides preferably a tomato plant showing modification in the composition of flavonoids and volatiles, absence of the glandular heads of type VI trichomes, absence of green staining, and/or absence or strong reduction of a typical tomato plant smell, which plant is obtainable by any of the methods herein described.
A mutant allele can be identified by the use of a molecular marker. A mutant allele can alternatively be identified by the position on a genetic map, or by
indication of the location on a linkage group or chromosome. When a mutant allele is not linked to a specific molecular marker any longer, but its position on a chromosome as defined on a genetic map is unaltered, this mutant allele is still the same as when it was linked to the molecular marker. The genetic trait that it confers is therefore also still the same.
The ,genetic trait' is the trait or characteristic that is conferred by the mutant tghVI allele. The genetic trait can be identified phenotypically, for example by performing visual observations or biochemical analyses.
However, also plant stages for which no phenotypic assay can be performed do carry the genetic information that leads to the genetic trait. ,Trait' or ,phenotypic trait' can be used instead of ,genetic trait' .
In the absence of molecular markers, equivalence to the mutant tghVI allele can be determined by an allelism test. To perform an allelism test, material that is
homozygous for the tghVI allele is crossed with material that is homozygous for the mutant allele to be tested. When no segregation for the trait to be observed is present in the F2 of the cross, the unknown mutant allele has been proven to be the same as the tghVI allele.
Genetic maps can vary according to the method by which they are assembled. A person skilled in the art knows how to compare and combine genetic maps, whereby differences between genetic maps can be eliminated or minimized.
Information from one genetic map can therefore be transferred or translated to another genetic map. The positions as used herein are physical positions based on the public physical map of the tomato genome SL2.30 (version of August 2010, http://solgenomics.net/organism/
solanum_lycopersicum/genome) .
DEPOSIT
Seeds of Solanum lycopersicum 11R-5000 that comprise the mutant tghVI allele of the invention were deposited with NCIMB Ltd, Ferguson Building, Craibstone Estate, Bucksburn, Aberdeen AB21 9YA, UK on 13 June 2011 under deposit
accession number NCIMB 41845.
FIGURES
Figure 1: Type VI trichome Solanum lycopersicum
(Rang et al . J. Exp. Bot 61(4), 1053-1064, detail Suppl . Material, (2010))
Figure 2: A: Wildtype TR306-1 type VI trichomes with glandular head. B: mutant 3432-1 type VI trichomes with glandular heads absent.
Figure 3: Measurements in 2011 of various terpenes in plants of the invention (Toll/013) as compared to normal wild-type tomato plants (Toll/012, Toll/014-019); n.d. = not detected
Figure 4: Measurements in 2011 of various
sesquiterpenes in plants of the invention (Toll/013) as compared to normal wild-type tomato plants (Toll/012,
Toll/014-019); n.d. = not detected
Figure 5: Measurements in 2011 of various aldehydes in plants of the invention (Toll/013) as compared to normal wild-type tomato plants (Toll/012, Toll/014-019); n.d. = not detected Figure 6: Absorbance of tomato staining particles. The order of the accessions in the legenda is the order of the graph lines from top to bottom.
Figure 7: Acyl sugar measurements. The results are given for glucose in nmol/cm2 leaf disc.
Figure 8: Measurements in 2012 of various terpenes in plants of the invention (ΤΌ12/136, 137) as compared to an isogenic plant (ΤΌ12/135) , normal wild-type tomato plants, and LA0259 (hi mutant); n.d. = not detected
Figure 9: Measurements in 2012 of various
sesquiterpenes in plants of the invention (ΤΌ12/136, 137) as compared to an isogenic plant (ΤΌ12/135) , normal wild-type tomato plants, and LA0259 (hi mutant); n.d. = not detected
Figure 10: Measurements in 2012 of various aldehydes in plants of the invention (ΤΌ12/136, 137) as compared to an isogenic plant (ΤΌ12/135) , normal wild-type tomato plants, and LA0259 (hi mutant); n.d. = not detected
Figure 11: Combined data of Fig. 3 and Fig. 8
Figure 12: Combined data of Fig. 4 and Fig. 9 Figure 13: Combined data of Fig. 5 and Fig. 10
Figure 14 : Unbalanced ANOVA of aldehyde measurement data .
The invention will be further illustrated in the Examples that follow.
EXAMPLES EXAMPLE 1
Creation of tomato plants of the invention
Seeds of two tomato breeding lines, TR306 and T029, were treated with ems (ethyl methane sulfonate) by
submergence of approximately 10.000 seeds into an aerated solution of 0.5% (w/v) ems during 24 hours at room
temperature . The treated seeds were germinated and the resulting plants were grown in a greenhouse to produce M2 seeds.
After maturation, M2 seeds were harvested and bulked in one pool. The resulting pool of M2 seeds was used as starting material to identify individual M2 plants that were absent in green staining upon contact with the green
vegetative plant parts.
The efficacy of the genetic modification procedure was assessed by determining the occurrence of bleached plants, which is indicative for chlorophyll loss due to modifications in genes directly or indirectly involved in the formation or accumulation of chlorophyll.
EXAMPLE 2
Phenotypic identification of a plant of the invention
M2 tomato seeds were germinated in soil and grown to small plantlets. Subsequently, approximately 7000 randomly chosen plants were transferred for a seedling screen.
Plants were touched to establish whether upon making contact the green vegetative parts would leave a yellowish or greenish substance on the skin. Three mutant plants were identified that, upon making contact, did not leave green staining. In addition, it was observed that the mutant plants did not give off the aroma that is typical for tomato plants. The mutant plants that were developed with this trait have the identification codes M2-2517, M2-4416, and M2-T029-mut. Seeds from M2-2517 were multiplied and resulted in population 11R-5000, which were deposited with the NCIMB under number NCIMB 41845.
The green plant parts of the mutant plants were visually observed by use of a binocular, and compared with normal wild type (WT) tomato plants. The microscopic observation showed that the glandular heads of type VI trichomes, which are made up of four glandular cells, were not present among the glands of the mutant tomato plants. It was therefore concluded that there was linkage between the absence of type VI glands and the absence of green staining.
EXAMPLE 3
Transfer of the trait of the invention to other tomato plants
Plants of the invention were crossed with wild type (WT) tomato plants, which do not carry the trait of the invention. The resulting Fl from this cross had the same phenotype as the WT plant, i.e. it did show green staining upon establishing contact. When the trichomes were observed, the Fl was found to have normal type VI trichomes, with the four glandular cells to form the glandular head.
The F2 segregated in a manner that corresponds with a monogenic recessive inheritance of the trait of the invention. Both the absence of green staining and the absence of four glandular cells of type VI trichomes
segregated in the same way and both aspects were always observed together on the same plants, indicating there was co-segregation of the two aspects.
The trait of the invention could be brought into a wild type tomato plant by crossing the wild type plant with a plant of the invention and selecting for the desired phenotype in the F2 of that cross, either by selection on absence of green staining, or by selection on absence of four glandular cells of type VI trichomes. EXAMPLE 4
Genetic mapping and marker development
A population of 90 F2 plants, as obtained from Example 3, were genotyped with 800 SNP markers. 329 of these SNP markers were reliably polymorphic and were used to do a QTL analysis for the absence of green staining. As expected for a monogenic trait, one mutant allele was located, positioned on chromosome 9. QTL mapping resulted in locating the mutant allele at around a physical position of 2454946 bp on the public SL2.30 map, with a LOD score of 41. For this position the mutant allele explained 88% of the variance of the trait, which confirms the monogenic nature.
The SNP marker that correlated most closely to the mutant allele is located on chromosome 9 at 1750800 bp on the public SL2.30 map of the Solanum lycopersicum genome, wherein the SNP is a nucleotide change from A to G. This molecular marker can be used to identify the presence of the mutant allele in plants grown from seeds as deposited under NCIMB number 41845.
The new mutant allele was provisionally named tghVI (tomato glandular hairless VI). Other plants that comprise the same mutant tghVI allele of the invention might also be linked to the A/G SNP on position 1750800 bp of the public SL2.30 map, but can optionally also be linked to another molecular SNP marker or any other molecular marker that is polymorphic in a certain population.
EXAMPLE 5
Volatile analysis of plants of the invention
Plants of the invention were analysed for a large number of volatiles, and compared with a tomato plant that did not contain the mutant tghVI allele of the invention. A tomato plant to be measured was placed in a plastic bag for 10 minutes. Next, the plants were touched to allow the release of the relevant compounds to be analysed.
Subsequently Solid Phase Microextraction (SPME) was
performed by introducing and exposing the fibre material to the gas inside the plastic bag for 15 minutes at room temperature .
After thermal desorption of the volatiles, three groups of compounds were analysed by using gas
chromatography coupled to mass spectrometry (GC-MS) :
terpenes, sesquiterpenes, and aldehydes. Remarkably, for all the volatiles within these groups it was found that they were significantly reduced as compared to the wild type plant (Fig. 3-14). Some volatiles were even below detection level and therefore considered to be absent.
EXAMPLE 6
Absorbance of staining particles
A number of tomato plants were analysed for the green staining. Included were plants of the invention, isogenic plants lacking the mutant allele of the invention, wild type (normal) tomato plants, and plants from the art that contain the hi (hairless) mutant allele (Fig. 6) .
Plants were analysed at about 7-8 weeks after sowing. A metal spatula was used to wipe along the stem of each plant in the experiment, thus covering a surface area of approximately 75cm2. The resulting substance present on the spatula was dissolved in 1.0 ml ethanol. After drying the spatula, this procedure was repeated several times for each plant on different positions covering the whole stem surface .
The extracts from the individual plants were centrifuged for 5 minutes at 13000 rpm to remove debris, after which each extract was diluted with an equal volume of ethanol. A UV-VIS spectrophotometer was used to measure the absorbance of the solutions.
Although there were differences in the heights of the peaks of the plants that did not belong to the invention, all showed a maximum absorbance at the same
wavelength of around 360 nm, indicating the same type of pigments. The absorbance at this wavelength indicates
pigments belonging to the category of flavonoids.
There are various categories of flavonoids, which typically show a maximum absorbance at two different ranges of wavelenghts, whereby the exact peak is depending on the number and type of the substituents that are bound to the basic flavonoid structure. The first absorbance peak is around between 210-290 nm, which is not in the visible part of the spectrum. The second absorbance peak can range
between 300-400 nm or even up to 500 nm, which partly, from around 380 nm lies in the visible part of the spectrum. For plants of the invention, no absorbance at 360 nm was
measured above the detection threshold of 0.05 (Table 1,
Fig. 6) .
Table 1
T012/135 Tol2/136 T012/137 Tol2/138 T012/139 Tol2/142 T012/143
Sample mq 2* 2* 2* 2* 2* 2* 2* diluted diluted diluted diluted diluted diluted diluted
Cycle CycleOl CycleOl CycleOl CycleOl CycleOl CycleOl CycleOl CycleOl
Data Data Data Data Data Data Data Data
Entries
Points Points Points Points Points Points Points Points blanc
nm T012/135 T012/136 T012/137 T012/138 T012/139 T012/142 T012/143
(mQ)
300 -0,0011 1,2034 0,0405 0,0328 1, 4071 0, 7397 0, 2915 1,1767
301 -0,0012 1,1995 0,0403 0,0323 1, 4035 0, 7383 0, 2907 1,1735
302 -0,0008 1, 1955 0,0398 0,0319 1, 3990 0, 7362 0, 2902 1,1696
303 -0,0009 1,1890 0,0401 0,0329 1, 3936 0, 7334 0, 2895 1, 1646
304 -0,0002 1,1829 0,0411 0,0327 1, 3855 0, 7304 0, 2886 1,1589
305 -0,0002 1,1740 0,0407 0,0332 1, 3764 0, 7257 0, 2874 1,1521
306 -0,0006 1, 1635 0,0403 0,0327 1, 3659 0, 7197 0, 2858 1,1439
307 0, 0002 1,1534 0,0405 0,0335 1, 3552 0, 7143 0, 2842 1,1370
308 0, 0000 1,1438 0,0406 0,0333 1, 3437 0, 7085 0, 2826 1,1296
309 0, 0001 1,1363 0,0409 0,0338 1, 3359 0, 7045 0, 2814 1,1243
310 0, 0004 1,1299 0,0408 0,0339 1, 3292 0, 7009 0, 2805 1,1205
311 0, 0005 1,1245 0,0411 0,0340 1, 3239 0, 6985 0, 2795 1,1177
312 0, 0005 1,1185 0,0409 0,0337 1, 3180 0, 6954 0, 2784 1,1137
313 0, 0007 1,1093 0,0407 0,0337 1, 3097 0, 6912 0, 2766 1,1089
314 0, 0010 1, 0971 0,0404 0,0336 1, 2987 0, 6852 0, 2739 1,1016
315 0, 0006 1,0850 0,0400 0,0335 1, 2866 0, 6787 0, 2714 1, 0941 0006 1,0713 0401 0335 2741 6725 2683 0867 0013 1,0555 0397 0334 2612 6651 2652 0777 0010 1,0401 0390 0325 2481 6582 2615 0709 0010 1,0290 0384 0322 2405 6529 2586 0663 0011 1,0225 0379 0318 2371 6513 2568 0664 0011 1,0203 0376 0314 2391 6515 2557 0696 0010 1,0233 0371 0309 2467 6558 2551 0780 0010 1,0306 0365 0306 2594 6623 2554 0897 0012 1,0399 0364 0300 2736 6697 2568 1026 0009 1,0532 0359 0299 2915 6789 2585 1178 0013 1,0699 0362 0299 3146 6913 2615 1375 0017 1,0880 0357 0300 3395 7045 2643 1594 0014 1,1083 0360 0296 3678 7192 2681 1824 0015 1,1315 0355 0294 3975 7352 2719 2090 0018 1,1541 0351 0290 4275 7511 2757 2344 0020 1,1794 0356 0292 4595 7683 2800 2621 0014 1,2037 0345 0283 4929 7853 2840 2896 0012 1,2286 0348 0282 5248 8023 2886 3171 0019 1,2530 0346 0280 5571 8197 2930 3441 0019 1,2798 0347 0284 5914 8378 2978 3739 0018 1,3070 0341 0278 6275 8565 3024 4036 0016 1,3353 0340 0277 6636 8761 3074 4346 0019 1, 3636 0338 0275 7005 8947 3128 4654 0016 1, 3914 0343 0274 7361 9135 3184 4958 0020 1,4208 0341 0278 7744 9329 3235 5261 0020 1,4503 0341 0279 8111 9531 3294 5590 0021 1,4801 0343 0276 8493 9727 3354 5907 0019 1,5069 0344 0279 8853 9910 3404 6209 0016 1,5347 0341 0277 9211 0102 3462 6523 0021 1, 5615 0348 0284 9552 0280 3517 6811 0020 1,5862 0346 0282 9878 0449 3568 7072 0022 1, 6138 0354 0286 0212 0628 3621 7362 0020 1, 6404 0352 0285 0562 0807 3678 7657 0021 1, 6670 0355 0288 0924 0990 3741 7944 0022 1, 6921 0357 0288 1221 1157 3792 8216 0019 1,7138 0357 0284 1522 1298 3835 8444 0022 1,7368 0358 0293 1797 1453 3885 8682 0022 1,7583 0362 0291 2070 1594 3927 8913 0023 1,7763 0360 0297 2280 1714 3966 9118 0023 1, 7928 0365 0297 2510 1829 4004 9292 0025 1,8087 0371 0295 2705 1934 4039 9462 0024 1,8213 0367 0298 2855 2018 4063 9604 0023 1,8313 0365 0293 2999 2084 4082 9700 0023 1,8392 0365 0296 3091 2134 4099 9784 0020 1,8459 0363 0293 3192 2176 4107 9855 0023 1,8487 0365 0294 3225 2199 4113 9884 0019 1,8494 0362 0287 3239 2202 4104 9889 363 0, 0025 1 8497 0,0361 0,0292 2 3228 1 2201 0, 4105 1 9886
364 0, 0024 1 8442 0,0352 0,0287 2 3174 1 2173 0, 4094 1 9835
365 0, 0023 1 8365 0,0346 0,0285 2 3092 1 2129 0, 4073 1 9760
366 0, 0024 1 8250 0,0349 0,0283 2 2941 1 2060 0, 4048 1 9641
367 0, 0022 1 8129 0,0345 0,0280 2 2790 1 1977 0, 4018 1 9493
368 0, 0024 1 7967 0,0342 0,0275 2 2604 1 1874 0, 3981 1 9330
369 0, 0025 1 7779 0,0338 0,0269 2 2374 1 1745 0, 3935 1 9120
370 0, 0021 1 7549 0,0329 0,0264 2 2057 1 1593 0, 3879 1 8865
371 0, 0021 1 7302 0,0323 0,0257 2 1763 1 1436 0, 3820 1 8610
372 0, 0025 1 6992 0,0327 0,0266 2 1291 1 1254 0, 3769 1 8256
373 0, 0025 1 6692 0,0320 0,0260 2 0916 1 1056 0, 3704 1 7946
374 0, 0027 1 6351 0,0319 0,0258 2 0516 1 0829 0, 3631 1 7568
375 0, 0024 1 5986 0,0307 0,0246 2 0057 1 0591 0, 3545 1 7181
376 0, 0025 1 5601 0,0297 0,0237 1 9574 1 0331 0, 3457 1 6760
377 0, 0022 1 5238 0,0292 0,0233 1 9130 1 0086 0, 3369 1 6354
378 0, 0022 1 4891 0,0287 0,0233 1 8678 0 9856 0, 3295 1 5981
379 0, 0025 1 4461 0,0276 0,0226 1 8139 0 9578 0, 3202 1 5534
380 0, 0026 1 3967 0,0269 0,0220 1 7517 0 9252 0, 3090 1 4991
381 0, 0027 1 3472 0,0258 0,0212 1 6918 0 8931 0, 2981 1 4471
382 0, 0027 1 2972 0,0248 0,0198 1 6293 0 8595 0, 2864 1 3928
383 0, 0019 1 2465 0,0235 0,0190 1 5665 0 8260 0, 2741 1 3384
384 0, 0027 1 1973 0,0226 0,0185 1 5053 0 7939 0, 2635 1 2861
385 0, 0023 1 1459 0,0214 0,0172 1 4405 0 7607 0, 2520 1 2313
386 0, 0022 1 0919 0,0203 0,0161 1 3708 0 7249 0, 2395 1 1731
387 0, 0027 1 0394 0,0194 0,0158 1 3063 0 6904 0, 2278 1 1173
388 0, 0022 0 9917 0,0178 0,0148 1 2455 0 6584 0, 2166 1 0652
389 0, 0025 0 9382 0,0171 0,0136 1 1790 0 6237 0, 2050 1 0061
390 0, 0021 0 8803 0,0163 0,0132 1 1060 0 5854 0, 1919 0 9453
391 0, 0025 0 8279 0,0154 0,0124 1 0402 0 5499 0, 1802 0 8884
392 0, 0022 0 7819 0,0145 0,0117 0 9826 0 5201 0, 1701 0 8396
393 0, 0024 0 7339 0,0140 0,0113 0 9218 0 4890 0, 1599 0 7881
394 0, 0026 0 6827 0,0129 0,0108 0 8573 0 4553 0, 1487 0 7320
395 0, 0024 0 6385 0,0127 0,0100 0 8018 0 4260 0, 1392 0 6847
396 0, 0025 0 5932 0,0119 0,0100 0 7446 0 3953 0, 1292 0 6358
397 0, 0021 0 5465 0,0113 0,0091 0 6832 0 3634 0, 1186 0 5840
398 0, 0021 0 5025 0,0103 0,0082 0 6284 0 3344 0, 1090 0 5368
399 0, 0024 0 4626 0,0101 0,0086 0 5779 0 3086 0, 1006 0 4938
400 0, 0021 0 4248 0,0096 0,0082 0 5299 0 2836 0, 0925 0 4521
The staining of the tomato plants was also analysed for the presence of phenolic compounds. Flavonoids are a class of polyphenols, the presence of which can be
determined by using Folin-Ciocalteu reagent.
The same diluted ethanol extract as was used for the absorbance measurements was used to measure the amount of phenolics. The phenolics are measured against a
spectrophotometric standard, for which gallic acid was used. The measurement of phenolics was presented as gallic acid equivalents (GAE) in yg/g gallic acid (Table 2) . From the table it can be derived that plants of the invention are significantly reduced in polyphenol content, which confirms the absence of flavonoids that was determined through the absorbance measurements.
TABLE 2
Phenolics are calculated as GAE in the extracts taken from the whole stem surface. EXAMPLE 7
Acyl sugar measurements
AAcyl sugars' or acylated sugars were thought to possibly contribute to the green staining from tomato plants, since they are known to be greasy or sticky
compounds that do not dissolve in water. An experiment was set up to determine whether plants of the invention
contained a reduction or absence of acyl sugars as compared to prior art tomato plants.
Acylated sugars are sugar compounds such as glucose or sucrose that are covalently bound to a fatty acid via an ester bond. To measure the acyl sugar contents in extracts taken from leaf discs, it was chosen to first detach the sugar and the fatty acid components. The bond between the components is broken by saponification, whereby hydrolysis of the ester bond takes place. After saponification the resulting sugar content can be measured.
The same accessions were used as in Example 6. Twelve leaf discs were taken with a cork borer of
approximately 9.5 mm diameter. Discs were taken from the 2nd, 3rd and 4th leaf counted from the shoot apex of a plant, avoiding main veins, from plants of about 10-12 weeks old. Discs were placed in vials with 2 ml dichloromethane and rotated softly for 30 sec to dissolve surface compounds.
0.1 ml of leaf surface extract was evaporated under nitrogen gas and redissolved in 0.5 ml 0.1M NaOH solution in methanol. Samples were heated to 60°C in a water bath for 15 min to allow saponification, i.e. breaking of the ester bond with NaOH and heat. Samples were then cooled and filtered.
No sugars could be detected in crude extracts before saponification, indicating that no sugars were dissolved from the leaf surface or leaking from wound surfaces. After saponification the sugar content was determined by Ion Exchange Chromatography on a Dionex HPLC. Concentration of sugars after saponification was then calculated to be equal to acylated sugars before saponification.
No acylated sucrose could be identified in any of the samples. Acylated glucose was identified in all samples, and although there was variation, the differences were not significant (Students t-test P>0.1; Fig. 7). Plants of the invention ranked among the ones with the highest acylated glucose content, indicating that there was certainly no absence or strong reduction of acyl sugars involved in the trait of the invention.
CLAUSES
The invention is defined in the claims that follow and is further described in the following numbered clauses:
1. Tomato plant (Solanum lycopersicum L.) comprising a mutant allele that leads to modification in the composition of flavonoids and volatiles as a result of the absence of the glandular heads of type VI trichomes, as compared to a plant not carrying the said genetic trait, which mutant allele is as comprised in a tomato plant representative seed of which was deposited with the NCIMB under deposit number NCIMB 41845.
2. Tomato plant as described in clause 1, wherein the said mutant allele is located on chromosome 9 between positions 1750800 bp and 4517648 bp, preferably between positions 1939546 bp and 2970346 bp, most preferably around position 2454946 bp on a physical map of the genome of
Solanum lycopersicum .
3. Tomato plant as described in clause 1 or 2, obtainable by crossing a first tomato plant with a second tomato plant, wherein one of the said plants is grown from seeds as deposited with the NCIMB under deposit accession number NCIMB 41845, or a progeny plant thereof, and
selecting, preferably in the F2 generation, for plants that are modified in the composition of flavonoids and volatiles as a result of the absence of the glandular heads of type VI trichomes, as compared to a plant not carrying the said genetic trait.
4. Tomato plant as described in clause 1 or 2, obtainable by crossing a first tomato plant with a second tomato plant, wherein one of the said plants is carrying the said genetic trait that results in modification in the composition of flavonoids and volatiles as a result of the absence of the glandular heads of type VI trichomes, and selecting, preferably in the F2 generation, for plants that are modified in the composition of flavonoids and volatiles as a result of the absence of the glandular heads of type VI trichomes, as compared to a plant not carrying the said genetic trait.
5. Tomato plant as described in any of the clauses 1 to 4, wherein the mutant allele leads to the absence of green staining from the green vegetative parts of the plant upon contact and/or the absence or reduction of a typical tomato aroma.
6. Seed of a tomato plant as described in any one of the clauses 1-5, wherein the plant that can be grown from the seed comprises the mutant allele as defined in clause 1 or 2.
7. Progeny of a tomato plant as described in any one of the clauses 1-5 or of tomato seed as described in clause 6, comprising the mutant allele as defined in clause 1 or 2.
8. Propagation material suitable for producing a plant as described in any one of the clauses 1-5 and 7 or seed as described in clause 6, wherein the propagation material is suitable for sexual reproduction, and is in particular selected from microspores, pollen, ovaries, ovules, embryo sacs and egg cells, or is suitable for vegetative reproduction, and is in particular selected from cuttings, roots, stems, cells, protoplasts, or is suitable for tissue cultures of regenerable cells, and is in
particular selected from leaves, pollen, embryos, cotyledon, hypocotyls, meristematic cells, roots, root tips, anthers, flowers, seeds and stems, wherein a plant produced from the propagation material comprises the mutant allele as defined in clause 1 or 2.
9. Tomato plant as described in any of the clauses 1-5 and 7, seed as described in clause 6, or propagation material as described in clause 8, wherein the said mutant allele in the genome of seeds of which a representative sample was deposited as NCIMB 41845 is linked to a molecular SNP marker on position 1750800 of the public physical map SL2.30, wherein the SNP is a nucleotide change from A to G.
10. A tomato fruit of a plant as described in any one of the clauses 1-5 and 7.
11. Food product, comprising the tomato fruit as described in clause 10, or parts thereof, optionally in processed form.
12. Use of a plant as described in any one of the clauses 1-5, 7 and 9, or plants produced from the seed of clause 6, or from the propagation materials as described in clause 8 as germplasm in a breeding programme for the development of tomato plants that are modified in the composition of flavonoids and volatiles as a result of the absence of the glandular heads of type VI trichomest, as compared to a plant not carrying the mutant allele of the invention .
13. Use of the mutant allele as defined in clause 1 or 2 for the development of tomato plants that are modified in the composition of flavonoids and volatiles as a result of the absence of the glandular heads of type VI trichomes.
14. Use of the molecular marker as defined in clause 9 for the development of tomato plants that are modified in the composition of flavonoids and volatiles as a result of the absence of the glandular heads of type VI trichomes.

Claims

1. Tomato plant (Solanum lycopersicum L.) that is characterized by the following features:
- the plant does not comprise or has at least a strongly reduced number of the glandular cells of type VI trichomes ,
- the plant does not cause or is at least strongly reduced in green staining upon contact,
- the plant has a strongly reduced level of volatiles, in particular terpenes, sesquiterpenes and aldehydes ,
- the plant does not express or is at least strongly reduced in the typical tomato smell, and
- the plant does not comprise or has at least a strongly reduced level of flavonoids.
2. Tomato plant as claimed in claim 1, which plant carries a mutant tghVI allele as present in the genome of seeds of which a representative sample was deposited under accession number NCIMB 41845, which allele results in one or more, preferably all of the features as defined in claim 1.
3. Tomato plant as claimed in claim 2, wherein in the genome of the seeds of which a representative sample was deposited under accession number NCIMB 41845 the mutant tghVI allele is linked to a molecular SNP marker on position 1750800 of the public physical map SL2.30, wherein the SNP is a nucleotide change from A to G.
4. Tomato plant as claimed in any one of the claims 1-3, obtainable by introgression of the mutant tghVI allele from a plant grown from seeds of which a representative sample was deposited under accession number NCIMB 41845 into a plant not carrying the allele, wherein the plant has acquired one or more, preferably all, of the features defined in claim 1.
5. Tomato seed that can be grown into a tomato plant as claimed in any one of the claims 1-4.
6. Seed of a tomato plant as claimed in any one of the claims 1-4, wherein the seed comprises at least one mutant tghVI allele, but is preferably homozygous for the mutant tghVI allele.
7. Progeny of a tomato plant as claimed in any one of the claims 1-4 or of tomato seed as claimed in claim 5 or
6, wherein a progeny plant comprises at least one mutant tghVI allele, but is preferably homozygous for the mutant tghVI allele.
8. Propagation material suitable for producing a plant as claimed in any one of the claims 1-4 and 7 or seed as claimed in claim 5 or 6, wherein the propagation material is suitable for sexual reproduction, and is in particular selected from microspores, pollen, ovaries, ovules, embryo sacs and egg cells, or is suitable for vegetative
reproduction, and is in particular selected from cuttings, roots, stems, cells, protoplasts, or is suitable for tissue cultures of regenerable cells, and is in particular selected from leaves, pollen, embryos, cotyledon, hypocotyls, meristematic cells, roots, root tips, anthers, flowers, seeds and stems, wherein a plant produced from the
propagation material comprises at least one mutant tghVI allele, but is preferably homozygous for the mutant tghVI allele .
9. Tomato plant as claimed in claim 7, characterized by one or more, preferably all, of the features defined in claim 1.
10. A tomato fruit of a plant as claimed in any one of the claims 1-4 and 7.
11. Food product, comprising the tomato fruit as claimed in claim 10, or parts thereof, optionally in
processed form.
12. Use of a tomato plant as claimed in any one of the claims 1-4, 7 and 9, or plants produced from the seed of claim 5 or 6, or from the propagation materials as claimed in claim 8 as germplasm in a breeding programme for the development of tomato plants that comprise a mutant tghVI allele and are characterized by one or more, preferably all, of the features defined in claim 1.
13. Use of the mutant tghVI allele for the
development of tomato plants that are characterized by one or more, preferably all, of the features defined in claim 1.
14. Use of a molecular marker located on position 1750800 of the public physical map SL2.30 for the
development of tomato plants that comprise a mutant tghVI allele and are characterized by one or more, preferably all, of the features defined in claim 1, wherein the marker is a SNP marker comprising a nucleotide change from A to G.
EP13702652.2A 2012-02-07 2013-02-07 TOMATO PLANT COMPRISING A MUTANT tghVI ALLELE Withdrawn EP2811822A1 (en)

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