EP2247741A4 - Paired-end reads in sequencing by synthesis - Google Patents

Paired-end reads in sequencing by synthesis

Info

Publication number
EP2247741A4
EP2247741A4 EP09706204A EP09706204A EP2247741A4 EP 2247741 A4 EP2247741 A4 EP 2247741A4 EP 09706204 A EP09706204 A EP 09706204A EP 09706204 A EP09706204 A EP 09706204A EP 2247741 A4 EP2247741 A4 EP 2247741A4
Authority
EP
European Patent Office
Prior art keywords
paired
sequencing
synthesis
end reads
reads
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP09706204A
Other languages
German (de)
French (fr)
Other versions
EP2247741A2 (en
Inventor
Timothy Harris
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Helicos BioSciences Corp
Original Assignee
Helicos BioSciences Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US12/025,033 external-priority patent/US7767400B2/en
Application filed by Helicos BioSciences Corp filed Critical Helicos BioSciences Corp
Publication of EP2247741A2 publication Critical patent/EP2247741A2/en
Publication of EP2247741A4 publication Critical patent/EP2247741A4/en
Withdrawn legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
EP09706204A 2008-02-03 2009-02-03 Paired-end reads in sequencing by synthesis Withdrawn EP2247741A4 (en)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US12/025,033 US7767400B2 (en) 2008-02-03 2008-02-03 Paired-end reads in sequencing by synthesis
US4739708P 2008-04-23 2008-04-23
US9891008P 2008-09-22 2008-09-22
PCT/US2009/032970 WO2009097626A2 (en) 2008-02-03 2009-02-03 Paired-end reads in sequencing by synthesis

Publications (2)

Publication Number Publication Date
EP2247741A2 EP2247741A2 (en) 2010-11-10
EP2247741A4 true EP2247741A4 (en) 2011-02-23

Family

ID=40913521

Family Applications (1)

Application Number Title Priority Date Filing Date
EP09706204A Withdrawn EP2247741A4 (en) 2008-02-03 2009-02-03 Paired-end reads in sequencing by synthesis

Country Status (2)

Country Link
EP (1) EP2247741A4 (en)
WO (1) WO2009097626A2 (en)

Families Citing this family (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1354064A2 (en) 2000-12-01 2003-10-22 Visigen Biotechnologies, Inc. Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity
GB0514935D0 (en) 2005-07-20 2005-08-24 Solexa Ltd Methods for sequencing a polynucleotide template
US20100279882A1 (en) * 2009-05-01 2010-11-04 Mostafa Ronaghi Sequencing methods
US10036063B2 (en) 2009-07-24 2018-07-31 Illumina, Inc. Method for sequencing a polynucleotide template
CN102858995B (en) 2009-09-10 2016-10-26 森特瑞隆技术控股公司 Targeting sequence measurement
US10174368B2 (en) 2009-09-10 2019-01-08 Centrillion Technology Holdings Corporation Methods and systems for sequencing long nucleic acids
US8753816B2 (en) * 2010-10-26 2014-06-17 Illumina, Inc. Sequencing methods
US20120252682A1 (en) * 2011-04-01 2012-10-04 Maples Corporate Services Limited Methods and systems for sequencing nucleic acids
KR102061257B1 (en) 2012-11-19 2019-12-31 앱톤 바이오시스템즈, 인코포레이티드 Digital Analysis Of Molecular Analytes Using Single Molecule Detection
US10829816B2 (en) 2012-11-19 2020-11-10 Apton Biosystems, Inc. Methods of analyte detection
CN105112516A (en) * 2015-08-14 2015-12-02 深圳市瀚海基因生物科技有限公司 Single-molecule targeted sequencing method, device and system and application
KR20190133016A (en) 2017-03-17 2019-11-29 앱톤 바이오시스템즈, 인코포레이티드 Sequencing and High Resolution Imaging
EP3853382A4 (en) * 2018-09-19 2022-06-22 Apton Biosystems, Inc. Densely-packed analyte layers and detection methods
AU2020412459B2 (en) 2019-12-23 2022-12-08 Singular Genomics Systems, Inc. Methods for long read sequencing

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7432048B2 (en) * 1996-11-29 2008-10-07 Third Wave Technologies, Inc. Reactions on a solid surface
US6951722B2 (en) * 1999-03-19 2005-10-04 Takara Bio Inc. Method for amplifying nucleic acid sequence
US7060436B2 (en) * 2000-06-17 2006-06-13 Third Wave Technologies, Inc. Nucleic acid accessible hybridization sites
EP1448789A4 (en) * 2001-10-30 2007-01-03 Nanomics Biosystems Pty Ltd Device and methods for directed synthesis of chemical libraries
US7575865B2 (en) * 2003-01-29 2009-08-18 454 Life Sciences Corporation Methods of amplifying and sequencing nucleic acids
US20070099212A1 (en) * 2005-07-28 2007-05-03 Timothy Harris Consecutive base single molecule sequencing

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
ZAJAC ET AL: "Expression profiling of signature gene sets with trinucleotide threading", GENOMICS, ACADEMIC PRESS, SAN DIEGO, US, vol. 91, no. 2, 3 December 2007 (2007-12-03), pages 209 - 217, XP022426734, ISSN: 0888-7543, DOI: 10.1016/J.YGENO.2007.10.012 *

Also Published As

Publication number Publication date
EP2247741A2 (en) 2010-11-10
WO2009097626A2 (en) 2009-08-06
WO2009097626A3 (en) 2009-09-24

Similar Documents

Publication Publication Date Title
EP2247741A4 (en) Paired-end reads in sequencing by synthesis
GB0802457D0 (en) Improvements in or relating to stairlifts
ZA201008295B (en) Improvements in feedwells
IL208990A0 (en) Novel phenylimidazopyrazines
GB0801268D0 (en) Improvements to electrolysis
PL2342156T5 (en) Multifingered scale
GB2457527B (en) Ruthenium Complex
GB0709551D0 (en) Improvements in or relating to stairlifts
GB2463734B (en) Improvements in or relating to stairlifts
GB0810840D0 (en) Improvements in or relating to stairlifts
GB0804752D0 (en) Improvements in or relating to wall-ties
GB201107067D0 (en) Improvements in or relating to ablutionary installations
GB0718710D0 (en) Improvements in or relating to stairlifts
GB2457767B (en) Improvements in or relating to stairlifts
GB0823366D0 (en) Synthesis
GB0821983D0 (en) Improvements in or relating to structural members
GB2488051B (en) Improvements in or relating to stairlifts
AU337455S (en) Water purifier
GB0810407D0 (en) Improvements in platinum compounds
GB2464996B (en) Improvements in or relating to back boxes
GB0823515D0 (en) Improvements in bivvies
EP2476111A4 (en) Improvements in piano construction
GB0801110D0 (en) Synthesis
AU4328P (en) TPP6 Mangifera indica
AU4327P (en) TPP5 Mangifera indica

Legal Events

Date Code Title Description
PUAI Public reference made under article 153(3) epc to a published international application that has entered the european phase

Free format text: ORIGINAL CODE: 0009012

17P Request for examination filed

Effective date: 20100708

AK Designated contracting states

Kind code of ref document: A2

Designated state(s): AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO SE SI SK TR

AX Request for extension of the european patent

Extension state: AL BA RS

A4 Supplementary search report drawn up and despatched

Effective date: 20110121

RIC1 Information provided on ipc code assigned before grant

Ipc: C12Q 1/68 20060101ALI20110117BHEP

Ipc: C12P 19/34 20060101AFI20100903BHEP

DAX Request for extension of the european patent (deleted)
17Q First examination report despatched

Effective date: 20111213

GRAP Despatch of communication of intention to grant a patent

Free format text: ORIGINAL CODE: EPIDOSNIGR1

STAA Information on the status of an ep patent application or granted ep patent

Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN

18D Application deemed to be withdrawn

Effective date: 20130320