EP1969131A1 - Process for the preparation of delta lactones - Google Patents
Process for the preparation of delta lactonesInfo
- Publication number
- EP1969131A1 EP1969131A1 EP06829671A EP06829671A EP1969131A1 EP 1969131 A1 EP1969131 A1 EP 1969131A1 EP 06829671 A EP06829671 A EP 06829671A EP 06829671 A EP06829671 A EP 06829671A EP 1969131 A1 EP1969131 A1 EP 1969131A1
- Authority
- EP
- European Patent Office
- Prior art keywords
- formula
- enantiomerically enriched
- enriched compound
- dera
- seq
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P17/00—Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
- C12P17/02—Oxygen as only ring hetero atoms
- C12P17/06—Oxygen as only ring hetero atoms containing a six-membered hetero ring, e.g. fluorescein
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07B—GENERAL METHODS OF ORGANIC CHEMISTRY; APPARATUS THEREFOR
- C07B53/00—Asymmetric syntheses
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D309/00—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings
- C07D309/02—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
- C07D309/08—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings having no double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
- C07D309/10—Oxygen atoms
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D309/00—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings
- C07D309/16—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings having one double bond between ring members or between a ring member and a non-ring member
- C07D309/28—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings having one double bond between ring members or between a ring member and a non-ring member with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
- C07D309/30—Oxygen atoms, e.g. delta-lactones
Definitions
- the invention relates to a process for the preparation of enantiomerically enriched ⁇ -lactones.
- the invention also relates to use of said ⁇ - lactones in food or cosmetics or as pharma intermediates.
- ⁇ -lactones such as saturated ⁇ -lactones, ⁇ , ⁇ -unsaturated ⁇ -lactones and 3-hydroxy- ⁇ -lactones can suitably be used as (intermediates in the production of) flavors and/or fragrances and/or pharmaceuticals.
- the ⁇ , ⁇ -unsaturated (-)-(R)-massoialactone is useful as a flavoring agent with a butter and milk-like flavor (JP 08002891 B4, JP 07080867 B4). It is used as a flavor enhancer (JP 3523127 B2) and as an antibacterial agent (KR 2000066367 A).
- the saturated (+)-(R)- ⁇ -decalactone is for example used as flavor in dairy products, beverages, dentifrice, chewing gum, food and as part of fragrance compositions for colognes, perfumed articles, detergents, fabric softeners and hair preparations (US 6271194 B1 ). It is used as a fungal growth inhibitor (US 6060507 A).
- the ⁇ , ⁇ -unsaturated (-)-(R)-dodec-2-enolactone for example, is a flavor-enhancer of sweet fermentation flavor for traditional Japanese food (JP 3523127 B2).
- Saturated (+)- (R)- ⁇ -dodecalactone for example, is a widely used flavor and is part of fragrance compositions (US 6271194 B1 ).
- the ⁇ , ⁇ -unsaturated ⁇ -pentadec-2-enolactone for example, is a testosterone-5a-reductase inhibitor and used as such in hair growth stimulants (JP 2525179 B2).
- some ⁇ -lactones can be produced via chemical synthesis, for example, the compound ((-)-(R)-massoialactone) of formula (I)
- R 2 stands for CH 3 , CH 3 (CH 2 ) 2 , CH 3 (CH 2 ) 4 , CH 3 (CH 2 ) 6 was described by A. Nobuhara, Agr. Biol. Chem., (1968) vol. 32, no. 8, p1016-1020. In this route, the corresponding carbonyl compound was reacted in several steps (e.g. Reformatsky reaction, Grignard reaction, reduction etc.) to form the desired racemic compound of formula (3).
- steps e.g. Reformatsky reaction, Grignard reaction, reduction etc.
- a process comprising the step of a) reacting acetaldehyde and a substituted acetaldehyde of formula HC(O)CH 2 R, wherein R stands for an alkyl of at least 5 C-atoms, a cycloalkyl, an alkenyl, an alkynyl or for an aryl, wherein R may be substituted, in the presence of an aldolase to form the corresponding enantiomerically enriched compound of formula (1 )
- ⁇ -lactones can be prepared with a high enantiomeric excess (e.e.) without the need for expensive resolution agents or chiral precursors.
- the yield obtained is usually high.
- the process can be performed in water, making this process very attractive from an environmental point of view.
- the ⁇ -lactones may be prepared from readily available and cost effective starting materials.
- R preferably stands for an alkyl of at most 20 C-atoms, more preferably of at most 12 C-atoms; a cycloalkyl of at least 3 and at most 7 C-atoms, preferably at least 5 C-atoms, more preferably of at most 6 C-atoms; an alkenyl of at most 20 C-atoms, preferably at least 5 C-atoms, more preferably of at most 12 C- atoms; an alkynyl of at most 20 C-atoms, preferably at least 5 C-atoms, more preferably of at most 12 C-atoms; or for phenyl.
- the alkyl, alkenyl or alkynyl may be branched, but is preferably linear.
- linear alkyls in the definition of R include n-pentyl, n-hexyl, n-heptyl, n-octyl, n-nonyl.
- branched alkyls in the definition of R include 1 -methyl-butyl, 2-methyl-butyl, 3-methyl-butyl, 1-methyl-pentyl, 2- methyl-pentyl, 3-methyl-pentyl, 4-methyl-pentyl, 1 -ethyl-butyl, 2-ethyl-butyl, 1-methyl- hexyl, 2-methyl-hexyl, 3-methyl-hexyl, 4-methyl-hexyl, 5-methyl-hexyl, 1-ethyl-pentyl, 2- ethyl-pentyl, 3-ethyl-pentyl.
- linear alkenyls in the definition of R include pent-1-enyl, pent-2-enyl, pent-3-enyl, pent-4-enyl etc.
- branched alkenyls in the definition of R include 1-methyl-but-1-enyl, 2-methyl-but-1-enyl, 3-methyl-but-1- enyl, 1-methyl-but-2-enyl, 2-methyl-but-2-enyl, 3-methyl-but-2-enyl, 1-methyl-but-3- enyl, 2-methyl-but-3-enyl, 3-methyl-but-3-enyl, 1-methyl-pent-1-enyl, 2-methyl-pent-1- enyl, 3-methyl-pent-1-enyl, 4-methyl-pent-1-enyl, 1-methyl-pent-2-enyl, 2-methyl-pent- 2-enyl, 3-methyl-pent-2-enyl, 4-methyl-pent-2-enyl, 1-methyl-pent-2-enyl, 2-
- linear alkynyls in the definition of R include pent-1-ynyl, pent-2-ynyl, pent3-ynyl, pent-4-ynyl etc.
- R stands for a linear alkyl, a linear alkenyl or for phenyl.
- C-atoms of possible substituents are not included.
- substituents if R stands for an alkyl, alkenyl or alkynyl include: alkyls, for example methyl, ethyl; alkoxy groups, for example methoxy, ethoxy; oxo, halogens, for example Cl, F, Br, I; aryl, for example phenyl; cycloalkyl, for example cyclohexyl; Examples of substituents, if R stands for an aryl, preferably phenyl; or if R stands for a cycloalkyl, preferably cyclohexyl; include: alkyl, preferably an alkyl of 1-3 C-atoms, for example methyl or ethyl; alkoxy, for example methoxy, ethoxy; halogens, for example Cl, F, Br, I; hydroxy; NO 2 .
- 'aldolase an enzyme with aldolase activity
- the aldolase used is 2-deoxy-D-ribose 5-phosphate aldolase (DERA, EC 4.1.2.4) or mutants hereof, more preferably DERA from Escherichia coli or mutants hereof.
- DERA 2-deoxy-D-ribose 5-phosphate aldolase
- the amino acid sequence of DERA from Escherichia coli K12 is given in SEQ ID No. 1 (SEQ ID No. 1 : wild-type DERA from Escherichia coli K12).
- the gene sequence from Escherichia coli K12 encoding this amino acid sequence is given in SEQ ID No. 2. (SEQ ID No. 2: wild-type deoC gene from Escherichia coli K12).
- the aldolase used in the process of the present invention is a DERA from Escherichia coli, Bacillus subtilis or from a Geobacillus species, or a mutant thereof.
- An example of an aldolase from a Geobacillus species or a mutant thereof is disclosed in Greenberg, W. A. et al, 2004, PNAS, 5788-5793.
- Wild-type enzymes are enzymes as can be isolated from natural sources or environmental samples; naturally occurring mutants of such enzymes, i.e. mutants as also can be isolated from natural sources or environmental samples, within the scope of this patent application are also considered to be wild-type enzymes.
- mutants for this patent application, therefore solely will intend to indicate that they have been or are being obtained from wild-type enzymes by purposive mutations of the DNA (nucleic acid) encoding said wild-type enzymes (whether by random mutagenesis, for instance with the aid of PCR or by means of UV irradiation, or by site-directed mutation, e.g. by PCR methods, saturation mutagenesis etc.
- Mutants of the aldolase may have improved properties, for example with respect to selectivity for the substrate and/or activity and/or stability and/or solvent resistance and/or pH profile and/or temperature profile.
- the mutant has at least one amino acid substitution at one or more of the positions K13, T19, Y49, N80, D84, A93, E127, A128, K146, K160, 1166, A174, M185, K196, F200, or S239 in SEQ ID No.1 , or at positions corresponding thereto, preferably at position F200 or at a position corresponding thereto, and/or a deletion of at least one amino acid at one of the positions S258 or Y259 in SEQ ID No.1 , optionally in combination with C-terminal extension, preferably by one of the fragments TTKTQLSCTKW (SEQ ID No.11 , C- terminal extension 2) and KTQLSCTKW [SEQ ID No.13, C-terminal extension 3] and/or in combination with N-terminal extension.
- TTKTQLSCTKW SEQ ID No.11 , C- terminal extension 2
- KTQLSCTKW [SEQ ID No.13, C-terminal extension 3] and/
- SEQ ID No.1 1 An example of a nucleic acid sequence encoding SEQ ID No.1 1 is given in SEQ ID No. 12 (SEQ ID No. 12, coding sequence for C-terminal extension 2).
- SEQ ID No. 13 An example of a nucleic acid sequence encoding SEQ ID No. 14 (SEQ ID No. 14, coding sequence for C-terminal extension 3).
- Amino acid residues of other aldolase sequences corresponding to positions of the amino acid residues in the wild-type amino sequence of the E. coli K12 DERA [SEQ ID No.1] can be identified by performing ClustalW version 1.82 multiple sequence alignments (http://www.ebi.ac.uk/clustalw) at default settings (matrix: Gonnet 250; GAP OPEN: 10; END GAPS: 10; GAP EXTENSION: 0.05; GAP DISTANCES: 8). Amino acid residues which are placed in the same column as an amino acid residue of the E. coli K12 wild-type DERA sequence as given in [SEQ ID No.1] in such alignments are defined to be positions corresponding to this respective amino acid residue of the E. coli K12 wild-type DERA [SEQ ID No.1].
- amino acids in the sequences and at the various positions therein are indicated by their one letter code (respectively by their three letter code) as follows:
- the mutant aldolase used has at least one of the amino acid substitutions in, or corresponding to the substitutions in SEQ ID No.1 selected from the group consisting of: a. K13 and/or K196 replaced by a positively charged amino acid, preferably by R or H; b. T19 and/or M185 replaced by another amino acid, preferably by another amino acid selected from the groups consisting of hydrophilic amino acids, in particular consisting of S, T, C, Q, and N, and/or hydrophobic amino acids, in particular consisting of V, L and I; c. Y49 replaced by an aromatic amino acid selected from the group consisting of F and W; d.
- N80 and/or 1166 and/or S239 replaced by another amino acid selected from the group of hydrophilic amino acids consisting of T, S, C, Q and N; e. D84 and/or A93 and/or E127 replaced by another, preferably smaller, amino acid selected from the group of small amino acids consisting of, in order of decreasing size, E, T, N, P, D, C, S, A, and G; f.
- A128 and/or K146 and/or K160 and/or A174 and/or F200 replaced by another amino acid selected from the group of hydrophobic amino acids consisting of I, L, M, V, F, and Y; and/or has a deletion of at least one amino acid at the positions S258 and Y259 in SEQ ID No.1 or at positions corresponding thereto, optionally in combination with C-terminal extension, preferably by one of the fragments TTKTQLSCTKW [SEQ ID No.11] and KTQLSCTKW [SEQ ID No.13] and/or in combination with N-terminal extension.
- the mutant aldolase used may be truncated by deletion of at least one amino acid residue from SEQ ID No. 1 , e.g. by deletion of S258 and/or Y259 or of positions corresponding thereto and then extended, preferably by one of the fragments TTKTQLSCTKW [SEQ ID No.11] and KTQLSCTKW [SEQ ID No.13].
- the mutant aldolase has one or more of the mutations in, or corresponding to the mutations in SEQ ID No.1 selected from the group of K13R, T19S, Y49F, N80S, D84G, A93G, E127G, A128V, K146V, K160M, I166T, A174V, M185T, M185V, K196R, F200I, F200M, F200V, S239C, ⁇ S258, ⁇ Y259, C-terminal extension by TTKTQLSCTKW [SEQ ID No.11], and C-terminal extension by KTQLSCTKW [SEQ ID No.13].
- the mutant aldolase has at least the following two mutations in, or corresponding to the two mutations in SEQ ID No. 1 selected from the group of F200I and ⁇ Y259; F200M and ⁇ Y259; F200V and ⁇ Y259; F200I and C-terminal extension by KTQLSCTKW [SEQ ID No.13]; F200M and C-terminal extension by KTQLSCTKW [SEQ ID No.13]; and F200V and C-terminal extension by KTQLSCTKW [SEQ ID No.13];
- the amino acid sequence of Escherichia coli K12 DERA, wherein the F200I position is mutated is given in SEQ ID No. 3 (SEQ ID No. 3: F200I mutant of Escherichia coli K12 DERA).
- the aldolase used in the process of the present invention is preferably the aldolase of SEQ ID No. 3.
- An example of a gene encoding the amino acid sequence of SEQ ID No. 3 is given in SEQ ID No. 4 (SEQ ID No. 4: mutated cfeoC gene encoding F200I mutant of Escherichia coli K12 DERA).
- SEQ ID No. 5 The amino acid sequence of Escherichia coli K12 DERA, wherein the F200I position is mutated and the Y259 position is deleted is given in SEQ ID No. 5 (SEQ ID No. 5: F200I/ ⁇ Y259 mutant of Escherichia coli K12 DERA).
- SEQ ID No. 6 An example of a gene encoding the amino acid sequence of SEQ ID No. 5 is given in SEQ ID No. 6 (SEQ ID No. 6: mutated deoC gene encoding F200I/ ⁇ Y259 mutant of Escherichia coli K12 DERA).
- the amino acid sequence of Escherichia coli K12 DERA, wherein the F200I position is mutated and wherein the C-terminus is extended by the amino acid sequence of SEQ ID No. 13 is given in SEQ ID No. 7 (SEQ ID No. 7: F200I and C- terminal extension 3 mutant of Escherichia coli K12 DERA).
- SEQ ID No. 7 F200I and C- terminal extension 3 mutant of Escherichia coli K12 DERA
- An example of a gene encoding the amino acid sequence of SEQ ID No. 7 is given in SEQ ID No. 8 (SEQ ID No. 8: mutated deoC gene encoding F200I and C-terminal extension 3 mutant of Escherichia coli K12 DERA).
- SEQ ID No. 8 mutated deoC gene encoding F200I and C-terminal extension 3 mutant of Escherichia coli K12 DERA.
- F200I position is mutated, the S258 and Y259 positions are deleted and wherein the C- terminus is extended by the amino acid sequence of SEQ ID No. 11 is given in SEQ ID No. 9 (SEQ ID No. 9: F200I, ⁇ S258, ⁇ Y259 and C-terminal extension 2 mutant of Escherichia coli K12 DERA).
- SEQ ID No. 9 SEQ ID No. 9: F200I, ⁇ S258, ⁇ Y259 and C-terminal extension 2 mutant of Escherichia coli K12 DERA.
- SEQ ID No. 10 SEQ ID No 10: mutated deoC gene encoding F200I, ⁇ S258, ⁇ Y259 and C-terminal extension 2 mutant of Escherichia coli K12 DERA.
- the aldolase (wild type or mutant) may be used in any form.
- the aldolase may be used - for example in the form of a dispersion, emulsion, a solution or in immobilized form - as crude enzyme, as a commercially available enzyme, as an enzyme further purified from a commercially available preparation, as an aldolase obtained from its source by a combination of known purification methods, in whole (optionally pemneabilized and/or immobilized) cells that naturally or through genetic modification possess aldolase activity, or in a lysate of cells with such activity etc. etc.
- the process of the invention may for example be performed using the reaction conditions as described in US 5,795,749, for instance in column 4, lines 1-18 or for instance using fed-batch reaction conditions as described in W. A. Greenberg et a/., PNAS, vol. 101 , pp 5788-5793, (2004).
- 2-substituted aldehydes having a low solubility in water it may be advantageous to feed those 2-substituted aldehydes to the reaction mixture.
- acetaldehyde to the reaction mixture.
- both acetaldehyde and the 2-substituted aldehyde are fed to the reaction mixture.
- the process of the invention is performed under the reaction conditions as described in WO03/006656:
- the carbonyl concentration that is the sum of the concentration of acetaldehyde, aldehyde of formula HC(O)CH 2 R 1 and the intermediate product formed in the reaction between the aldehyde and the aldehyde of formula HC(O)CH 2 R 1 , is preferably held at a value below 6 moles/l during the synthesis process. It will be clear to one skilled in the art that slightly higher concentrations for a (very) short time will have little effect. More preferably, the carbonyl concentration is chosen between 0.01 and 5 moles per liter of reaction mixture, most preferably between 0.05 and 4 moles per liter of reaction mixture.
- the reaction temperature and the pH are not critical and both are chosen as a function of the substrate.
- the reaction is carried out in the liquid phase.
- the reaction can be carried out for example at a reaction temperature between -5 and +50 0 C, preferably between 0 and 40 0 C, more preferably between 5 and 37°C; and at a pH between 5.5 and 9, preferably between 6 and 8.
- the reaction is preferably carried out at more or less constant pH, use for example being made of a buffer or of automatic titration.
- a buffer for example sodium and potassium bicarbonate, sodium and potassium phosphate, triethanolamine/HCI, bis-tris-propane/HCI and HEPES/KOH can be applied.
- a potassium or sodium bicarbonate buffer is applied, for example in a concentration between 10 and 400 mmoles/l of reaction mixture.
- the molar ratio between the total quantity of aldehyde and the total quantity of 2-substituted aldehyde is not very critical and preferably lies between 1.5:1 and 4: 1 , in particular between 1.8:1 and 2.2: 1.
- the amount of aldolase used in the process of the invention is in principle not critical. It is routine experimentation to determine the optimal concentration of enzyme for an enzymatic reaction and so the person skilled in the art can easily determine the amount of aldolase to be used.
- surfactants may be used to enhance the reaction rate.
- surfactants include anionic surfactants, for example linear alkyl sulphates, in particular sodium dodecylsulphate (SDS) or sodium hexadecylsulphate (SHS); cationic surfactants, for instance cetyl trimethylammoniumbromide (CTAB); and nonionic surfactants, for instance ethoxylated alcohols, in particular tetra(ethyleneglycol) tetradecylether.
- cosolvents may be added to help solubilize the substrate. Examples of cosolvents include dimethylsulphoxide, dimethylformamide, methanol, ethanol, isopropanol, tert- butylmethyl ether, i-butyl-methylketone.
- step a) of the process of the present invention is performed in an emulsion.
- an emulsion is defined as a ternary mixture of water, a surfactant and an oil phase, which may be an aliphatic alkane.
- Examples of aliphatic alkanes which may be used as oil phase in an emulaion include: cyclohexane, isooctane, tetradecane, hexadecane, octadecane, squalane.
- the oil-in- water (O/W) emulsion is formed by intense mixing which leads to an increased internal surface and thus facilitates mass transfer between the phases.
- Especially interesting emulsions are microemulsions that are thermodynamically stable and have a domain size in the nanometer range (see for instance Clapes et al., Chem. Eur. J. 2005, 11 , 1392-1401 and Schwuger et al., Chem. Rev. 1995, 95, 849-864.).
- the enantiomerically enriched compound of formula (1) may be oxidized to form the corresponding enantiomerically enriched compound of formula (5)
- the invention also relates to a process comprising the steps of a) reacting acetaldehyde and a substituted acetaldehyde of formula HC(O)CH 2 R, wherein R stands for an alkyl of at least 5 C-atoms, a cycloalkyl, an alkenyl, an alkynyl or for an aryl, wherein R may be substituted, in the presence of an aldolase to form the corresponding enantiomerically enriched compound of formula (1) "
- R stands for an alkyl of at least 5 C-atoms, a cycloalkyl, an alkenyl, an alkynyl or for an aryl as described above, wherein R may be substituted as described above.
- the enantiomerically enriched compound of formula (1) may be oxidized by peroxides or by other oxidizing agents.
- peroxides include hydrogen peroxide and tert-butyl hydroperoxide.
- other oxidizing agents include peracids (e.g. meta-chlorobenzoic peracid or peracetic acid), hypochlorites (e.g.
- bleach or t-butyl hypochlorite perborates, N-oxides, permanganates, chromates, for instance K 2 Cr 2 O 7 ; halogens, for instance Br 2 and Cl 2 ; chlorates, for instance KCIO 3 ; bromates, for instance KBrO 3 ; perchlorates, periodates; peroxymonosulphates, for instance K 2 HSO 5 (e.g. oxone®); peroxodisulphates, NiO 4 and air/oxygen.
- the oxidizing agent used in the process of the invention is Br 2 .
- the oxidation may be carried out in the presence of an appropriate catalyst, such as for example salts or oxides of the metals V, Ce, Mn, Ni, Fe, Cu, Os, Mo, W, Re, or Ru; or organic catalysts, for example isobutyraldehyde in the case of air/oxygen or for example tetramethylpiperidine N-oxide (TEMPO) in the case of bleach.
- an appropriate catalyst such as for example salts or oxides of the metals V, Ce, Mn, Ni, Fe, Cu, Os, Mo, W, Re, or Ru
- organic catalysts for example isobutyraldehyde in the case of air/oxygen or for example tetramethylpiperidine N-oxide (TEMPO) in the case of bleach.
- TEMPO tetramethylpiperidine N-oxide
- the oxidation by peroxides or other oxidizing agents is generally performed in a solvent, such as for instance dichloromethane, chloroform, 1 ,2- dichloroethane, methanol, ethanol, 2-propanol, acetonitrile, acetic acid, toluene, water, N-methyl-2-pyrrolidone (NMP), dimethylsulphoxide (DMSO), dimethylformamide (DMF), tetrahydrofurane (THF), or tert-butyl methyl ether (TBME).
- a solvent such as for instance dichloromethane, chloroform, 1 ,2- dichloroethane, methanol, ethanol, 2-propanol, acetonitrile, acetic acid, toluene, water, N-methyl-2-pyrrolidone (NMP), dimethylsulphoxide (DMSO), dimethylformamide (DMF), tetrahydrofurane (THF), or tert
- biphasic solvent systems consisting of an aqueous phase and an organic phase in the presence of a phase-transfer catalyst, such as for instance quarternary ammonium salt or quarternary phosphonium salt (for instance tetraalkylammonium halide, e.g. tetrabutylammonium bromide) or crown ether (for example 18-crown-6).
- a phase-transfer catalyst such as for instance quarternary ammonium salt or quarternary phosphonium salt (for instance tetraalkylammonium halide, e.g. tetrabutylammonium bromide) or crown ether (for example 18-crown-6).
- Suitable solvents comprises ionic liquids such as, for example, 1 ,3-dialkyl imidazolium salts or N-alkyl pyridinium salts of acids such as for example hexafluorophosphoric acid or tetrafluoroboric acid or trifluoromethane sulphonic acid, or with (CF 3 SO 2 ) 2 N ' as anionic counterpart.
- ionic liquids such as, for example, 1 ,3-dialkyl imidazolium salts or N-alkyl pyridinium salts of acids such as for example hexafluorophosphoric acid or tetrafluoroboric acid or trifluoromethane sulphonic acid, or with (CF 3 SO 2 ) 2 N ' as anionic counterpart.
- a reaction temperature of at least -20 0 C is applied. More preferably, a temperature of at least O 0 C is applied, even more preferably a temperature between
- the oxidation of an enantiomerically enriched compound of formula (2) is performed at a temperature lower than 150 0 C, more preferably lower than 10O 0 C, even more preferably lower than 6O 0 C, most preferably lower than 40 0 C.
- the optimal amount of oxidizing agent used for the oxidation of the enantiomerically enriched compound of formula (1 ) can be easily obtained by the person skilled in the art through routine experimentation.
- the molar amount of oxidizing agent used is at least 0.5 with respect to the amount of compound of formula (1), more preferably at least 1 with respect to the amount of compound of formula (1).
- the molar amount of oxidant used is lower than 20 with respect to the amount of compound of formula (1), more preferably lower than 10 with respect to the amount of compound of formula (1), most preferably lower than 5 with respect to the amount of compound of formula (1).
- the invention in another aspect, relates to a process comprising the steps of: a) reacting acetaldehyde and a substituted acetaldehyde of formula HC(O)CH 2 R 1 , wherein R 1 stands for H, an alkyl, a cycloalkyl, an alkenyl, an alkynyl or for an aryl, wherein R 1 may be substituted, in the presence of an aldolase to form an enantiomerically enriched compound of formula (6)
- R 1 preferably stands for an alkyl of 1 - 20 C-atoms, more preferably at least 5, and also more preferably of at most 12 C-atoms; a cycloalkyl of at least 3 and at most 7 C-atoms, more preferably of at most 6 C-atoms; an alkenyl of at most 20 C-atoms, at least 2 C-atoms, more preferably of at most 12 C-atoms; an alkynyl of at most 20 C-atoms, more preferably of at most 12 C-atoms; or for phenyl.
- R 1 stands for an alkyl, alkenyl or alkynyl chain of at least 2, 3, 4 or of at least 5 C-atoms.
- the alkyl, alkenyl or alkynyl may be branched, but is preferably linear.
- linear alkyls include ethyl, n-propyl, n- butyl, n-pentyl, n-hexyl, n-heptyl, n-octyl, n-nonyl.
- branched alkyls include i-propyl and i-butyl
- linear alkenyls include but-1-enyl, but-2-enyl, but-3- enyl, pent-1-enyl, pent-2-enyl, pent-3-enyl, pent-4-enyl etc.
- Examples of branched alkenyls include i-propenyl, i-but-1-enyl, i-but-2-enyl.
- Examples of linear alkynyls include but-1-ynyl, but-2-ynyl, but-3-ynyl, pent-1-ynyl, pent-2-ynyl, pent3-ynyl, pent-4- ynyl etc.
- R 1 stands for a linear alkyl, a linear alkenyl or for phenyl.
- C-atoms of possible substituents are not included.
- substituents if R 1 stands for an alkyl, alkenyl or alkynyl include: alkyls, for example methyl, ethyl; alkoxy groups, for example methoxy, ethoxy; oxo, halogens, for example Cl, F, Br, I; aryl, for example phenyl; cycloalkyl, for example cyclohexyl; Examples of substituents, if R 1 stands for an aryl, preferably phenyl; or if R 1 stands for a cycloalkyl, preferably cyclohexyl; include: alkyl, preferably an alkyl of 1-3 C-atoms, for example methyl or ethyl; alkoxy, for example methoxy, ethoxy; halogens, for example Cl, F, Br, I; hydroxy; NO 2 .
- the dehydration may be performed by heating the enantiomerically enriched compound of formula (7).
- the compound of formula (7) is dehydrated by heating in the presence of a dehydration catalyst, for instance an Lewis or Br ⁇ nsted acid or a base.
- the compound of formula (7) is dehydrated by heating in the presence of an acid, more preferably in the presence of a strong acid, that is an acid with a pKa of 4 or smaller.
- Br ⁇ nsted acids which may be used for dehydration include hydrochloric acid, sulphuric acid, methanesulphonic acid, oxalic acid, formic acid, acetic acid, trifluoro acetic acid, p-toluenesulphonic acid and boric acid.
- Lewis acids and other dehydration catalysts which may be used for dehydration include hydrogen sulphates, for instance KHSO 4 , anhydrous CuSO 4 , ZnCI 2 , iodine, P 2 O 5 , BF 3 -etherate, sodium acetate/acetic acid, phthalic anhydride, acetic anhydride, trifluoroacetic acid anhydride, thionyl chloride/pyridine, phosphorylchloride (POCI 3 ), mesyl chloride, tosyl chloride, carbodiimides or acidic ion exchange resins.
- hydrogen sulphates for instance KHSO 4 , anhydrous CuSO 4 , ZnCI 2 , iodine, P 2 O 5 , BF 3 -etherate, sodium acetate/acetic acid, phthalic anhydride, acetic anhydride, trifluoroacetic acid anhydride, thionyl chloride/pyridine, phosphorylchloride (PO
- the dehydration of an enantiomerically enriched compound of formula (7) may be further promoted by removal of the unsaturated reaction product, for example by distillation.
- the dehydration of an enantiomerically enriched compound of formula (7) may be further promoted by removal of the water formed during dehydration, for example by azeotropic distillation.
- the dehydration may be performed without solvent, in the neat dehydration catalyst/reagent or in an aqueous solution of the dehydration catalyst.
- the dehydration is performed in a solvent, more preferably in an organic solvent for instance in DMSO 1 DMF, alcohol, for instance methanol, ethanol, isopropanol; TBME, THF, chloroform, dichloromethane, 1 ,2-dichloroethane, acetonitrile or acetone.
- the dehydration is performed in a solvent capable of forming azeotropes with water, such as for instance toluene, benzene, xylene or ethyl acetate.
- the reaction temperature of the dehydration of an enantiomerically enriched compound of formula (1) is preferably at least O 0 C. More preferably, a temperature of at least 40°C is applied, even more preferably a temperature between 60 and 1 15°C is applied.
- the dehydration of an enantiomerically enriched compound of formula (1 ) is perfomed at a temperature lower than 200 0 C, more preferably lower than 150 0 C.
- the optimal amount of dehydration catalyst used in the dehydration of an enantiomerically enriched compound of formula (7) can be easily obtained by the person skilled in the art through routine experimentation.
- the concentration of the dehydration catalyst in the dehydration reaction mixture is preferably at least 0.05% (w/w). More preferably, it is at least 0.1% (w/w), even more preferably at least 0.5% (w/w) and most preferably at least 1% (w/w).
- the concentration of dehydration catalyst is lower than 95% (w/w), more preferably lower than 50%, even more preferably lower than 20% (w/w), most preferably lower than 10% (w/w).
- the optimal amount of dehydration catalyst used may depend on the combination of the choice of dehydration catalyst, the solvent and the substrate. For example, if para-toluenesulphonic acid is used, the concentration of dehydration catalyst concentration is typically between 1 and 5% (w/w).
- a dehydration catalyst is capable of binding 1 molar equivalent of water, it is called a stoichoimetric dehydration catalyst.
- stoichoimetric dehydration catalysts include for instance thionylchloride, acetic anhydride or mesyl chloride.
- a stoichoimetric dehydration catalyst is used for the dehydration, it is preferably used in a molar amount that is at least equivalent to the amount of compound of formula (7). More preferably, the molar ratio of stoichoimetric dehydration catalyst and the compound of formula (7) is chosen between 10:1 and 1 :1 , even more preferably between 5:1 and 1 :1 , most preferably between 2:1 and 1 :1.
- a dehydration catalyst is capable of binding more than 1 molar equivalent of water, it may be advantageous to use a molar amount that is less than the equivalent amount of compound of formula (7), for example in a molar ratio of dehydration catalyst and the compound of formula (7) of between 0.5: 1 and 1 : 1.
- An example of a dehydration catalyst capable of binding more than 1 molar equivalent of water is phosphoryl chloride.
- the enantiomerically enriched compound of formula (3) prepared in the process of the invention may be hydrogenated by a suitable hydrogenating agent to form the corresponding enantiomerically enriched compound of formula (4)
- the invention also relates to a process comprising the steps of: a) reacting acetaldehyde and a substituted acetaldehyde of formula HC(O)CH 2 R 1 , wherein R 1 stands for H, an alkyl, a cycloalkyl, an alkenyl, an alkynyl or for an aryl, wherein R 1 may be substituted, in the presence of an aldolase to form an enantiomerically enriched compound of formula (6)
- an enantiomerically enriched compound of formula (3) is known to the person skilled in the art.
- a suitable hydrogenating agent to be used in the hydrogenation of the enantiomerically enriched compound of formula (3) in principle all hydrogenating agents known to the skilled person to be applicable in the hydrogenation of a double bond may be applied.
- the enantiomerically enriched compound of formula (3) may be hydrogenated with hydrogen, with hydrides or with combinations of alkalimetals and ammonia or amines.
- aluminum hydrides for instance LiAIH 4 , LiHAI(OM
- the hydrogenation of the enantiomerically enriched compound of formula (3) is performed in the presence of a hydrogenation catalyst.
- a hydrogenation catalyst for example, the hydrogenation may be performed in the presence of a chemical hydrogenation catalyst. Alternatively the hydrogenation may be performed in the presence of a biocatalyst.
- Examples of chemical hydrogenation catalysts include metals, for example the transitions metals Ni, Pd, Pt, Co, Rh, Ir, Ru, Mo, Cu; or salts or complexes thereof.
- a widely used catalyst for the hydrogenation of enantiomerically enriched compounds of formula (3) is Pd/C (see for instance JP 10158257 A2 which describes the hydrogenation of enantiomerically enriched ⁇ -decenolactone and ⁇ - dodecenolactone using Pd/C).
- the hydrogenation of the enantiomerically enriched compound of formula (3) may be carried out in a hydrogen containing atmosphere.
- This atmosphere may for example be applied at pressures lower than 35 MPa, preferably lower than 1 MPa, more preferably between 0.1 and 0.6 MPa.
- the temperature in the hydrogenation may for example be in the range of -20 0 C to 150 0 C, preferably between 0 0 C and 100 0 C, more preferably from 20°C to 50°C.
- the hydrogenation of an enantiomerically enriched compound of formula (3) may be carried out in bulk or in a solvent, for example in an alcohol, for instance methanol, ethanol or isopropanol; ethyl acetate, THF, dioxane, diethyl ether, MTBE, water or acetic acid.
- a solvent for example in an alcohol, for instance methanol, ethanol or isopropanol; ethyl acetate, THF, dioxane, diethyl ether, MTBE, water or acetic acid.
- biocatalyst which can be used in the hydrogenation of the enantiomerically enriched compound of formula (3) are known to the skilled person. See for a specific example for instance ter Burg, N and van der Schaft, P. H., Trends in Flavour Research, 1994, p481-486, who describe the hydrogenation of 2-decen-5-olide by Baker's yeast.
- a biocatalyst for example the cells of Saccharomyces cerevisiae or other species, for example Polyporus durus, lschnoderna benzoinum, Bjerkandera adusta, Poria xantha, Pleurotus ostreatus, Saccharomyces delbrueckii, Pichia ohmeri, Pichia anomala, Pichia stipitis, Debaryomyces hansenii, Zymomonas mobilis, Zygosaccharomyces rouxii, Schawnniomyces occidentalis, Sarcina lutea or Geotrichum candidum; may be used.
- Saccharomyces cerevisiae or other species for example Polyporus durus, lschnoderna benzoinum, Bjerkandera adusta, Poria xantha, Pleurotus ostreatus, Saccharomyces delbrueckii, Pichia ohmeri
- the hydrogenation may be performed under conditions known to the person skilled in the art to be applicable to whole cell biocatalytic reactions, for example in a buffer at a pH of between 2.5 and 7, preferably at a pH of between 3 and 6.5.
- the temperature during the process may for example be in the range of 20-37 0 C 1 preferably in the range of 27-37°C.
- a cosubstrate may be added to provide the reduction equivalents such as NADH and NADPH in the whole cells used as biocatalyst.
- a cosubstrate for instance a sugar, preferably glucose, may be used.
- the cells may for example be used in free or immobilised form at concentrations of 2-30 g/L dry cell weight, preferably 5-20 g/L dry cell weight.
- the cells may be aerated.
- the enantiomerically enriched compound of formula (3) may be added to the cells following a feeding protocol, and/or additives, such as for example adsorbent resins, cyclodextrins or organic solvents, may be employed.
- enantiomeric excess e.e.
- the enantiomeric excess is > 80%, more preferably > 85%, even more preferably > 90%, in particular >95%, more in particular > 97%, even more in particular > 98%, most in particular > 99%.
- the stereochemistry of the excess of enantiomer (the (R)-enantiomer of the compound of formula (6) or the (S)-enantiomer of the compound of formula (6)) formed depends on the choice of aldolase.
- aldolases preferably catalyze the formation of the (R)-enantiomer of the compound of formula (6) and which aldolases preferably catalyze the formation of the (S)-enantiomer of the compound of formula (6).
- R 1 is as described herein.
- R 1 is as described herein.
- the invention also relates to the use of an enantiomerically enriched ⁇ -lactone obtained in a process according to the invention in food, cosmetics or as a pharma intermediate.
- E. coli TOP10 cells were freshly transformed according to the suppliers procedure with pBAD//Wyc-HisC plasmids (Invitrogen), in which the wild-type deoC gene from E. coli K12 (SEQ ID No. 2) and a mutated deoC gene from E. coli K12 (SEQ ID No. 4), containing a A598T nucleotide transversion resulting in the exchange of Phe at position 200 of the wild-type DERA amino acid sequence of E. coli K12 (SEQ ID No. 1 ) for lie at position 200 (SEQ ID No. 3), had been cloned into the ⁇ /col and EcoRI sites, respectively.
- Luria Bertani medium 10 g/l tryptone, 5 g/l yeast extract, 5 g/l NaCI containing 100 ⁇ g/ml carbenicillin
- the expression of the wild-type and mutant genes, coding for wild- type and F200I mutant DERA, respectively, were induced by addition of 0.1% (w/v) L- arabinose at cell densities of OD 620 1. After 18 hours of cultivation (OD 62 O generally around 20) the cells were harvested by centrifugation (12 minutes at 12,227x g at 5°C). The wet cells (generally more than 300 g) were washed with 0.1 M K-phosphate buffer (pH 7.0) and resuspended in volumes of a 50 mM triethanolamine buffer (pH 7.2) corresponding to three times their wet cell weight. Cells were disrupted in a nanojet homogeniser (Haskel) at 1600 bar (double run) and subsequently centrifuged (34,524x g for 60 min at 4°C) to obtain the cell-free extracts (supernatant).
- a nanojet homogeniser Heaskel
- the DERA activities measured by the DERA Activity Assay as described below were 1.6 kU/ml cfe for both wild-type and F200I mutant DERA.
- the specific DERA activity given in U/mg total protein in the cfes was determined to be 53 and 55 for wild-type and F200I mutant DERA, respectively.
- the cfes were frozen and stored at -20°C until further use.
- the formed D-glyceraldehyde 3-phosphate is subsequently converted by the auxiliary enzyme triosephosphate isomerase to dihydroxyacetone phosphate, which is reduced to L-glycerol 3-phosphate by L-glycerol 3-phosphate dehydrogenase (both auxiliary enzymes from Roche Diagnostics) with an equimolar amount of NADH as cosubstrate.
- 1 Unit of DERA activity is defined as the enzyme amount necessary to convert 1 ⁇ mol 2-deoxy-D-ribose 5-phosphate in 1 minute at room temperature (25° C) in 50 mM triethanolamine buffer pH 7.2.
- the activity assays were carried out with 10 ⁇ l cfe of a suitable dilution in 50 mM triethanolamine pH 7.2 (usually more than 1 , 000-fold for wilde-type and mutant DERA), 0.3 mM NADH and 5 mM 2-deoxy-D-ribose 5-phosphate as substrate concentration in 50 mM triethanolamine pH 7.2 and an excess of both auxiliary enzymes (more than 1.5 U/ml L-glycerol 3-phosphate dehydrogenase and more than 4.5 U/ml triosephosphate isomerase) in a total reaction volume of 1 ml.
- the assay was started by adding 10 ⁇ l of 500 mM 2-deoxy-D-ribose 5-phosphate stock solution to the reaction mixture in a 1 ml cuvette and by subsequent mixing. The consumption of NADH was followed using a PerkinElmer Lambda 20 spectrophotometer at 340 nm.
- 6-pentyl-tetrahydropyran-2,4-diol was prepared from hexanal and acetaldehyde (conversion 70%).
- ⁇ PThpD was subsequently oxidized with bromine in an aqueous solution in presence of BaCO 3 .
- the aqueous suspension was prepared by addition of two equivalents of the carbonate (39.5 g) to the aqueous solution containing the ⁇ PThpD (ca. 100 mM). After cooling it to to 0 0 C, two equivalents of bromine (200 mmol, 10.2 ml) were fed to the suspension over 2 hours. Then the mixture was allowed to warm to 25°C for 4 hours after which GC showed full conversion of the starting material. The reaction was quenched by addition of sodium thiosulphate. The carbonate salt was filtered off and the aqueous phase was extracted three times with ethyl acetate.
- Step 3 Dehydration of 4-hvdroxy-6-propyl-tetrahvdro-pyran-2-one to 6-propyl-5.6- dihvdro-pyran-2-one
- the reactions were stirred at 25°C.
- the concentration of 6-propyl- tetrahydropyran-2,4-diol (6PThpD) was determined by GC.
- the initial reaction rate for 200 kU/L DERA activity was obtained by linear regression from four samples in which the 6PThpD concentration (mM) was determined. These four samples were taken at 15, 30, 45 and 60 min after the start of the reaction and analyzed by GC. The results are shown in Table 1 below. Table 1. Comparison of activity of DERA WT of SEQ ID No. 1 with DERA mutant F200I of SEQ ID No. 3 in the synthesis of 6-propyl-tetrahydropyran-2,4-diol (6PThpD).
- Wild type DERA was tested in a microemulsion system according to Clapes et al, Chem. Eur. J. 2005, 11 , 1392-1401.
- the octanal concentration was 100 mM and the acetaldehyde concentration 200 mM in all experiments.
- a 5 M acetaldehyde stock solution in water was freshly prepared and its pH was titrated to 7.2.
- Hexadecane 150 mg
- the surfactant tetra(ethylene glycol) tetradecyl ether C14E4 100 mg
- 0.25 mmol octanal y mg
- Acetaldehyde stock solution 100 ⁇ l_
- This aqueous solution was then added dropwise to the oil phase while further mixing on the vortex mixer so that an emulsion formed.
- the enzyme was removed from the reaction mixture by precipitation with the same volume of ice-cold acetone followed by filtration.
- the enzyme solution was dosed during 0.5 h to 400 ml acetone (-20°C to 0°C). Stirring was continued for 1 hour at 0 0 C and the resulting enzyme slurry was filtered over a pre-coated dicalite filter.
- the acetone in the clear filtered solution was removed via evaporation under vacuum at 40 0 C.
- Step 3 Dehydration of 4-hvdroxy-6-ethyl-tetrahvdro-pyran-2-one to 6-ethyl-5,6-dihydro- pyran-2-one
- 6-ethyl-5,6-dihydro-pyran-2-one (300MHz,CDCI 3 ): ⁇ 6.85 (1 H,m), 5.96 (1 H,m), 4.30 (1 H,m), 2.3-1.6 (4H,m), 0.98 (3H,t).
- Step 4 Hydrogenation of 6-ethyl-5,6-dihvdro-pyran-2-one to 6-ethyl-3,4,5,6-tetrahydro- pyran-2-one
- the distilled 6-ethyl-5,6-dihydro-pyran-2-one (23.4 g) was dissolved in 120 ml toluene. 1.95 g 5% Pd/C (Degussa E196, 50% H 2 O) was added. The mixture was hydrogenated during 5 hours at 30 0 C and 10 bar H 2 .
- 6-methyl-3,4,5,6-tetrahydro-pyran-2-one (300MHz,CDCI 3 ): ⁇ 4.35 (1 H,m), 2.3- 2.6 (2H,m), 1.4-1.9 (6H,m), 1.31 (3H,d).
- 6-ethyl-3,4,5,6-tetrahydro-pyran-2-one (300MHz,CDCI 3 ): ⁇ 4.15 (1 H,m), 2.3-2.6
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