EP1532164A1 - Template-fixed peptidomimetics with antibacterial activity - Google Patents
Template-fixed peptidomimetics with antibacterial activityInfo
- Publication number
- EP1532164A1 EP1532164A1 EP02779268A EP02779268A EP1532164A1 EP 1532164 A1 EP1532164 A1 EP 1532164A1 EP 02779268 A EP02779268 A EP 02779268A EP 02779268 A EP02779268 A EP 02779268A EP 1532164 A1 EP1532164 A1 EP 1532164A1
- Authority
- EP
- European Patent Office
- Prior art keywords
- lower alkyl
- chr
- alkenyl
- alkyl
- conr
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 239000000816 peptidomimetic Substances 0.000 title abstract description 37
- 230000000844 anti-bacterial effect Effects 0.000 title description 3
- 238000000034 method Methods 0.000 claims abstract description 39
- 150000003839 salts Chemical class 0.000 claims abstract description 27
- 230000008569 process Effects 0.000 claims abstract description 14
- 239000003814 drug Substances 0.000 claims abstract description 11
- 208000015181 infectious disease Diseases 0.000 claims abstract description 10
- 125000003275 alpha amino acid group Chemical group 0.000 claims abstract description 8
- 239000000463 material Substances 0.000 claims abstract description 8
- 241000589291 Acinetobacter Species 0.000 claims abstract description 7
- 241000589517 Pseudomonas aeruginosa Species 0.000 claims abstract description 5
- 239000000645 desinfectant Substances 0.000 claims abstract description 4
- 125000001429 N-terminal alpha-amino-acid group Chemical group 0.000 claims abstract description 3
- 239000002537 cosmetic Substances 0.000 claims abstract 2
- 235000015097 nutrients Nutrition 0.000 claims abstract 2
- 125000000217 alkyl group Chemical group 0.000 claims description 1869
- 125000003342 alkenyl group Chemical group 0.000 claims description 972
- 150000001875 compounds Chemical class 0.000 claims description 83
- -1 4-(phenyl)benzyl Chemical group 0.000 claims description 77
- 125000003545 alkoxy group Chemical group 0.000 claims description 69
- 235000001014 amino acid Nutrition 0.000 claims description 69
- 125000000539 amino acid group Chemical group 0.000 claims description 66
- 239000000047 product Substances 0.000 claims description 64
- 239000002253 acid Substances 0.000 claims description 63
- 125000003118 aryl group Chemical group 0.000 claims description 53
- 150000001413 amino acids Chemical class 0.000 claims description 49
- 239000000203 mixture Substances 0.000 claims description 42
- 229910052739 hydrogen Inorganic materials 0.000 claims description 41
- 229910052731 fluorine Inorganic materials 0.000 claims description 34
- 238000005859 coupling reaction Methods 0.000 claims description 33
- 125000000524 functional group Chemical group 0.000 claims description 33
- 230000008878 coupling Effects 0.000 claims description 31
- 238000010168 coupling process Methods 0.000 claims description 31
- 229910052801 chlorine Inorganic materials 0.000 claims description 29
- 239000007787 solid Substances 0.000 claims description 25
- 230000000845 anti-microbial effect Effects 0.000 claims description 23
- 125000001072 heteroaryl group Chemical group 0.000 claims description 21
- 125000006239 protecting group Chemical group 0.000 claims description 20
- 239000000243 solution Substances 0.000 claims description 19
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 claims description 18
- 229910052794 bromium Inorganic materials 0.000 claims description 16
- CPRRHERYRRXBRZ-SRVKXCTJSA-N methyl n-[(2s)-1-[[(2s)-1-hydroxy-3-[(3s)-2-oxopyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]carbamate Chemical compound COC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](CO)C[C@@H]1CCNC1=O CPRRHERYRRXBRZ-SRVKXCTJSA-N 0.000 claims description 14
- 239000007795 chemical reaction product Substances 0.000 claims description 13
- DCXYFEDJOCDNAF-REOHCLBHSA-N L-asparagine Chemical compound OC(=O)[C@@H](N)CC(N)=O DCXYFEDJOCDNAF-REOHCLBHSA-N 0.000 claims description 10
- 125000001797 benzyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])* 0.000 claims description 10
- 239000001257 hydrogen Substances 0.000 claims description 10
- HBAQYPYDRFILMT-UHFFFAOYSA-N 8-[3-(1-cyclopropylpyrazol-4-yl)-1H-pyrazolo[4,3-d]pyrimidin-5-yl]-3-methyl-3,8-diazabicyclo[3.2.1]octan-2-one Chemical class C1(CC1)N1N=CC(=C1)C1=NNC2=C1N=C(N=C2)N1C2C(N(CC1CC2)C)=O HBAQYPYDRFILMT-UHFFFAOYSA-N 0.000 claims description 8
- 201000003883 Cystic fibrosis Diseases 0.000 claims description 8
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 claims description 8
- XJODGRWDFZVTKW-LURJTMIESA-N (2s)-4-methyl-2-(methylamino)pentanoic acid Chemical compound CN[C@H](C(O)=O)CC(C)C XJODGRWDFZVTKW-LURJTMIESA-N 0.000 claims description 7
- XUJNEKJLAYXESH-UHFFFAOYSA-N Cysteine Chemical compound SCC(N)C(O)=O XUJNEKJLAYXESH-UHFFFAOYSA-N 0.000 claims description 7
- ODKSFYDXXFIFQN-UHFFFAOYSA-N Arginine Chemical compound OC(=O)C(N)CCCNC(N)=N ODKSFYDXXFIFQN-UHFFFAOYSA-N 0.000 claims description 6
- SCIFESDRCALIIM-VIFPVBQESA-N N-methyl-L-phenylalanine Chemical compound C[NH2+][C@H](C([O-])=O)CC1=CC=CC=C1 SCIFESDRCALIIM-VIFPVBQESA-N 0.000 claims description 6
- 125000001997 phenyl group Chemical group [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 claims description 6
- 239000002775 capsule Substances 0.000 claims description 5
- 125000000959 isobutyl group Chemical group [H]C([H])([H])C([H])(C([H])([H])[H])C([H])([H])* 0.000 claims description 5
- 125000001449 isopropyl group Chemical group [H]C([H])([H])C([H])(*)C([H])([H])[H] 0.000 claims description 5
- 239000007788 liquid Substances 0.000 claims description 5
- 238000004519 manufacturing process Methods 0.000 claims description 5
- 125000004108 n-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 claims description 5
- 125000004123 n-propyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])* 0.000 claims description 5
- 239000003755 preservative agent Substances 0.000 claims description 5
- AKCRVYNORCOYQT-YFKPBYRVSA-N N-methyl-L-valine Chemical compound CN[C@@H](C(C)C)C(O)=O AKCRVYNORCOYQT-YFKPBYRVSA-N 0.000 claims description 4
- 125000000113 cyclohexyl group Chemical group [H]C1([H])C([H])([H])C([H])([H])C([H])(*)C([H])([H])C1([H])[H] 0.000 claims description 4
- 125000004210 cyclohexylmethyl group Chemical group [H]C([H])(*)C1([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C1([H])[H] 0.000 claims description 4
- 125000005982 diphenylmethyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])(*)C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 claims description 4
- 201000010099 disease Diseases 0.000 claims description 4
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 claims description 4
- 125000000956 methoxy group Chemical group [H]C([H])([H])O* 0.000 claims description 4
- 125000003136 n-heptyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 claims description 4
- 125000001280 n-hexyl group Chemical group C(CCCCC)* 0.000 claims description 4
- 239000007858 starting material Substances 0.000 claims description 4
- 239000000725 suspension Substances 0.000 claims description 4
- 239000003826 tablet Substances 0.000 claims description 4
- 125000000729 N-terminal amino-acid group Chemical group 0.000 claims description 3
- 229910052799 carbon Inorganic materials 0.000 claims description 3
- 239000000499 gel Substances 0.000 claims description 3
- 239000007924 injection Substances 0.000 claims description 3
- 238000002347 injection Methods 0.000 claims description 3
- 150000007649 L alpha amino acids Chemical class 0.000 claims description 2
- 239000006071 cream Substances 0.000 claims description 2
- 239000008298 dragée Substances 0.000 claims description 2
- 230000004048 modification Effects 0.000 claims description 2
- 238000012986 modification Methods 0.000 claims description 2
- 239000002674 ointment Substances 0.000 claims description 2
- 230000002685 pulmonary effect Effects 0.000 claims description 2
- 239000007921 spray Substances 0.000 claims description 2
- 239000006188 syrup Substances 0.000 claims description 2
- 235000020357 syrup Nutrition 0.000 claims description 2
- 230000000699 topical effect Effects 0.000 claims description 2
- 206010052428 Wound Diseases 0.000 claims 2
- 208000027418 Wounds and injury Diseases 0.000 claims 2
- 125000002023 trifluoromethyl group Chemical group FC(F)(F)* 0.000 claims 2
- 208000020084 Bone disease Diseases 0.000 claims 1
- 208000004020 Brain Abscess Diseases 0.000 claims 1
- 208000034598 Caecitis Diseases 0.000 claims 1
- 208000024172 Cardiovascular disease Diseases 0.000 claims 1
- 206010012735 Diarrhoea Diseases 0.000 claims 1
- 206010014561 Emphysema Diseases 0.000 claims 1
- 208000018522 Gastrointestinal disease Diseases 0.000 claims 1
- 241000764238 Isis Species 0.000 claims 1
- 201000009906 Meningitis Diseases 0.000 claims 1
- 206010028980 Neoplasm Diseases 0.000 claims 1
- 206010031252 Osteomyelitis Diseases 0.000 claims 1
- 208000005141 Otitis Diseases 0.000 claims 1
- 208000016247 Soft tissue disease Diseases 0.000 claims 1
- 208000002847 Surgical Wound Diseases 0.000 claims 1
- 208000004387 Typhlitis Diseases 0.000 claims 1
- 239000013543 active substance Substances 0.000 claims 1
- 125000005079 alkoxycarbonylmethyl group Chemical group 0.000 claims 1
- 208000006673 asthma Diseases 0.000 claims 1
- 201000011510 cancer Diseases 0.000 claims 1
- 125000002057 carboxymethyl group Chemical group [H]OC(=O)C([H])([H])[*] 0.000 claims 1
- 208000015114 central nervous system disease Diseases 0.000 claims 1
- 208000032625 disorder of ear Diseases 0.000 claims 1
- 208000019258 ear infection Diseases 0.000 claims 1
- 206010014801 endophthalmitis Diseases 0.000 claims 1
- 201000010063 epididymitis Diseases 0.000 claims 1
- 208000030533 eye disease Diseases 0.000 claims 1
- 125000004435 hydrogen atom Chemical group [H]* 0.000 claims 1
- 206010023332 keratitis Diseases 0.000 claims 1
- 230000002956 necrotizing effect Effects 0.000 claims 1
- 208000008494 pericarditis Diseases 0.000 claims 1
- 239000008194 pharmaceutical composition Substances 0.000 claims 1
- 239000011505 plaster Substances 0.000 claims 1
- WGYKZJWCGVVSQN-UHFFFAOYSA-N propylamine Chemical group CCCN WGYKZJWCGVVSQN-UHFFFAOYSA-N 0.000 claims 1
- 201000007094 prostatitis Diseases 0.000 claims 1
- 208000023504 respiratory system disease Diseases 0.000 claims 1
- 208000017520 skin disease Diseases 0.000 claims 1
- 239000002002 slurry Substances 0.000 claims 1
- 239000000829 suppository Substances 0.000 claims 1
- 230000000472 traumatic effect Effects 0.000 claims 1
- 244000005700 microbiome Species 0.000 abstract description 3
- 108010077112 prolyl-proline Proteins 0.000 abstract 1
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 130
- ZMXDDKWLCZADIW-UHFFFAOYSA-N N,N-Dimethylformamide Chemical compound CN(C)C=O ZMXDDKWLCZADIW-UHFFFAOYSA-N 0.000 description 126
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 96
- 239000002904 solvent Substances 0.000 description 94
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 92
- WYURNTSHIVDZCO-UHFFFAOYSA-N Tetrahydrofuran Chemical compound C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 description 78
- ZMANZCXQSJIPKH-UHFFFAOYSA-N Triethylamine Chemical compound CCN(CC)CC ZMANZCXQSJIPKH-UHFFFAOYSA-N 0.000 description 60
- 108090000765 processed proteins & peptides Proteins 0.000 description 60
- 229910001868 water Inorganic materials 0.000 description 58
- RYHBNJHYFVUHQT-UHFFFAOYSA-N 1,4-Dioxane Chemical compound C1COCCO1 RYHBNJHYFVUHQT-UHFFFAOYSA-N 0.000 description 54
- 229940024606 amino acid Drugs 0.000 description 54
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 52
- 239000003153 chemical reaction reagent Substances 0.000 description 39
- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 39
- 239000002585 base Substances 0.000 description 35
- KDLHZDBZIXYQEI-UHFFFAOYSA-N palladium Substances [Pd] KDLHZDBZIXYQEI-UHFFFAOYSA-N 0.000 description 33
- 238000006243 chemical reaction Methods 0.000 description 32
- 102000004196 processed proteins & peptides Human genes 0.000 description 30
- 229910000104 sodium hydride Inorganic materials 0.000 description 28
- HEMHJVSKTPXQMS-UHFFFAOYSA-M Sodium hydroxide Chemical compound [OH-].[Na+] HEMHJVSKTPXQMS-UHFFFAOYSA-M 0.000 description 27
- 230000015572 biosynthetic process Effects 0.000 description 27
- CDBYLPFSWZWCQE-UHFFFAOYSA-L Sodium Carbonate Chemical compound [Na+].[Na+].[O-]C([O-])=O CDBYLPFSWZWCQE-UHFFFAOYSA-L 0.000 description 26
- 229910000029 sodium carbonate Inorganic materials 0.000 description 26
- 238000003786 synthesis reaction Methods 0.000 description 26
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 24
- VEXZGXHMUGYJMC-UHFFFAOYSA-N Hydrochloric acid Chemical compound Cl VEXZGXHMUGYJMC-UHFFFAOYSA-N 0.000 description 24
- 125000001424 substituent group Chemical group 0.000 description 24
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 24
- IAZDPXIOMUYVGZ-UHFFFAOYSA-N Dimethylsulphoxide Chemical compound CS(C)=O IAZDPXIOMUYVGZ-UHFFFAOYSA-N 0.000 description 23
- COLNVLDHVKWLRT-QMMMGPOBSA-N L-phenylalanine Chemical compound OC(=O)[C@@H](N)CC1=CC=CC=C1 COLNVLDHVKWLRT-QMMMGPOBSA-N 0.000 description 20
- 238000007429 general method Methods 0.000 description 19
- 229960000583 acetic acid Drugs 0.000 description 17
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- KDXKERNSBIXSRK-YFKPBYRVSA-N L-lysine Chemical compound NCCCC[C@H](N)C(O)=O KDXKERNSBIXSRK-YFKPBYRVSA-N 0.000 description 15
- 230000007017 scission Effects 0.000 description 15
- 230000002378 acidificating effect Effects 0.000 description 14
- 125000005647 linker group Chemical group 0.000 description 14
- 229920005989 resin Polymers 0.000 description 14
- 239000011347 resin Substances 0.000 description 14
- 125000000174 L-prolyl group Chemical group [H]N1C([H])([H])C([H])([H])C([H])([H])[C@@]1([H])C(*)=O 0.000 description 13
- AYFVYJQAPQTCCC-GBXIJSLDSA-N L-threonine Chemical compound C[C@@H](O)[C@H](N)C(O)=O AYFVYJQAPQTCCC-GBXIJSLDSA-N 0.000 description 13
- 239000003054 catalyst Substances 0.000 description 13
- VEXZGXHMUGYJMC-UHFFFAOYSA-M Chloride anion Chemical compound [Cl-] VEXZGXHMUGYJMC-UHFFFAOYSA-M 0.000 description 12
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- 125000003277 amino group Chemical group 0.000 description 12
- IJOOHPMOJXWVHK-UHFFFAOYSA-N chlorotrimethylsilane Chemical compound C[Si](C)(C)Cl IJOOHPMOJXWVHK-UHFFFAOYSA-N 0.000 description 12
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- AHLPHDHHMVZTML-UHFFFAOYSA-N Orn-delta-NH2 Natural products NCCCC(N)C(O)=O AHLPHDHHMVZTML-UHFFFAOYSA-N 0.000 description 5
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- TWXDDNPPQUTEOV-FVGYRXGTSA-N methamphetamine hydrochloride Chemical compound Cl.CN[C@@H](C)CC1=CC=CC=C1 TWXDDNPPQUTEOV-FVGYRXGTSA-N 0.000 description 1
- VNWKTOKETHGBQD-UHFFFAOYSA-N methane Natural products C VNWKTOKETHGBQD-UHFFFAOYSA-N 0.000 description 1
- QARBMVPHQWIHKH-UHFFFAOYSA-N methanesulfonyl chloride Chemical compound CS(Cl)(=O)=O QARBMVPHQWIHKH-UHFFFAOYSA-N 0.000 description 1
- 229930182817 methionine Natural products 0.000 description 1
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- OFYAYGJCPXRNBL-LBPRGKRZSA-N naphthalen-2-yl-3-alanine Chemical compound C1=CC=C2C(C[C@H](N)C(O)=O)=CC=CC2=C1 OFYAYGJCPXRNBL-LBPRGKRZSA-N 0.000 description 1
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- 238000006386 neutralization reaction Methods 0.000 description 1
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- URUUZIAJVSGYRC-UHFFFAOYSA-N oxan-3-one Chemical class O=C1CCCOC1 URUUZIAJVSGYRC-UHFFFAOYSA-N 0.000 description 1
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- TWNQGVIAIRXVLR-UHFFFAOYSA-N oxo(oxoalumanyloxy)alumane Chemical compound O=[Al]O[Al]=O TWNQGVIAIRXVLR-UHFFFAOYSA-N 0.000 description 1
- 244000052769 pathogen Species 0.000 description 1
- 230000008823 permeabilization Effects 0.000 description 1
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- COLNVLDHVKWLRT-UHFFFAOYSA-N phenylalanine Natural products OC(=O)C(N)CC1=CC=CC=C1 COLNVLDHVKWLRT-UHFFFAOYSA-N 0.000 description 1
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- 239000006187 pill Substances 0.000 description 1
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- 229920002401 polyacrylamide Polymers 0.000 description 1
- 229920001223 polyethylene glycol Polymers 0.000 description 1
- 229920000642 polymer Polymers 0.000 description 1
- 229920000137 polyphosphoric acid Polymers 0.000 description 1
- 229920005990 polystyrene resin Polymers 0.000 description 1
- 235000013855 polyvinylpyrrolidone Nutrition 0.000 description 1
- 229920000036 polyvinylpyrrolidone Polymers 0.000 description 1
- LPNYRYFBWFDTMA-UHFFFAOYSA-N potassium tert-butoxide Chemical compound [K+].CC(C)(C)[O-] LPNYRYFBWFDTMA-UHFFFAOYSA-N 0.000 description 1
- 229920001592 potato starch Polymers 0.000 description 1
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- 238000002953 preparative HPLC Methods 0.000 description 1
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- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 description 1
- REQCZEXYDRLIBE-UHFFFAOYSA-N procainamide Chemical compound CCN(CC)CCNC(=O)C1=CC=C(N)C=C1 REQCZEXYDRLIBE-UHFFFAOYSA-N 0.000 description 1
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- WTJDAUWOECZENF-OZWITMHCSA-N smap-29 Chemical compound NC(=O)[C@H](C)NC(=O)[C@H]([C@@H](C)CC)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H]([C@@H](C)CC)NC(=O)[C@H]([C@@H](C)CC)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C(C)C)NC(=O)[C@H]([C@@H](C)O)NC(=O)[C@@H]1CCCN1C(=O)CNC(=O)[C@@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@@H](NC(=O)CNC(=O)[C@H](CC=1NC=NC=1)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCNC(N)=N)NC(=O)CNC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](CC(C)C)NC(=O)CNC(=O)[C@@H](N)CCCNC(N)=N)[C@@H](C)CC)C(C)C)CC1=CC=C(O)C=C1 WTJDAUWOECZENF-OZWITMHCSA-N 0.000 description 1
- 239000011734 sodium Substances 0.000 description 1
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- BNWCETAHAJSBFG-UHFFFAOYSA-N tert-butyl 2-bromoacetate Chemical compound CC(C)(C)OC(=O)CBr BNWCETAHAJSBFG-UHFFFAOYSA-N 0.000 description 1
- DKACXUFSLUYRFU-UHFFFAOYSA-N tert-butyl n-aminocarbamate Chemical compound CC(C)(C)OC(=O)NN DKACXUFSLUYRFU-UHFFFAOYSA-N 0.000 description 1
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- 125000002221 trityl group Chemical group [H]C1=C([H])C([H])=C([H])C([H])=C1C([*])(C1=C(C(=C(C(=C1[H])[H])[H])[H])[H])C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 1
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Classifications
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- C07K5/04—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
- C07K5/06—Dipeptides
- C07K5/06139—Dipeptides with the first amino acid being heterocyclic
- C07K5/06165—Dipeptides with the first amino acid being heterocyclic and Pro-amino acid; Derivatives thereof
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-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K1/00—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length
- C07K1/04—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length on carriers
- C07K1/047—Simultaneous synthesis of different peptide species; Peptide libraries
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/64—Cyclic peptides containing only normal peptide links
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- A—HUMAN NECESSITIES
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- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A50/00—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
- Y02A50/30—Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change
Definitions
- the present invention provides template-fixed ⁇ -ha ⁇ rp ⁇ n peptidomimetics incorporating a template- fixed chain of 12 ⁇ -amino acid residues which, depending on their positions in the chain, are Gly or Pro, or of certain types, as defined herein below These template-fixed ⁇ -hairpin mimetics have a selective antimicrobial activity
- the present invention provides efficient synthetic processes by which these compounds can, if desired, be made in parallel library-format
- These ⁇ - hairpin peptidomimetics show improved efficacy, bioavailability, half-life and most importantly a significantly enhanced ratio between antibacterial activity on the one hand, and hemolysis of red blood cells on the other
- catiomc peptides such as protegrin 1 (A Aumelas, M Mangoni, C Roumestand, L Chiche, E Despaux, G Grassy, B Calas, A Chavanieu, A Eur J Biochem 1996, 237, 575-583, R L Fahrner, T Dieckmann, S S L Harwig, R I Lehrer, D Eisenberg, J Feigon, J Chem Biol 1996, 3, 543-550) and tachyplesin I (K Kawano, T Yoneya, T M ⁇ yata, K Yoshikawa, F Tokunaga, Y Terada, S J Iwanaga, S J Biol Chem 1990
- a key issue in the design of new selective catiomc antimicrobial peptides are bioavailability, stability and reduced haemolytic activity
- the naturally occurring protegrms and tachyplesins exert a significant hemolytic activity against human red blood cells This is also the case for protegrin analogues such as IB367 (J Chen, T J Falla, H J Liu, M A Hurst, C A Fujn, D A Mosca, J R Embree, D J Loury, P A Radel, C C Chang, L Gu, J C Fiddes, Biopolymers 2000, 55, 88-98, C Chang, L Gu, J Chen, US-Pat 5,916,872, 1999)
- This high hemolytic activity essentially obviates its use in vivo, and represents a serious disadvantage in clinical applications
- the antibiotic activity of analogues often decreases significantly with increasing salt concentration, such that under in vivo conditions (ca 100-150 mM NaCl) the antimicrobial activity may be severely reduced
- protegrin 1 exhibits potent and similar activity against gram-positive and gram-negative bacteria as well as fungi in both low- and high-salt assays This broad antimicrobial activity combined with a rapid mode of action, and their ability to kill bacteria resistant to other classes of antibiotics, make them attractive targets for development of clinically useful antibiotics
- the activity against gram- positive bacteria is typically higher than against gram-negative bacteria
- protegrin 1 also exhibits a high hemolytic activity against human red blood cells, and hence a low selectivity towards microbial cells Oriented CD experiments (W T Heller, A J Waring, R I Lehrer, H W Huang, Biochemistry 1998, 37, 17331-17338) indicate that protegrin 1 may exist in two different states as it interacts with membranes, and these states are strongly influenced by lipid composition
- Studies of cyclic protegrin analogues J -P Tam, C Wu, J -L Yang, Eur J Biochem 2000, 267, 3289-3300 have revealed, that an increase in the conformational rigidity
- Protegrin I is an 18 residues linear peptide, with an amidated carboxyl terminus and two disulfide bridges Tachyplesin I contains 17 residues, also has an amidated carboxyl terminus and contains two disulfide bridges
- Recently described backbone-cyclic protegrin and tachyplesin analogues typically contain 18 residues and up to three disulfide bridges (J P Tam, C Wu, J -L Yang, Eur J Biochem 2000, 267, 3289-3300, J P Tam, Y -A Lu, J -L Yang, Biochemistry 2000, 39, 7159-7169, N Sitaram, R Nagara ⁇ j, -3.oc .ew Biophys Res Comm 2000, 267, 783-790)
- C ⁇ thehcidin a 37-res ⁇ due linear helical-type catiomc peptide, and analogues are currently under investigation as inhaled therapeutic agents for cystic fibrosis (CF) lung disease
- CF cystic fibrosis
- Over 80% of CF patients become chronically infected with pseudomonas aeruginosa C A Demko, P J Biard, P B Davies. Clin Epidemiol 1995, 45, 1041-1049, E M Kerem, R Gold, H Lev ⁇ nson, J Pediatr 1990, 776, 714-719)
- ⁇ -hairpm peptidomimetics of the present invention are compounds of the general formula
- R 1 is H; lower alkyl; or aryl-lower alkyl
- R 2 is H; alkyl; alkenyl; -(CH 2 ) m (CHR 6 ') s OR 55 ; -(CH 2 ) m (CHR 61 ) s SR 56 ;
- R 3 is H; alkyl; alkenyl; -(CH 2 ) m (CHR 6l ) s OR 55 ; -(CH 2 ) m (CHR 6l ) s SR 56 ;
- R 4 is H; alkyl; alkenyl; -(CH 2 ) m (CHR 6 , ) s OR 55 ; -(CH 2 ) m (CHR 6 ') s SR 56 ; -(CH 2 ) m (CHR 61 ) s NR 33 R 34 ; -(CH 2 ) m (CHR 6l ) s OCONR 33 R 75 ; -(CH 2 ) m (CHR 6, ) s NR 20 CONR 33 R 82 ;
- R 5 is alkyl; alkenyl; -(CH 2 ) 0 (CHR 61 ) s OR 55 ; -(CH 2 ) 0 (CHR 61 ) S SR 56 ; -(CH 2 ) 0 (CHR 6 ') S NR 33 R 34 ; -(CH2) o (CHR 61 ) s OCONR 33 R 75 ; -(CH 2 ) o (CHR 61 ) NR 20 CONR 33 R 82
- R 7 is alkyl; alkenyl; -(CH 2 ) q (CHR 6l ) s OR 55 ; -(CH 2 ) q (CHR 61 ) s NR 33 R 34 ; -(CH 2 ) q (CHR 6 ' ) s OCONR 33 R 75 ; -(CH 2 ) q (CHR 6 ' ) S NR 20 CONR 33 R 82 ; -(CH 2 ) r (CHR 6, )
- R 8 is H; Cl; F; CF ; N0 2 ; lower alkyl; lower alkenyl; aryl; aryl-lower alkyl; -(CH 2 ) o (CHR 6 ') s 0R 55 ; -(CH 2 ) 0 (CHR 61 ) S SR 56 ; -(CH 2 ) 0 (CHR 6 ')NR 33 R 34 ; -(CH 2 ) 0 (CHR 6 ' ) s OCONR 33 R 75 ; -(CH 2 ) 0 (CHR 6 ' ) S NR 20 CONR 33 R 82 ; -(CH 2 ) o (CHR 61 ) s COOR 57 ; -(CH 2 ) 0 (CHR 6 ') S S0 2 R 62 ; or -(CH 2 ) r (CHR 6l ) s C 6 H 4 R 8 ; R 8 is H; Cl; F; CF
- R 9 is alkyl; alkenyl; -(CH 2 ) 0 (CHR 61 ) s OR 55 ; -(CH 2 ) 0 (CHR 6 ') S SR 56 ; -(CH 2 ) 0 (CHR 61 ) S NR 33 R 34 ; -(CH 2 ) o (CHR 6, ) s OCONR 33 R 75 ; -(CH 2 ) o (CHR 61 ) NR 20 CONR 33 R 82 ; -(CH 2 ) 0 (CHR 6 ' ) s COOR 57 ; -(CH 2 ) 0 (CHR 6 ' ) s CONR 58 R 59 ; -(CH 2 ) 0 (CHR 61 ) S PO
- R'° is alkyl; alkenyl; -(CH 2 ) 0 (CHR 6l ) s OR 55 ; -(CH 2 ) 0 (CHR 6 ') S SR 56 ; -(CH 2 ) 0 (CHR 6I ) S NR 33 R 34 ; -(CH 2 ) 0 (CHR 61 ) s OCONR 33 R 75 ; -(CH 2 ) 0 (CHR 6 ' ) S NR 20 CONR 33 R 82 ; -(CH 2 ) o (CHR 6 ') s COOR 57 ; -(CH 2 ) o (CHR 6l )-CONR 58 R S9 ; -(CH 2 ) o (CHR 6l ) s PO(OR 60 ) 2 ; -(CH 2 ) 0 (CHR 6 ') S S0 2 R 62 ; or -(CH 2 ) 0 (CHR 6I
- R 14 is H, alkyl, alkenyl, -(CH 2 ) m (CHR 61 ) s OR 55 , -(CH 2 ) m (CHR 6l ) 5 NR 33 R 34 , -(CH 2 ) m (CHR 6 ') s OCONR 33 R 75 , -(CH 2 ) m (CHR 61 ) s NR 20 CONR 33 R 82 , -(CH2) q (C
- R 16 is alkyl, alkenyl, -(CH 2 ) 0 (CHR 6 ') s OR 55 , -(CH 2 ) 0 (CHR 61 ) S SR 56 , -(CH 2 ) 0 (CHR 6 ') S NR 33 R 34 , -(CH 2 ) 0 (CHR 6 ' ) s OCONR 33 R 75 , -(CH 2 ) 0 (CHR 61 ) S NR
- R 17 is alkyl, alkenyl, -(CH 2 ) q (CHR 6l ) s OR 55 , -(CH 2 ) q (CHR 6l ) s SR 56 , -(CH 2 ) q (CHR 6 ') s NR 33 R 34 , -(CH 2 ) q (CHR 61 ) s OCONR 33 R 75 , -(CH 2 ) q (CHR 61 ) NR 20 CONR 33 R 82 , -(CH 2 ) q (CHR 6 ' ) s COOR 57 , -(CH 2 ) q (CHR 6 ' ) s CONR 58 R 59 , -(CH 2 ) q (CHR 6 I ) 5 S0 2 R 62 , or -(CH 2 ) 0 (CHR 61 ) S C 6 H 4 R 8 , R 17 is alkyl, alkenyl, -(
- R 18 is alkyl, alkenyl, -(CH 2 ) p (CHR 61 ) s OR 55 , -(CH 2 ) P (CHR 51 ) 5 SR 56 , -(CH 2 ) P (CHR 6, ) S NR 33 R 34 , -(CH 2 ) p (CHR 6, ) s OCONR 33 R 75 , -(CH 2 ) P (CHR 6, ) S NR 20 CONR 33 R 82 , -(CH 2 )p(CHR 6 l ) 5 COOR 57 , -(CH 2 ) p (CHR 61 ) s CONR 58 R 59 , -(CH 2 ) P (CHR 6 ') S PO(OR 60 ) 2) -(CH 2 ) p (CHR 61 ) s S0 2 R 62 , or -(CH 2 ) 0 (CHR 6 ') S C 6 H 4 R 8 , R 19
- R 20 is H, alkyl, alkenyl, or aryl-lower alkyl
- R 2 ' is H, alkyl, alkenyl, -(CH 2 ) 0 (CHR 6l ) s OR 55 , -(CH 2 ) 0 (CHR 6I ) S SR 56 , -(CH 2 ) sanction(CHR 6 ') S NR 33 R 34 , -(CH 2 ) 0 (CHR 6 ' ) 5 OCONR 33 R 75 , -(CH 2 ) 0 (CHR 6 ' ) S NR 20 CONR 33 R 82 , -(CH 2 ) 0 (CHR 61 ) s COOR 57 , -(CH 2 ) 0 (CHR 6 ') s CONR 58 R 59 , -(CH 2 ) o (CHR 6 ') s PO(OR 60 ) 2 , -(CH 2 ) 0 (CHR 61 ) S S0 2 R 62 , or -(CH 2 ) 0 (CHR
- R 22 is H, alkyl, alkenyl, -(CH 2 ) 0 (CHR 6 ') S OR 55 , -(CH 2 ) 0 (CHR 61 ) S SR 56 , -(CH 2 ) 0 (CHR 6 ') S NR 33 R 34 , -(CH 2 ) 0 (CHR 6 ' ) s OCONR 33 R 7S , -(CH 2 ) 0 (CHR 6 ' ) S NR 20 CONR 33 R 82 , -(CH2)o(CHR 6 ') s COOR 57 , -(CH 2 ) o (CHR 6l ) 3 CONR 58 R 59 , -(CH 2 ) solicit(CHR 6l ) 3 PO(OR 60 ) 2 , -(CH 2 )o(CHR 6l ) s S0 2 R 62 , or -(CH 2 ) 0 (CHR 61 ) S C
- R 24 is alkyl, alkenyl, -(CH 2 ) 0 (CHR 6l ) s OR 55 , -(CH 2 ) o (CHR 6l ) s SR 56 , -(CH 2 ) 0 (CHR 6I ) S NR 33 R 34 , -(CH 2 ) 0 (CHR 6, ) s OCONR 33 R 75 , -(CH 2 ) o (CHR 61 ) NR 20 CONR 33 R 82 , -(CH 2 ) 0 (CHR 6I ) S COOR 57 , -(CH 2 ) 0 (CHR 6l ) s CONR 58 R 59 , -(CH 2 ) o (CHR 6 ') s PO(
- R 25 is H, alkyl, alkenyl, -(CH 2 ) m (CHR 6 l ) s OR 55 , -(CH 2 ) m (CHR 6 ') s SR 56 , -(CH 2 ) m (CHR 6l ) s NR 33 R 34 , -(CH 2 ) m (CHR 6l ) s OCONR 33 R 75 , -(CH2) m (CHR 61 ) s NR 20 CONR 33 R 82 , -(CH 2 ) o (CHR ⁇ ') s COOR 57 , -(CH 2 ) o (CHR 61 ) s CONR 58 R 59 , -(CH 2 ) o (CHR 61 ) s PO(OR 60 ) 2 , -(CH 2 ) o (CHR 61 ) s S0 2 R 62 , or -(CH 2 ) 0 (
- R 26 is H, alkyl, alkenyl, -(CH 2 ) m (CHR 61 ) s OR 55 , -(CH 2 ) m (CHR 61 ) s SR 56 , -(CH 2 ) m (CHR 61 ) s NR 33 R 34 , -(CH 2 ) m (CHR 61 ) s OCONR 33 R 75 ,
- R 25 and R 26 taken together can form -(CH 2 ) 2 6 -, -(CH 2 ) r O(CH 2 ) r -, -(CH 2 ) r S(CH 2 ) r -, or
- R 27 is H, alkyl, alkenyl, -(CH 2 ) 0 (CHR 6 ') s OR 55 , -(CH 2 ) 0 (CHR 6I ) S SR 56 , -(CH 2 ) 0 (CHR 6 ') S NR 33 R 34 , -(CH 2 ) 0 (CHR 61 ) s CO0R 57 > -(CH 2 ) o (CHR 6 ') s C0NR 58 R 59 , -(CH 2 ) o (CHR 61 ) s 0C0NR 33 R 75 , -(CH 2 )o(CHR 6l )3NR 20 CONR 33 R 82 , -(CH 2 ) 0 (CHR 6 I ) S PO(OR 60 ) 2 ,
- R 28 is alkyl, alkenyl, -(CH 2 ) 0 (CHR 61 ) s -OR 55 , -(CH 2 ) 0 (CHR 61 ) S SR 56 , -(CH 2 ) 0 (CHR 6I ) S NR 33 R 34 , -(CH 2 ) 0 (CHR 61 ) s OCONR 33 R 75 , -(CH 2 ) o (CHR 61 ) NR 20 CONR 33 R 82 , -(CH 2 ) 0 (CHR 61 ) S COOR 57 , -(CH 2 ) 0 (CHR ⁇ ') s CONR 58 R 59 , -(CH 2 ) 0 (CHR 61 )
- R 29 is alkyl, alkenyl, -(CH 2 ) 0 (CHR 6l )-OR 55 , -(CH 2 ) 0 (CHR 6I ) S SR 56 , -(CH 2 ) o (CHR 6l ) s NR 33 R 34 , -(CH 2 ) o (CHR 61 ) s OCONR 33 R 75 , -(CH 2 ) o (CHR 6l ) s NR 20 CONR 33 R 82 , -(CH 2 ) 0 (CHR 6l ) s COOR 57 , -(CH 2 ) o (CHR 6l ) s CONR 58 R 59 , -(CH 2 ) o (CHR 6l ) s PO(OR 60 ) 2 , -(CH 2 ) 0 (CHR 61 ) S S0 2 R 62 , or -(CH 2 ) 0 (CHR 6, )
- R 31 is H, alkyl, alkenyl, -(CH 2 ) p (CHR ) 5 OR 55 , -(CH 2 ) P (CHR 6 ') S NR 33 R 34 , -(CH 2 )p(CHR 6 ') s OCONR 33 R 75 , -(CH 2 ) p (CHR 6l )-NR 20 CONR 33 R 82 , -(CH 2 ) o (CHR 6 ') s COOR 57 ; -(CH 2 ) o (CHR 6l )-CONR 58 R 59 ; -(CH 2 ) o (CHR 61 ) s PO(OR 60 ) 2 ; -(CH 2 ) 0 (CHR 61 )-S0 2 R 62 ; or -(CH 2 ) 0 (CHR 61 ) S C 6 H 4 R 8 ; R 32 is H; lower alkyl; or aryl-lower al
- R 33 is H; alkyl, alkenyl; -(CH 2 ) m (CHR 61 ) s OR 55 ; -(CH 2 ) m (CHR 6 ') s NR 34 R 63 ; -(CH 2 ) m (CHR 6 ') s OCONR 75 R 82 ; -(CH 2 ) m (CHR 6, ) s NR 20 CONR 78 R 82 ;
- R 34 is H; lower alkyl; aryl, or aryl-lower alkyl;
- R 33 and R 34 taken together can form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or -(CH 2 ) 2 NR 57 (CH 2 ) 2 -;
- R 35 is H; alkyl; alkenyl; -(CH 2 ) m (CHR 6 ') s 0R 55 ; -(CH 2 ) m (CHR 6l ) 5 NR 33 R 34 ; -(CH 2 ) worship,(CHR 6 ' ) s 0C0NR 33 R 75 ; -(CH 2 ) m (CHR 6 ' ) S NR 20 CONR 33 R 82 ; -(CH2)p(CHR 6 ') s COOR 57 ; -(CH2) p (CHR 61 ) s CONR 58 R 59 ; -(CH 2 ) p (CHR 6 ') s PO(OR 60 )2; -(CH 2 ) P (CHR 61 ) s S0 2 R 62 ; or -(CH 2 ) P (CHR 6, ) S H.R 8 ; R 36 is H, alkyl; alkenyl;
- R 39 is H; alkyl; alkenyl; or aryl-lower alkyl; R is H; alkyl; alkenyl; or aryl-lower alkyl;
- R 4 ' is H; F; Br; Cl; N0 2 ; CF 3 ; alkyl; alkenyl; -(CH 2 ) P (CHR 61 ) S 0R 55 ; -(CH 2 ) P (CHR 6 ') S NR 33 R 34 ; -(CH 2 ) p (CHR 6 l ) s OCONR 33 R 75 ; -(CH 2 ) P (CHR 61 ) S NR 20 CONR 33 R 82 ;
- R 42 is H; F; Br; Cl; N0 2 ; CF 3 ; alkyl; alkenyl; -(CH 2 ) p (CHR 6, ) s OR 55 ; -(CH 2 ) P (CHR 6 ') S NR 33 R 34 ; -(CH 2 ) P (CHR 6 ' ) s OCONR 33 R 75 ; -(CH 2 ) P (CHR 6 ' ) S NR 20 CONR 33 R
- R 43 is H; alkyl; alkenyl; -(CH 2 ) m (CHR 6l ) s OR 55 ; -(CH 2 ), n (CHR 6l ) s NR 33 R 34 ; -(CH 2 ) m (CHR 6 ' ) s OCONR 33 R 75 ; -(CH 2 ) m (CHR 61 ) S NR 20 CONR 33 R 82 ; -(CH2)o(CHR 6l ) s COOR 57 ; -(CH2) o (CHR 6l ) s CONR 58 R 59 ; -(CH 2 ) o (CHR 6l ) s PO(OR 60 )2; -(CH 2 ) 0 (CHR 6 l
- R 46 is H; alkyl; alkenyl; or -(CH 2 ) 0 (CHR 6 ') P C 6 H 4 R 8 ;
- R 47 is H; alkyl; alkenyl; or -(CH 2 ) 0 (CHR 6l ) s OR 55 ;
- R 4 is H; lower alkyl; lower alkenyl; or aryl-lower alkyl;
- R 49 is H; alkyl; alkenyl; -(CHR 6l ) s COOR 57 ; (CHR 5 ') s CONR 58 R 59 ; (CHR 6 ') S PO(OR 60 ) 2 ; -(CHR 6l ) s SOR 62 ; or -(CHR 61 ) S C 6 H 4 R 8 ;
- R 51 is H; alkyl; alkenyl; -(CH 2 ) m (CHR 6 ') s OR 5S ; -(CH 2 ) m (CHR 6l ) s SR 56 ; -(CH 2 ) m (CHR 6 ') s NR 33 R 34 ; -(CH 2 ) m (CHR 6l ) s OCONR 33 R 75 ; -(CH 2 ) rn (CHR 6 ')-NR 20 CONR 3 R 82 ; -(CH 2 ) 0 (CHR 6l ) s COOR 57 ;
- R 52 is H; alkyl; alkenyl; -(CH 2 ) m (CHR 61 ) s OR 55 ; -(CH 2 ) m (CHR 6, ) s SR 56 ; -(CH 2 ) m (CHR 6 ' ) S NR 33 R 34 ; -(CH 2 ) m (CHR 6 ' ) S OCONR 33 R 75 ; -(CH 2 ) m (CHR 6 ') s NR 20 CONR 33 R 82 ; -(CH 2 ) 0 (CHR
- R 53 is H; alkyl; alkenyl; -(CH 2 ) m (CHR 6l ) s OR 55 ; -(CH 2 ) m (CHR 6l ) s SR 56 ; -(CH 2 ) m (CHR 6l ) s NR 33 R 34 ; - (CH 2 ) accent,(CHR 6 ') s OCONR 33 R 75 ; -(CH 2 ) m (CHR 6l ) s NR 20 CONR 33 R 82 ; -(CH 2 ) o (CHR
- R 54 is H; alkyl; alkenyl; -(CH 2 ) m (CHR 6 ') s OR 55 ; -(CH 2 )- n (CHR 6 ') s NR 33 R 34 ; -(CH 2 ) m (CHR 61 ) s OCONR 33 R 75 ; -(CH 2 ) n ,(CHR 61 )-NR 0 CONR 33 R 82 ; -(CH 2 ) o (CHR 6 l )COOR 57 ; -(CH 2 ) 0 (CHR 6,
- R 55 is H; lower alkyl; lower alkenyl; aryl-lower alkyl; -(CH 2 ) m (CHR 6 ') s OR 57 ; -(CH 2 ) m (CHR 6 ') s NR 34 R 63 ; -(CH 2 ) m (CHR 6l )-OCONR 75 R 82 ; -(CH 2 ) m (CHR 6l ) s NR 20 CONR 78 R 82 , -(CH 2 ) felicit(CHR 6 ') s -COR 64 , -(CH 2 ) 0 (CHR 61 )COOR 57 , or -(CH 2 ) 0 (CHR 6 ') S CONR 58 R 59 , R 56 is H, lower alkyl, lower alkenyl, aryl-lower alkyl, -(CH 2 ) m (CHR 61 ) s OR 57 ,
- R 57 is H, lower alkyl, lower alkenyl, aryl lower alkyl, or heteroaryl lower alkyl
- R 58 is H, lower alkyl, lower alkenyl, aryl, heteroaryl, aryl-lower alkyl, or heteroaryl-lower alkyl
- R is H, lower alkyl, lower alkenyl, aryl, heteroaryl, aryl-lower alkyl, or heteroaryl-lower alkyl
- R 58 and R 59 taken together can form -(CH 2 ) 2 6 -, -(CH 2 ) 2 0(CH 2 ) 2 -, -(CH 2 ) 2 S(CH 2 ) 2 -, or -(CH 2 ) 2 NR 57 (CH 2 ) 2 -
- R 60 is H, lower alkyl, lower alkenyl, aryl, or
- R 61 is alkyl, alkenyl, aryl, heteroaryl, aryl-lower alkyl, heteroaryl-lower alkyl, -(CH 2 ) lake,OR 55 , -(CH 2 ) n ,NR 33 R 34 , -(CH 2 ) m OCONR 75 R 82 , -(CH 2 ) m NR 20 CONR 78 R 82 , -(CH 2 ) 0 COOR 37 , -(CH 2 ) 0 NR 58 R 59 , or -(CH 2 ) o PO(COR 60 ) 2 ,
- R * is lowei alkyl, lower alkenyl, aryl, heteroaryl, or aryl-lower alkyl
- R 63 is H, lower alkyl, lower alkenyl, aryl, heteroaryl, aryl-lower alkyl, heteroaryl-lower alkyl,
- -COR 64 , -COOR 57 , -CONR 58 R 59 , -SO,R 62 , or -PO(OR 60 ) 2 , R 34 and R 03 taken together can form -(CH 2 ) 2 6 -, -(CH 2 ) 2 0(CH 2 ) 2 -, -(CH 2 ) 2 S(CH 2 )2-, or -(CH 2 ) 2 NR 57 (CH 2 ) 2 -,
- R 64 is H, lower alkyl, lower alkenyl, aryl, heteroaryl, aryl-lower alkyl, heteroaryl-lower alkyl, -(CH 2 ) p (CHR ⁇ ") s OR 65 , -(CH 2 ) P (CHR 6 I ) S SR 66 , or -(CH 2 ) P (CHR 6I )-NR 34 R 63 , -(CH 2 ) P (CHR 6l ) s OCONR 75 R 82 , -(CH 2 )p(CHR 6l ) s NR 20 CONR 78 R 82 , R 65 is H, lower alkyl, lower alkenyl, aryl, aryl-lower alkyl, heteroaryl-lower alkyl, -COR 57 , -COOR 57 , or -CONR 58 R 59 ,
- R 66 is H, lower alkyl, lower alkenyl, aryl, aryl-lower alkyl, heteroaryl-lower alkyl, or
- m is 2-4, o is 0-4, p is 1-4, q is 0-2, r is 1 or 2, s is 0 or 1 ,
- Z is a chain of 12 ⁇ -amino acid residues, the positions of said amino acid residues in said chain being counted starting from the N-terminal amino acid, whereby these amino acid residues are, depending on their position in the chain, Gly or Pro, or of formula -A-CO-, or of formula -B-CO-, or of one of the types
- R 71 is H, lower alkyl, lower alkenyl, -(CH 2 ) p (CHR 6, ) s OR 75 , -(CH 2 ) p (CHR 6, ) s SR 75 ,
- R 73 is -(CH 2 ) P (CHR 61 ) S NR 33 R 34 , -(CH 2 ) p (CHR 61 ) s OCONR 33 R 75 , -(CH 2 ) P (CHR 6 ') S NR 20 CONR 33 R 82 , -(CH 2 ) 0 (CHR 6l ) s COOR 75 , -(CH 2 ) P C0NR 58 R 59 , -(CH 2 ) p PO(OR 62 ) 2 , -(CH 2 ) p S0 2 R 62 , or -(CH 2 ) o -C 6 R 67 R 68 R 69 R 70 R 76 , R 72 is H, lower alkyl, lower alkenyl, -(CH 2 ) p (CHR 6 ') s OR 85 , or -(CH 2 ) P (CHR 6 ') S SR 85 , R 73 is -(
- R 75 is lower alkyl, lower alkenyl, or aryl-lower alkyl, R 33 and R 75 taken together can form -(CH 2 ) 2 6 -, -(CH 2 ) 2 0(CH 2 ) 2 -, -(CH 2 ) 2 S(CH 2 ) 2 -, or
- -(CH 2 ) 2 NR 57 (CH 2 ) 2 -, R 75 and R 82 taken together can form -(CH 2 ) 2 6 -, -(CH 2 ) 2 0(CH 2 ) 2 -, -(CH 2 ) 2 S(CH 2 ) 2 -, or
- R 76 is H, lower alkyl, lower alkenyl, aryl-lower alkyl, -(CH 2 ) 0 0R 72 , -(CH 2 ) 0 SR 72 , -(CH 2 ) 0 NR 33 R 34 , -(CH 2 ) 0 0C0NR 33 R 75 , -(CH 2 ) o NR 20 CONR 33 R 82 , -(CH 2 ) 0 COOR 75 ; -(CH 2 ) 0 CONR 58 R 59 ; -(CH 2 ) o PO(OR 60 ) 2 ; -(CH 2 ) p S0 2 R 62 ; or -(CH 2 ) 0 COR 64 ;
- R" is -C 6 R 6/ R 68 R 69 R' U R 76 ; or a heteroaryl group of one of the formulae
- R 78 is H; lower alkyl; aryl; or aryl-lower alkyl;
- R 78 and R 82 taken together can form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or -(CH 2 ) 2 NR 57 (CH 2 ) 2 -;
- R is H; lower alkyl; aryl; or aryl-lower alkyl; or
- R 78 and R 79 taken together, can be -(CH 2 ) 2 . 7 -; -(CH 2 ) 2 0(CH 2 ) 2 -; or -(CH 2 ) 2 NR 57 (CH 2 ) 2 -;
- R 80 is H; or lower alkyl;
- R 81 is H, lower alkyl, or aryl-lower alkyl,
- R 82 is H, lower alkyl, aryl, heteroaryl, or aryl-lower alkyl,
- R 33 and R 82 taken together can form -(CH 2 ) 2 . 6 -, -(CH 2 ) 2 0(CH 2 ) 2 -, -(CH 2 ) 2 S(CH 2 ) 2 -, or -(CH 2 ) 2 NR S (CH 2 ) 2 -, R 83 ⁇ s H, lower alkyl, aryl, or -NR 78 R 79 ,
- R 84 is -(CH 2 ) m (CHR 6l ) s OH, -(CH 2 ) p CONR 78 R 79 , -(CH 2 ) P NR 80 CONR 78 R 79 , -(CH 2 ) p C 6 H 4 CONR 78 R 79 , or -
- P10 of type F, or of type D or of type C, or the residue is Pro, Pl l of type E or of type D or of type C or of type F, and PI 2 of type C or of type D or of type E or of type F, or the residue is Pro, or P4 and P9 and/or P2 and PI 1, taken together, can form a group of type H, and at P6 and P7 also D-isomers being possible, with the further proviso that the amino acid residue in P4 is of type C, and/or the amino acid residue in P5 is of type F, and/or the ammo acid residue m P7 is of type C, and/or - the amino acid residue in P8 is of type F, and or the amino acid residue in P9 is of type C, and/or the amino acid residue in PI 0 is of type F, and/or the amino acid residue in PI 1 is of type C or of type F, and pharmaceutically acceptable salts thereof
- these ⁇ -hairpin peptidomimetics can be prepared by a process which comprises (a) coupling an appropriately functionahzed solid support with an appropriately N-protected derivative of that amino acid which in the desired end-product is in position 5, 6 or 7, any functional group which may be present in said N-protected ammo acid derivative being likewise appropriately protected,
- X is an N-protectmg group or, if
- step (e) is to be group (al) or (a2), above, alternatively (fa) coupling the product obtained in step (e) with an appropriately N-protected derivative of an amino acid of the general formula
- the peptidomimetics of the present invention can be prepared by
- X is as defined above and X is an N-protectmg group or, if s to be group (al) or (a2), above, alternatively
- the peptidomimetics of the present invention can also be enantiomers of the compounds of formula I These enantiomers can be prepared by a modification of the above processes m which enantiomers of all chiral starting materials are used
- alkyl designates saturated, straight-chain or branched hydrocarbon radicals having up to 24, preferably up to 12, carbon atoms
- alkenyl designates straight chain or branched hydrocarbon radicals having up to 24, preferably up to 12, carbon atoms and containing at least one or, depending on the chain length, up to four olefinic double bonds
- lower designates radicals and compounds having up to 6 carbon atoms
- the term “lower alkyl” designates saturated, straight-chain or branched hydrocarbon radicals having up to 6 carbon atoms, such as methyl, ethyl, n-propyl, isopropyl, n-butyl, sec -butyl, isobutyl, tert -butyl and the like
- aryl designates aromatic carbocyc c hydrocarbon radicals containing one or two six-membered rings
- the structural element -A-CO- designates ammo acid building blocks which in combination with the structural element -B-CO- form templates (al) and (a2) Templates (a) through (p) constitute building blocks which have an N-termmus and a C-terminus oriented in space in such a way that the distance between those two groups may he between 40-5 5A
- a peptide chain Z is linked to the C-termmus and the N-terminus of the templates (a) through (p) via the corresponding N- and C-termim so that the template and the chain form a cyclic structure such as that depicted in formula I.
- the ⁇ -hairpin conformation is highly relevant for the antibiotic activity of the ⁇ -hairpin mimetics of the present invention
- the ⁇ -hairpin stabilizing conformational properties of the templates (a) through (p) play a key role not only for the selective antimicrobial activity but also for the synthesis process defined hereinabove, as incorporation of the templates at the beginning of the linear protected peptide precursors enhance significantly cyclization yields
- Building blocks A1-A69 belong to a class of amino acids wherein the N-terminus is a secondary amine forming part of a ring Among the genetically encoded amino acids only proline falls into this class
- the configuration of building block Al through A69 is (D), and they are combined with a building block -B-CO- of (L)-configurat ⁇ on
- Preferred combinations for templates (al) are- D Al-CO- L B-CO- to D A69-CO- L B-CO-
- D Pro- L Pro constitutes the prototype of templates (al)
- templates (a2) are -' Al-CO- D B-CO- to L A69-CO- D B-CO-
- L Pro- D Pro constitutes a less preferred prototype of template (a2)
- building blocks -Al-CO- to -A69-CO- in which A has (D)-conf ⁇ gurat ⁇ on are ca ⁇ ying a group R 1 at the ⁇ -position to the N-te ⁇ mnus
- the prefe ⁇ ed values for R 1 are H and lower alkyl with the most preferred values for R 1 being H and methyl
- A1-A69 are shown in (D)-conf ⁇ guratwn which, for R' being H and methyl, corresponds to the (R)-configurat ⁇ on
- this configuration may also have to be expressed as (S)
- R 2 to R 17 can carry an additional substituent designated as R 2 to R 17
- This additional substituent can be H, and if it is other than H, it is preferably a small to medium-sized aliphatic or aromatic group
- R 2 to R 17 are R : H, lower alkyl, lower alkenyl, (CH 2 ) m OR 55 (where R 55 lower alkyl, or lower alkenyl), (CH 2 ) nl SR 56 (where R 56 lower alkyl, or lower alkenyl), (CH 2 ), ruleNR 33 R 34 (where R 33 lower alkyl, or lower alkenyl, R 34 H, or lower alkyl, R 33 and R 34 taken together form
- R 3 H lower alkyl, lower alkenyl, -(CH 2 ) m OR 55 (where R 55 lower alkyl, or lower alkenyl), - (CH 2 ) m SR 56 (where R 56 lower alkyl, or lower alkenyl), -(CH 2 ) m NR 33 R 34 (where R 33 lower alkyl, or lower alkenyl, R 34 H, or lower alkyl, or R 33 and R 34 taken together form -(CH 2 ) 2 6 -, -(CH 2 ) 2 0(CH 2 ) 2 - , -(CH 2 ) 2 S(CH 2 ) 2 -, or -(CH 2 ) 2 NR 57 (CH 2 ) 2 -, where R 57 H, or lower alkyl), -(CH 2 ) m OCONR 33 R 75 (where R 33 H, or lower alkyl, or lower alkenyl, R 75 lower alkyl, or R 33 and R 75 taken together fon
- NR 33 R 34 where R 33 lower alkyl, or lower alkenyl, R 34 H, or lower alkyl, or R 33 and R 34 taken together form -(CH 2 ) 2 ⁇ ,-, -(CH 2 ).0(CH 2 ) 2 - , -(CH 2 ) 2 S(CH 2 ) 2 -, or -(CH 2 ) 2 NR 57 (CH 2 ),-, where R 57 H, or lower alkyl), -(CH 2 ) m OCONR 33 R 75 (where R 33 H, or lower alkyl, or lower alkenyl, R 75 lower alkyl, or R 33 and R 75 taken together form - (CH 2
- R 33 H; or lower alkyl; or lower alkenyl; R 75 : lower alkyl; or R 33 and R 75 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or
- R 59 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -;
- R 60 lower alkyl; or lower alkenyl); -(CH 2 ) 0 S0 2 R 62 (where R 62 : lower alkyl; or lower alkenyl); or - (CH 2 ) q C6H-
- R 7 lower alkyl; lower alkenyl; -(CH 2 ) q OR 55 (where R 55 : lower alkyl; or lower alkenyl); -
- R s H; F; Cl; CF 3 ; lower alkyl; lower alkenyl; -(CH 2 ) 0 OR 55 (where R 55 : lower alkyl; or lower alkenyl); (CH 2 ) 0 SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) 0 NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 .
- R 82 (where R 20 : H; or lower lower alkyl; R 33 : H; or lower alkyl; or lower alkenyl; R 82 : H; or lower alkyl; or R 33 and R 82 taken together form: -(CH 2 ) 2 .
- R 9 lower alkyl; lower alkenyl; -(CH 2 ) 0 0R 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) 0 SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) 0 NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 .
- R'° lower alkyl; lower alkenyl; -(CH 2 ) 0 0R 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) 0 SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) 0 NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form:
- R" H; lower alkyl; lower alkenyl; -(CH 2 ) m OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) m SR 56 (where R 55 : lower alkyl; or lower alkenyl); -(CH 2 ) m NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 - 6 -; -(CH 2 ) 2 0(CH 2 ) 2 - ; -(CH 2 ) 2 S(CH 2 ) 2 -; or -(CH 2 ) 2 NR S7 (CH 2 ) 2 -; where R 57 : H; or lower alkyl); -(CH 2 ) m 0C0NR 33 R 75
- R 33 H; or lower alkyl; or lower alkenyl; R 75 : lower alkyl; or R 33 and R 75 taken together form: - (CH, ; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or
- R 12 H; lower alkyl; lower alkenyl; -(CH 2 ) m OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) m SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) m NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 .
- R u lower alkyl; lower alkenyl; -(CH 2 ) q 0R 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) q SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) q NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 .
- R 14 H; lower alkyl; lower alkenyl; -(CH 2 ) m OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) m SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) m NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 .
- R 16 lower alkyl; lower alkenyl; -(CH 2 ) 0 OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) 0 SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) 0 NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form:
- R 17 lower alkyl, lower alkenyl, -(CH 2 ) q OR 55 (where R 55 lower alkyl, or lower alkenyl), - (CH 2 ) q SR 56 (where R 56 lower alkyl, or lower alkenyl), -(CH 2 ) q NR 33 R 34 (where R 33 lower alkyl, or lower alkenyl, R 34 H, or lower alkyl, or R 33 and R 34 taken together form
- building blocks Al to A69 the following are preferred A5 with R 2 being H, A8, A22, A25, A38 with R 2 being H, A42, A47, and A50 Most preferred are building blocks of type A8'
- R 20 is H or lower alkyl
- R 64 is alkyl, alkenyl, aryl, aryl-lower alkyl, or heteroaryl-lower alkyl, especially those wherein R 64 is n-hexyl (A8'-l), n-heptyl (A8'-2), 4-(phenyl)benzyl (A8'-3), diphenylmethyl (A8'-4), 3-ammo-propyl (A8'-5), 5-am ⁇ no-pentyl (A8'-6), methyl (A8'-7), ethyl (A8'-8), isopropyl (A8'-9), isobutyl (A8'-10), n-propyl (A8'-ll), cyclohexyl (A8*-12), cyclohexylmethyl (A8'-13), n-butyl (A8'-14), phenyl (A8'-15), benzyl (A8'-16
- Building block A70 belongs to the class of open-chained ⁇ -substituted ⁇ -amino acids, building blocks A71 and A72 to the corresponding ⁇ -amino acid analogues and building blocks A73-A104 to the cyclic analogues of A70
- Such amino acid derivatives have been shown to constrain small peptides in well defined reverse turn or U-shaped conformations (C M Venkatachalam, Biopolymers, 1968, 6, 1425-1434, W Kabsch, C Sander, Biopolymers 1983, 22, 2577)
- Such building blocks or templates are ideally suited for the stabilization of ⁇ -hairpin conformations in peptide loops (D Obrecht, M Altorfer, J A Robinson, "Novel Peptide Mimetic Building Blocks and Strategies for Efficient Lead Finding", Adv Med Chem 1999, Vol 4, 1-68, P Balaram, "Non-standard amino acids in peptide design and protein engineering", Curr Opin Struct Biol 1992, 2, 845-851
- templates (al) can also consist of -A70-CO- to A104- CO- where building block A70 to A104 is of either (D)- or (L)-configurat ⁇ on, in combination with a building block -B-CO- of (L)- configuration
- Preferred values for R 20 in A70 to A104 are ⁇ or lower alkyl with methyl being most preferred Preferred values for R 18 , R 19 and R 21 -R 29 in building blocks A70 to A104 are the following R' 8 lower alkyl - R' 9 lower alkyl, lower alkenyl, -(C ⁇ 2 ) p OR 55 (where R 55 lower alkyl, or lower alkenyl), -
- R" lower alkyl; lower alkenyl; -(CH 2 ) 0 OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) 0 SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) 0 NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form:
- R 60 lower alkyl; or lower alkenyl
- -(CH 2 ) 0 S0 2 R 62 (where R 62 : lower alkyl; or lower alkenyl); or -
- R 8 H; F; Cl; CF; lower alkyl; lower alkenyl; or lower alkoxy.
- R 23 H; lower alkyl; lower alkenyl; -(CH 2 ) 0 OR 55 (where R 55 : lower alkyl; or lower alkenyl); -
- R 33 H; or lower alkyl; or lower alkenyl; R 75 : lower alkyl; or R 33 and R 75 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or
- R 8 H; F; Cl; CF 3 ; lower alkyl; lower alkenyl; or lower alkoxy
- R 24 lower alkyl; lower alkenyl; -(CH 2 ) 0 0R 55 (where R 55 : lower alkyl; or lower alkenyl); -
- R 33 H; or lower alkyl; or lower alkenyl; R 75 : lower alkyl; or R 33 and R 75 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or
- R 8 H; F; Cl; CF 3 ; lower alkyl; lower alkenyl; or lower alkoxy
- R 25 H; lower alkyl; lower alkenyl; -(CH 2 ) m OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) m NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 _ 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or -(CH 2 ) 2 NR 57 (CH 2 ) 2 -; where R 57 : H; or lower alkyl); -(CH 2 ) m 0C0NR 33 R 75 (where R 33 : H; or lower alkyl; or lower alkenyl; R 75 : lower alkyl; or R 33 and R 75 taken together form: -(CH 2 ) 2 - «
- R 26 H; lower alkyl; lower alkenyl; -(CH 2 ) m OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) m NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 )2S(CH 2 ) 2 -; or
- R 25 and R 26 taken together can be -(CH 2 ) 2 -6-; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or -(CH 2 ) 2 NR 57 (CH 2 ) 2 -; where R 57 : H; or lower alkyl).
- R 27 H; lower alkyl; lower alkenyl; -(CH 2 ) 0 OR 55 (where R 55 : lower alkyl; or lower alkenyl); -
- R 2S lower alkyl; lower alkenyl; -(CH 2 ) 0 0R 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) 0 SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) 0 NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form:
- R 31 H; lower alkyl; lower alkenyl; -(CH 2 ) P 0R 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) P NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or
- R 33 lower alkyl; lower alkenyl; -(CH 2 ) m 0R 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) m NR 34 R 63 (where R 34 : lower alkyl; or lower alkenyl; R 63 : H; or lower alkyl; or R 34 and R 63 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or
- R 34 H; or lower alkyl.
- R 35 H; lower alkyl; lower alkenyl; -(CH 2 ) m 0R 55 (where R 55 : lower alkyl; or lower alkenyl); -
- (CH 2 ) m NR 33 R 34 (Where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 - ; -(CH 2 ) 2 S(CH 2 ) 2 -; or -(CH 2 ) 2 NR 57 (CH 2 ) 2 -; where R 57 : H; or lower alkyl); -(CH 2 ) m OCONR 33 R 75 (where R 33 : H; or lower alkyl; or lower alkenyl; R 75 : lower alkyl; or R 33 and R 75 taken together form: -(CH 2 ) 2 - 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or -(CH 2 )
- R 36 lower alkyl; lower alkenyl; or aryl-lower alkyl.
- R 37 H; lower alkyl; lower alkenyl; -(CH 2 ) p OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) p NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 .
- R 3S H; lower alkyl; lower alkenyl; -(CH 2 ) P 0R 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) P NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 - 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or
- R 39 H; lower alkyl; lower alkenyl; -(CH 2 ) m OR 5S (where R S5 : lower alkyl; or lower alkenyl); - (CH 2 ) n .N(R 20 )COR 64 (where: R 20 : H; or lower alkyl; R 64 : lower alkyl; or lower alkenyl); - (CH 2 ) 0 COOR 57 (where R 57 : lower alkyl; or lower alkenyl); -(CH 2 ) 0 CONR 58 R 59 (where R 58 : lower alkyl; or lower alkenyl; and R 59 : H; lower alkyl; or R 58 and R 59 taken together form: -(CH 2 ) .
- R 40 lower alkyl; lower alkenyl; or aryl-lower alkyl.
- R 4 ' H; lower alkyl; lower alkenyl; -(CH 2 ) P 0R 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) P NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or
- R 42 H; lower alkyl; lower alkenyl; -(CH 2 ) P 0R 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) P NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 _ 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 - ; or
- R 43 H; lower alkyl; lower alkenyl; -(CH 2 ) m OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) m SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) m NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form:
- R 44 lower alkyl; lower alkenyl; -(CH 2 ) p OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) P SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) P NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form:
- R 45 H; lower alkyl; lower alkenyl; -(CH 2 ) 0 OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) 0 SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) 0 NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form:
- R 46 H; lower alkyl; lower alkenyl; -(CH 2 ) s OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) S SR 56 (where R 56 : lower alkyl; or lower alkenyl); -(CH 2 ) S NR 3 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form:
- R 47 H; or OR 55 (where R 55 : lower alkyl; or lower alkenyl).
- R" H or lower alkyl.
- R 57 H; or lower alkyl
- R 8 H; F; Cl; CF 3 ; lower alkyl; lower alkenyl; or lower alkoxy.
- R 50 H; methyl.
- R 5 ' H; lower alkyl; lower alkenyl; -(CH 2 ) m OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) m NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or
- R 52 H; lower alkyl; lower alkenyl; -(CH ) m OR 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ) m NR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 . 6 -; -(CH 2 ) 2 0(CH 2 ) 2 -; -(CH 2 ) 2 S(CH 2 ) 2 -; or
- R 53 H; lower alkyl; lower alkenyl; -(CH 2 ) m 0R 55 (where R 55 : lower alkyl; or lower alkenyl); - (CH 2 ), ruleNR 33 R 34 (where R 33 : lower alkyl; or lower alkenyl; R 34 : H; or lower alkyl; or R 33 and R 34 taken together form: -(CH 2 ) 2 .
- building blocks A70 to A104 the following are preferred: A74 with R 22 being H, A75, A76, A77 with R 22 being H, A78 and A79.
- the building block -B-CO- within template (al) and (a2) designates an L-amino acid residue.
- Preferred values for B are: -NR 20 CH(R 71 )- and enantiomers of groups A5 with R 2 being H, A8, A22, A25, A38 with R 2 being H, A42, A47, and A50.
- Most preferred are Ala L-Alanine
- the most preferred values for B also include groups of type A8" of (L)-conf ⁇ gurat ⁇ on
- R 20 is H or lower alkyl and R 64 is alkyl, alkenyl, aryl, aryl-lower alkyl, or heteroaryl-lower alkyl, especially those wherein R 64 is n-hexyl (A8"-21), n-heptyl (A8"-22), 4-(phenyl)benzyl (A8"- 23), diphenylmethyl (A8"-24), 3-am ⁇ no-propyl (A8"-25), 5-am ⁇ no-pentyl (A8"-26), methyl (A8 M - 27), ethyl (A8"-28), isopropyl (A8"-29), isobutyl (A8"-30), n-propyl (A8"-31), cyclohexyl (A8"- 32), cyclohexylmethyl (A8"-33), n-butyl (A8"-34), phenyl (A8"-35),
- the peptidic chain Z of the ⁇ -hai in mimetics described herein is generally defined in terms of amino acid residues belonging to one of the following groups
- amino acid residues m chain Z can also be of formula -A-CO- or of formula -B-CO- wherein A and B are as defined above
- Gly can also be an amino acid residue in chain Z
- Pro can be an ammo acid residue in chain Z, too, with the exception of positions where interstrand linkages (H) are possible
- Group C comprises amino acid residues with small to medium-sized hydrophobic side chain groups according to the general definition for substituent R 72
- a hydrophobic residue refers to an amino acid side chain that is uncharged at physiological pH and that is repelled by aqueous solution
- these side chains generally do not contain hydrogen bond donor groups, such as (but not limited to) primary and secondary amides, primary and secondary amines and the corresponding protonated salts thereof, thiols, alcohols, phosphonates, phosphates, ureas or thioureas
- they may contain hydrogen bond acceptor groups such as ethers, thioethers, esters, tertiary amides, alkyl- or aryl phosphonates and phosphates or tertiary amines
- Genetically encoded small-to-medium-sized amino acids include alanine, isoleucine, leucine, methionine and valine
- Group D comprises ammo acid residues with aromatic and heteroaromatic side chain groups according to the general definition for substituent R 73
- An aromatic amino acid residue refers to a hydrophobic amino acid having a side chain containing at least one ring having a conjugated ⁇ - electron system (aromatic group)
- they may contain hydrogen bond donor groups such as (but not limited to) primary and secondary amides, primary and secondary amines and the corresponding protonated salts thereof, thiols, alcohols, phosphonates, phosphates, ureas or thioureas, and hydrogen bond acceptor groups such as (but not limited to) ethers, thioethers, esters, ternary amides, alkyl- or aryl phosphonates -and phosphates or tertiary amines Genetically encoded aromatic amino acids include phenylalanine and tyrosine
- a heteroaromatic amino acid residue refers to a hydrophobic amino acid having a side chain containing at least one ring having a conjugated ⁇ -system incorporating at least one heteroatom such as (but not limited to) O, S and N according to the general definition for substituent R 77
- residues may contain hydrogen bond donor groups such as (but not limited to) primary and secondary amides, primary and secondary amines and the corresponding protonated salts thereof, thiols, alcohols, phosphonates, phosphates, ureas or thioureas, and hydrogen bond acceptor groups such as (but not limited to) ethers, thioethers, esters, ternary amides, alkyl- or aryl phosphonates - and phosphates or tertiary amines Genetically encoded heteroaromatic amino acids include tryptophan and histidine
- Group E comprises amino acids containing side chains with polar-cationic, acylamino- and urea- derived residues according to the general definition for substituen R
- Polar-cationic refers to a basic side chain which is protonated at physiological pH
- Genetically encoded polar-cationic ammo acids include arginine, lysine and histidine Citrulhne is an example for an urea derived amino acid residue
- Group F comprises ammo acids containing side chains with polar-non-charged residues according to the general definition for substituent R 84
- a polar-non-charged residue refers to a hydrophilic side chain that is uncharged at physiological pH, but that is not repelled by aqueous solutions
- Such side chains typically contain hydrogen bond donor groups such as (but not limited to) primary and secondary amides, primary and secondary amines, thiols, alcohols, phosphonates, phosphates, ureas or thioureas These groups can form hydrogen bond networks with water molecules In addition they may also contain hydrogen bond acceptor groups such as (but not limited to) ethers, thioethers, esters, tet ⁇ ary amides, alkyl- or aryl phosphonates -and phosphates or tertiary amines Genetically encoded polar-non-charged amino acids include asparagme, cysteine, glutamine, serine and threon
- Group H comprises side chains of preferably (L)-am ⁇ no acids at opposite positions of the ⁇ -strand region that can form an interstrand linkage
- the most widely known linkage is the disulfide bridge formed by cystemes and homo-cysteines positioned at opposite positions of the ⁇ -strand
- Various methods are known to form disulfide linkages including those described by J P Tam et al Synthesis 1979, 955-957, Stewart et al , Solid Phase Peptide Synthesis, 2d Ed , Pierce Chemical Company, III , 1984, Ahmed et al J Biol Chem 1975, 250, 8477-8482 , and Pennington et al , Peptides, pages 164- 166, Giralt and Andreu, Eds , ESCOM Leiden, The Netherlands, 1990
- disulfide linkages can be prepared using acetamidomethyl ( Acm)- protective groups for cysteine
- a well established interstrand linkage consists in linking ornithines and
- residues for group C are Ala L-Alanine
- Particularly prefened residues for group E are Arg L-Argimne
- the peptidic chain Z within the ⁇ -hairpin mimetics of the invention comprises 12 amino acid residues
- Each of the positions PI to PI 2 will preferably contain an amino acid residue belonging to one of the above types C to F, or of fomiula -A-CO- or of formula -B-CO- as follows
- amino acid residues in positions PI to P12 are - PI Arg
- PI 2 Arg with the proviso that the amino acid residue in position P4 is Val, and/or the amino acid residue in position P9 is Leu or Val, and/or the amino acid residue in position P10 is Thr or Gin, and/or the amino acid residue in position PI 1 is Val or Leu or Gin
- Particularly prefened ⁇ -peptidomimetics of the invention include those described in Examples 1 , to 8
- the processes of the invention can advantageously be carried out as parallel array syntheses to yield libraries of template-fixed ⁇ -hairpin peptidomimetics of the above general formula I
- Such parallel syntheses allow one to obtain anays of numerous (normally 24 to 192, typically 96) compounds of general formula I in high yields and defined purities, minimizing the formation of dimeric and polymeric by-products
- the proper choice of the functionalized solid-support (I e solid support plus linker molecule), templates and site of cyclization play thereby key roles
- the functionalized solid support is conveniently derived from polystyrene crosshnked with, preferably 1-5%, divinylbenzene, polystyrene coated with polyethyleneglycol spacers (Tentagel R ), and polyacrylamide resins (see also Obrecht, D , Villalgordo, J -M, "Solid- Supported Combinatorial and Parallel Synthesis of Small-Molecular-Weight Compound Libraries", Tetrahedron Organic Chemistry Series, Vol 17, Pergamon, Elsevier Science, 1998)
- the solid support is functionalized by means of a linker, l e a bifunctional spacer molecule which contains on one end an anchoring group for attachment to the solid support and on the other end a selectively cleavable functional group used for the subsequent chemical transformations and cleavage procedures
- the linker must be designed to eventually release the carboxyl group under mild acidic conditions which do not affect protecting groups present on any functional group in the side-chains of the various amino acids
- Linkers which are suitable for the purposes of the present invention form acid-labile esters with the carboxyl group of the amino acids, usually acid-labile benzyl, benzhydryl and t ⁇ tyl esters, examples of linker structures of this kind include 2-methoxy-4-hydroxymethylphenoxy (Sas ⁇ n R linker), 4-(2,4-d ⁇ methoxyphenyl- hydroxymethyl)-phenoxy (Rink linker), 4-(4-hydroxymethyl-3-methoxyphenoxy)buty ⁇ c acid (HMPB linker),
- the support is derived from polystyrene crosshnked with, most preferably 1-5%, divinylbenzene and functionalized by means of the 2-chlorotntyl linker
- the processes of the invention can be advantageously earned out as described herein below but it will be immediately apparent to those skilled in the art how these procedures will have to be modified in case it is desired to synthesize one single compound of the above formula I
- reaction vessels normally 24 to 192, typically 96
- 25 to 1000 mg preferably 100 mg
- of the appropriate functionalized solid support preferably 1 to 3% cross linked polystyrene or tentagel resin
- the solvent to be used must be capable of swelling the resin and includes, but is not limited to, dichloromethane (DCM), dimethylformamide (DMF), N-methylpyrrohdone (NMP), dioxane, toluene, tetrahydrofuran (THF), ethanol (EtOH), tnfluoroethanol (TFE), isopropylalcohol and the like
- Solvent mixtures containing as at least one component a polar solvent e g 20% TFE/DCM, 35% THF/NMP
- Suitable protecting groups for amino acids and, respectively, for their residues are, for example,
- guanidino group (as is present e. g. in the side-chain of arginine)
- the 9-fluorenylmethoxycarbonyl- (Fmoc)-protected amino acid de ⁇ vatives are preferably used as the building blocks for the construction of the template-fixed ⁇ -hairpin loop mimetics of formula I
- I e cleaving off of the Fmoc group 20% pipe ⁇ dine in DMF or 2% DBU/2% pipe ⁇ dine in DMF can be used
- the quantity of the reactant, l e of the ammo acid derivative is usually 1 to 20 equivalents based on the milhequivalents per gram (meq/g) loading of the functionalized solid support (typically 0 1 to 2 85 meq/g for polystyrene resins) originally weighed into the reaction tube Additional equivalents of reactants can be used if required to dnve the reaction to completion in a reasonable time
- the reaction tubes, in combination with the holder block and the manifold, are reinserted into the reservoir block and the apparatus is fastened together Gas flow through the manifold is initiated to provide a controlled environment, for example, nitrogen, argon, air and the like The gas flow may also be heated or chilled prior to flow through the manifold Heating or cooling of the reaction wells is achieved by heating the reaction block or cooling externally with lsopropanol/dry ice and the like to bring about the desired synthetic reactions Agitation is achieved by shaking or magnetic stirnng (within the reaction tube)
- reaction wells are filled with solvent (preferably 5 ml), the reaction tubes, in combination with the holder block and manifold, are immersed and agitated for 5 to 300 minutes, preferably 15 minutes, and drained by gravity followed by gas pressure applied through the manifold inlet (while closing the outlet) to expel the solvent,
- solvent preferably 5 ml
- Both of the above washing procedures are repeated up to about 50 times (preferably about 10 times), monitoring the efficiency of reagent, solvent, and byproduct removal by methods such as TLC, GC, or inspection of the washings
- Detachment of the fully protected linear peptide from the solid support is achieved by immersion of the reaction tubes, m combination with the holder block and manifold, in reaction wells containing a solution of the cleavage reagent (preferably 3 to 5 ml) Gas flow, temperature control, agitation, and reaction monitoring are implemented as described above and as desired to effect the detachment reaction
- the reaction tubes, in combination with the holder block and manifold are disassembled from the reservoir block and raised above the solution level but below the upper hp of the reaction wells, and gas pressure is applied through the manifold inlet (while closing the outlet) to efficiently expel the final product solution into the reservoir wells
- the resin remaining in the reaction tubes is then washed 2 to 5 times as above with 3 to 5 ml of an appropriate solvent to extract (wash out) as much of the detached product as possible
- the product solutions thus obtained are combined, taking care to avoid cross-mixing
- the individual solutions/extracts are then manipulated as needed to isolate the final compounds
- Interstrand linkages and their formation have been discussed above, in connection with the explanations made regarding groups of the type H which can, for example, be disulfide bndges formed by cysteines and homocysteines at opposite positions of the ⁇ -strand, or glutamic and aspartic acid residues linking ornithines and, respectively, lysines located at opposite ⁇ -strand positions by amide bond formation
- groups of the type H which can, for example, be disulfide bndges formed by cysteines and homocysteines at opposite positions of the ⁇ -strand, or glutamic and aspartic acid residues linking ornithines and, respectively, lysines located at opposite ⁇ -strand positions by amide bond formation
- the formation of such interstrand linkages can be effected by methods well known in the art
- the fully protected peptide derivative of type I is treated with 95% TFA, 2 5% H 2 0, 2 5% TIS or another combination of scavengers for effecting the cleavage of protecting groups
- the cleavage reaction time is commonly 30 minutes to 12 hours, preferably about 2 hours
- most of the TFA is evaporated and the product is precipitated with ether/hexane (1 1) or other solvents which are suitable therefor
- the cyclic peptide derivative obtained as end- product can be isolated Depending on its pu ⁇ ty, this peptide derivative can be used directly for biological assays, or it has to be further purified, for example by preparative HPLC
- A14 Amino acids of type A14 can be made according to Scheme 1 Scheme 1
- A30 and A31 can be prepared according to Schemes 4 and 5
- i HBr; ii: DBU, Mel, DMF; iii: DIBAL-H, THF; iv: EtOH, pyridinium p-toluenesulfonate, mol. sieves 4A; v. lithium hexamethyldisilazide, THF, -78°, 43; vi: Pd/C, H 2 , EtOH; then DBU,
- i HBr; ii: DBU, Mel, DMF; iii: DIBAL-H, THF; iv: EtOH, pyridinium p-toluenesulfonate, mol. sieves 4A; v: lithium hexamethyldisilazide, THF, -78°, 47; vi: Pd/C, H 2 , EtOH; then DBU, Mel,
- i HBr; ii: DBU, Mel, DMF; iii: DIBAL-H, THF; iv: EtOH, pyridinium p-toluenesulfonate, mol. sieves 4A; v: lithium hexamethyldisilazide, THF, -78°, 51 ; vi: Pd/C, H 2 , EtOH; then DBU,
- i HBr; ii: DBU, Mel, DMF; iii: DIBAL-H, THF; iv: EtOH, pyridinium p-toluenesulfonate, mol. sieves 4A; v: lithium hexamethyldisilazide, THF, -78°, 59; vi: Pd/C, H 2 , EtOH; then DBU,
- i HBr; ii: DBU, Mel, DMF; iii: DIBAH, THF; iv: EtOH, pyridinium p-toluenesulfonate, mol. sieves 4A; v: lithium hexamethyldisilazide, THF, -78°, 63 vi: Pd/C, H 2 , EtOH; then DBU,
- i iBuMgCI.THF; ii: NaH, THF; iii: lithium hexamethyldisilazide, THF, chlorotrimetylsilane, -78°; then R 6 -X; iv: NaOHaq., MeOH, 75°; then HCIaq.; v: DBU, Mel, DMF; vi: lithium hexamethyldisilazide , THF, chlorotrimetylsilane, -78°; then R 1 -X; vii: resolution (e.g.
- i NaOMe, MeOH; ii: NaH, THF; iii: NaOHaq., MeOH, 75°; then HCIaq.; iv: DBU, Mel, DMF; v: lithium hexamethyldisilazide, THF, chlorotrimethylsilane, -78°; then R 1 -X; vi: resolution (e.g. lipase); then isolation of methylester: DBU, Mel, DMF; vii: LiOHx1H 2 0, MeOH, H 2 0; viii:TFA,
- A59 can be prepared according to Scheme 21.
- i NaOMe, MeOH; ii: NaH, THF; iii: NaOHaq., MeOH, 75°; then HCIaq.; iv: DBU, Mel, DMF; v: lithium hexamethyldisilazide, THF, chlorotrimethylsilane, -78°; then R 1 -X; vi: resolution (e.g. lipase); then isolation of methylester: DBU, Mel, DMF; vii: LiOHx1 H 2 0, MeOH, H 2 0; viii:TFA,
- i resolution (e.g. lipase); then DBU, Mel, DMF; ii: lithium hexamethyldisilazide, THF, chlorotrimethylsilane, -78°; then R 6 -X; iii: LiOHx1 H 2 0, MeOH, H 2 0; iv: TFA, CH 2 CI 2 ; v: FmocOSu,
- building blocks A70 belong to the class of open-chain ⁇ -substituted ⁇ -amino acids, A71 and A72 to the class of the corresponding ⁇ -amino acid analogues and A73-A104 to the class of the cyclic analogues of A70
- A73-A104 can be prepared starting from the corresponding ketones 138, hydantoin formation (139) (E Ware, J Chem Res 1950, 46, 403, L H Goodson, I L Honigberg, j j Lehmann, W H Burton, J Org Chem 1960, 25, 1920, S N Rastogi, J S Bindra, N Anand, Ind J Chem 1971, 1 175, D Obrecht, U Bohdal, C Broger, D Bur, C Lehmann, R Ruffieux, P Schonholzer, C Spiegler, He7v Chim Acta 1995, 78, 563-580) and saponification (Ba(O ⁇ ) 2 ) to yield the racemic amino acids 140, which upon Schotten-Baumann-acylation and cyclization with N,N'- dicyclohexylcarbodiimide gave azlactones 141 Reaction with L-phenylalanme cyclohexylamide (D Obrecht, U Bohd
- A71 Amino acid building blocks of this type can be conveniently prepared from the corresponding disubstituted succinates 146 by C-.r- t.5-rearrangement as shown in Scheme 29 Scheme 29
- the phthalimide group is cleaved off from the resulting product, conveniently by treatment with hydrazine in a suitable solvent such as ethanol at an elevated temperature, suitably at about 80° C and cleavage of the formed product with tnfluoracetic acid in CH 2 C1 2 vin
- the formed amino acid is conveniently protected with reagents such as 9- fluorenylmethoxcarbonyl chloride or 9-fluorenylmethoxcarbonyl succimmide using a base such as sodium carbonate or triethylamine m a suitable solvent or mixture of solvents such as dioxane and water, or dichloromethane to yield 154 as described by Bisang, C , Weber, C , Robinson, J A He7v Chim Acta 1996, 79, 1825-1842
- n The phthalimide group is cleaved off from the product, conveniently by hydrazmolysis, e.g. by treatment with methylhydrazine in a suitable solvent such as DMF nr
- a benzoylatmg reagent such as benzoic acid anhydride or benzoylchlo ⁇ de and a base such as triethylamine or
- i 166 can be synthesized from 165 according to P Waldmeier, "Solid-supported synthesis of highly substituted xanthene-de ⁇ ved templates for the synthesis of ⁇ -tum stabilized cyclic peptide libraries", PhD-thesis, University of Zurich, 1996
- cleaving the phthalimide group 166 is conveniently submitted to hydrazmolysis, e g by treatment with hydrazine hydrate in a suitable solvent such as ethanol at an elevated temperature, e g at about 80° C n
- the intermediate aminonit ⁇ le is saponified, conveniently under basic conditions, e g with aqueous sodium hydroxide in a suitable solvent such as ethanol at an elevated temperature, conveniently under reflux, to yield 167
- Double ortho- brommation of 171 is performed preferably with excess bromine in acetic acid and dichloromethane
- amino group is protected, conveniently Cbz-protected, with reagents such as benzyloxycarbonyl chloride or succimmide in a suitable solvent such as dioxane in the presence of a base such as aqueous sodium hydroxide
- the carboxylic acid group is este ⁇ fied, preferably with DBU and methyl iodide in DMF to yield 172
- R 38 vi For cleaving the benzyloxy group the intermediate is conveniently heated with sodium cyanide adsorbed on aluminum oxide and methanol vii Treatment with an appropriate t ⁇ flating reagent, preferably trifluoromethanesulfonic acid anhydride, in the presence of a base such as 2,6-d ⁇ -tert -butyl-pyndine in a suitable solvent such as dichloromethane via Introduction of lower alkyl and aryl substituents (R 36 ), e g by pallad ⁇ um(O)- catalyzed Stille- (Stille, J K Angew Chem 1986, 68, 504) and Suzuki- couplings (Oh-e, T , Myaura, N ,
- 3,7-Dimethoxyphenothiazine 186 is prepared and converted into 187 according to Muller, K.; Obrecht, D.; Knierzinger, A.; Spiegler, C; Bannwarth, W.; Trzeciak, A.; Englert, G.; Labhardt, A.; Schonholzer, P. Perspectives in Medicinal Chemistry, Editor Testa, B.; Kyburz, E.; Fuhrer, W.; Giger, R., Weinheim, New York, Basel, Cambridge: Verlag Helvetica Chimica Acta, 1993, 513-531; Bannwarth, W.; Gerber, F.; Grieder, A.; Knierzinger, A.; Muller, K.; Obrecht.
- the benzyl group is cleaved off from 187 conveniently by hydrogenation, e.g. with H 2 and a catalyst such as palladium on charcoal in a suitable solvent such as ethanol, DMF or ethyl acetate.
- a catalyst such as palladium on charcoal
- a suitable solvent such as ethanol, DMF or ethyl acetate.
- Lower alkyl (R 43 ) by alkylation using an appropriate alkylating agent (R 3 -X'; X - OTf, Br, I) and strong bases such as sodium amide in liquid ammonia or sodium hydride in tetrahydrofuran, dioxan or DMF in the presence of a phase transfer catalyst such as TDA-I.
- substituted lower alkyl R 43
- R 43 CH 2 COOR 55 and CH CH 2 COOR 55 can be introduced by treatment with the appropriate 2-halo acetic and, respectively, 3-halo propionic acid derivatives.
- Any other functionahzation known for diarylamines can be employed for introduction of substituents R 43 .
- the cyano group of 188 and, respectively, 189 is hydrolyzed, conveniently under acidic conditions, e g with 25% aqueous hydrochloric acid in a suitable solvent such as dioxane at an elevated temperature, e g at about 100° C vi
- the phthalimide group of the intermediate is cleaved, conveniently by hydrazmolysis, e g with hydrazine hydrate in a suitable solvent such as ethanol vii
- the free ammo group is conveniently protected with reagents such as 9- fluorenylmethoxcarbonyl chloride or 9-fluorenylmethoxcarbonyl succimmide using a base such as sodium carbonate or triethylamine in a suitable solvent or mixture of solvents such as dioxane and water, or dichloromethane to yield 190 and, respectively, 191 Scheme 39
- the cyano group of 188 is hydrolyzed, conveniently under acidic conditions, e g with 25% aqueous hydrochloric acid in a suitable solvent such as dioxane at an elevated temperature, e g at about 100° C ii
- the phthalimide group of the intermediate is cleaved, conveniently by hydrazmolysis, e g with hydrazine hydrate m a suitable solvent such as ethanol to yield 192 m
- Double ortho- brommation of 192 is performed preferably with excess bromine in acetic acid and dichloromethane
- Any other functionahzation by electrophilic aromatic substitution known can be employed for introduction of substituents R ' and R 42 iv
- the amino group is protected, conveniently Cbz-
- 197 can be prepared from commercial resorufin and coverted into 198 according to Muller, K , Obrecht, D , Knierzinger, A , Spiegler, C , Bannwarth, W , Trquelak, A , Englert, G , Labhardt, A , Schonholzer, P Perspectives in Medicinal Chemistry, Editor Testa, B , Kyburz, E , Fuhrer, W , Giger, R , Weinheim, New York, Basel, Cambridge Verlag Helvetica Chimica Acta, 1993, 513-531, Bannwarth, W , Gerber, F , G ⁇ eder, A , Knierzinger, A , Muller, K , Obrecht D , Trquelak, A Can Pat Appl CA2101599(131 pages)
- For splitting off the benzyl group 198 is conveniently hydrogenated e g with H 2 and a catalyst such as palladium on charcoal in a suitable solvent such as ethanol, DMF or eth
- diarylamino groups known can be employed for introduction of substituents R 43 in Cleavage of the methoxy groups of 199, conveniently by treatment with excess boron tnbromide in dichloromethane at temperatures ranging from about -20° to about room temperature iv
- the intermediate bis-phenol derivative is preferably reacted with R 39 and R 0 -X' (X - OTf, Br,
- the cyano group of 199 and, respectively, 200 is hydrolyzed under acidic conditions, e g with 25% aqueous hydrochloric acid in a suitable solvent such as dioxane at an elevated temperature, conveniently at about 100° C vi-
- the phthalimide group is cleaved, conveniently by hydrazmolysis, e g with hydrazine hydrate in suitable solvent such as ethanol v ⁇ .
- the free amino group is conveniently protected with reagents such as 9- fluorenylmethoxcarbonyl chloride or 9-fluorenylmethoxcarbonyl succimmide using a base such as sodium carbonate or triethylamine in suitable solvent or mixture of solvents such as dioxane and water, or dichloromethane to yield 201 and, respectively, 202
- reagents such as 9- fluorenylmethoxcarbonyl chloride or 9-fluorenylmethoxcarbonyl succimmide using a base such as sodium carbonate or triethylamine in suitable solvent or mixture of solvents such as dioxane and water, or dichloromethane
- the cyano group of 199 is hydrolyzed, conveniently under acidic conditions, e g with 25% aqueous hydrochloric acid in a suitable solvent such as dioxane at an elevated temperature, e g at about 100° C ii
- the phthalimide group of the intermediate is cleaved, conveniently by hydrazmolysis, e g with hydrazine hydrate in a suitable solvent such as ethanol to yield 203 m
- Double ortho- brommation of 203 is performed preferably with excess bromine in acetic acid and dichloromethane
- the amino group is protected, conveniently Cbz-protected
- Templates(d) can be prepared according to D Obrecht, U Bohdal, C Lehmann, P Schonholzer, K Muller, Tetrahedron 1995, 57, 10883, D Obrecht, C Abrecht, M Altorfer, U Bohdal, A Gneder, M Kleber. P Pfyffer, K Muller, Helv Chim Acta 1996, 79, 1315-1337
- the ⁇ -hairpin peptidomimetics of the invention can be used in a wide range of applications in order to inhibit the growth of or to kill microorganisms In particular they can be used to selectively inhibit the growth of or to kill microorganisms such as Pseudomonas aeruginosa and Acinetobacter They can be used for example as disinfectants or as preservatives for materials such as foodstuffs, cosmetics, medicaments and other nutnent-containing materials.
- the ⁇ -hairpin peptidomimetics of the invention can also be used to treat or prevent diseases related to microbial infection m plants and animals
- the ⁇ -hairpm peptidomimetics can be added to the desired material singly, as mixtures of several ⁇ -hairpin peptidomimetics or in combination with other antimicrobial agents
- the ⁇ -hairpm peptidomimetics may be administered per se or may be applied as an appropriate formulation together with carriers, diluents or excipients well known in the art
- the ⁇ -hairpin peptidomimetics can be administered singly, as mixtures of several ⁇ -hairpin peptidomimetics, in combination with other antimicrobial or antibiotic agents, or anti
- compositions comprising ⁇ -hairpin peptidomimetics of the invention may be manufactured by means of conventional mixing, dissolving, granulating, coated tablet-making, levigating, emulsifying, encapsulating, entrapping or lyophihzing processes
- Pharmaceutical compositions may be formulated in conventional manner using one or more physiologically acceptable carriers, diluents, excipients or auxiliaries which facilitate processing of the active ⁇ - hairpin peptidomimetics into preparations which can be used pharmaceutically Proper formulation depends upon the method of administration chosen
- ⁇ -hairpin peptidomimetics of the invention may be formulated as solutions, gels, ointments, creams, suspensions, etc as are well-known in the art
- Systemic formulations include those designed for administration by injection, e g subcutaneous, intravenous, intramuscular, intrathecal or intraperitoneal injection, as well as those designed for transdermal, transmucosal, oral or pulmonary administration
- the ⁇ -hairpin peptidomimetics of the invention may be formulated in adequate solutions, preferably in physiologically compatible buffers such as Hink's solution, Ringer's solution, or physiological saline buffer
- the solution may contain formulatory agents such as suspending, stabilizing and/or dispersing agents
- the ⁇ -hairpin peptidomimetics of the invention may be in powder form for combination with a suitable vehicle, e g , sterile pyrogen-free water, before use
- penetrants appropnate to the barrier to be permeated are used in the formulation as known in the art
- the compounds can be readily formulated by combining the active ⁇ -hairpin peptidomimetics of the invention with pharmaceutically acceptable carriers well known in the art Such carriers enable the ⁇ -hairpin peptidomimetics of the invention to be formulated as tablets, pills, dragees, capsules, liquids, gels, syrups, slurnes, suspensions etc , for oral ingestion of a patient to be treated
- suitable excipients include fillers such as sugars, such as lactose, sucrose, mannitol and sorbitol, cellulose preparations such as maize starch, wheat starch, rice starch, potato starch, gelatin, gum tragacanth, methyl cellulose, hydroxypropylmethyl cellulose, sodium carboxymethylcellulose, and/or polyvinylpyrrohdone (PVP), granulating agents, and binding agents
- desintegratmg agents may be added, such as cross-
- suitable earners, excipients or diluents include water, glycols, oils, alcohols, etc.
- flavoring agents, preservatives, coloring agents and the like may be added
- composition may take the form of tablets, lozenges, etc formulated as usual
- the ⁇ -hairpin peptidomimetics of the invention are conveniently delivered in form of an aeorosol spray from pressurized packs or a nebulizer, with the use of a suitable propellant, e g dichlorodifluoromethane, t ⁇ chlorofluromethane, carbon dioxide or another suitable gas
- a suitable propellant e g dichlorodifluoromethane, t ⁇ chlorofluromethane, carbon dioxide or another suitable gas
- the dose unit may be determined by providing a valve to deliver a metered amount
- Capsules and cartridges of e g gelatin for use in an inhaler or insufflator may be formulated containing a powder mix of the ⁇ -hairpin peptidomimetics of the invention and a suitable powder base such as lactose or starch
- the compounds may also be formulated in rectal or vaginal compositions such as suppositones together with appropriate suppository bases such as cocoa butter or other glyce ⁇ des
- the ⁇ -hairpin peptidomimetics of the invention may also be formulated as depot preparations Such long acting formulations may be administered by implantation (e g subcutaneously or intramuscularly) or by intramuscular injection
- the ⁇ -hairpin peptidomimetics of the invention may be formulated with suitable polymeric or hydrophobic materials (e g as an emulsion in an acceptable oil) or ion exchange resins, or as sparingly soluble salts
- ⁇ -hairpin peptidomimetics of the invention may be delivered using a sustained-release system, such as semipermeable matrices of solid polymers containing the therapeutic agent Various sustamed-release materials have been established and are well known by those skilled m the art Sustained-release capsules may, depending on their chemical nature, release the compounds for a few weeks up to over 100 days Depending on the chemical nature and the biological stability of the therapeutic agent, additional strategies for protein stabilization may be employed
Abstract
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AU2003232253A1 (en) * | 2003-05-02 | 2004-11-23 | Polyphor Ag | Template-fixed beta-hairpin peptidomimetics with cxcr4 antagonizing activity |
JP4928261B2 (en) | 2003-06-18 | 2012-05-09 | トランザイム・ファーマ・インコーポレイテッド | Macrocyclic antagonist of motilin receptor |
CN105111280B (en) * | 2005-02-17 | 2020-01-24 | 波利弗尔有限公司 | Template-fixed beta-hairpin peptidomimetics with protease inhibitory activity |
CA3035941C (en) | 2005-02-17 | 2021-11-16 | Polyphor Ltd. | Template-fixed beta-hairpin peptidomimetics with protease inhibitory activity |
WO2007079597A1 (en) * | 2006-01-16 | 2007-07-19 | Polyphor Ltd. | Template - fixed peptidomimetics with antimicrobial activity |
EP2114986B1 (en) * | 2007-01-29 | 2013-05-22 | Polyphor Ltd. | Template-fixed peptidomimetics |
MX2009008843A (en) | 2007-02-28 | 2009-08-28 | Polyphor Ltd | Template-fixed peptidomimetics. |
GB0803352D0 (en) * | 2008-02-22 | 2008-04-02 | Ntnu Technology Transfer As | Oligopeptidic compounds and uses thereof |
US8895499B2 (en) | 2010-08-05 | 2014-11-25 | Polyphor Ag | β-hairpin peptidomimetics |
US20130123196A1 (en) * | 2011-08-31 | 2013-05-16 | New York University | Thioether-, ether-, and alkylamine-linked hydrogen bond surrogate peptidomimetics |
AU2012320674A1 (en) * | 2011-10-07 | 2014-03-20 | Polyphor Ag | Template -fixed peptidomimetics as inhibitors of FPR1 |
RS56249B1 (en) | 2012-08-08 | 2017-11-30 | Polyphor Ag | Combinations with a backbone-cyclized peptide |
NZ712739A (en) * | 2013-03-30 | 2021-07-30 | Polyphor Ag | Beta-hairpin peptidomimetics |
NZ712736A (en) * | 2013-03-30 | 2021-07-30 | Polyphor Ag | Beta-hairpin peptidomimetics |
CN107001426A (en) * | 2014-09-30 | 2017-08-01 | 波利弗尔股份公司 | Beta hairpin peptide mimics |
US10259847B2 (en) | 2014-09-30 | 2019-04-16 | Polyphor Ag | Beta-hairpin peptidomimetics |
AU2016235590B2 (en) | 2015-03-23 | 2020-09-17 | Polyphor Ag | Beta-hairpin peptidomimetics |
JP6501615B2 (en) | 2015-05-27 | 2019-04-17 | キヤノン株式会社 | Liquid developer and method for producing the liquid developer |
CA3080265A1 (en) | 2017-11-10 | 2019-05-16 | Polyphor Ag | Beta-hairpin peptidomimetics |
WO2023227771A1 (en) | 2022-05-27 | 2023-11-30 | Fundación Privada Instituto De Salud Global Barcelona | Cyclic peptides with antibacterial activity against multidrug resistant (mdr) pathogens |
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