EP1313757A2 - Nucleotide sequences which code for the metr and metz genes - Google Patents

Nucleotide sequences which code for the metr and metz genes

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Publication number
EP1313757A2
EP1313757A2 EP01960503A EP01960503A EP1313757A2 EP 1313757 A2 EP1313757 A2 EP 1313757A2 EP 01960503 A EP01960503 A EP 01960503A EP 01960503 A EP01960503 A EP 01960503A EP 1313757 A2 EP1313757 A2 EP 1313757A2
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EP
European Patent Office
Prior art keywords
gene
codes
polynucleotide
methionine
amino acid
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP01960503A
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German (de)
French (fr)
Inventor
Brigitte Bathe
Walter Pfefferle
Klaus Huthmacher
Christian RÜCKERT
Jörn Kalinowski
Alfred Pühler
Michael Binder
Dieter Greissinger
Georg Thierbach
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Evonik Operations GmbH
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Degussa GmbH
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Publication date
Priority claimed from DE10109688A external-priority patent/DE10109688A1/en
Application filed by Degussa GmbH filed Critical Degussa GmbH
Publication of EP1313757A2 publication Critical patent/EP1313757A2/en
Withdrawn legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P13/00Preparation of nitrogen-containing organic compounds
    • C12P13/04Alpha- or beta- amino acids
    • C12P13/12Methionine; Cysteine; Cystine
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/34Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Corynebacterium (G)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/88Lyases (4.)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P13/00Preparation of nitrogen-containing organic compounds
    • C12P13/04Alpha- or beta- amino acids
    • C12P13/08Lysine; Diaminopimelic acid; Threonine; Valine

Definitions

  • the invention provides nucleotide sequences from coryneform bacteria which code for the metR and metZ genes and a process for the fermentative preparation of amino acids, in particular L-methionine, by attenuation of the metR and/or metZ gene.
  • L-Amino acids in particular ethionine, are used in human medicine and in the pharmaceuticals industry, in the foodstuffs industry and very particularly in animal nutrition.
  • amino acids are prepared by fermentation from strains of coryneform bacteria, in particular Corynebacterium glutamicum. Because of their great importance, work is constantly being undertaken to improve the preparation processes. Improvements to the process can relate to fermentation measures, such as, for example, stirring and supply of oxygen, or the composition of the nutrient media, such as, for example, the sugar concentration during the fermentation, or the working up to the product form by, for example, ion exchange chromatography, or the intrinsic output properties of the microorganism itself.
  • fermentation measures such as, for example, stirring and supply of oxygen
  • the composition of the nutrient media such as, for example, the sugar concentration during the fermentation
  • the working up to the product form by, for example, ion exchange chromatography or the intrinsic output properties of the microorganism itself.
  • Methods of mutagenesis, selection and mutant selection are used to improve the output properties of these microorganisms.
  • Strains which are resistant to antimetabolites or are auxotrophic for metabolites of regulatory importance and which produce amino acids, such as e.g. L-methionine, are obtained in this manner.
  • Methods of the recombinant DNA technique have also been employed for some years for improving the strain of Corynebacterium strains which produce L-amino acids, by amplifying individual amino acid biosynthesis genes and investigating the effect on the amino acid production.
  • the inventors had the object of providing new measures for improved fermentative preparation of amino acids, in particular L-methionine.
  • L-amino acids or amino acids are mentioned in the following, this means one or more amino acids, including their salts, chosen from the group consisting of L- asparagine, L-threonine, L-serine, L-glutamate, L-glycine, L-alanine, L-cysteine, L-valine, L-methionine, L- isoleucine, L-leucine, L-tyrosine, L-phenylalanine, L- histidine, L-lysine, L-tryptophan . and L-arginine.
  • the invention provides isolated polynucleotides from coryneform bacteria, which comprise the polynucleotide sequences which code for the metR and/or metZ genes, chosen from the group consisting of
  • polynucleotide which is identical to the extent of at least 70% to a polynucleotide which codes for a polypeptide which comprises the amino acid sequence of SEQ ID No. 2,
  • polynucleotide which codes for a polypeptide which comprises an amino acid sequence which is identical to the extent of at least 70% to the amino acid sequence of SEQ ID No. 3,
  • polynucleotide which is complementary to the polynucleotides of a) , b) c) or d) , and
  • polynucleotide comprising at least 15 successive nucleotides of the polynucleotide sequence of a) , b) , c) , d) or e) ,
  • polypeptides according to a) or c) preferably having the activity of the transcription activator MetR and the polypeptides according to b) or d) preferably having the activity of O-succinylhomoserine sulfhydrylase (MetZ) .
  • the invention also provides the above-mentioned polynucleotides, these preferably being DNAs which are capable of replication, comprising:
  • the invention also provides: a DNA which is capable of replication and comprises the nucleotide sequence as shown in SEQ ID No. 1,
  • polynucleotide which codes for a polypeptide which comprises the amino acid sequence as shown in SEQ ID No. 2 or SEQ ID No. 3,
  • coryneform bacteria in which the metR gene and/or the metZ gene is or are attenuated, in particular by deletion, insertion or base exchange.
  • the invention also provides polynucleotides which substantially comprise a polynucleotide sequence, which are obtainable by screening by means of hybridization of a corresponding gene library of a coryneform bacterium, which comprises the complete gene or parts thereof, with a probe which comprises the sequence of the polynucleotide according to the invention according to SEQ ID No. 1 or a fragment thereof, and isolation of the polynucleotide sequence mentioned.
  • Polynucleotides which comprise the sequences according to the invention are suitable as hybridization probes for RNA, cDNA and DNA, in order to isolate, in the full length, nucleic acids, or polynucleotides or genes which code for the transcription activator MetR and/or 0- succinylhomoserine sulfhydrylase or to isolate those nucleic acids or polynucleotides or genes which have a high similarity with the sequence of the transcription activator MetR gene and/or that of the O-succinylhomoserine sulfhydrylase gene.
  • Polynucleotides which comprise the sequences according to the invention are furthermore suitable as primers with the aid of which DNA of genes which code for the transcription activator MetR and/or O-succinylhomoserine sulfhydrylase can be prepared by the polymerase chain reaction (PCR) .
  • PCR polymerase chain reaction
  • Such oligonucleotides which serve as probes or primers comprise at least 30, preferably at least 20, very particularly preferably at least 15 successive ' nucleotides. Oligonucleotides which have a length of at least 40 or 50 nucleotides are also suitable. Oligonucleotides with a length of at least 100, 150, 200, 250 or 300 nucleotides are optionally also suitable.
  • Polynucleotide in general relates to polyribonucleotides and polydeoxyribonucleotides, it being possible for these to be non-modified RNA or DNA or modified RNA or DNA.
  • the polynucleotides according to the invention include a polynucleotide according to SEQ ID No. 1 or a fragment prepared therefrom and also those which are at least 70%, preferably at least 80% and in particular at least 90% to 95% identical to the polynucleotide according to SEQ ID No. 1 or a fragment prepared therefrom.
  • polypeptides according to the invention include the polypeptides according to SEQ ID No. 2 and SEQ ID No. 3, in particular those with the biological activity of the transcription activator MetR and of O-succinylhomoserine sulfhydrylase, and also those which are at least 70%, preferably at least 80%, and in particular which are at least 90% to 95% identical to the polypeptides according to SEQ ID No. 2 and SEQ ID No. 3 and have the activities mentioned.
  • Polypeptides are understood as meaning peptides or proteins which comprise two or more amino acids bonded via peptide bonds.
  • the invention moreover provides a process for the fermentative preparation of amino acids, in particular methionine, using coryneform bacteria which in particular already produce the amino acids, and in which the nucleotide sequences which code for the metR gene and/or for the metZ gene are attenuated, in particular eliminated or expressed at a low level.
  • the term "attenuation" in this connection describes the reduction or elimination of the intracellular activity of one or more enzymes (proteins) in a microorganism which are coded by the corresponding DNA, for example by using a weak promoter or using a gene or allele which codes for a corresponding enzyme with a low activity or inactivates the corresponding gene or enzyme (protein) , and optionally combining these measures.
  • the activity or concentration of the corresponding protein is in general reduced to 0 to 50%, 0 to 25%, 0 to 10% or 0 to 5% of the activity or concentration of the wild-type protein.
  • the microorganisms which the present invention provides can prepare L-amino acids, in particular methionine, from glucose, sucrose, lactose, fructose, maltose, molasses, starch, cellulose or from glycerol and ethanol. They can be representatives of coryneform bacteria, in particular of the genus Corynebacteriu . Of the genus Corynebacterium, there may be mentioned in particular the species Corynebacterium glutamicum, which is known among experts for its ability to produce L-amino acids.
  • Suitable strains of the genus Corynebacterium in particular of the species Corynebacterium glutamicum (C. glutamicum) , are in particular the known wild-type strains Corynebacterium glutamicum ATCC13032 Corynebacterium acetoglutamicu ATCC15806 Corynebacterium acetoacidophilum ATCC13870 Corynebacterium melassecola ATCC17965 Corynebacterium thermoaminogenes FERM BP-1539 Brevibacterium flavum ATCC14067 Brevibacterium lactofermentum ATCC13869 and Brevibacterium divaricatum ATCC14020
  • L-amino acid-producing mutants or strains prepared therefrom such as, for example, the L-methionine-producing strain
  • E. coli Escherichia coli
  • the setting up of gene libraries is described in generally known textbooks and handbooks. The textbook by Winnacker: Gene und Klone, Amsterdam Einf ⁇ hrung in die Gentechnologie (Verlag Chemie, Weinheim, Germany, 1990) , or the handbook by Sambrook et al.: Molecular Cloning, A Laboratory Manual (Cold Spring Harbor Laboratory Press, 1989) may be mentioned as an example.
  • a well-known gene library is that of the E. coli K-12 strain W3110 set up in ⁇ vectors by Kohara et al.
  • plasmids such as pBR322 (Bolivar, Life Sciences, 25, 807-818 (1979)) or p ⁇ C9 (Vieira et al., 1982, Gene, 19:259-268).
  • Suitable hosts are, in particular, those E. coli strains which are restriction- and recombination-defective. An example of these is the strain DH5 ⁇ mcr, which has been described by Grant et al. (Proceedings of the National Academy of Sciences USA, 87 (1990) 4645-4649) .
  • the long DNA fragments cloned with the aid of cosmids can in turn be subcloned in the usual vectors suitable for sequencing and then sequenced, as is described e.g. by Sanger et al. (Proceedings of the National Academy of Sciences of the United States of America, 74:5463-5467, 1977).
  • the resulting DNA sequences can then be investigated with known algorithms or sequence analysis programs, such as e.g. that of Staden (Nucleic Acids Research 14, 217- 232(1986)), that of Marck (Nucleic Acids Research 16, 1829- 1836 (1988)) or the GCG program of Butler (Methods of Biochemical Analysis 39, 74-97 (1998)).
  • known algorithms or sequence analysis programs such as e.g. that of Staden (Nucleic Acids Research 14, 217- 232(1986)), that of Marck (Nucleic Acids Research 16, 1829- 1836 (1988)) or the GCG program of Butler (Methods of Biochemical Analysis 39, 74-97 (1998)).
  • Coding DNA sequences which result from SEQ ID No. 1 by the degeneracy of the genetic code are also a constituent of the invention.
  • Conservative amino acid exchanges such as e.g. exchange of glycine for alanine or of aspartic acid for glutamic acid in proteins, are furthermore known among experts as "sense mutations" which do not lead to a fundamental change in the activity of the protein, i.e. are of neutral function. It is furthermore known that changes on the N and/or C terminus of a protein cannot substantially impair or can even stabilize the function thereof. Information in this context can be found by the expert, inter alia, in Ben-Bassat et al.
  • DNA sequences which hybridize with SEQ ID No. 1 or parts of SEQ ID No. 1 are a constituent of the invention.
  • DNA sequences which are prepared by the polymerase chain reaction (PCR) using primers which result from SEQ ID No. 1 are a constituent of the invention.
  • PCR polymerase chain reaction
  • Such oligonucleotides typically have a length of at least 15 nucleotides.
  • the hybridization takes place under stringent conditions, i.e. only hybrids in which the probe and target sequence, i.e. the polynucleotides treated with the probe, are at least 70% identical are formed. It is known that the stringency of the hybridization, including the washing steps, is influenced or determined by varying the buffer composition, the temperature and the salt concentration. The hybridization reaction is preferably carried out under a relatively low stringency compared with the washing steps (Hybaid Hybridisation Guide, Hybaid Limited, Teddington, UK, 1996) .
  • a 5x SSC buffer at a temperature of approx. 50 - 68°C, for example, can be employed for the hybridization reaction.
  • Probes can also hybridize here with polynucleotides which are less than 70% identical to the sequence of the probe. Such hybrids are less stable and are removed by washing under stringent conditions. This can be achieved, for example, by lowering the salt concentration to 2x SSC and optionally subsequently 0.5x SSC (The DIG System User's Guide for Filter Hybridisation, Boehringer Mannheim, Mannheim, Germany, 1995) a temperature of approx. 50 - 68°C being established. It is optionally possible to lower the salt concentration to 0. Ix SSC.
  • Polynucleotide fragments which are, for example, at least 70% or at least 80% or at least 90% to 95% identical to the sequence of the probe employed can be isolated by increasing the hybridization temperature stepwise from 50 to 68°C in steps of approx. 1 - 2°C. Further instructions on hybridization are obtainable on the market in the form of so-called kits (e.g. DIG Easy Hyb from Roche Diagnostics GmbH, Mannheim, Germany, Catalogue No. 1603558) .
  • kits e.g. DIG Easy Hyb from Roche Diagnostics GmbH, Mannheim, Germany, Catalogue No. 1603558
  • PCR polymerase chain reaction
  • coryneform bacteria produce amino acids, in particular L-methionine, in an improved manner after attenuation of the metR and/or metZ gene.
  • either the expression of the metR and/or of the metZ gene or the catalytic properties of the enzyme proteins can be reduced or eliminated.
  • the two measures can optionally be combined.
  • the reduction in gene expression can take place by suitable culturing or by genetic modification (mutation) of the signal structures of gene expression.
  • Signal structures of gene expression are, for example, repressor genes, activator genes, operators, promoters, attenuators, ribosome binding sites, the start codon and terminators.
  • the expert can find information on this e.g. in the patent application WO 96/15246, in Boyd and Murphy (Journal of Bacteriology 170: 5949 (1988)), in Voskuil and Chambliss (Nucleic Acids Research 26: 3548 (1998), in Jensen and Hammer (Biotechnology and Bioengineering 58: 191 (1998)), in Patek et al.
  • a central part of the coding region of the gene of interest is cloned in a plasmid vector which can replicate in a host (typically E. coli), but not in C. glutamicum.
  • Possible vectors are, for example, pSUP301 (Simon et al., Bio/Technology 1, 784-791 (1983)), pKl ⁇ mob or pK19mob (Schafer et al., Gene 145, 69- 73 (1994)), pKl ⁇ mobsacB or pK19mobsacB (Jager et al., Journal of Bacteriology 174: 5462-65 (1992)), pGEM-T (Promega corporation, Madison, WI, USA), pCR2.1-TOPO (Shuman (1994).
  • the plasmid vector which contains the central part of the coding region of the gene is then transferred into the desired strain of C. glutamicum by conjugation or transformation.
  • the method of conjugation is described, for example, by Schafer et al. (Applied and Environmental Microbiology 60, 756-759 (1994)). Methods for transformation are described, for example, by Thierbach et al.
  • a mutation such as e.g. a deletion, insertion or a base exchange
  • the allele prepared is in turn cloned in a vector which is not replicative for C. glutamicum and this is then transferred into the desired host of C. glutamicum by transformation or conjugation.
  • a first "cross over” event which effects integration
  • a suitable second "cross-over” event which effects excision in the target gene or in the target sequence
  • the incorporation of the mutation or of the allele is achieved.
  • This method was used, for example, by Peters-Wendisch et al. (Microbiology 144, 915 - 927 (1998)) to eliminate the pyc gene of C. glutamicum by a deletion.
  • a deletion, insertion or a base exchange can be incorporated into the metR gene or the metZ gene in this manner.
  • enhancement in this connection describes the increase in the intracellular activity of one or more enzymes (proteins) in a microorganism which are coded by the corresponding DNA, for example by increasing the number of copies of the gene or genes, using a potent promoter or using a gene or allele which codes for a corresponding enzyme (protein) having a high activity, and optionally combining these measures.
  • the activity or concentration of the corresponding protein is in general increased by at least 10%, 25%, 50%, 75%, 100%, 150%, 200%, 300%, 400% or 500%, up to a maximum of 1000% or 2000%, based on the starting microorganism.
  • L- methionine in addition to the attenuation of the metR and/or metZ gene, for one or more genes chosen from the group consisting of
  • the invention also provides the microorganisms prepared according to the invention, and these can be cultured continuously or discontinuously in the batch process (batch culture) or in the fed batch (feed process) or repeated fed batch process (repetitive feed process) for the purpose of production of L-amino acids, in particular L-methionine.
  • batch culture batch culture
  • feed process fed batch
  • repetitive feed process repetition feed process
  • the culture medium to be used must meet the requirements of the particular strains in a suitable manner. Descriptions of culture media for various microorganisms are contained in the handbook “Manual of Methods for General Bacteriology” of the American Society for Bacteriology (Washington D.C., USA, 1981).
  • Sugars and carbohydrates such as e.g. glucose, sucrose, lactose, fructose, maltose, molasses, starch and cellulose, co ⁇ " O CO CO 3 £U 3 ⁇ CO 3 rt ⁇ ⁇ v TJ ⁇ Hi O ⁇ ⁇ TJ CO ⁇ O H- ⁇ o O Hi o o ⁇ ⁇ 0 ) ⁇ H- ⁇ ⁇ P- O ⁇ ⁇ O l- 1 - " 1-5 0> o H 01 to ⁇ ⁇ H- ⁇ H ⁇ O i-s H- 1 O ⁇ - ⁇ -
  • the product can be absorbed on to an organic or inorganic carrier substance which is known and conventional in feedstuffs processing, such as, for example, silicas, silicates, grits, brans, meals, starches, sugars or others, and/or mixed and stabilized with conventional thickeners or binders.
  • feedstuffs processing such as, for example, silicas, silicates, grits, brans, meals, starches, sugars or others, and/or mixed and stabilized with conventional thickeners or binders.
  • the product can be brought into a state in which it is stable to digestion by animal stomachs, in particular the stomach of ruminants, by coating processes ("coating") using film-forming agents, such as, for example, metal carbonates, silicas, silicates, alginates, stearates, starches, gums and cellulose ethers, as described in DE-C- 4100920.
  • film-forming agents such as, for example, metal carbonates, silicas, silicates, alginates, stearates, starches, gums and cellulose ethers, as described in DE-C- 4100920.
  • the animal feedstuffs additive according to the invention comprises at least the predominant proportion of the further substances, in particular organic substances, which are formed or added and are present in solution in the fermentation broth, where these have not been separated off by suitable processes.
  • the biomass can be separated off to the extent of up to 70%, preferably up to 80%, preferably up to 90%, preferably up to 95%, and particularly preferably up to 100%.
  • up to 20% of the biomass preferably up to 15%, preferably up to 10%, preferably up to 5%, particularly preferably no biomass is separated off.
  • organic substances include organic by-products which are optionally produced, in addition to the L-methionine, and optionally discharged by the microorganisms employed in the fermentation.
  • L-amino acids chosen from the group consisting of L-lysine, L-valine, L-threonine, L- alanine or L-tryptophan.
  • vitamins chosen from the group consisting of vitamin Bl (thiamine) , vitamin B2 (riboflavin) , vitamin B5 (pantothenic acid), vitamin B6 (pyridoxine) , vitamin B12 (cyanocobalamin) , nicotinic acid/nicotinamide and vitamin E (tocopherol) .
  • organic substances including L-methionine and/or D- methionine and/or the racemic mixture D, L-methionine, can also be added, depending on requirements, as a concentrate or pure substance in solid or liquid form during a suitable process step.
  • organic substances mentioned can be added individually or as mixtures to the resulting or concentrated fermentation broth, or also during the drying or granulation process. It is likewise possible to add an organic substance or a mixture of several organic substances to the fermentation broth and a further organic substance or a further mixture of several organic substances during a later process step, for example granulation.
  • the product described above is suitable as a feedstuffs additive, i.e. feed additive, for animal nutrition.
  • the L-methionine content of the animal feedstuffs additive is conventionally 1 wt.% to 80 wt.%, preferably 2 wt.% to 80 wt.%, particularly preferably 4 wt.% to 80 wt.%, and very particularly preferably 8 wt.% to 80 wt.%, based on the dry weight of the animal feedstuffs additive.
  • the water content of the feedstuffs additive is conventionally up to 5 wt.%, preferably up to 4 wt.%, and particularly preferably less than 2 wt . % .
  • the invention accordingly also provides a process for the preparation of an L-methionine-containing animal feedstuffs additive from fermentation broths, which comprises the steps
  • auxiliary substances chosen from the group consisting of silicas, silicates, stearates, grits and bran to the substances obtained according to a) to d) for stabilization and to increase the storability; or
  • the process according to the invention is used for the fermentative preparation of amino acids, in particular L- methionine.
  • composition of the usual nutrient media such as LB or TY medium, can also be found in the handbook by Sambrook et al.
  • Chromosomal DNA from Corynebacterium glutamicum ATCC 13032 was isolated as described by Tauch et al. (1995, Plasmid 33:168-179) and partly cleaved with the restriction enzyme Sau3AI (Amersham Pharmacia, Freiburg, Germany, Product Description Sau3AI, Code no. 27-0913-02) .
  • the DNA fragments were dephosphorylated with shrimp alkaline phosphatase (Roche Diagnostics GmbH, Mannheim, Germany, Product Description SAP, Code no. 1758250) .
  • the DNA of the cosmid vector SuperCosl (Wahl et al.
  • the cosmid DNA was then cleaved with the restriction enzyme Ba HI (Amersham Pharmacia, Freiburg, Germany, Product Description BamHI, Code no. 27-0868-04) .
  • the cosmid DNA treated in this manner was mixed with the treated ATCC13032 DNA and the batch was treated with T4 DNA ligase (Amersham Pharmacia, Freiburg, Germany, Product Description T4-DNA- Ligase, Code no.27-0870-04) .
  • the ligation mixture was then packed in phages with the aid of Gigapack II XL Packing Extract (Stratagene, La Jolla, USA, Product Description Gigapack II XL Packing Extract, Code no. 200217).
  • the cells were taken up in 10 mM MgS0 4 and mixed with an aliquot of the phage suspension.
  • the infection and titering of the cosmid library were carried out as described by Sambrook et al. (1989, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor) , the cells being plated out on LB agar (Lennox, 1955, Virology, 1:190) with 100 mg/1 ampicillin. After incubation overnight at 37°C, recombinant individual clones were selected.
  • the cosmid DNA of an individual colony was isolated with the Qiaprep Spin Miniprep Kit (Product No. 27106, Qiagen, Hilden, Germany) in accordance with the manufacturer's instructions and partly cleaved with the restriction enzyme Sau3AI (Amersham Pharmacia, Freiburg, Germany, Product Description Sau3AI, Product No. 27-0913-02) .
  • the DNA fragments were dephosphorylated with shrimp alkaline phosphatase (Roche Diagnostics GmbH, Mannheim, Germany, Product Description SAP, Product No. 1758250) .
  • the cosmid fragments in the size range of 1500 to 2000 bp were isolated with the QiaExII Gel Extraction Kit (Product No. 20021, Qiagen, Hilden, Germany) .
  • the DNA of the sequencing vector pZero-1 obtained from Invitrogen (Groningen, The Netherlands, Product Description Zero Background Cloning Kit, Product No. K2500-01) was cleaved with the restriction enzyme BamHI (Amersham Pharmacia, Freiburg, Germany, Product Description BamHI, Product No. 27-0868-04) .
  • the ligation of the cosmid fragments in the sequencing vector pZero-1 was carried out as described by Sambrook et al. (1989, Molecular Cloning: A laboratory Manual, Cold Spring Harbor) , the DNA mixture being incubated overnight with T4 ligase (Pharmacia Biotech, Freiburg, Germany) . This ligation mixture was then electroporated (Tauch et al.
  • the plasmid preparation of the recombinant clones was carried out with Biorobot 9600 (Product No. 900200, Qiagen, Hilden, Germany) .
  • the sequencing was carried out by the dideoxy chain termination method of Sanger et al. (1977, Proceedings of the National Academy of Sciences U.S.A., 74:5463-5467) with modifications according to Zimmermann et al. (1990, Nucleic Acids Research, 18:1067).
  • the "RR dRhodamin Terminator Cycle Sequencing Kit” from PE Applied Biosystems Product No. 403044, Rothstadt, Germany) was used.
  • the raw sequence data obtained were then processed using the Staden program package (1986, Nucleic Acids Research, 14:217-231) version 97-0.
  • the individual sequences of the pZerol derivatives were assembled to a continuous contig.
  • the computer-assisted coding region analysis was prepared with the XNIP program (Staden, 1986, Nucleic Acids Research, 14:217-231).
  • the resulting nucleotide sequence is shown in SEQ ID No. 1. Analysis of the nucleotide sequence showed two open reading frames of 567 base pairs and 1146 base pairs, which were called the metR gene and metZ gene. The metR gene codes for a protein of 189 amino acids, the metZ gene codes for a protein of 382 amino acids.
  • chromosomal DNA was isolated from the strain ATCC13032 by the method of Tauch et al. (Plasmid 33:168-179 (1995) ) .
  • the oligonucleotides described below were chosen for generation of the metR-metZ deletion allele by means of the polymerase chain reaction (PCR) by the gene Soeing method (Horton, Molecular Biotechnology 3: 93-98 (1995)).
  • orfR 20 see also SEQ ID No. 4 :
  • orfRmetZ del (see also SEQ ID No. 5) :
  • the primers shown were synthesized by MWG Biotech (Ebersberg, Germany) and the PCR reaction was carried out using Pfu polymerase (Stratagene, Product. No. 600135, La Jolla, USA) and a PTC 100 Thermocycler (MJ Research Inc., Waltham, USA) .
  • the primers orfR 20 and metZ 21 contain in each case an inserted cleavage site for the restriction enzyme EcoRI, which are marked by underlining in the nucleotide sequence shown above.
  • the primer orfRmetZ del is composed of two regions of the nucleotide sequence, one' of which bonds in the "upstream” region of metR and includes the first two nucleotides of the start codon ATG, and the other bonds after the stop codon of metZ in the "downstream” region thereof.
  • amplification product 402 bp in size contains the "upstream" region of the met R gene including the first two nucleotides of the start codon ATG, and additionally a 20 bp extension, appended with the oligonucleotide orfRmetZ del, which corresponds to a part of the nucleotide sequence of the "downstream" region of metZ.
  • the amplification product was isolated from the agarose gel with the QiaExII Gel Extraction Kit (Product No. 20021, Qiagen, Hilden, Germany) . It was called metRmetZ del fragment 1 and is shown in SEQ ID No. 7.
  • metRmetZ deletion derivative 982 bp in size was produced with the primer metZ 21 and the purified amplification product metRmetZ del fragment 1, which can bond by means of the 20 bp extension from the oligonucleotide orfRmetZ del in the "downstream" region of metZ to the DNA and function there as a primer. It comprises, between the two EcoRI cleavage sites appended to the primers, 368 bp of the "upstream region" of the metR gene, the first two nucleotides of the start codon ATG and 588 bp of the "downstream" region of the metZ gene, starting with the fourth nucleotide after the stop codon of the metZ gene.
  • metRmetZ del fragment 2 It was called metRmetZ del fragment 2 and is shown in SEQ ID No. 8.
  • the 982 bp metRmetZ deletion derivative obtained in example 3 was incorporated by means of deletion mutagenesis with the aid of the sacB system described by Schafer et al., Gene, 14, 69-73 (1994) into the chromosome of C. glutamicum. This system enables the expert to identify or select allele exchanges which take place by homologous recombination. ... . . .
  • the metRmetZ deletion derivative 982 bp in size obtained in example 3 was cleaved with the restriction endonuclease EcoRI and then isolated from the agarose gel with the QiaExII Gel Extraction Kit (Product No. 20021, Qiagen, Hilden, Germany) and used for ligation with the mobilizable cloning vector pKl ⁇ mobsacB described by Schafer et al., Gene, 14, 69-73 (1994) . This was cleaved beforehand with the restriction enzyme EcoRI, subsequently dephosphorylated with shrimp, alkaline phosphatase (Roche Diagnostics GmbH, Mannheim, Germany, Product Description SAP, Product No.
  • plasmid-carrying cells were made by plating out the transformation batch on LB agar (Sambrock et al., Molecular Cloning: A Laboratory Manual, 2 nd Ed., Cold Spring Harbor, New York, 1989), which had been supplemented with 25 mg/1 kanamycin.
  • Plasmid DNA was isolated from a transformant with the aid of the QIAprep Spin Miniprep Kit from Qiagen and the cloned lrp deletion allele was verified by means of sequencing by MWG Biotech (Ebersberg, Germany) .
  • the plasmid was called pK18mobsacBdeltametRmetZ and is shown in figure 1.
  • the vector pKl ⁇ mobsacBdeltametRmetZ mentioned in example 4 was electroporated by the electroporation method of Tauch et al.,(1989 FEMS Microbiology Letters 123: 343-347) in the strain C. glutamicum ATCC13032.
  • the vector cannot replicate independently in ATCC13032 and is retained in the cell only if it has integrated into the chromosome.
  • the plasmid pKl ⁇ mobsacB contains a copy of the sacB gene, which converts sucrose into levan sucrase, which is toxic to C. glutamicum. Only those clones in which the pKl ⁇ mobsacBdeltametRmetZ integrated has been excised again therefore grow on LB agar with sucrose. In the excision, together with the plasmid either the complete chromosomal copy of the metR and metZ genes can be excised, or the metRmetZ deletion derivative.
  • the plasmid pKl ⁇ mobsacBdeltametRmetZ was marked by the method of "The DIG System Users Guide for Filter Hybridization" of Boehringer Mannheim GmbH (Mannheim, Germany, 1993) using the DIG hybridization kit from Boehringer. Chromosomal DNA of a potential deletion mutant was isolated by the method of Eikmanns et al. (Microbiology 140: 1817-1628 (1994)) and in each case cleaved with the restriction enzymes Hindlll and EcoRI in separate batches-.
  • the fragments formed were separated by agarose gel electrophoresis and hybridized at 68°C with the Dig hybridization kit from Boehringer. With the aid of the fragments formed, it could be shown that the strain ATCC13032 has lost its copies of the metR and metZ genes, and instead the region from the 3rd nucleotide of the metR gene up to and including the 3rd nucleotide after the metZ gene is deleted.
  • the strain was called C. glutamicum ATCC13032deltametRmetZ.
  • the C. glutamicum strain ATCCl3032deltametRmetZ obtained in example 4 was cultured in a nutrient medium suitable for the production of methionine and the methionine content in the culture supernatant was determined.
  • the strain was first incubated on a brain-heart agar plate for 24 hours at 33°C. Starting from this agar plate culture, a preculture was seeded (10 ml medium in a 100 ml conical flask) . The medium MM was used as the medium for the preculture.
  • MOPS morpholinopropanesulfonic acid
  • Vitamin B12 (sterile-filtered) 0.02 mg/1
  • the CSL, MOPS and the salt solution were brought to pH 7 with aqueous ammonia and autoclaved.
  • the sterile substrate and vitamin solutions were then added, as well as the CaC0 3 autoclaved in the dry state.
  • the preculture was incubated for 16 hours at 33°C at 240 rpm on a shaking machine.
  • a main culture was seeded from this preculture such that the initial OD ( 660 nm) of the main culture was 0.1.
  • Medium MM was also used for the main culture.
  • Culturing is carried out in a 10 ml volume in a 100 ml conical flask with baffles. Culturing was carried out at 33°C and 80% atmospheric humidity.
  • the OD was determined at a measurement wavelength of 660 nm with a Biomek 1000 (Beckmann Instruments GmbH, Kunststoff) .
  • the amount of methionine formed was determined with an amino acid analyzer from Eppendorf- BioTronik (Hamburg, Germany) by ion exchange chromatography and post-column derivation with ninhydrin detection.
  • Figure 1 Map of the plasmid pKl ⁇ mobsacBdeltametRmetZ.

Abstract

The invention relates to polynucleotides from coryneform bacteria which code for the metR and/or metZ genes and comprise polynucleotide sequences, chosen from the group consisting of a) polynucleotide which is identical to the extent of at least 70 % to a polynucleotide which codes for a polypeptide which comprises the amino acid sequence of SEQ ID No. 2, b) polynucleotide which is identical to the extent of at least 70 % to a polynucleotide which codes for a polypeptide which comprises the amino acid sequence of SEQ ID No. 3, c) polynucleotide which codes for a polypeptide which comprises an amino acid sequence which is identical to the extent of at least 70 % to the amino acid sequence of SEQ ID No. 2, d) polynucleotide which codes for a polypeptide which comprises an amino acid sequence which is identical to the extent of at least 70 % to the amino acid sequence of SEQ ID No. 3, e) polynucleotide which is complementary to the polynucleotides of a) b), c) or d), and f) polynucleotide comprising at least 15 successive nucleotides of the polynucleotide sequences of a), b), c), d) or e) and a process for the fermentative preparation of L-amino acids using coryneform bacteria in which at least the metR gene and/or the metZ gene is present in attenuated form, and the use of polynucleotides which comprise the sequences according to the invention as hybridization probes.

Description

Nucleotide sequences which code for the metR and metZ genes
Field of the Invention
The invention provides nucleotide sequences from coryneform bacteria which code for the metR and metZ genes and a process for the fermentative preparation of amino acids, in particular L-methionine, by attenuation of the metR and/or metZ gene.
Prior Art
L-Amino acids, in particular ethionine, are used in human medicine and in the pharmaceuticals industry, in the foodstuffs industry and very particularly in animal nutrition.
It is known that amino acids are prepared by fermentation from strains of coryneform bacteria, in particular Corynebacterium glutamicum. Because of their great importance, work is constantly being undertaken to improve the preparation processes. Improvements to the process can relate to fermentation measures, such as, for example, stirring and supply of oxygen, or the composition of the nutrient media, such as, for example, the sugar concentration during the fermentation, or the working up to the product form by, for example, ion exchange chromatography, or the intrinsic output properties of the microorganism itself.
Methods of mutagenesis, selection and mutant selection are used to improve the output properties of these microorganisms. Strains which are resistant to antimetabolites or are auxotrophic for metabolites of regulatory importance and which produce amino acids, such as e.g. L-methionine, are obtained in this manner.
Methods of the recombinant DNA technique have also been employed for some years for improving the strain of Corynebacterium strains which produce L-amino acids, by amplifying individual amino acid biosynthesis genes and investigating the effect on the amino acid production.
Object of the Invention
The inventors had the object of providing new measures for improved fermentative preparation of amino acids, in particular L-methionine.
Summary of the Invention
Where L-amino acids or amino acids are mentioned in the following, this means one or more amino acids, including their salts, chosen from the group consisting of L- asparagine, L-threonine, L-serine, L-glutamate, L-glycine, L-alanine, L-cysteine, L-valine, L-methionine, L- isoleucine, L-leucine, L-tyrosine, L-phenylalanine, L- histidine, L-lysine, L-tryptophan. and L-arginine.
When L-methionine or methionine are mentioned in the following, the salts, such as e.g. methionine hydrochloride or methionine sulfate are also meant by this.
The invention provides isolated polynucleotides from coryneform bacteria, which comprise the polynucleotide sequences which code for the metR and/or metZ genes, chosen from the group consisting of
a) polynucleotide which is identical to the extent of at least 70% to a polynucleotide which codes for a polypeptide which comprises the amino acid sequence of SEQ ID No. 2,
b) polynucleotide which is identical to the extent of at least 70% to a polynucleotide which codes for a polypeptide which comprises the amino acid sequence of SEQ ID No. 3, c) polynucleotide which codes for a polypeptide which comprises an amino acid sequence which is identical to the extent of at least 70% to the amino acid sequence of SEQ ID No. 2,
d) polynucleotide which codes for a polypeptide which comprises an amino acid sequence which is identical to the extent of at least 70% to the amino acid sequence of SEQ ID No. 3,
e) polynucleotide which is complementary to the polynucleotides of a) , b) c) or d) , and
f) polynucleotide comprising at least 15 successive nucleotides of the polynucleotide sequence of a) , b) , c) , d) or e) ,
the polypeptides according to a) or c) preferably having the activity of the transcription activator MetR and the polypeptides according to b) or d) preferably having the activity of O-succinylhomoserine sulfhydrylase (MetZ) .
The invention also provides the above-mentioned polynucleotides, these preferably being DNAs which are capable of replication, comprising:
(i) the nucleotide sequence shown in SEQ ID No. 1, or
(ii) at least one sequence which corresponds to sequence (i) within the range of the degeneration of the genetic code, or
(iii) at least one sequence which hybridizes with the sequences complementary to sequences (i) or (ii) , and optionally
(iv) sense mutations of neutral function in (i) .
The invention also provides: a DNA which is capable of replication and comprises the nucleotide sequence as shown in SEQ ID No. 1,
a polynucleotide which codes for a polypeptide which comprises the amino acid sequence as shown in SEQ ID No. 2 or SEQ ID No. 3,
a vector containing parts of the polynucleotide according to the invention, but at least 15 successive nucleotides of the sequence claimed
and coryneform bacteria in which the metR gene and/or the metZ gene is or are attenuated, in particular by deletion, insertion or base exchange.
The invention also provides polynucleotides which substantially comprise a polynucleotide sequence, which are obtainable by screening by means of hybridization of a corresponding gene library of a coryneform bacterium, which comprises the complete gene or parts thereof, with a probe which comprises the sequence of the polynucleotide according to the invention according to SEQ ID No. 1 or a fragment thereof, and isolation of the polynucleotide sequence mentioned.
Detailed Description of the Invention
Polynucleotides which comprise the sequences according to the invention are suitable as hybridization probes for RNA, cDNA and DNA, in order to isolate, in the full length, nucleic acids, or polynucleotides or genes which code for the transcription activator MetR and/or 0- succinylhomoserine sulfhydrylase or to isolate those nucleic acids or polynucleotides or genes which have a high similarity with the sequence of the transcription activator MetR gene and/or that of the O-succinylhomoserine sulfhydrylase gene. Polynucleotides which comprise the sequences according to the invention are furthermore suitable as primers with the aid of which DNA of genes which code for the transcription activator MetR and/or O-succinylhomoserine sulfhydrylase can be prepared by the polymerase chain reaction (PCR) .
Such oligonucleotides which serve as probes or primers comprise at least 30, preferably at least 20, very particularly preferably at least 15 successive' nucleotides. Oligonucleotides which have a length of at least 40 or 50 nucleotides are also suitable. Oligonucleotides with a length of at least 100, 150, 200, 250 or 300 nucleotides are optionally also suitable.
"Isolated" means separated out of its natural environment.
"Polynucleotide" in general relates to polyribonucleotides and polydeoxyribonucleotides, it being possible for these to be non-modified RNA or DNA or modified RNA or DNA.
The polynucleotides according to the invention include a polynucleotide according to SEQ ID No. 1 or a fragment prepared therefrom and also those which are at least 70%, preferably at least 80% and in particular at least 90% to 95% identical to the polynucleotide according to SEQ ID No. 1 or a fragment prepared therefrom.
The polypeptides according to the invention include the polypeptides according to SEQ ID No. 2 and SEQ ID No. 3, in particular those with the biological activity of the transcription activator MetR and of O-succinylhomoserine sulfhydrylase, and also those which are at least 70%, preferably at least 80%, and in particular which are at least 90% to 95% identical to the polypeptides according to SEQ ID No. 2 and SEQ ID No. 3 and have the activities mentioned. "Polypeptides" are understood as meaning peptides or proteins which comprise two or more amino acids bonded via peptide bonds.
The invention moreover provides a process for the fermentative preparation of amino acids, in particular methionine, using coryneform bacteria which in particular already produce the amino acids, and in which the nucleotide sequences which code for the metR gene and/or for the metZ gene are attenuated, in particular eliminated or expressed at a low level.
The term "attenuation" in this connection describes the reduction or elimination of the intracellular activity of one or more enzymes (proteins) in a microorganism which are coded by the corresponding DNA, for example by using a weak promoter or using a gene or allele which codes for a corresponding enzyme with a low activity or inactivates the corresponding gene or enzyme (protein) , and optionally combining these measures.
By attenuation measures, the activity or concentration of the corresponding protein is in general reduced to 0 to 50%, 0 to 25%, 0 to 10% or 0 to 5% of the activity or concentration of the wild-type protein.
The microorganisms which the present invention provides can prepare L-amino acids, in particular methionine, from glucose, sucrose, lactose, fructose, maltose, molasses, starch, cellulose or from glycerol and ethanol. They can be representatives of coryneform bacteria, in particular of the genus Corynebacteriu . Of the genus Corynebacterium, there may be mentioned in particular the species Corynebacterium glutamicum, which is known among experts for its ability to produce L-amino acids.
Suitable strains of the genus Corynebacterium, in particular of the species Corynebacterium glutamicum (C. glutamicum) , are in particular the known wild-type strains Corynebacterium glutamicum ATCC13032 Corynebacterium acetoglutamicu ATCC15806 Corynebacterium acetoacidophilum ATCC13870 Corynebacterium melassecola ATCC17965 Corynebacterium thermoaminogenes FERM BP-1539 Brevibacterium flavum ATCC14067 Brevibacterium lactofermentum ATCC13869 and Brevibacterium divaricatum ATCC14020
or L-amino acid-producing mutants or strains prepared therefrom, such as, for example, the L-methionine-producing strain
Corynebacterium glutamicum ATCC21608.
The new metR and metZ genes from C. glutamicum which code for the transcription activator MetR and the enzyme O- succinylhomoserine sulfhydrylase have been isolated.
To isolate the metR gene, the metZ gene or also other genes of C. glutamicum, a gene library of this microorganism is first set up in Escherichia coli (E. coli) . The setting up of gene libraries is described in generally known textbooks and handbooks. The textbook by Winnacker: Gene und Klone, Eine Einfϋhrung in die Gentechnologie (Verlag Chemie, Weinheim, Germany, 1990) , or the handbook by Sambrook et al.: Molecular Cloning, A Laboratory Manual (Cold Spring Harbor Laboratory Press, 1989) may be mentioned as an example. A well-known gene library is that of the E. coli K-12 strain W3110 set up in λ vectors by Kohara et al. (Cell 50, 495 -508 (1987)). Bathe et al. (Molecular and General Genetics, 252:255-265, 1996) describe a gene library of C. glutamicum ATCC13032, which was set up with the aid of the cosmid vector SuperCos I (Wahl et al., 1987, Proceedings of the National Academy of Sciences USA, 84:2160-2164) in the E. coli K-12 strain NM554 (Raleigh et al., 1988, Nucleic Acids Research 16:1563-1575). Bormann et al. (Molecular Microbiology 6(3), 317-326) (1992)) in turn describe a gene library of C. glutamicum ATCC13032 using the cosmid pHC79 (Hohn and Collins, Gene 11, 291-298 (1980)). To prepare a gene library of C. glutamicum in E. coli it is also possible to use plasmids such as pBR322 (Bolivar, Life Sciences, 25, 807-818 (1979)) or pϋC9 (Vieira et al., 1982, Gene, 19:259-268). Suitable hosts are, in particular, those E. coli strains which are restriction- and recombination-defective. An example of these is the strain DH5αmcr, which has been described by Grant et al. (Proceedings of the National Academy of Sciences USA, 87 (1990) 4645-4649) . The long DNA fragments cloned with the aid of cosmids can in turn be subcloned in the usual vectors suitable for sequencing and then sequenced, as is described e.g. by Sanger et al. (Proceedings of the National Academy of Sciences of the United States of America, 74:5463-5467, 1977).
The resulting DNA sequences can then be investigated with known algorithms or sequence analysis programs, such as e.g. that of Staden (Nucleic Acids Research 14, 217- 232(1986)), that of Marck (Nucleic Acids Research 16, 1829- 1836 (1988)) or the GCG program of Butler (Methods of Biochemical Analysis 39, 74-97 (1998)).
The new DNA sequence of C. glutamicum which codes for the metR and metZ genes and which, as SEQ ID No. 1, is a constituent of the present invention has been found. The amino acid sequence of the corresponding proteins has furthermore been derived from the present DNA sequence by the methods described above. The resulting amino acid sequences of the metR and metZ gene products are shown in SEQ ID No. 2 and 3.
Coding DNA sequences which result from SEQ ID No. 1 by the degeneracy of the genetic code are also a constituent of the invention. Conservative amino acid exchanges, such as e.g. exchange of glycine for alanine or of aspartic acid for glutamic acid in proteins, are furthermore known among experts as "sense mutations" which do not lead to a fundamental change in the activity of the protein, i.e. are of neutral function. It is furthermore known that changes on the N and/or C terminus of a protein cannot substantially impair or can even stabilize the function thereof. Information in this context can be found by the expert, inter alia, in Ben-Bassat et al. (Journal of Bacteriology 169:751-757 (1987)), in O'Regan et al. (Gene 77:237-251 (1989)), in Sahin-Toth et al. (Protein Sciences 3:240-247 (1994)), in Hochuli et al. (Bio/Technology 6:1321-1325 (1988)) and in known textbooks of genetics and molecular biology. Amino acid sequences which result in a corresponding manner from SEQ ID No. 2 or SEQ ID No. 3 are also a constituent of the invention.
In the same way, DNA sequences which hybridize with SEQ ID No. 1 or parts of SEQ ID No. 1 are a constituent of the invention. Finally, DNA sequences which are prepared by the polymerase chain reaction (PCR) using primers which result from SEQ ID No. 1 are a constituent of the invention. Such oligonucleotides typically have a length of at least 15 nucleotides.
Instructions for identifying DNA sequences by means of hybridization can be found by the expert, inter alia, in the handbook "The DIG System Users Guide for Filter Hybridization" from Boehringer Mannheim GmbH (Mannheim, Germany, 1993) and in Liebl et al. (International Journal of Systematic Bacteriology (1991) 41: 255-260). The hybridization takes place under stringent conditions, i.e. only hybrids in which the probe and target sequence, i.e. the polynucleotides treated with the probe, are at least 70% identical are formed. It is known that the stringency of the hybridization, including the washing steps, is influenced or determined by varying the buffer composition, the temperature and the salt concentration. The hybridization reaction is preferably carried out under a relatively low stringency compared with the washing steps (Hybaid Hybridisation Guide, Hybaid Limited, Teddington, UK, 1996) .
A 5x SSC buffer at a temperature of approx. 50 - 68°C, for example, can be employed for the hybridization reaction. Probes can also hybridize here with polynucleotides which are less than 70% identical to the sequence of the probe. Such hybrids are less stable and are removed by washing under stringent conditions. This can be achieved, for example, by lowering the salt concentration to 2x SSC and optionally subsequently 0.5x SSC (The DIG System User's Guide for Filter Hybridisation, Boehringer Mannheim, Mannheim, Germany, 1995) a temperature of approx. 50 - 68°C being established. It is optionally possible to lower the salt concentration to 0. Ix SSC. Polynucleotide fragments which are, for example, at least 70% or at least 80% or at least 90% to 95% identical to the sequence of the probe employed can be isolated by increasing the hybridization temperature stepwise from 50 to 68°C in steps of approx. 1 - 2°C. Further instructions on hybridization are obtainable on the market in the form of so-called kits (e.g. DIG Easy Hyb from Roche Diagnostics GmbH, Mannheim, Germany, Catalogue No. 1603558) .
Instructions for amplification of DNA sequences with the aid of the polymerase chain reaction (PCR) can be found by the expert, inter alia, in the handbook by Gait: Oligonucleotide Synthesis: A Practical. Approach (IRL Press, Oxford, UK, 1984) and in Newton and Graham: PCR (Spektrum Akademischer Verlag, Heidelberg, Germany, 1994) .
It has been found that coryneform bacteria produce amino acids, in particular L-methionine, in an improved manner after attenuation of the metR and/or metZ gene.
To achieve an attenuation, either the expression of the metR and/or of the metZ gene or the catalytic properties of the enzyme proteins can be reduced or eliminated. The two measures can optionally be combined.
The reduction in gene expression can take place by suitable culturing or by genetic modification (mutation) of the signal structures of gene expression. Signal structures of gene expression are, for example, repressor genes, activator genes, operators, promoters, attenuators, ribosome binding sites, the start codon and terminators. The expert can find information on this e.g. in the patent application WO 96/15246, in Boyd and Murphy (Journal of Bacteriology 170: 5949 (1988)), in Voskuil and Chambliss (Nucleic Acids Research 26: 3548 (1998), in Jensen and Hammer (Biotechnology and Bioengineering 58: 191 (1998)), in Patek et al. (Microbiology 142: 1297 (1996)), Vasicova et al. (Journal of Bacteriology 181: 6188 (1999)) and in known textbooks of genetics and molecular biology, such as e.g. the textbook by Knippers ("Molekulare Genetik", 6th edition, Georg Thieme Verlag, Stuttgart, Germany, 1995) or that by Winnacker ("Gene und Klone", VCH Verlagsgesellschaft, Weinheim, Germany, 1990) .
Mutations which lead to a change or reduction in the catalytic properties of enzyme proteins are known from the prior art; examples which may be mentioned are the works by Qiu and Goodman (Journal of Biological Chemistry 272: 8611- 8617 (1997)), Sugimoto et al. (Bioscience Biotechnology and Biochemistry 61: 1760-1762 (1997)) and Mδckel ("Die Threonindehydratase aus Corynebacterium glutamicum: Aufhebung der allosterischen Regulation und Struktur des Enzyms", Reports from the Jϋlich Research Center, Jϋl-2906, ISSN09442952, Jϋlich, Germany, 1994) . Summarizing descriptions can be found in known textbooks of genetics and molecular biology, such as e.g. that by Hagemann ("Allgemeine Genetik", Gustav Fischer Verlag, Stuttgart, 1986) . Possible mutations are transitions, transversions, insertions and deletions. Depending on the effect of the amino acid exchange on the enzyme activity, "missense mutations" or "nonsense mutations" are referred to. Insertions or deletions of at least one base pair in a gene lead to "frame shift mutations", as a consequence of which incorrect amino acids are incorporated or translation is interrupted prematurely. Deletions of several codons typically lead to a complete loss of the enzyme activity. Instructions on generation of such mutations are prior art and can be found in known textbooks of genetics and molecular biology, such as e.g. the textbook by Knippers ("Molekulare Genetik", 7th edition, Georg Thieme Verlag, Stuttgart, Germany, 1997), that by Winnacker ("Gene und Klone", VCH Verlagsgesellschaft, Weinheim, Germany, 1999) or that by Hagemann ("Allgemeine Genetik", 4th edition, Gustav Fischer Verlag, Stuttgart, 1999) .
A common method of mutating genes of C. glutamicum is the method of "gene disruption" and "gene replacement" described by Schwarzer and Puhler (Bio/Technology 9, 84-87 (1991)) .
In the method of gene disruption a central part of the coding region of the gene of interest is cloned in a plasmid vector which can replicate in a host (typically E. coli), but not in C. glutamicum. Possible vectors are, for example, pSUP301 (Simon et al., Bio/Technology 1, 784-791 (1983)), pKlδmob or pK19mob (Schafer et al., Gene 145, 69- 73 (1994)), pKlδmobsacB or pK19mobsacB (Jager et al., Journal of Bacteriology 174: 5462-65 (1992)), pGEM-T (Promega corporation, Madison, WI, USA), pCR2.1-TOPO (Shuman (1994). Journal of Biological Chemistry 269:32678- 84; US Patent 5,487,993), pCR®Blunt (Invitrogen, Groningen, The Netherlands; Bernard et al., Journal of Molecular Biology, 234: 534-541 (1993)) or pEMl (Schrumpf et al, 1991, Journal of Bacteriology 173:4510-4516). The plasmid vector which contains the central part of the coding region of the gene is then transferred into the desired strain of C. glutamicum by conjugation or transformation. The method of conjugation is described, for example, by Schafer et al. (Applied and Environmental Microbiology 60, 756-759 (1994)). Methods for transformation are described, for example, by Thierbach et al. (Applied Microbiology and Biotechnology 29, 356-362 (1988)), Dunican and Shivnan (Bio/Technology 7, 1067-1070 (1989)) and Tauch et al. (FEMS Microbiological Letters 123, 343-347 (1994) ) . After homologous recombination by means of a "cross over" event, the coding region of the gene in question is interrupted by the vector sequence and two incomplete alleles are obtained, one lacking the 3' end and one lacking the 5' end. This method has been used, for example, by Fitzpatrick et al. (Applied Microbiology and Biotechnology 42, 575-580 (1994)) to eliminate the recA gene of C. glutamicum.
In the method of "gene replacement", a mutation, such as e.g. a deletion, insertion or a base exchange, is established in vitro in the gene of interest. The allele prepared is in turn cloned in a vector which is not replicative for C. glutamicum and this is then transferred into the desired host of C. glutamicum by transformation or conjugation. After homologous recombination by means of a first "cross over" event which effects integration and a suitable second "cross-over" event which effects excision in the target gene or in the target sequence, the incorporation of the mutation or of the allele is achieved. This method was used, for example, by Peters-Wendisch et al. (Microbiology 144, 915 - 927 (1998)) to eliminate the pyc gene of C. glutamicum by a deletion.
A deletion, insertion or a base exchange can be incorporated into the metR gene or the metZ gene in this manner. In addition, it may be advantageous for the production of L-amino acids, in particular L-methionine, to enhance, in particular to over-express, one or more enzymes of the particular biosynthesis pathway, of glycolysis, of anaplerosis, of the citric acid cycle or of amino acid export, in addition to attenuation of the metR gene and/or of the metZ gene.
The term "enhancement" in this connection describes the increase in the intracellular activity of one or more enzymes (proteins) in a microorganism which are coded by the corresponding DNA, for example by increasing the number of copies of the gene or genes, using a potent promoter or using a gene or allele which codes for a corresponding enzyme (protein) having a high activity, and optionally combining these measures.
By enhancement measures, in particular over-expression, the activity or concentration of the corresponding protein is in general increased by at least 10%, 25%, 50%, 75%, 100%, 150%, 200%, 300%, 400% or 500%, up to a maximum of 1000% or 2000%, based on the starting microorganism.
Thus, for the preparation of L-methionine, one or more genes chosen from the group consisting of
• the gap gene which codes for glyceraldehyde 3-phosphate dehydrogenase (Eikmanns (1992) , Journal of Bacteriology 174:6076-6086) ,
• the tpi gene which codes for triose phosphate isomerase (Eikmanns (1992), Journal of Bacteriology 174:6076-6086),
• the pgk gene which codes for 3-phosphoglycerate kinase (Eikmanns (1992), Journal of Bacteriology 174:6076-6086),
• the pyc gene which codes for pyruvate carboxylase (Peters-Wendisch et al. (Microbiology 144, 915 - 927 (1998)), • the lysC gene which codes for a feed-back resistant aspartate kinase (Accession No.P26512),
• the metA gene which codes for homoserine 0- acetyltransferase (ACCESSION Number AF052652; EP-B- 0387527; EP-A-0699759) ,
• the metB gene which codes for cystathionine gamma- synthase (ACCESSION Number AF126953) ,
• the aecD gene which codes for cystathionine gamma-lyase (ACCESSION Number M89931) ,
• the glyA gene which codes for serine hydroxymethyltransferase (JP-A-08107788) ,
• the metY gene which codes for O-acetylhomoserine sulfhydrylase (DSM 13556)
can be enhanced, in particular over-expressed.
It may furthermore be advantageous for the production of L- methionine, in addition to the attenuation of the metR and/or metZ gene, for one or more genes chosen from the group consisting of
• the thrB gene which codes for homoserine kinase (ACCESSION Number P08210) ,
• the ilvA gene which codes for threonine dehydratase (ACCESSION Number Q04513) ,
• the thrC gene which codes for threonine synthase
(ACCESSION Number P23669) ,
• the ddh gene which codes for meso-dia inopimelate D- dehydrogenase (ACCESSION Number Y00151)
• the pck gene which codes for phosphoenol pyruvate carboxykinase (DE 199 50 409.1; DSM 13047), • the pgi gene which codes for glucose 6-phosphate isomerase (US 09/396,478; DSM 12969),
• the poxB gene which codes for pyruvate oxidase (DE: 1995 1975.7)
to be attenuated, in particular for the expression thereof to be reduced.
In addition to attenuation of the metR gene and/or of the met gene it may furthermore be advantageous, for the production of amino acids, in particular L-methionine, to eliminate undesirable side reactions (Nakayama: "Breeding of Amino Acid Producing Micro-organisms", in: Overproduction of Microbial Products, Krumphanzl, Sikyta, Vanek (eds.), Academic Press, London, UK, 1982).
The invention also provides the microorganisms prepared according to the invention, and these can be cultured continuously or discontinuously in the batch process (batch culture) or in the fed batch (feed process) or repeated fed batch process (repetitive feed process) for the purpose of production of L-amino acids, in particular L-methionine. A summary of known culture methods is described in the textbook by Chmiel (Bioprozesstechnik 1. Einfϋhrung in die Bioverfahrenstechnik (Gustav Fischer Verlag, Stuttgart, 1991) ) or in the textbook by Storhas (Bioreaktoren und periphere Einrichtungen (Vieweg Verlag, Braunschweig/ Wiesbaden, 1994)).
The culture medium to be used must meet the requirements of the particular strains in a suitable manner. Descriptions of culture media for various microorganisms are contained in the handbook "Manual of Methods for General Bacteriology" of the American Society for Bacteriology (Washington D.C., USA, 1981).
Sugars and carbohydrates, such as e.g. glucose, sucrose, lactose, fructose, maltose, molasses, starch and cellulose, co β" O CO CO 3 £U 3 Φ CO 3 rt Ω <v TJ Ω Hi O Ω β TJ CO ^ O H- β o O Hi o o β ^ 0) β H- Φ φ P- O β φ O l-1- " 1-5 0> o H 01 to ^ β H- φ H β O i-s H-1 O μ- μ-
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CL O φ cr Φ 0 Φ O ID " rt H- O H rt β 3 ft X O 3 O a
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H Φ CO Φ H- Φ ID Ό β ω o 3 Hi h-1 Hi o β β Ω β β cr O SD a Ω o
O O CL rt 3 rt H- CO H h-1 H φ β- Hi β H O ID a rt iQ Hi o H 3 o i O β a β- ID β ^ * φ ft o> CO H- H ^ rt 3 ^ Φ β TJ β β co H- H- Φ σ ** β* rt H- C rt 1 iD Φ Φ β Ω « • Φ H O β to h-1 β β I-" 01 O Hi Φ SD Φ β I-" φ Ω O β o H 3 O N Φ rt rt X
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01 ID o iQ Φ (U β β S H- Ω O Φ β β Hi H- rt 3 β* rt CO Φ ID Hi
Ω x H H cu ft β O O ID β β co o I-1 H- H CO DJ Hi Ω SD CO
H- H- rt H- rt ω rt 3 β- 3 M β Ω Ti Ό rt ιQ H 0 β O β (D β Ω O μ- rt o
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TJ o Ω Φ 1 3 rt T SD β H-1 CO β β H- β Ό ιQ o CO rt H- TJ Φ rt β Ω O Φ β Hi
TJ O 3 β Hi Φ O O- H- O U H β CO H β o Φ O ID H-1 μ- Ω H-"
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1 a
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Φ φ H rt H ≤: μ- β Hi iQ, β 0 Φ Hi rt SD β o * H ■fe. Ω H o μ- CO 0 Hi
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TJ H CO μ- a Ω Hi β βJ SD Ω β Hi SD Oi rt β SD o β H H» β β H to (D Ω 3 rt to H o μ- H CO rt o to Hi μ- μ- Hi Φ SD ft rt " SD μ- β Ω rt CO rt 1 SD O TJ Hi
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Hi H PJ H CD Ω cr SD Ω β* β Φ β ft μ- β β* μ- o CO »Q SD Ω 01 CO a Ω Hi β1 to β J β- l-i rt Φ φ rt ^ IV H- o Φ co φ SD β H Φ μ- . rt SD Φ
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H-1 CO a SD O β Hi • co t - β φ Φ Ϊ-T 3 i-1 μ- a o a β o o iQ 3 φ Ω φ Ω Hi
^ TJ σ 0 ** U2 to <Q β to SD OJ Φ Hi rt Ω CO Hi β rt O SD SD rt <! μ-
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Hi SD μ- Hh β" φ rt ID (-• β iQ CO H μ- Φ Hi CO β rt β φ O H-1 β1
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1 H SD μ- β- rt ^ β Hi rt a Hi rt (D β β' sQ β o π β rt β
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O β o β- Ω Hi 0 H μ- β μ- μ- 3 CD SD rt β Φ Φ O β* *< β s; H β β Hi Φ μ- O 3 β 0 Ω CO o o H Hi μ- H{ O H( O Ω H{ μ- SD TJ • μ- to rt rt Φ iQ rt β β β H Hi rt sQ I-1 SD Φ 0 ID Hi 0 Φ β rt I-1 SD β β" β- • H-1 vβ to μ- to β • cr CO • iQ μ- cr rt 3 μ- Φ Ω o rt Φ SD SD ~J Ω rt SD a CO μ- •«
* Hi o a a ID cr Hi β' rt Hi Hi 1 β β Ω O β μ- β μ- β* 1 On H-' μ- ^3 Ω Hi SD co o o CQ SD CO SD co β* β* 0
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SD "» SD CO Φ β TJ μ- SD
^ a Ω Hj β 3 3 3 CO O μ- to 1 SD CO β SD Oi μ- 3 σ CO β Hi β Ω cr CO H σ Ω Φ H-1 0 3 μ- μ- Ω ≤ 3 a Hi O to iQ β Hi Ω TJ H CΛ < Hi rt TJ (D I-1 rt Ω SD a rt rt φ a β a β H §! φ Φ H μ- Ω Ω SD φ φ Φ Φ μ- SD β Φ <! Φ β4 X a μ- Φ a SD μ- ID μ- SD 0 rt a O β SD Φ β- 0 O CO Hi Φ
SD Hi 3 to X (D μ- o Hi CO Ω μ- β SD β σ O TJ φ ≤: CO iQ iQ to Hi rt SD rt 1
H-» rt cr H rt Hi O μ- β 3 μ- rt SD rt 3 rt Φ β4 Φ H o μ- μ- Φ μ- β μ- Φ Hi μ- Φ μ- cr rt 3 β μ- N 3 φ a CO β CO β β H-1 β iQ μ- β a β a H-1
H Ω β Oi o H CO β Φ Ω φ Ω rt Ω Φ μ- — rt iQ μ- 0 rt CO φ β iQ cr 0
O β O sQ o μ- tr rt TJ CD CO O rt 0 φ o β- β Ω Hi CO β I-1 o H-1 O cr s:
CD rt rt ?? Ω >< β4 Φ rt β φ β Hi β Φ <£> Q O o o> Ω SD Hi μ- CD *< μ-
CO SD o β4 ≥; β" φ Ω μ- o rt H rt • rt h J-» CO Hi Hi μ- rt Hi O β4 rt iQ rt Hi (D β
Hi H Φ μ- 3 φ ) ft o Hi SD Φ Φ Φ ^ w Φ β H μ- CD iQ O iQ.
__— .. I-1 φ I-1 H • rt H β μ- β 3 β "» o SD rt to H SD β β μ- Φ 0 β ->
Λ •< a Ω Φ β Φ O β H rt o rt l-> Hi β4 β ft rt CO μ- CO H-" O μ-
O > ft φ ffi X 3 Ω Φ to β o 3 to CO Φ β o β4 β4 Ω " Os rt Hi en TJ Hi β Hi Hi • rt to SD CO __—. SD ,- . Hi < Φ a H φ μ- SD Ω SD H SD μ- o\° Hi 0 rt R-> 0 M cr ft β CO o rt V H V μ- . — . (D H 5 Φ Hi Ω H φ SD a a to cr β
— Φ Hi Φ a SD S O Hi β β" O β l-> H μ- Φ Hi CO Φ H β < Φ H Φ
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O Φ rt o Ω CO Λ4 φ β4 •< co o 1 o l-1 cri o CO CO rt Φ β β Ω β μ- β rt iQ
Hi H TJ β rt iQ (- SD iQ OD β φ O SD cr Φ O H-1 H rt 1 H Ω
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3 cr rt Hi o CO Hi β β4 SD 3 o SD a — • Hi a SD rt CO < CO £D Q Hj μ- 3 μ- φ o , — . β φ φ Hi N> CD β μ- μ- • to c rt Oi Φ Φ Hi to Φ β TJ <! rt • rt μ» H-1 SD 2 H O I-1 rt β s: <! μ- sQ μ- CD Φ β μ- β O Φ φ CD μ- β4 β" so rt I-1 β rt Ω H- !- φ μ- φ μ- μ- N rt CO CO O β rt a β a o a μ- Ch N3 μ- so O CO a φ O Φ *ε X rt a rt a Φ SD β4 • Φ μ- > O CO TJ *» rt Φ o O o CO 00 Ω μ- H a 3 Ω ft β4 3 β4 Φ CO CO O rt 3 to Hi O H β Hi μ- a β TJ β4 » H-1 H O a Φ - O β μ- σ rt O H β μ- 3 a μ- • SD SD Ω Φ o a β CD 3 SD 3 . β4 CD O SD <! CO O a Φ iQ TJ β O (D β Hi Hi β4 CO β μ- rt 3 to Ά O Φ β CO a SD ft SD o φ β ^ <l rt ft CΛ Φ TJ rt CD to a TJ CD TJ 3 H β μ- β CO H ft CD Φ Ω a 0 rt CO Φ μ- Ω β O 3 β β (D β CD φ φ rt O β Ω rt *< μ- β 3 rt μ- Hi a o β" β Ω CΛ β4 iQ β € φ rt ω H CO H CD μ- Hi TJ iQ β4 β <! Ω TJ • M Φ
Ω O rt ft β HJ a μ- rt CO rt rt rt β β μ-1 Φ Hi β Φ Φ Q H
Ω TJ μ- to β β4 O: μ- rt Φ 1 μ- TJ μ- to o β J SD Hfl CO CO CO O H Hi β H 0 ft 3 EP β β4 Hi _— Hi! Ω Hi Ω s. μ- 0 CO CO φ • β Hi SD Ω
HS s: φ β rt ft SD Φ iQ • Λ H H-1 o -> CD CΛ β ≤: a 0 0 Hi β (D
Hi μ- Hi φ iQ β β 3 φ Φ a to Φ <! iQ rt φ a o H H Ω ft Φ β β μ- 3 Ω SD β 3 3 Φ rt υi φ β TJ μ- Φ Φ Hi Hj CD O β4 to H β β" H5 φ β4 H *<» Φ φ rt 4 3 CO Ω CO 0 Hι CO O Hi 0 CD CO Ω β Φ 1 SD rt Q o SD SD β rt to rt β4 Φ Λ» μ- rt μ- S φ to Hi to H Hi μ- (D <! Hi rt β4
• β r β O CO β4 o — - 3 N CO N a β Φ Φ cr 3 Hi Φ iQ I-1 μ- Φ rt H-" CO _-> - — . β O a TJ φ φ to Φ _-" Oi -3 Φ Φ μ- μ- Hi β H O β β
*< O μ> β a ω SD S SD z, Hj to β4 X a β H-1 μ- rt SD
SD s: sQ
SD iQ UD iQ CO H μ- β o μ- o a 3 μ- CD CD a CD φ μ- β μ- μ- β • l£> o rt rt CO Hi rt Hi
Hi s I-1 s: 3 Ω 3 ft φ Hi Hj O β β β
TJ TJ 3 σi μ- O μ- β4 β4 μ- φ μ-
*» β4 TJ β H CO β h-1 vQ
H — β Ω rt K) > rt rt (- Hi to ** SD CD rt rt O cr to H-1 μ-1 XT o CD O β4 β4 Hi
•** φ Hi H-1 rt β
O a ^ o a SD Φ CD o CO CO μ- Hj β H Φ to rt rt CD 0 β
C I o β
Ω
K3 rt s Hi Φ ft O ≤ Ω β
• H o β4
Alternatively, however, the product can be absorbed on to an organic or inorganic carrier substance which is known and conventional in feedstuffs processing, such as, for example, silicas, silicates, grits, brans, meals, starches, sugars or others, and/or mixed and stabilized with conventional thickeners or binders. Use examples and processes in this context are described in the literature (Die Muhle + Mischfuttertechnik 132 (1995) 49, page 817) .
Finally, the product can be brought into a state in which it is stable to digestion by animal stomachs, in particular the stomach of ruminants, by coating processes ("coating") using film-forming agents, such as, for example, metal carbonates, silicas, silicates, alginates, stearates, starches, gums and cellulose ethers, as described in DE-C- 4100920.
If the biomass is separated off during the process, further inorganic solids, for example added during the fermentation, are in general removed. In addition, the animal feedstuffs additive according to the invention comprises at least the predominant proportion of the further substances, in particular organic substances, which are formed or added and are present in solution in the fermentation broth, where these have not been separated off by suitable processes.
In one aspect of the invention, the biomass can be separated off to the extent of up to 70%, preferably up to 80%, preferably up to 90%, preferably up to 95%, and particularly preferably up to 100%. In another aspect of the invention, up to 20% of the biomass, preferably up to 15%, preferably up to 10%, preferably up to 5%, particularly preferably no biomass is separated off.
These organic substances include organic by-products which are optionally produced, in addition to the L-methionine, and optionally discharged by the microorganisms employed in the fermentation. These include L-amino acids chosen from the group consisting of L-lysine, L-valine, L-threonine, L- alanine or L-tryptophan. They include vitamins chosen from the group consisting of vitamin Bl (thiamine) , vitamin B2 (riboflavin) , vitamin B5 (pantothenic acid), vitamin B6 (pyridoxine) , vitamin B12 (cyanocobalamin) , nicotinic acid/nicotinamide and vitamin E (tocopherol) . They include furthermore organic acids which carry one to three carboxyl groups, such as, for example, acetic acid, lactic acid, citric acid, malic acid or fumaric acid. Finally, they also include sugars, such as, for example, trehalose. These compounds are optionally desired if they improve the nutritional value of the product.
These organic substances, including L-methionine and/or D- methionine and/or the racemic mixture D, L-methionine, can also be added, depending on requirements, as a concentrate or pure substance in solid or liquid form during a suitable process step. These organic substances mentioned can be added individually or as mixtures to the resulting or concentrated fermentation broth, or also during the drying or granulation process. It is likewise possible to add an organic substance or a mixture of several organic substances to the fermentation broth and a further organic substance or a further mixture of several organic substances during a later process step, for example granulation.
The product described above is suitable as a feedstuffs additive, i.e. feed additive, for animal nutrition.
The L-methionine content of the animal feedstuffs additive is conventionally 1 wt.% to 80 wt.%, preferably 2 wt.% to 80 wt.%, particularly preferably 4 wt.% to 80 wt.%, and very particularly preferably 8 wt.% to 80 wt.%, based on the dry weight of the animal feedstuffs additive. Contents of 1 wt.% to 60 wt.%, 2 wt.% to 60 wt.%, 4 wt.% to 60 wt.%, 6 wt.% to 60 wt.%, 1 wt.% to 40 wt.%, 2 wt.% to 40 wt.% or 4 wt.% to 40 wt.% are likewise possible. The water content of the feedstuffs additive is conventionally up to 5 wt.%, preferably up to 4 wt.%, and particularly preferably less than 2 wt . % .
The invention accordingly also provides a process for the preparation of an L-methionine-containing animal feedstuffs additive from fermentation broths, which comprises the steps
a) culture and fermentation of an L-methionine-producing microorganism in a fermentation medium;
b) removal of water from the L-methionine-containing fermentation broth (concentration) ;
c) removal of an amount of 0 to 100 wt.% of the biomass formed during the fermentation; and
d) drying of the fermentation broth obtained according to a) and/or b) to obtain the animal feedstuffs additive in the desired powder or granule form.
If desired, one or more of the following steps can furthermore be carried out in the process according to the invention:
e) addition of one or more organic substances, including L-methionine and/or D-methionine and/or the racemic mixture D, L-methionine, to the products obtained according to a) , b) and/or c) ;
f) addition of auxiliary substances chosen from the group consisting of silicas, silicates, stearates, grits and bran to the substances obtained according to a) to d) for stabilization and to increase the storability; or
g) conversion of the substances obtained according to a) to e) into a form stable to an animal stomach, in particular rumen, by coating with film-forming agents. Methods for the determination of L-amino acids are known from the prior art. The analysis of L-methionine can be carried out by ion exchange chromatography with subsequent ninhydrin derivation, as described by Spackman et al. (Analytical Chemistry, 30, (1958), 1190).
The process according to the invention is used for the fermentative preparation of amino acids, in particular L- methionine.
The present invention is explained in more detail in the following with the aid of embodiment examples.
The isolation of plasmid DNA from Escherichia coli and all techniques of restriction, Klenow and alkaline phosphatase treatment were carried out by the method of Sambrook et al. (Molecular Cloning. A Laboratory Manual (1989) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA) . Methods for transformation of Escherichia coli are also described in this handbook.
The composition of the usual nutrient media, such as LB or TY medium, can also be found in the handbook by Sambrook et al.
Example 1
Preparation of a genomic cosmid gene library from Corynebacterium glutamicum ATCC 13032
Chromosomal DNA from Corynebacterium glutamicum ATCC 13032 was isolated as described by Tauch et al. (1995, Plasmid 33:168-179) and partly cleaved with the restriction enzyme Sau3AI (Amersham Pharmacia, Freiburg, Germany, Product Description Sau3AI, Code no. 27-0913-02) . The DNA fragments were dephosphorylated with shrimp alkaline phosphatase (Roche Diagnostics GmbH, Mannheim, Germany, Product Description SAP, Code no. 1758250) . The DNA of the cosmid vector SuperCosl (Wahl et al. (1987) Proceedings of the National Academy of Sciences USA 84:2160-2164), obtained from Stratagene (La Jolla, USA, Product Description SuperCosl Cosmid Vector Kit, Code no. 251301) was cleaved with the restriction enzyme Xbal (Amersham Pharmacia, Freiburg, Germany, Product Description Xbal, Code no. 27-0948-02) and likewise dephosphorylated with shrimp alkaline phosphatase.
The cosmid DNA was then cleaved with the restriction enzyme Ba HI (Amersham Pharmacia, Freiburg, Germany, Product Description BamHI, Code no. 27-0868-04) . The cosmid DNA treated in this manner was mixed with the treated ATCC13032 DNA and the batch was treated with T4 DNA ligase (Amersham Pharmacia, Freiburg, Germany, Product Description T4-DNA- Ligase, Code no.27-0870-04) . The ligation mixture was then packed in phages with the aid of Gigapack II XL Packing Extract (Stratagene, La Jolla, USA, Product Description Gigapack II XL Packing Extract, Code no. 200217).
For infection of the E. coli strain NM554 (Raleigh et al. 1988, Nucleic Acid Research 16:1563-1575) the cells were taken up in 10 mM MgS04 and mixed with an aliquot of the phage suspension. The infection and titering of the cosmid library were carried out as described by Sambrook et al. (1989, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor) , the cells being plated out on LB agar (Lennox, 1955, Virology, 1:190) with 100 mg/1 ampicillin. After incubation overnight at 37°C, recombinant individual clones were selected.
Example 2
Isolation and sequencing of the metR and metZ genes
The cosmid DNA of an individual colony was isolated with the Qiaprep Spin Miniprep Kit (Product No. 27106, Qiagen, Hilden, Germany) in accordance with the manufacturer's instructions and partly cleaved with the restriction enzyme Sau3AI (Amersham Pharmacia, Freiburg, Germany, Product Description Sau3AI, Product No. 27-0913-02) . The DNA fragments were dephosphorylated with shrimp alkaline phosphatase (Roche Diagnostics GmbH, Mannheim, Germany, Product Description SAP, Product No. 1758250) . After separation by gel electrophoresis, the cosmid fragments in the size range of 1500 to 2000 bp were isolated with the QiaExII Gel Extraction Kit (Product No. 20021, Qiagen, Hilden, Germany) .
The DNA of the sequencing vector pZero-1, obtained from Invitrogen (Groningen, The Netherlands, Product Description Zero Background Cloning Kit, Product No. K2500-01) was cleaved with the restriction enzyme BamHI (Amersham Pharmacia, Freiburg, Germany, Product Description BamHI, Product No. 27-0868-04) . The ligation of the cosmid fragments in the sequencing vector pZero-1 was carried out as described by Sambrook et al. (1989, Molecular Cloning: A laboratory Manual, Cold Spring Harbor) , the DNA mixture being incubated overnight with T4 ligase (Pharmacia Biotech, Freiburg, Germany) . This ligation mixture was then electroporated (Tauch et al. 1994, FEMS Microbiol Letters, 123:343-7) into the E. coli strain DH5αMCR (Grant, 1990, Proceedings of the National Academy of Sciences U.S.A., 87:4645-4649) and plated out on LB agar (Lennox, 1955, Virology, 1:190) with 50 mg/1 zeocin.
The plasmid preparation of the recombinant clones was carried out with Biorobot 9600 (Product No. 900200, Qiagen, Hilden, Germany) . The sequencing was carried out by the dideoxy chain termination method of Sanger et al. (1977, Proceedings of the National Academy of Sciences U.S.A., 74:5463-5467) with modifications according to Zimmermann et al. (1990, Nucleic Acids Research, 18:1067). The "RR dRhodamin Terminator Cycle Sequencing Kit" from PE Applied Biosystems (Product No. 403044, Weiterstadt, Germany) was used. The separation by gel electrophoresis and analysis of the sequencing reaction were carried out in a "Rotiphoresis NF Acrylamide/Bisacrylamide" Gel (29:1) (Product No. A124.1, Roth, Karlsruhe, Germany) with the "ABI Prism 377" sequencer from PE Applied Biosystems (Weiterstadt, Germany) .
The raw sequence data obtained were then processed using the Staden program package (1986, Nucleic Acids Research, 14:217-231) version 97-0. The individual sequences of the pZerol derivatives were assembled to a continuous contig. The computer-assisted coding region analysis was prepared with the XNIP program (Staden, 1986, Nucleic Acids Research, 14:217-231).
The resulting nucleotide sequence is shown in SEQ ID No. 1. Analysis of the nucleotide sequence showed two open reading frames of 567 base pairs and 1146 base pairs, which were called the metR gene and metZ gene. The metR gene codes for a protein of 189 amino acids, the metZ gene codes for a protein of 382 amino acids.
Example 3
Deletion of the metR and metZ genes in C. glutamicum ATCC13032
For this, chromosomal DNA was isolated from the strain ATCC13032 by the method of Tauch et al. (Plasmid 33:168-179 (1995) ) . On the basis of the sequences of the metR and metZ genes known for C. glutamicum from example 2, the oligonucleotides described below were chosen for generation of the metR-metZ deletion allele by means of the polymerase chain reaction (PCR) by the gene Soeing method (Horton, Molecular Biotechnology 3: 93-98 (1995)).
orfR 20 (see also SEQ ID No. 4) :
5 -GAT CTA GAA TTC AAC ATC GTC CGA TAG GCC AG-3
orfRmetZ del (see also SEQ ID No. 5) :
5Λ-GGT CTG GTT ACT GGC TAC GAA TGC AGA CAA TAA TGT CGC T-3' metZ 21 (see also SEQ ID No. 6):
5 -GAT CTA GAA TTC CGC TTC CGA GAA TCA ATA CC-3'
The primers shown were synthesized by MWG Biotech (Ebersberg, Germany) and the PCR reaction was carried out using Pfu polymerase (Stratagene, Product. No. 600135, La Jolla, USA) and a PTC 100 Thermocycler (MJ Research Inc., Waltham, USA) .
The primers orfR 20 and metZ 21 contain in each case an inserted cleavage site for the restriction enzyme EcoRI, which are marked by underlining in the nucleotide sequence shown above. The primer orfRmetZ del is composed of two regions of the nucleotide sequence, one' of which bonds in the "upstream" region of metR and includes the first two nucleotides of the start codon ATG, and the other bonds after the stop codon of metZ in the "downstream" region thereof.
In a first PCR reaction, by means of the primers orfR 20 and orfRmetZ del an amplification product 402 bp in size was produced which contains the "upstream" region of the met R gene including the first two nucleotides of the start codon ATG, and additionally a 20 bp extension, appended with the oligonucleotide orfRmetZ del, which corresponds to a part of the nucleotide sequence of the "downstream" region of metZ. The amplification product was isolated from the agarose gel with the QiaExII Gel Extraction Kit (Product No. 20021, Qiagen, Hilden, Germany) . It was called metRmetZ del fragment 1 and is shown in SEQ ID No. 7.
In a second PCR reaction the metRmetZ deletion derivative 982 bp in size was produced with the primer metZ 21 and the purified amplification product metRmetZ del fragment 1, which can bond by means of the 20 bp extension from the oligonucleotide orfRmetZ del in the "downstream" region of metZ to the DNA and function there as a primer. It comprises, between the two EcoRI cleavage sites appended to the primers, 368 bp of the "upstream region" of the metR gene, the first two nucleotides of the start codon ATG and 588 bp of the "downstream" region of the metZ gene, starting with the fourth nucleotide after the stop codon of the metZ gene.
It was called metRmetZ del fragment 2 and is shown in SEQ ID No. 8.
Example 4
Deletion mutagenesis of the metR and metZ genes in C. glutamicum ATCC13032
The 982 bp metRmetZ deletion derivative obtained in example 3 was incorporated by means of deletion mutagenesis with the aid of the sacB system described by Schafer et al., Gene, 14, 69-73 (1994) into the chromosome of C. glutamicum. This system enables the expert to identify or select allele exchanges which take place by homologous recombination. ... . . .
1. Construction of the exchange vector pKlδmobsacBdeltametRmetZ
The metRmetZ deletion derivative 982 bp in size obtained in example 3 was cleaved with the restriction endonuclease EcoRI and then isolated from the agarose gel with the QiaExII Gel Extraction Kit (Product No. 20021, Qiagen, Hilden, Germany) and used for ligation with the mobilizable cloning vector pKlδmobsacB described by Schafer et al., Gene, 14, 69-73 (1994) . This was cleaved beforehand with the restriction enzyme EcoRI, subsequently dephosphorylated with shrimp, alkaline phosphatase (Roche Diagnostics GmbH, Mannheim, Germany, Product Description SAP, Product No. 1758250) and then mixed with the metRmetZ deletion derivative, and the mixture was treated with T4 DNA ligase (Amersham- harmacia, Freiburg, Germany) . The E. coli strain S17-1 (Simon et al., Bio/Technologie [Bio/Technology] 1: 784-791, 1993) was then electroporated with the ligation batch (Hanahan, In. DNA cloning. A practical approach. Vol.l. ILR-Press, Cold Spring Harbor, New York, 1989) . Selection of plasmid-carrying cells was made by plating out the transformation batch on LB agar (Sambrock et al., Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor, New York, 1989), which had been supplemented with 25 mg/1 kanamycin.
Plasmid DNA was isolated from a transformant with the aid of the QIAprep Spin Miniprep Kit from Qiagen and the cloned lrp deletion allele was verified by means of sequencing by MWG Biotech (Ebersberg, Germany) .
The plasmid was called pK18mobsacBdeltametRmetZ and is shown in figure 1.
Example 5
Deletion mutagenesis of the metR and metZ genes in the C. glutamicum strain ATCC13032
The vector pKlδmobsacBdeltametRmetZ mentioned in example 4 was electroporated by the electroporation method of Tauch et al.,(1989 FEMS Microbiology Letters 123: 343-347) in the strain C. glutamicum ATCC13032. The vector cannot replicate independently in ATCC13032 and is retained in the cell only if it has integrated into the chromosome. Selection of clones with integrated pKlδmobsacBdeltametRmetZ was carried out by plating out the electroporation batch on LB agar (Sambrock et al., Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor, New York, 1989), which had been supplemented with 15 mg/1 kanamycin. Clones which had grown on were plated out on LB agar plates with 25 mg/1 kanamycin and incubated for 16 hours at 33°C. To achieve excision of the plasmid together with the complete chromosomal copy of the metR and metZ genes, the clones were incubated unselectively overnight in LB medium and then cultured on LB agar with 10% sucrose.
The plasmid pKlδmobsacB contains a copy of the sacB gene, which converts sucrose into levan sucrase, which is toxic to C. glutamicum. Only those clones in which the pKlδmobsacBdeltametRmetZ integrated has been excised again therefore grow on LB agar with sucrose. In the excision, together with the plasmid either the complete chromosomal copy of the metR and metZ genes can be excised, or the metRmetZ deletion derivative. To demonstrate that the metR and metZ genes are deleted in the chromosome, the plasmid pKlδmobsacBdeltametRmetZ was marked by the method of "The DIG System Users Guide for Filter Hybridization" of Boehringer Mannheim GmbH (Mannheim, Germany, 1993) using the DIG hybridization kit from Boehringer. Chromosomal DNA of a potential deletion mutant was isolated by the method of Eikmanns et al. (Microbiology 140: 1817-1628 (1994)) and in each case cleaved with the restriction enzymes Hindlll and EcoRI in separate batches-.
The fragments formed were separated by agarose gel electrophoresis and hybridized at 68°C with the Dig hybridization kit from Boehringer. With the aid of the fragments formed, it could be shown that the strain ATCC13032 has lost its copies of the metR and metZ genes, and instead the region from the 3rd nucleotide of the metR gene up to and including the 3rd nucleotide after the metZ gene is deleted.
The strain was called C. glutamicum ATCC13032deltametRmetZ.
Example 6
Preparation of methionine with the strain C. glutamicum ATCCl3032deltametRmetZ
The C. glutamicum strain ATCCl3032deltametRmetZ obtained in example 4 was cultured in a nutrient medium suitable for the production of methionine and the methionine content in the culture supernatant was determined.
For this, the strain was first incubated on a brain-heart agar plate for 24 hours at 33°C. Starting from this agar plate culture, a preculture was seeded (10 ml medium in a 100 ml conical flask) . The medium MM was used as the medium for the preculture.
Medium MM
CSL (corn steep liquor) 5 g/1
MOPS (morpholinopropanesulfonic acid) 20 g/1
Glucose (autoclaved separately) 50g/l
Salts :
(NH4 ) 2S04 25 g/1
KH2P04 0.1 g/1
MgS0 * 7 H20 1.0 g/1
CaCl2 * 2 H20 10 mg/1
FeS04 * 7 H20 10 mg/1
MnS04 * H20 5.0mg/l
Biotin (sterile-filtered) 0.01 mg/1
Vitamin B12 (sterile-filtered) 0.02 mg/1
Thiamine * HC1 (sterile-filtered) 0.2 mg/1
CaC03 25 g/1
The CSL, MOPS and the salt solution were brought to pH 7 with aqueous ammonia and autoclaved. The sterile substrate and vitamin solutions were then added, as well as the CaC03 autoclaved in the dry state.
The preculture was incubated for 16 hours at 33°C at 240 rpm on a shaking machine. A main culture was seeded from this preculture such that the initial OD ( 660 nm) of the main culture was 0.1. Medium MM was also used for the main culture. Culturing is carried out in a 10 ml volume in a 100 ml conical flask with baffles. Culturing was carried out at 33°C and 80% atmospheric humidity.
After 72 hours, the OD was determined at a measurement wavelength of 660 nm with a Biomek 1000 (Beckmann Instruments GmbH, Munich) . The amount of methionine formed was determined with an amino acid analyzer from Eppendorf- BioTronik (Hamburg, Germany) by ion exchange chromatography and post-column derivation with ninhydrin detection.
The result of the experiment is shown in table 1.
Table 1
Brief Description of the Figure:
Figure 1: Map of the plasmid pKlδmobsacBdeltametRmetZ.
The abbreviations and designations used have the following meaning:
sacB sacB gene
oriV ColEl-similar origin from pMBl
KmR Kanamycin resistance
Hindlll Cleavage site of the restriction enzyme Hindlll EcoRI Cleavage site of the restriction enzyme EcoRI
RP4mob RP4 mobilization site
orfR' Nucleotides A and T of the start codon of metR
metRmetZ del Cloned deletion derivative for metR and metZ
SEQUENCE PROTOCOL
<110> Degussa AG
<120> Nucleotide sequences which code for the metR and metZ genes
<130> 000369 BT
<140> <141>
<160> 8
<170> Patentln Ver. 2.1
<210> 1
<211> 2628
<212> DNA
<213> Corynebacterium glutamicum
<220>
<221> CDS
<222> (447) .. (1013)
<223> metR gene
<220>
<221> CDS
<222> (1038) .. (2183)
<223> metZ gene
<400> 1 cggtcacgtt gggatcgttg tcaaaactcc ccagtggttt cacttcataa actcgcggag 60 ttttccgggg aactgaaaaa catcgtccga taggccagcg tctaattcag cagcgatttc 120 ggcagcaagc ccagcgccat taatcagagc ggtgaaataa acatggttca tgattatgtc 180 aggacggtaa ttagacttat gaccaggttt aaggaggtca ccaggttgaa gccgcgctat 240 tgttccgtgg aaaagggggc cctgatctag ctgattattc atcgcagtaa gcgctttcgg 300 taggtgggtg aatcatcgta gtcttccgag ccccgtgacc cgatccgttt tgtgcaatcc 360 aatgctactc ccacagagcg ggctactttc tctaaaaatg ttctcatagt agataaaatt 420 gttcttaaag cgacattatt gtctgc atg gaa gac gat etc agt get get etc 473
Met Glu Asp Asp Leu Ser Ala Ala Leu 1 5 gtc aaa gcg ctt ttc gac gcg cga ace caa cgc agg etc tct ate teg 521 Val Lys Ala Leu Phe Asp Ala Arg Thr Gin Arg Arg Leu Ser lie Ser 10 15 20 25 gcg tta get gaa tec tec ggt gtg teg cga gca atg att tec cgc gtg 569 Ala Leu Ala Glu Ser Ser Gly Val Ser Arg Ala Met lie Ser Arg Val gaa aac gca gag gcg caa cca age get gca tta ctt gga cgc ctt tec 617 Glu Asn Ala Glu Ala Gin Pro Ser Ala Ala Leu Leu Gly Arg Leu Ser 45 50 55 ggt gca ttg ggt atg acg ctt teg gag etc att gca cag get gaa ggt 665 Gly Ala Leu Gly Met Thr Leu Ser Glu Leu lie Ala Gin Ala Glu Gly 60 65 70 ggc tat gac egg ggc get egg egg tea aag cag tct gta tgg aca gat 713 Gly Tyr Asp Arg Gly Ala Arg Arg Ser Lys Gin Ser' Val Trp Thr Asp 75 80 85 cca get ace ggt tac aca egg cgt gca gtg tea cag ccg tea gaa tec 761 Pro Ala Thr Gly Tyr Thr Arg Arg Ala Val Ser Gin Pro Ser Glu Ser 90 95 100 105 cca eta gaa eta gtg gaa gta atg ctg cct cct ggg gcg gaa gtt ggc 809 Pro Leu Glu Leu Val Glu Val Met Leu Pro Pro Gly Ala Glu Val Gly 110 115 120 tac cca get gat get tat cgt ttc atg gat cag gtg gtc tgg gta etc 857 Tyr Pro Ala Asp Ala Tyr Arg Phe Met Asp Gin Val Val Trp Val Leu 125 130 135 gaa ggg gee gtt cgt att act gaa ggt gaa gag gtc cac gaa ctt tea 905 Glu Gly Ala Val Arg He Thr Glu Gly Glu Glu Val His Glu Leu Ser 140 145 150 acg ggg gat tgt eta egg ttt ggg cct ccg cga gat ace gac ttt get 953 Thr Gly Asp Cys Leu Arg Phe Gly Pro Pro Arg Asp Thr Asp Phe Ala 155 160 165 aat ccc ace ace gta gcc act agg tat tta gtt gee ttg gac aag cgt 1001 Asn Pro Thr Thr Val Ala Thr Arg Tyr Leu Val Ala Leu Asp Lys Arg 170 175 180 185 gta cct cgt get tgatataaca agtaaggaag cctg atg aat ttt tac cca 1052 Val Pro Arg Ala Met Asn Phe Tyr Pro
190 cca tct gta cct att aac cct gcg tgg cgt cca ccc aca gta act gtg 1100 Pro Ser Val Pro He Asn Pro Ala Trp Arg Pro Pro Thr Val Thr Val 195 200 205 210 caa gcg gga egg cca gcc aga act cct ggt gcg ccg atg aac cca cct 1148 Gin Ala Gly Arg Pro Ala Arg Thr Pro Gly Ala Pro Met Asn Pro Pro 215 220 225 ate acg ttg tec age act tat gtt cat gat tea gaa aaa get tat ggg 1196 He Thr Leu Ser Ser Thr Tyr Val His Asp Ser Glu Lys Ala Tyr Gly 230 235 240 cgc gat ggc aat gat gga tgg ggt gca ttt gag get gcc atg gga act 1244 Arg Asp Gly Asn Asp Gly Trp Gly Ala Phe Glu Ala Ala Met Gly Thr 245 250 255 eta gat ggt ggg ttc gcg gta tct tat tct tea ggt ttg gca gcg gca 1292 Leu Asp Gly Gly Phe Ala Val Ser Tyr Ser Ser Gly Leu Ala Ala Ala 260 265 270 acg teg att get gat ttg gtt cct act ggt ggc aca gtt gtt tta cct 1340 Thr Ser He Ala Asp Leu Val Pro Thr Gly Gly Thr Val Val Leu Pro 275 280 285 290 aaa get gcc tat tat ggc gtg ace aat att ttc gcc agg atg gaa gcc 1388 Lys Ala Ala Tyr Tyr Gly Val Thr Asn He Phe Ala Arg Met Glu Ala 295 300 305 cgc gga agg ctg aag gtt cga act gtt gat gca gac aat ace gaa gaa 1436 Arg Gly Arg Leu Lys Val Arg Thr Val Asp Ala Asp Asn Thr Glu Glu 310 315 320 gtg att get get get caa ggt gca gat gtg gtg tgg gtg gaa teg ate 1484 Val He Ala Ala Ala Gin Gly Ala Asp Val Val Trp Val Glu Ser He 325 330 335 get aat ccg acg atg gtg gta get gat ate cct gca ata gtc gac ggt 1532 Ala Asn Pro Thr Met Val Val Ala Asp He Pro Ala He Val Asp Gly 340 345 350 gtg cgt ggg ctt gga gtt ttg act gtc gtt gac gcg act ttc gca acg 1580 Val Arg Gly Leu Gly Val Leu Thr Val Val Asp Ala Thr Phe Ala Thr 355 360 365 370 cca ctt cgt caa cgt cca ttg gaa ctt ggt get gat att gtg ctt tac 1628 Pro Leu Arg Gin Arg Pro Leu Glu Leu Gly Ala Asp He Val Leu Tyr 375 380 385 teg gca ace aaa ctt ate ggt gga cac tct gat ctt ctt ctt gga gtc 1676 Ser Ala Thr Lys Leu He Gly Gly His Ser Asp Leu Leu Leu Gly Val 390 395 400 gca gtg tgc aag tct gag cac cat gcg cag ttt ctt gcc act cac cgt 1724 Ala Val Cys Lys Ser Glu His His Ala Gin Phe Leu Ala Thr His Arg 405 410 415 cat gat cat ggt tea gtg ccg gga ggt ctt gaa gcg ttt ctt get etc 1772 His Asp His Gly Ser Val Pro Gly Gly Leu Glu Ala Phe Leu Ala Leu 420 425 430 cgt gga ttg tat tec ttg gcg gtg cgt ctt gat cga gca gaa tec aac 1820 Arg Gly Leu Tyr Ser Leu Ala Val Arg Leu Asp Arg Ala Glu Ser Asn 435 440 445 450 gca gca gaa ctt teg egg cga ctt aac gcg cat cct teg gtt ace cgc 1868 Ala Ala Glu Leu Ser Arg Arg Leu Asn Ala His Pro Ser Val Thr Arg 455 460 465 gtc aat tat cca gga ctt cct gat gat ccc caa cat gaa aaa gcc gtg 1916 Val Asn Tyr Pro Gly Leu Pro Asp Asp Pro Gin His Glu Lys Ala Val 470 475 480 cga gtc eta ccc tct gga tgt gga aac atg ttg tea ttt gag ctt gat 1964 Arg Val Leu Pro Ser Gly Cys Gly Asn Met Leu Ser Phe Glu Leu Asp 485 490 495 gca aca cct gaa cga act gat gag att etc gaa age ctg tea ctt tta 2012 Ala Thr Pro Glu Arg Thr Asp Glu He Leu Glu Ser Leu Ser Leu Leu 500 505 510 ace cac gcg ace agt tgg gga ggt gtg gaa aca gcc att gaa cgt cgc 2060 Thr His Ala Thr Ser Trp Gly Gly Val Glu Thr Ala He Glu Arg Arg 515 520 525 530 ace agg egg gat get gaa gtg gtg gca gga gta ccg atg act ctt tgc 2108 Thr Arg Arg Asp Ala Glu Val Val Ala Gly Val Pro Met Thr Leu Cys 535 540 545 cgc gtt tec gta gga att gaa gac gtt gaa gat eta tgg gaa gac etc 2156 Arg Val Ser Val Gly He Glu Asp Val Glu Asp Leu Trp Glu Asp Leu 550 555 560 aac gcc tea ate gac aaa gtt ctg ggt tagaactcgt agccagtaac 2203 Asn Ala Ser He Asp Lys Val Leu Gly 565 570 cagaccttca gtgtttggtt gccactccag tgctggggcg acatgatcag cgaagttctt 2263 caggatcgac gcgttgatct caacacccat ttggttgggg gcggtgagca tcaaggtgtc 2323 ggctteeatc acagctttgt cttcettgag ctggtcgatg agttcategg gacttccggc 2383 gtagctgcga ccgaacgtgg atcgggtatc atccaggatt cctacttggt caccgccttg 2443 tccctgaagt ccgaaaagct cacggtcgcg gtcggtgacg atcgggaaga tggaectgga 2503 gacagacaca cgtggggtcc aatcgtgtcc ggcttctttc caagcttggc ggtagaacgc 2563 gatttgatcg gcttgcagat ccccgaagga ttggccggtg gcttcggcga cgagggtgga 2623 gctca 2628
<210> 2
<211> 189
<212> PRT
<213> Corynebacterium glutamicum
<400> 2
Met Glu Asp Asp Leu Ser Ala Ala Leu Val Lys Ala Leu Phe Asp Ala
1 5 10 15
Arg Thr Gin Arg Arg Leu Ser He Ser Ala Leu Ala Glu Ser Ser Gly
20 25 30
Val Ser Arg Ala Met He Ser Arg Val Glu Asn Ala Glu Ala Gin Pro
35 40 45
Ser Ala Ala Leu Leu Gly Arg Leu Ser Gly Ala Leu Gly Met Thr Leu
50 55 60
Ser Glu Leu He Ala Gin Ala Glu Gly Gly Tyr Asp Arg Gly Ala Arg 65 70 75 80
Arg Ser Lys Gin Ser Val Trp Thr Asp Pro Ala Thr Gly Tyr Thr Arg
85 90 95
Arg Ala Val Ser Gin Pro Ser Glu Ser Pro Leu Glu Leu Val Glu Val
100 105 110
Met Leu Pro Pro Gly Ala Glu Val Gly Tyr Pro Ala Asp Ala Tyr Arg 115 120 125 Phe Met Asp Gin Val Val Trp Val Leu Glu Gly Ala Val Arg He Thr
130 135 140
Glu Gly Glu Glu Val His Glu Leu Ser Thr Gly Asp Cys Leu Arg Phe 145 150 155 160
Gly Pro Pro Arg Asp Thr Asp Phe Ala Asn Pro Thr Thr Val Ala Thr
165 170 175
Arg Tyr Leu Val Ala Leu Asp Lys Arg Val Pro Arg Ala 180 185
<210> 3
<211> 382
<212> PRT
<213> Corynebacterium glutamicum
<400> 3
Met Asn Phe Tyr Pro Pro Ser Val Pro He Asn Pro Ala Trp Arg Pro
1 5 10 15
Pro Thr Val Thr Val Gin Ala Gly Arg Pro Ala Arg Thr Pro Gly Ala
20 25 30
Pro Met Asn Pro Pro He Thr Leu Ser Ser Thr Tyr Val His Asp Ser
35 40 45
Glu Lys Ala Tyr Gly Arg Asp Gly Asn Asp Gly Trp Gly Ala Phe Glu
50 55 60
Ala Ala Met Gly Thr Leu Asp Gly Gly Phe Ala Val Ser Tyr Ser Ser 65 70 75 80
Gly Leu Ala Ala Ala Thr Ser He Ala Asp Leu Val Pro Thr Gly Gly
85 90 95
Thr Val Val Leu Pro Lys Ala Ala Tyr Tyr Gly Val Thr Asn He Phe
100 105 110
Ala Arg Met Glu Ala Arg Gly Arg Leu Lys Val Arg Thr Val Asp Ala
115 120 125
Asp Asn Thr Glu Glu Val He Ala Ala Ala Gin Gly Ala Asp Val Val
130 135 140
Trp Val Glu Ser He Ala Asn Pro Thr Met Val Val Ala Asp He Pro 145 150 155 160
Ala He Val Asp Gly Val Arg Gly Leu Gly Val Leu Thr Val Val Asp
165 170 175
Ala Thr Phe Ala Thr Pro Leu Arg Gin Arg Pro Leu Glu Leu Gly Ala
180 185 190
Asp He Val Leu Tyr Ser Ala Thr Lys Leu He Gly Gly His Ser Asp
195 200 205
Leu Leu Leu Gly Val Ala Val Cys Lys Ser Glu His His Ala Gin Phe
210 215 220
Leu Ala Thr His Arg His Asp His Gly Ser Val Pro Gly Gly Leu Glu 225 230 235 240
Ala Phe Leu Ala Leu Arg Gly Leu Tyr Ser Leu Ala Val Arg Leu Asp
245 250 255
Arg Ala Glu Ser Asn Ala Ala Glu Leu Ser Arg Arg Leu Asn Ala His
260 265 270
Pro Ser Val Thr Arg Val Asn Tyr Pro Gly Leu Pro Asp Asp Pro Gin
275 280 285
His Glu Lys Ala Val Arg Val Leu Pro Ser Gly Cys Gly Asn Met Leu
290 295 300
Ser Phe Glu Leu Asp Ala Thr Pro Glu Arg Thr Asp Glu He Leu Glu 305 310 315 320
Ser Leu Ser Leu Leu Thr His Ala Thr Ser Trp Gly Gly Val Glu Thr 325 330 335 Ala He Glu Arg Arg Thr Arg Arg Asp Ala Glu Val Val Ala Gly Val
340 345 350
Pro Met Thr Leu Cys Arg Val Ser Val Gly He Glu Asp Val Glu Asp
355 360 365
Leu Trp Glu Asp Leu Asn Ala Ser He Asp Lys Val Leu Gly 370 375 380
<210> 4
<211> 32
<212> DNA
<213> Artificial sequence
<220>
<223> Description of the artificial sequence: Primer orfR 20
<400> 4 gatctagaat tcaacatcgt ecgataggcc ag 32
<210> 5
<211> 40
<212> DNA
<213> Artificial sequence
<220>
<223> Description of the artificial sequence: Primer orfRmetZ del
<400> 5 ggtctggtta ctggctacga atgcagacaa taatgtcgct 40
<210> 6
<211> 32
<212> DNA
<213> Artificial sequence
<220>
<223> Description of the artificial sequence: Primer metZ 21
<400> 6 gatctagaat tccgcttccg agaatcaata cc 32
<210> 7
<211> 402
<212> DNA
<213> Artificial sequence
<220>
<223> Description of the artificial sequence: metRmetZ del Fragment 1
<400> 7 gatctagaat tcaacatcgt ecgataggcc agcgtctaat teagcagcga tttcggcagc 60 aagcccagcg ccattaatca gagcggtgaa ataaacatgg ttcatgatta tgtcaggacg 120 gtaattagac ttatgaeeag gtttaaggag gtcaccaggt tgaagccgcg ctattgttcc 180 gtggaaaag.g gggccctgat etagctgatt attcatcgca gtaagcgett tcggtaggtg 240 ggtgaatcat cgtagtcttc cgagccccgt gacccgatcc gttttgtgca atccaatgct 300 actcccacag agcgggctac tttctctaaa aatgttctca tagtagataa aattgttctt 360 aaagcgacat tattgtctgc attcgtagcc agtaaccaga cc 402
<210> 8
<211> 982
<212> DNA
<213> Artificial sequence
<220>
<223> Description of the artificial sequence: metRmetZ del Fragment 2
<400> 8 gatctagaat tcaacatcgt ecgataggcc agcgtctaat teagcagcga tttcggcagc 60 aagcccagcg ccattaatca gagcggtgaa ataaacatgg ttcatgatta tgtcaggacg 120 gtaattagac ttatgaeeag gtttaaggag gtcaccaggt tgaagccgcg ctattgttcc 180 gtggaaaagg gggccctgat etagctgatt attcatcgca gtaagcgett tcggtaggtg 240 ggtgaatcat cgtagtcttc cgagccccgt gacccgatcc gttttgtgca atccaatgct 300 actcccacag agcgggctac tttctctaaa aatgttctca tagtagataa aattgttctt 360 aaagcgacat tattgtctgc attcgtagcc agtaaccaga ccttcagtgt ttggttgcca 420 ctccagtgct ggggcgacat gatcagcgaa gttcttcagg atcgacgcgt tgatctcaac 480 acccatttgg ttgggggcgg tgagcatcaa ggtgtcggct tccatcacag ctttgtcttc 540 cttgagctgg tcgatgagtt catcgggact tccggcgtag ctgcgaccga acgtggatcg 600 ggtatcatcc aggattccta cttggtcacc gccttgtccc tgaagtccga aaagctcacg 660 gtcgcggtcg gtgacgatcg ggaagatgga cctggagaca gacacacgtg gggtccaatc 720 gtgtccggct tctttccaag cttggcggta gaacgcgatt tgatcggctt gcagatcσcc 780 gaaggattgg ccggtggctt cggcgacgag ggtggagctc atcaagttaa cgccatcgcg 840 tgctgcttgt tcggcggtgt tgtgggaaec ggcgccccac caaatggatt tacgeaggtc 900 aggatcatgc gggaagatcg gcaggggagt gcccggatgg tagaggcgtg ggtattgatt 960 ctcggaagcg gaattctaga tc 982

Claims

What is claimed is:
1. An isolated polynucleotide from coryneform bacteria, which comprises a polynucleotide sequence which codes for the metR and/or metZ genes, chosen from the group consisting of
a) polynucleotide which is identical to the extent of at least 70% to a polynucleotide which codes for a polypeptide which comprises the amino acid sequence of SEQ ID No. 2,
b) polynucleotide which is identical to the extent of at least 70% to a polynucleotide which codes for a polypeptide which comprises the amino acid sequence of SEQ ID No. 3,
c) polynucleotide which codes for a polypeptide which comprises an amino acid sequence which is identical to the extent of at least 70% to the amino acid sequence of SEQ ID No.- 2* •
d) polynucleotide which codes for a polypeptide which comprises an amino acid sequence which is identical to the extent of. at least 70% to the amino acid sequence of SEQ ID No. 3,
e) polynucleotide which is complementary to the polynucleotides of a) , b) , c) or d) , and
f) polynucleotide comprising at least 15 successive nucleotides of the polynucleotide sequence of a) , b) , c) , d) or e) .
2. A polynucleotide as claimed in claim 1, wherein the polynucleotide is a preferably recombinant DNA which is capable of replication in coryneform bacteria.
3. A polynucleotide as claimed in claim 1, wherein the polynucleotide is an RNA.
. A polynucleotide as claimed in claim 2, comprising the nucleic acid sequence as shown in SEQ ID No. 1.
5. A DNA as claimed in claim 2 which is capable of replication, comprising
(i) the nucleotide sequence shown in SEQ ID No. 1, or
(ii) at least one sequence which corresponds to sequence (i) within the range of the degeneration of the genetic code, or
(iii) at least one sequence which hybridizes with the sequence complementary to sequence (i) or (ii) , and optionally
(iv) sense mutations of neutral function in (i) .
6. A DNA as claimed in claim 5 which is capable of replication, wherein the hybridization of sequence (iii) is carried out under a stringency corresponding to at most 2x SSC.
7. A polynucleotide sequence' as claimed' in claim 1, which codes for a polypeptide which comprises the amino acid sequence in SEQ ID No. 2 and/or SEQ ID No. 3.
δ . A coryneform bacterium in which the metR gene and/or metZ gene is or are attenuated, in particular eliminated.
9. A process for the fermentative preparation of L-amino acids, in particular L-methionine, which comprises carrying out the following steps:
a) fermentation of the coryneform bacteria which produce the desired L-amino acid and in which at least the metR and/or metZ gene or nucleotide sequences which code for them are attenuated. b) concentration of the L-amino acid in the medium or in the cells of the bacteria, and
c) isolation of the L-amino acid.
10. A process as claimed in claim 9, wherein bacteria in which further genes of the biosynthesis pathway of the desired L-amino acid are additionally enhanced are employed.
11. A process as claimed in claim 9, wherein bacteria in which the metabolic pathways which reduce the formation of the desired amino acid are at least partly eliminated are employed.
12. A process as claimed in claim 9, wherein the expression of the polynucleotide (s) which code(s) for the metR and/or the metZ gene is reduced or attenuated.
13. A process as claimed in claim 9, wherein the catalytic properties of the polypeptides (enzyme protein) for which the polynucleotides metR and/or metZ code are increased.
14. A process as claimed in claim 9, wherein for the preparation of L-amino acids, in particular L- methionine, coryneform microorganisms in which at the same time one or more of the genes chosen from the group consisting of
14.1 the lysC gene which codes for a feed back resistant aspartate kinase,
14.2 the gap gene which codes for glycerolaldehyde 3-phosphate dehydrogenase,
14.3 the pyc gene which codes for pyruvate carboxylase,
14.4 the tpi gene which codes for triose phosphate isomerase
14.5 the metA gene which codes for homoserine 0- acetyltransferase
14.6 the metB gene which codes for cystathionine gamma-synthase
14. the pgk gene which codes for 3-phosphoglycerate kinase
14. δ the aecD gene which codes for cystathionine gamma-lyase
14.9 the glyA gene which codes for serine hydroxymethyltransferase
14.10 the metY gene which codes for 0- acetylhomoserine sulfhydrylase
is or are enhanced or over-expressed are fermented.
15. A process as claimed in claim 9, wherein for the preparation of L-amino acids, in particular L- methionine, coryneform microorganisms in which at the same time one or more of the genes chosen from the group consisting of
15.1 the thrB gene which codes for homoserine kinase
15.2 the ilvA gene which codes for threonine dehydratase
15.3 the thrC gene which codes for threonine synthase
15.4 the ddh gene which codes for meso- diaminopimelate D-dehydrogenase
15.5 the pck gene which codes for phosphoenol pyruvate carboxykinase
15.6 the pgi gene which codes for glucose 6- phosphate isomerase
15.7 the poxB gene which codes for pyruvate oxidase
is or are attenuated are fermented.
16. A coryneform bacterium which contains a vector which carries a polynucleotide as claimed in claim If.
17. A process as claimed in one or more of claims 9 to 15, wherein microorganisms of the species Corynebacterium glutamicum are employed.
18. A process as claimed in claim 17, wherein the Corynebacterium glutamicum strain ATCC13032deltametRmetZ is employed.
19. A process for the preparation of an L-methionine- containing animal feedstuffs additive from fermentation broths, which comprises the steps
a) culture and fermentation of an L-methionine- producing microorganism in a fermentation medium;
b) removal of water from the L-methionine-containing fermentation broth (concentration) ;
c) removal of an amount of 0 to 100 wt.% of the biomass formed during the fermentation; and
d) drying of the fermentation broth obtained according to b) and/or c) to obtain the animal feedstuffs additive in the desired powder or granule form.
20. A process as claimed in claim 19, wherein microorganisms in which further genes of the biosynthesis pathway of L-methionine are additionally enhanced are employed.
21. A process as claimed in claim 20, wherein microorganisms in which the metabolic pathways which reduce the formation of L-methionine are at least partly eliminated are employed.
22. A process as claimed in claim 21, wherein the expression of the polynucleotides which code for the metR and/or metZ gene is attenuated, in particular eliminated.
23. A process as claimed in one or more of claims 19 to 22, wherein microorganisms of the species Corynebacterium glutamicum are employed.
24. A process as claimed in claim 23, wherein the Corynebacterium glutamicum strain ATCC13032deltametRmetZ is employed.
25. A process as claimed in claim 19, wherein one or more of the following steps is or are additionally also carried out:
e) addition of one or more organic substances, including L-methionine and/or D-methionine and/or the racemic mixture D, L-methionine, to the products obtained according to b) , c) and/or d) ;
f) addition of auxiliary substances chosen from the group consisting of silicas, silicates, stearates, grits and bran to the substances obtained according to b) to e) for stabilization and to increase the storability; or
g) conversion of the substances obtained according to b) to f) into a form stable to an animal stomach, in particular rumen, by coating with film-forming agents.
26. A process as claimed in claim 19 or 25, wherein a portion of the biomass is removed.
27. A process as claimed in claim 26, wherein up to 100% of the biomass is removed.
28. A process as claimed in claim 19 or 25, wherein the water content is up to 5 wt.%.
29. A process as claimed in claim 28, wherein the water content is less than 2 wt.%.
30. A process as claimed in claims 25, 26, 27, 28 or 29, wherein the film-forming agents are metal carbonates, silicas, silicates, alginates, stearates, starches, gums or cellulose ethers.
31. An animal feedstuffs additive prepared as claimed in claims 19 to 30.
32. An animal feedstuffs additive as claimed in claim 31, which comprises 1 wt.% to 80 wt.% L-methionine, D- methionine, D, L-methionine or a mixture thereof, based on the dry weight of the animal feedstuffs additive.
33. A process for discovering RNA, cDNA and DNA in order to isolate nucleic acids, or polynucleotides or genes which code for O-succinylhomoserine sulfhydrylase
(metZ) and/or the transcription activator MetR or have a high similarity with the sequence of the 0- succinylhomoserine sulfhydrylase (metZ) gene or of the transcription activator MetR, which comprises employing the polynucleotide comprising the polynucleotide sequences as claimed in claims 1, 2, 3 or 4 as hybridization probes.
EP01960503A 2000-09-02 2001-07-17 Nucleotide sequences which code for the metr and metz genes Withdrawn EP1313757A2 (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
DE10043335 2000-09-02
DE10043335 2000-09-02
DE10109688A DE10109688A1 (en) 2000-09-02 2001-02-28 New nucleotide sequences coding for the metR and metZ genes
DE10109688 2001-02-28
PCT/EP2001/008221 WO2002018430A2 (en) 2000-09-02 2001-07-17 Nucleotide sequences which code for the metr and metz genes

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Publication number Priority date Publication date Assignee Title
KR100878334B1 (en) * 1999-06-25 2009-01-14 백광산업 주식회사 Corynebacterium Glutamicum Genes Encoding Metabolic Pathway Proteins
PL201534B1 (en) * 1999-06-25 2009-04-30 Paik Kwang Ind Co New insulated particles of nucleic acid, vectors and host cells, insulated polypeptides and their production methods, the manner of production of high-value chemical compounds and the manner of disgnosing of presence or activity of Corynebacterium diphteri
JP4623825B2 (en) * 1999-12-16 2011-02-02 協和発酵バイオ株式会社 Novel polynucleotide

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
See references of WO0218430A2 *

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