EP1278454A2 - Optical computed tomography in a turbid media - Google Patents
Optical computed tomography in a turbid mediaInfo
- Publication number
- EP1278454A2 EP1278454A2 EP01933109A EP01933109A EP1278454A2 EP 1278454 A2 EP1278454 A2 EP 1278454A2 EP 01933109 A EP01933109 A EP 01933109A EP 01933109 A EP01933109 A EP 01933109A EP 1278454 A2 EP1278454 A2 EP 1278454A2
- Authority
- EP
- European Patent Office
- Prior art keywords
- light
- distribution function
- providing
- tissue
- light distribution
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
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Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/17—Systems in which incident light is modified in accordance with the properties of the material investigated
- G01N21/47—Scattering, i.e. diffuse reflection
- G01N21/4795—Scattering, i.e. diffuse reflection spatially resolved investigating of object in scattering medium
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61B—DIAGNOSIS; SURGERY; IDENTIFICATION
- A61B5/00—Measuring for diagnostic purposes; Identification of persons
- A61B5/0059—Measuring for diagnostic purposes; Identification of persons using light, e.g. diagnosis by transillumination, diascopy, fluorescence
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61B—DIAGNOSIS; SURGERY; IDENTIFICATION
- A61B5/00—Measuring for diagnostic purposes; Identification of persons
- A61B5/0059—Measuring for diagnostic purposes; Identification of persons using light, e.g. diagnosis by transillumination, diascopy, fluorescence
- A61B5/0073—Measuring for diagnostic purposes; Identification of persons using light, e.g. diagnosis by transillumination, diascopy, fluorescence by tomography, i.e. reconstruction of 3D images from 2D projections
Definitions
- X-ray computed tomography has been very successful in imaging internal structures of the human body. It has provided an accurate, micro-resolution and real-time medical imaging tool for clinical use.
- CT computed tomography
- the use of X-rays has several disadvantages.
- the contrast is low for certain kinds of tumors, such as early stage breast cancer.
- the misdiagnose rate for X-ray mammography is high and
- X-rays are mutagenic.
- imaging techniques based on optical photons have attracted significant interest.
- photons In the spectral region between 700 and 900 nm, called the therapeutic window, photons do not give rise to mutagenic effects, and they can penetrate deeply into tissues, due to the weak absorption of light at these wavelengths.
- Sensitivity to optical contrast is high and spectroscopic info ⁇ nation can be obtained. Further, contrast can be enhanced by injecting exogenous dyes which target tumor cells.
- the information provided by optical photons can complement that of X-ray CT, and perhaps provide an alternative diagnostic tool for detecting tumors and other abnormalities inside the body.
- Weighting factors for the contribution of individual voxels to the measurement have also been calculated using Monte Carlo simulations and employed in the inverse model.
- the present invention relates to the use of series expansion methods to the optical regime. Using an early time detection approach, three dimensional images of a tissue can be reconstructed by taking into account the effects of turbidity.
- the problem can be understood by comparing the propagation of optical photons and X-rays in human tissue.
- X-rays traversing the body Figure la
- the propagation of optical photons has a three dimensional spread.
- the distribution of optical photon paths can be visualized as a tube connecting the source and the detector ( Figure lb).
- the width of the cross section of the tube varies according to the time at which arriving photons are collected.
- an optical CT procedure can be employed that is a modification of that used in X-ray CT.
- the early arriving photons are analogous to X-ray photons. They undergo a smaller number of scattering events in comparison with highly diffusive photons, and thus preserve a significant amount of spatial information.
- signal levels for early arriving photons can be relatively high. Measurements taken using early time detection have higher resolution compared to those obtained with continuous wave (CW) and frequency-domain techniques. Sharp images can be reconstructed using the concept of photon path density. As is well known, the diffusion approximation solution does not well describe the early arriving photons.
- the image reconstruction method of the present invention is based on the use of a series expansion method in the optical regime, where scattering is dominant and the distribution of photon paths between source and detector must be taken into account.
- a PSF is used to generate a weighting function matrix.
- weighting functions have been discussed and calculated using the diffusion approximation, the microscopic Beer-Lambert law, and Monte Carlo simulations.
- the use of the PSF provides guidance into the choice of weighting functions.
- the physical interpretation is clearer in terms of the PSF, and different theories about photon migration can be tested because they predict different PSF's.
- Eq. (12) there are actually two sets of weighting functions, one for scattering contrast and one for absorption contrast. For example, tumors in breast tissue exhibit both absorption and scattering contrast. The early portion of the photon migration curve is more sensitive to the scattering contrast than the absorption contrast.
- optical CT The resolution of optical CT is restricted by several factors, such as the effects of scattering and the underdetermined nature of the reconstruction procedures. Additionally, the total number of projections and measurements can be increased, and a fan-beam geometry can be used to improve data collection efficiency. Fiberoptic systems can be used for delivery and/or collection of light from the tissue of a patient under examination. Refined time-domain photon migration instruments, implemented with a computer using reconstruction programs can provide optical CT images with high quality in the breast, the brain and elsewhere in the body.
- Figures 1 A and IB are schematic diagrams employing an algebraic reconstruction technique for Optical CT in which the sample under study is divided into N x N x N vowels and the absorption distribution is represented by the average absorption within each voxel.
- Figures 2A and 2B illustrate each voxel being assigned a weighting factor including for the X-ray, in which the voxel on the trajectory has 100% contribution, while off the trajectory has 0% contribution and for the optical photons, the weighting factor is determined by the photon path distribution, respectively.
- Figures 3 A and 3B are schematic diagrams of systems for performing optical computed tomography in accordance with the invention.
- Figure 4 illustrates an example of the dimension of the scattering medium and the scanning geometry.
- Figures 7A-7D are reconstructed images with one embedded object including (A) reconstruction with direct X-ray algorithm; (B) reconstruction with diffusion approximation; (C) reconstruction with causality correction; (D) the exact configuration.
- Figures 8A-8D are images of two embedded objects including (A) Reconstruction with direct X-ray algorithm; (B) reconstruction with diffusion approximation; (C) reconstruction with causality correction; (D) the exact configuration.
- Reconstruction with the direct X-ray algorithm does not resolve the two embedded objects.
- the reconstructions with diffusion approximation overdo the de-convolution and result in smaller images. The smaller object is invisible from the 3D view.
- Figure 10 illustrates a process sequence of a preferred embodiment of the invention. DETAILED DESCRIPTION OF THE INVENTION
- I(r) I Q exp "ff J r n dl ⁇ * a(r')
- Equation (1) can be rewritten as: (2)
- the above line integral is often referred to as the Radon transform.
- the presence of tumors creates optical heterogeneity which appears as a local variation of the scattering and the absorption properties of the tissue. For early stage tumors, these changes can be considered as small perturbations.
- phase function satisfies:
- ⁇ a and ⁇ s are the average absorption and scattering coefficients, respectively: ⁇ ⁇ (r)(« t a ) zca ⁇ j j[ s (r)( « ⁇ s ) are the perturbations caused by the tumors.
- the local variation of the phase function's • ⁇ ') from the global phase unction's • s') may not be small for some angles, but Eq. (4) requires that such variations cancel each other after integrating over all solid angles.
- treat ⁇ s (r, s ⁇ s ) as a small perturbation.
- Eq. (3) is the equation for the Green's function G (r,t
- r 0 ,t 0 ) Gf(r,t°
- Equation (9) can be solved through the adjoint equation of Eq. (8), which is: (10)
- Eq. (12) The first term on the right hand side of Eq. (12) is the correction due to absorption variations, the second and the third terms contain the correction due to scattering variations; the third term also includes an extra correction due to phase function variations.
- the last term in Eq. (12) is the surface integral and is related to the boundary condition. For boundary conditions commonly used, such as the zero-boundary condition in our system described below, the surface integral contributes at higher order and can be discarded, hi order to simplify the fo ⁇ nulation, define the point spread function as:
- PSF(r,t;r';r 0 ,t 0 ) 4 ⁇ ⁇ dt'G (r,t
- PSF(r,t; r' ; r 0 , t 0 ) is the probability that a photon is injected at the source point r 0 at time t 0> passes through the field point r' before time t, and is collected by the detector at point r at time t. It represents the photon path distribution at time t between the light source and the detector.
- the photon path distribution in the transverse direction i.e., direction perpendicular to r-r 0
- Eq. (13) can be calculated using various models.
- Three examples are the path integral solutions, the random walk solution, and the conventional diffusion approximation solution.
- Further details regarding time gated imaging methods can be found in U.S. patent No. 5,919,140, the entire contents of which is incorporated herein by reference. In fact, these reconstructions show that the conventional diffusion solution is inadequate for imaging with early arriving photons. It predicts a point spread function which is too wide and renders images which are too small. A solution satisfying causality is required.
- the diffusion approximation consider the diffusion approximation:
- r 0 ,t 0 ) - ⁇ G (0) (r,t
- ⁇ tr is the transport scattering property defined as
- r o t o ) -JjV ⁇ fl (r , )J ⁇ , [G (o) (r,t
- the present invention involves the series expansion method and the algebraic reconstruction technique (ART) for optical CT.
- the volume to be imaged is split into
- Each voxel is assigned a value representing the local average of the absorption distribution.
- the imaging problem is 2D in the case of X-ray.
- the linear attenuation in Eq. (2) is then simplified to a summation of the voxel values along the source-detector line.
- the ray sum can be exactly expressed as:
- j is the data of theyth measurement:
- w is a geometric factor related to the oblique angle of they ' th measurement, and it equals the segment length of they ' th ray witliin voxel i; and
- ⁇ is the local average of the absorption within voxel i.
- the summation on the right hand side of Eq. (18) is that of the N 2 voxels on the detection plane, i the case of X-rays, the factor by is given as:
- Equation (20) can be rewritten in a compact matrix form
- y Rx + n
- y the measurement vector (dimension M)
- x is the image vector (dimension N 3 )
- R is the projection matrix containing geometric and photon path information (dimension M x N 3 )
- n denotes the error vector.
- the estimation of the image vector is usually performed using optimization criteria, based on the error between forward model predictions and experimental data, as well as a priori information about the imaging region.
- r is a parameter often called the signal-to-noise ratio in the literature
- ⁇ 0 is the pre-knowledge for the image vector (N 3 x 1) and also used as the initial estimate of the image, and 1...11 2 denotes the module square for the vector. Keeping the second term small ensures that the picture is not too far from the pre-knowledge, and keeping the first term small ensures that the picture is consistent with the measurements.
- One iterative procedure to minimize Eq. (20) is to introduce two sequences of vectors, x (k) and u (k) , of dimensions N 3 and M, respectively. Initially, x (0) is set equal to ⁇ 0 and u (0) to a zero vector.
- the iterative step (G.T. Herman, Image Reconstruction From Projections: The Fundamentals of Computerized Tomography (Academic Press, New York, New York, 1980)) which is incorporated herein by reference in its entirety is given by:
- the light source 102 was a Coherent Mira 900 mode-locked Ti:sapphire laser operated in femto-mode and pumped by a Coherent Innova 400 multiline argon ion laser 104.
- the wavelength was 800 nm, and the repetition rate was 76 MHZ.
- the pulse width was -150 fs.
- the detection system 106 was a Hamamatsu streak camera C5680 with M5675
- Synchroscan Unit A small portion of the laser beam was deflected by a quartz plate to a fast photodiode 108 (Hamamatsu C 1808-02), which generates the triggering signal 110 for the streak camera.
- the cubic glass container was mounted on a translation stage 112 used to actuate relative movement between the source, the detector and the object to be scanned.
- a Pentium-II computer 120 served as a central controlling and data acquisition unit, i order to monitor the laser power drift during the scan, aDT2801-A card (Data Translation, h e.) was installed on the computer and programmed to record the laser power voltage from the control box of the light source, and it also served to drive the stepper motor of the translation stage.
- Total automation of data acquisition for a full line scan was achieved through programming the user interface of the streak camera software.
- the streak camera was operated in analog mode. It converted the temporal evolution of light signals into vertical streak images.
- the transmitted light was collected with four coherent fiber bundles 130. Each fiber bundle had a 500 ⁇ m core diameter and consisted of ten thousand single mode silica fibers. The proximal ends of the four fibers were bundled together to increase the collection area.
- the overall time resolution of the detection system was set to 30 ps.
- the container was placed in the sample holder on the translation stage. Multiple objects were embedded inside the turbid medium at fixed positions..
- the sample holder was designed so that the top, bottom, left and right boundaries of the container were totally black.
- the laser pulses were delivered into the medium at the front side, and the transmitted signals were collected at the opposite side.
- the incoming laser beam and the collection fibers were aligned in a coaxial geometry.
- Surface scans were conducted on the XZ and YZ directions, so that a 3D image of the absorption distribution could be reconstructed.
- the scan area was a 4cm x 4cm square along each direction.
- the scans were 2 mm per step in the horizontal and vertical directions, resulting in 2 projections, 882 total scan measurements.
- the data acquisition time for each point was 8s. Either one or two opaque objects were embedded in the medium. In each case, the scans were first carried out for the XZ plane, and then the container was rotated by 90° and the scans continued for the
- the calculation of the point spread function requires knowledge about the average scattering and absorption properties of the scattering medium ( ⁇ ' ⁇ and ⁇ a .
- the coaxial transmission signal of a 2.2 ns time window was collected, with the absorbers removed from the scattering medium and the source- detector aligned at the center of the X-surface. This time-dependent curve was fitted using the diffusion approximation solution with zero-boundary condition.
- the projection intensity diagrams can be easily created by plotting the contour map of the intensities of all the 882 time evolution curves at the same time point. To achieve higher counts and reduce noise, such intensities can be summations of counts over a time window comparable to the time resolution of the detecting system.
- the selection of the time point is based on the trade-off of spatial resolution and signal-to-noise level. The early time portion has better spatial resolution, but the low signal level suffers from relatively higher noise and will distort the image. The later time portion has a higher signal level, but the spatial resolution goes down.
- the selections of the time windows for summation are the following: for the one object configuration, 534-600 ps was the time window; for the two object configuration, 607-657 ps was the time window. Here time zero is the time of flight.
- the projection intensity diagrams are presented in Figures 5. As expected, the projection lines crossing the absorbers have weaker intensity. The absorbers appear as shadows on the projection intensity diagrams.
- the projections of one embedded absorber (Figures 5A and 5B) are different from those of two embedded absorbers ( Figures 5C and 5D). Figures 5A-5D are referred to as the zero-th order images. They aheady show features such as the central positions of the embedded objects, though the images are scrambled due to scattering.
- the image reconstruction procedure was then applied in two steps.
- the reconstructions were computed with point spread functions calculated from both the diffusion approximation and the causality corrected solutions (see below).
- the number of iteration steps was set to 2 x 10 5 .
- the number of iteration steps was increased to 2 x 10 5 without observing
- the second step involves the calculation of the PSF from solutions to the transport equation.
- the diffusion approximation solution is widely used in the literature. However, it is well known that this solution violates causality and breaks down in the early time regime. Solutions incorporating causality have been worked out for models based on random walk and path integral theories.
- a Green's function which incorporates causality and is valid for early arriving photons has been used. This Green's function is constructed from the diffusion approximation Green's function G(r , t
- Figures 6A-6D show the point spread functions calculated with the diffusion approximation solution and with the causality corrected solution. Note that all contour maps in Figures 6A-6D correspond to the time window of the experimental data for the two-object case. The point spread function calculated using the diffusion approximation is wider than that using the causality modified procedure.
- the reconstructed images for the one object configuration exhibit some distortions.
- the image reconstructed with the causality correction give correct sizes of the embedded objects.
- the voxel values off the objects are nearly zero which naturally results from the inverse procedure.
- the size and the position of the 8-m ⁇ n object and the size of the 6-rnm object are correct, while the position of the 6-mm object is off from its actual position by 2 mm. This may indicate that a cross-talk exists in the inverse when two objects are embedded.
- the point spread function calculated with the conventional diffusion approximation solution is too wide for the early time window of our data.
- the reconstructed images in this case are too small compared with the actual size of the objects.
- the smaller absorber is basically invisible in the reconstructed image.
- the same calculations done with the causality correction provide improved resolution.
- Figure 10 illustrates a process sequence 200 in accordance with a preferred embodiment of the invention.
- a light distribution function and/or any reference data in electronic memory and programming 204 the computer to process the collected image data for a particular type of anatomy or tissue structure such as a concerous lesion
- the patient or biopsied sample is scanned 206 with an endoscope or probe.
- the collected data is processed 208 to generate an image for display and for further processing 210.
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Abstract
Description
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Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US20193800P | 2000-05-05 | 2000-05-05 | |
| US201938P | 2000-05-05 | ||
| PCT/US2001/014643 WO2001085022A2 (en) | 2000-05-05 | 2001-05-04 | Optical computed tomography in a turbid media |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| EP1278454A2 true EP1278454A2 (en) | 2003-01-29 |
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ID=22747900
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| EP01933109A Withdrawn EP1278454A2 (en) | 2000-05-05 | 2001-05-04 | Optical computed tomography in a turbid media |
Country Status (6)
| Country | Link |
|---|---|
| EP (1) | EP1278454A2 (en) |
| JP (1) | JP2003532873A (en) |
| CN (1) | CN1427690A (en) |
| AU (1) | AU2001259559A1 (en) |
| CA (1) | CA2408239A1 (en) |
| WO (1) | WO2001085022A2 (en) |
Families Citing this family (23)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US7609884B1 (en) | 2004-12-23 | 2009-10-27 | Pme Ip Australia Pty Ltd | Mutual information based registration of 3D-image volumes on GPU using novel accelerated methods of histogram computation |
| US7623732B1 (en) | 2005-04-26 | 2009-11-24 | Mercury Computer Systems, Inc. | Method and apparatus for digital image filtering with discrete filter kernels using graphics hardware |
| JP2010512904A (en) * | 2006-12-19 | 2010-04-30 | コーニンクレッカ フィリップス エレクトロニクス エヌ ヴィ | Imaging opaque media |
| US8392529B2 (en) | 2007-08-27 | 2013-03-05 | Pme Ip Australia Pty Ltd | Fast file server methods and systems |
| US10311541B2 (en) | 2007-11-23 | 2019-06-04 | PME IP Pty Ltd | Multi-user multi-GPU render server apparatus and methods |
| US8319781B2 (en) | 2007-11-23 | 2012-11-27 | Pme Ip Australia Pty Ltd | Multi-user multi-GPU render server apparatus and methods |
| WO2009067675A1 (en) | 2007-11-23 | 2009-05-28 | Mercury Computer Systems, Inc. | Client-server visualization system with hybrid data processing |
| US9904969B1 (en) | 2007-11-23 | 2018-02-27 | PME IP Pty Ltd | Multi-user multi-GPU render server apparatus and methods |
| WO2009067680A1 (en) | 2007-11-23 | 2009-05-28 | Mercury Computer Systems, Inc. | Automatic image segmentation methods and apparartus |
| CN101543398B (en) * | 2008-03-26 | 2011-04-13 | 中国科学院自动化研究所 | Target detection device based on exponential photon density dynamic adjustment |
| CN102144154B (en) * | 2008-10-01 | 2015-04-22 | 东卡莱罗纳大学 | Methods and systems for optically characterizing a turbid material using a structured incident beam |
| US10540803B2 (en) | 2013-03-15 | 2020-01-21 | PME IP Pty Ltd | Method and system for rule-based display of sets of images |
| US10070839B2 (en) | 2013-03-15 | 2018-09-11 | PME IP Pty Ltd | Apparatus and system for rule based visualization of digital breast tomosynthesis and other volumetric images |
| US8976190B1 (en) | 2013-03-15 | 2015-03-10 | Pme Ip Australia Pty Ltd | Method and system for rule based display of sets of images |
| US9509802B1 (en) | 2013-03-15 | 2016-11-29 | PME IP Pty Ltd | Method and system FPOR transferring data to improve responsiveness when sending large data sets |
| US11183292B2 (en) | 2013-03-15 | 2021-11-23 | PME IP Pty Ltd | Method and system for rule-based anonymized display and data export |
| US11244495B2 (en) | 2013-03-15 | 2022-02-08 | PME IP Pty Ltd | Method and system for rule based display of sets of images using image content derived parameters |
| CN103169452B (en) * | 2013-04-03 | 2015-01-14 | 华中科技大学 | Fast multipole boundary element method for processing diffusion optical tomography imaging forward direction process |
| US11599672B2 (en) | 2015-07-31 | 2023-03-07 | PME IP Pty Ltd | Method and apparatus for anonymized display and data export |
| US9984478B2 (en) | 2015-07-28 | 2018-05-29 | PME IP Pty Ltd | Apparatus and method for visualizing digital breast tomosynthesis and other volumetric images |
| US10909679B2 (en) | 2017-09-24 | 2021-02-02 | PME IP Pty Ltd | Method and system for rule based display of sets of images using image content derived parameters |
| NL2020483B1 (en) * | 2018-02-22 | 2019-08-29 | Univ Delft Tech | Method and apparatus for optical coherence projection tomography |
| US20220202292A1 (en) * | 2019-04-30 | 2022-06-30 | Atonarp Inc. | Measuring system |
Family Cites Families (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5919140A (en) | 1995-02-21 | 1999-07-06 | Massachusetts Institute Of Technology | Optical imaging using time gated scattered light |
| US5931789A (en) * | 1996-03-18 | 1999-08-03 | The Research Foundation City College Of New York | Time-resolved diffusion tomographic 2D and 3D imaging in highly scattering turbid media |
-
2001
- 2001-05-04 AU AU2001259559A patent/AU2001259559A1/en not_active Abandoned
- 2001-05-04 CN CN 01809074 patent/CN1427690A/en active Pending
- 2001-05-04 WO PCT/US2001/014643 patent/WO2001085022A2/en not_active Ceased
- 2001-05-04 CA CA002408239A patent/CA2408239A1/en not_active Abandoned
- 2001-05-04 JP JP2001581684A patent/JP2003532873A/en active Pending
- 2001-05-04 EP EP01933109A patent/EP1278454A2/en not_active Withdrawn
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| Title |
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| See references of WO0185022A2 * |
Also Published As
| Publication number | Publication date |
|---|---|
| WO2001085022A2 (en) | 2001-11-15 |
| CA2408239A1 (en) | 2001-11-15 |
| CN1427690A (en) | 2003-07-02 |
| AU2001259559A1 (en) | 2001-11-20 |
| WO2001085022A3 (en) | 2002-04-04 |
| JP2003532873A (en) | 2003-11-05 |
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