EP1141724A1 - Nmr spectroscopy method - Google Patents
Nmr spectroscopy methodInfo
- Publication number
- EP1141724A1 EP1141724A1 EP99963638A EP99963638A EP1141724A1 EP 1141724 A1 EP1141724 A1 EP 1141724A1 EP 99963638 A EP99963638 A EP 99963638A EP 99963638 A EP99963638 A EP 99963638A EP 1141724 A1 EP1141724 A1 EP 1141724A1
- Authority
- EP
- European Patent Office
- Prior art keywords
- xenon
- biological molecule
- assay
- nmr
- hyperpolarised
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/58—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01R—MEASURING ELECTRIC VARIABLES; MEASURING MAGNETIC VARIABLES
- G01R33/00—Arrangements or instruments for measuring magnetic variables
- G01R33/20—Arrangements or instruments for measuring magnetic variables involving magnetic resonance
- G01R33/44—Arrangements or instruments for measuring magnetic variables involving magnetic resonance using nuclear magnetic resonance [NMR]
- G01R33/46—NMR spectroscopy
- G01R33/465—NMR spectroscopy applied to biological material, e.g. in vitro testing
Definitions
- This invention is concerned with nuclear magnetic resonance (NMR) spectroscopy and/or 5 NMR imaging.
- the technique involves observing the spectrum/image of a NMR active nuclear species in vitro in order to obtain information about the environment in which the species is present.
- the spectra of NMR active nuclei vary depending on their environment, and this is reported in the literature (PNAS, 93,12932-6, 1996).
- Noble gases having non-zero nuclear spin can be hyperpolarised, i.e. have their polarisation enhanced over the equilibrium polarisation, e.g. by the use of circularly polarised light.
- Preferred techniques for hyperpolarisation include spin exchange with an optically pumped alkali metal vapour and metastability exchange.
- Noble gases to which this technique can be applied include 3 He and 129 Xe. As described by M S Albert et al in US Patent 5,545,396, the
- 15 technique can be used to prepare hyperpolarised noble gases that can be administered by inhalation for magnetic resonance imaging of the human body.
- Xenon is chemically inert and has hydrophobic properties, and is capable of being weakly bound by hydrophobic regions of biological molecules (PNAS, 78, No 8, 4946-9, August 20 1981; Abstracts of the 11 ⁇ Annual Meeting of the Society for Magnetic Resonance in Medicine (1992) page 2104). Thus it is possible to "label" biological molecules with xenon.
- This invention concerns the method of labelling biological molecules with hyperpolarised 129 Xe. All macromolecules have a number of discrete hydrophobic and hydrophilic sites. Xenon 25 will bind by hydrophobic interactions to hydrophobic sites with different affinity. The xenon labels the biological compound by becoming weakly bound to it, e.g. at specific hydrophobic sites on a surface of or within a cavity of a protein or other macromolecule.
- the NMR sensitivity of hyperpolarised xenon is highly increased compared to non- 30 hyperpolarised xenon.
- Another advantage of the present invention is the reversible and nondestructive nature of the bond between the xenon and the biological molecule.
- a further advantage is that the forming of the "bond" and subsequent measurement may be repeated if needed.
- xenon is a gas (condensation temperature of -106°C), it and may easily and rapidly be separated from the biological molecule if necessary.
- xenon is essential chemically inert and will not adversely effect the biological molecule.
- One embodiment of the invention thus provides an in vitro method which comprises labelling a biological molecule with hyperpolarised xenon, and observing a magnetic resonance spectrum and/or image of the hyperpolarised xenon in the environment of the biological molecule.
- the spectrum/image provides information about the environment(s) at which atoms of xenon are bound to the biological molecule.
- Any conformational change of the biological molecule resulting e.g. from the binding (or the disappearance) of a ligand (e.g. a lipid, carbohydrate, peptide, polypeptide, nucleic acid or any sort of drug) or cleavage by an enzyme will cause an alteration in the xenon NMR spectrum.
- a ligand e.g. a lipid, carbohydrate, peptide, polypeptide, nucleic acid or any sort of drug
- Each hydrophobic site in the biological molecule may give rise to a specific and characteristic NMR shift.
- a further embodiment of the present invention is to take NMR "fmgerprint(s)" of a known biological molecule. These fingerprints can subsequently be used to identify unknowns by direct comparison in a manner similar to infra-red spectroscopy.
- a biological molecule as defined by the present invention is a monomeric or polymeric molecule that is present in biological systems or that is artificially introduced and is biologically active in such systems.
- Biological molecules include lipids, sugars and polysaccharides, nucleic acids (DNA, RNA), nucleosides, oligonucleosides, polynucleosides, nucleotides, oligonucleotides, polynucleotides, enzymes, vitamins and particularly peptides, polypeptides and proteins.
- the labelled biological molecule is an assay reagent taking part in an assay method and wherein the assay reagent is labelled with hyperpolarised xenon.
- the labelling of the biological molecule with hyperpolarised xenon may be performed before, during or after performance of the assay. ___.
- An assay method is a test involving a reaction of one or more biological molecules.
- the assays include for example competition assays (e.g. receptor- ligand antagonism, enzyme-substrate inhibitors, protein-protein interaction inhibitors), binding assays (e.g. receptor-ligand agonism, enzyme-substrate reactions, protein-protein interactions), immunoassays (e.g. for specific analytes), hybridisation assays (e.g. nuclease assays, mutation analysis, mRNA and DNA detection), test involving cells, organs and/or whole organisms. These tests may involve e.g.
- Assays include binding studies performed on eukaryotic and prokaryotic microorganisms; binding studies performed on tissue in vitro; and binding studies in which an assay reagent is administered in vivo and an excretion product (e.g. urine, faeces, or breath) analysed by NMR in vitro.
- an excretion product e.g. urine, faeces, or breath
- Assays performed in vitro may conveniently be in multiwell plates, with either an assay reagent in the wells of the plate being labelled with hyperpolarised xenon, or a reagent being so labelled in bulk prior to being dispensed into individual wells of the plate.
- the biological molecule is present in a liquid medium into which the xenon is introduced as a gas. This may be achieved e.g. by bubbling it through the fluid or by contact with the biological molecule as a solid.
- the xenon is introduced as a solution in a solvent, which is compatible with the biological molecule (e.g. in a lipophilic solvent such as a lipid or a fluorocarbon solvent).
- the liquid medium used according to one embodiment of the present invention may be deuterated water, deuterated buffers or solvents, e.g. lipophilic solvents which may contain lipid bicelles, lipid vesicles, liposomes, cryptophanes and/or cyclodextrins.
- deuterated buffers or solvents e.g. lipophilic solvents which may contain lipid bicelles, lipid vesicles, liposomes, cryptophanes and/or cyclodextrins.
- 129 Xe has a natural abundance of 26.4%.
- the xenon used for this invention may be either the naturally occurring material or one artificially enriched in 12 Xe.
- a preferred degree of enrichment 129 Xe is 40 % or more.
- a more preferred degree is 50 % or more and an even more preferred degree is 75 % or more.
- a particularly preferred degree of enrichment is 90 % or more.
- Bulk supplies of xenon enriched in 129 Xe and hyperpolarised to a high degree are now available commercially and have a half life long enough to permit transport over substantial distances. While the half life of hyperpolarised I29 Xe in the biological environments contemplated in this invention will be lower, it is expected to be amply sufficient to permit the desired spectra to be obtained.
- a preferred degree of hype ⁇ olarisation is 8 % or more.
- a more preferred hype ⁇ olarisation degree is 20 % or more and an even more preferred degree is 30 % or more. Ideally, the degree will approach 100
- the temperature at the time xenon is added is above the temperature at which the biological molecule is frozen, but below the temperature at which the biological molecule may be denatured.
- xenon may be added to the frozen biological molecule, followed by thawing.
- the right temperature to achieve the optimal function of the biological molecule should also be considered.
- the solution is kept as low as possible in order to slow down the exchange between the bound xenon and free xenon, without broadening the NMR signals too much.
- the solution is made viscous due to the use of one viscous solvent or the use of a suitable combination of solvents.
- the viscosity of the solvent is preferably within the range of 500 mPs to 5000 mPs, more preferably within the range of 700 mPs to 1500 mPs.
- the pressure of xenon is as high as possible, preferably higher than 5 xl0 5 N/m 2 (5 bar), more preferably higher than 5 x 10 6 N/m 2 (50 bar), even more preferably higher than 1 xl0 7 N/m 2 (100 bar) and particularly higher than 2xl0 7 N/m 2 (200 bar).
- the pressure must never be so high that the biological molecule will be adversely effected.
- Hype ⁇ olarised Xe is generated by optical pumping as described by B.D ⁇ ehuys et al., Appl.Phys.Lett. 69 (12), 1996.
- the Isotopic composition of the gas is 80% 129 Xe and 0.25% Xe (the rest non-magnetic isotopes of Xe).
- the degree of polarisation is estimated to be 10%.
- Lyzozyme (28 mg) is dissolved in a mixture of D 2 O and methanol-cU (40:60) (3 ml) in a heavy- walled 10 mm NMR-tube. This mixture is subjected to four freeze-pump-thaw cycles of degassing.
- the tube is then connected to the outlet of the polariser and frozen in liquid nitrogen.
- the hype ⁇ olarized gas is generated and collected on a cold finger at liquid nitrogen temperature in a holding field of 200 mT over a period of 15 minutes which is estimated to give a volume of 50 ml of Xe at NTP.
- a narrow Dewar vessel with liquid nitrogen is placed in a magnet with a field strength of 0.3 T.
- the collected xenon is thawed and then refrozen in the NMR-tube in the 0.3 T magnet.
- the sample tube is flame-sealed and the frozen sample is moved to the fringe field of the magnet of an NMR-spectrometer.
- the NMR-spectrometer sample space is kept at a temperature of 293 K.
- the sample is removed from the transport magnet and thawed by heating with the hand (protected from the cold) while standing as close to the NMR-magnet as possible.
- the sample starts to thaw it is shaken vigorously and inserted into the spectrometer.
- a 129 Xe spectrum is recorded and apart from the large peak due to the bulk xenon, a small peak, with a line width of 160 Hz, due to bound xenon can be observed at -158 ppm relative to bulk xenon.
Abstract
Description
Claims
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
GB9828853 | 1998-12-30 | ||
GBGB9828853.3A GB9828853D0 (en) | 1998-12-30 | 1998-12-30 | Nmr spectroscopy method |
PCT/GB1999/004395 WO2000040972A1 (en) | 1998-12-30 | 1999-12-23 | Nmr spectroscopy method |
Publications (1)
Publication Number | Publication Date |
---|---|
EP1141724A1 true EP1141724A1 (en) | 2001-10-10 |
Family
ID=10845178
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP99963638A Withdrawn EP1141724A1 (en) | 1998-12-30 | 1999-12-23 | Nmr spectroscopy method |
Country Status (5)
Country | Link |
---|---|
EP (1) | EP1141724A1 (en) |
JP (1) | JP2002534683A (en) |
AU (1) | AU1988000A (en) |
GB (1) | GB9828853D0 (en) |
WO (1) | WO2000040972A1 (en) |
Families Citing this family (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6648130B1 (en) | 1999-08-11 | 2003-11-18 | Medi-Physics, Inc. | Hyperpolarized gas transport and storage devices and associated transport and storage methods using permanent magnets |
US6630126B2 (en) | 2000-03-13 | 2003-10-07 | Medi-Physics, Inc. | Diagnostic procedures using direct injection of gaseous hyperpolarized 129Xe and associated systems and products |
EP1324690A1 (en) | 2000-07-13 | 2003-07-09 | Medi-Physics, Inc. | DIAGNOSTIC PROCEDURES USING ?129 XE SPECTROSCOPY CHARACTERISTIC CHEMICAL SHIFT TO DETECT PATHOLOGY i IN VIVO /i |
US7179450B2 (en) | 2001-09-20 | 2007-02-20 | Medi-Physics, Inc. | Methods for in vivo evaluation of pulmonary physiology and/or function using NMR signals of polarized Xe |
NO20025738D0 (en) * | 2002-11-29 | 2002-11-29 | Amersham Health As | Method |
Family Cites Families (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5357959A (en) * | 1993-04-16 | 1994-10-25 | Praxair Technology, Inc. | Altered dipole moment magnetic resonance imaging method |
US5545396A (en) * | 1994-04-08 | 1996-08-13 | The Research Foundation Of State University Of New York | Magnetic resonance imaging using hyperpolarized noble gases |
RU2186405C2 (en) * | 1996-03-29 | 2002-07-27 | Лоренс Беркли Нэшнл Лэборэтори | Amplification of nuclear magnetic resonance and magnetic resonance visualization in presence of hyperpolarized noble gases |
ATE256293T1 (en) * | 1997-01-08 | 2003-12-15 | Amersham Health As | METHOD FOR GENERATING IMAGE WITH MAGNETIC RESONANCE |
-
1998
- 1998-12-30 GB GBGB9828853.3A patent/GB9828853D0/en not_active Ceased
-
1999
- 1999-12-23 WO PCT/GB1999/004395 patent/WO2000040972A1/en not_active Application Discontinuation
- 1999-12-23 EP EP99963638A patent/EP1141724A1/en not_active Withdrawn
- 1999-12-23 JP JP2000592640A patent/JP2002534683A/en active Pending
- 1999-12-23 AU AU19880/00A patent/AU1988000A/en not_active Abandoned
Non-Patent Citations (1)
Title |
---|
See references of WO0040972A1 * |
Also Published As
Publication number | Publication date |
---|---|
GB9828853D0 (en) | 1999-02-17 |
AU1988000A (en) | 2000-07-24 |
WO2000040972A1 (en) | 2000-07-13 |
JP2002534683A (en) | 2002-10-15 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
Sanders et al. | Bicelles: a model membrane system for all seasons? | |
Spence et al. | Functionalized xenon as a biosensor | |
AU773402B2 (en) | Aptamers as reagents for high throughput screening | |
Bax et al. | High-resolution heteronuclear NMR of human ubiquitin in an aqueous liquid crystalline medium | |
Han et al. | NMR-based biosensing with optimized delivery of polarized 129Xe to solutions | |
Basus | [7] Proton nuclear magnetic resonance assignments | |
AU766923B2 (en) | NMR spectroscopic in vitro assay using hyperpolarization | |
Rubin et al. | Characterization of the effects of nonspecific xenon–protein interactions on 129Xe chemical shifts in aqueous solution: further development of xenon as a biomolecular probe | |
Milov et al. | Aggregation of spin labeled trichogin GA IV dimers: Distance distribution between spin labels in frozen solutions by PELDOR data | |
Zartler et al. | 1D NMR methods in ligand-receptor interactions | |
Opella et al. | Deoxyribonucleic acid dynamics from phosphorus-31 nuclear magnetic resonance | |
WO2000040972A1 (en) | Nmr spectroscopy method | |
Lowery et al. | Applications of laser-polarized 129Xe to biomolecular assays | |
Sinnaeve et al. | The solution structure and self‐association properties of the cyclic lipodepsipeptide pseudodesmin A support its pore‐forming potential | |
Merritt et al. | Long-Range Distance Measurements to the Phosphodiester Backbone of Solid Nucleic Acids Using 31P− 19F REDOR NMR | |
US7557573B2 (en) | NMR-based methods for detecting ligands, where the ligand or target are hyperpolarized and the NMR-spectrum is compared with a reference spectrum of the ligand or target | |
Prosser et al. | The measurement of immersion depth and topology of membrane proteins by solution state NMR | |
Eaton et al. | Measurement of interspin distances by EPR | |
Siegal et al. | Biomolecular NMR: recent advances in liquids, solids and screening | |
Stith et al. | Consequences of 129Xe–1H cross relaxation in aqueous solutions | |
Levy et al. | Recent developments in nuclear magnetic resonance spectroscopy | |
Ravindranathan et al. | Transferred cross-relaxation and cross-correlation in NMR: effects of intermediate exchange on the determination of the conformation of bound ligands | |
Middleton | NMR methods for characterising ligand-receptor and drug–membrane interactions in pharmaceutical research | |
Cotten et al. | High resolution and high fields in biological solid state NMR | |
US20040072211A1 (en) | Methods for identifying ligands using waterlogsy NMR |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PUAI | Public reference made under article 153(3) epc to a published international application that has entered the european phase |
Free format text: ORIGINAL CODE: 0009012 |
|
17P | Request for examination filed |
Effective date: 20010625 |
|
AK | Designated contracting states |
Kind code of ref document: A1 Designated state(s): AT BE CH CY DE DK ES FI FR GB GR IE IT LI LU MC NL PT SE |
|
AX | Request for extension of the european patent |
Free format text: AL;LT;LV;MK;RO;SI |
|
RAP1 | Party data changed (applicant data changed or rights of an application transferred) |
Owner name: AMERSHAM PLC |
|
17Q | First examination report despatched |
Effective date: 20030703 |
|
RAP1 | Party data changed (applicant data changed or rights of an application transferred) |
Owner name: GE HEALTHCARE LIMITED |
|
STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN |
|
18D | Application deemed to be withdrawn |
Effective date: 20050507 |