EP1006200A3 - Methods for producing selected interstrand cross-links in nucleic acids and applications thereof - Google Patents

Methods for producing selected interstrand cross-links in nucleic acids and applications thereof Download PDF

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Publication number
EP1006200A3
EP1006200A3 EP99204141A EP99204141A EP1006200A3 EP 1006200 A3 EP1006200 A3 EP 1006200A3 EP 99204141 A EP99204141 A EP 99204141A EP 99204141 A EP99204141 A EP 99204141A EP 1006200 A3 EP1006200 A3 EP 1006200A3
Authority
EP
European Patent Office
Prior art keywords
nucleic acid
links
methods
applications
interstrand cross
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
EP99204141A
Other languages
German (de)
French (fr)
Other versions
EP1006200A2 (en
EP1006200B1 (en
Inventor
Herman Volkers
Hendrik Jan Houthoff
Robert Jochem Heetebrij
Robertus Petrus Maria Van Gijlswijk
Hendrikus Johannes Tanke
Anton Klaas Raap
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Kreatech Biotechnology BV
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Kreatech Biotechnology BV
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Filing date
Publication date
Application filed by Kreatech Biotechnology BV filed Critical Kreatech Biotechnology BV
Priority to EP99204141A priority Critical patent/EP1006200B1/en
Publication of EP1006200A2 publication Critical patent/EP1006200A2/en
Publication of EP1006200A3 publication Critical patent/EP1006200A3/en
Application granted granted Critical
Publication of EP1006200B1 publication Critical patent/EP1006200B1/en
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6832—Enhancement of hybridisation reaction
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
    • C07H21/04—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6816—Hybridisation assays characterised by the detection means
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6841—In situ hybridisation
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/686—Polymerase chain reaction [PCR]

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Genetics & Genomics (AREA)
  • General Health & Medical Sciences (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Physics & Mathematics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Peptides Or Proteins (AREA)
  • Saccharide Compounds (AREA)

Abstract

The invention provides methods and means for generating interstrand cross-links in nucleic acid at certain specific locations in said nucleic acid. Said certain specific locations in said nucleic acid can be selected from other locations through hybridising nucleic acid present in said selected location with complementary nucleic. In one aspect the invention provides a method for providing at least one selected sequence in a nucleic acid with interstrand cross-links comprising hybridising at least one selected single strand sequence with a complementary single strand nucleic acid wherein said selected sequence or said complementary nucleic acid or both comprise a cross-linking agent. The means and methods of the invention may be used in and beneficial for a wide variety of applications, such as the generation of nucleic acid probes and the treatment of diseases such as cancer.
EP99204141A 1998-12-03 1999-12-03 Methods for producing selected interstrand cross-links in nucleic acids and applications thereof Expired - Lifetime EP1006200B1 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
EP99204141A EP1006200B1 (en) 1998-12-03 1999-12-03 Methods for producing selected interstrand cross-links in nucleic acids and applications thereof

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
EP98204094 1998-12-03
EP98204094A EP1006199A1 (en) 1998-12-03 1998-12-03 Applications with and methods for producing selected interstrand crosslinks in nucleic acid
EP99204141A EP1006200B1 (en) 1998-12-03 1999-12-03 Methods for producing selected interstrand cross-links in nucleic acids and applications thereof

Publications (3)

Publication Number Publication Date
EP1006200A2 EP1006200A2 (en) 2000-06-07
EP1006200A3 true EP1006200A3 (en) 2000-10-11
EP1006200B1 EP1006200B1 (en) 2011-08-10

Family

ID=8234427

Family Applications (2)

Application Number Title Priority Date Filing Date
EP98204094A Withdrawn EP1006199A1 (en) 1998-12-03 1998-12-03 Applications with and methods for producing selected interstrand crosslinks in nucleic acid
EP99204141A Expired - Lifetime EP1006200B1 (en) 1998-12-03 1999-12-03 Methods for producing selected interstrand cross-links in nucleic acids and applications thereof

Family Applications Before (1)

Application Number Title Priority Date Filing Date
EP98204094A Withdrawn EP1006199A1 (en) 1998-12-03 1998-12-03 Applications with and methods for producing selected interstrand crosslinks in nucleic acid

Country Status (11)

Country Link
US (4) US6406850B2 (en)
EP (2) EP1006199A1 (en)
JP (1) JP4838937B2 (en)
AT (1) ATE519859T1 (en)
AU (2) AU778429B2 (en)
CA (1) CA2353643C (en)
DK (1) DK1006200T3 (en)
ES (1) ES2366660T3 (en)
NZ (2) NZ512312A (en)
PT (1) PT1006200E (en)
WO (1) WO2000032814A2 (en)

Families Citing this family (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040266706A1 (en) * 2002-11-05 2004-12-30 Muthiah Manoharan Cross-linked oligomeric compounds and their use in gene modulation
EP1006199A1 (en) * 1998-12-03 2000-06-07 Kreatech Biotechnology B.V. Applications with and methods for producing selected interstrand crosslinks in nucleic acid
US6613582B1 (en) * 1999-05-25 2003-09-02 Board Of Regents, The University Of Texas System Methods for rapid and efficient protein cross-linking
US7473767B2 (en) 2001-07-03 2009-01-06 The Institute For Systems Biology Methods for detection and quantification of analytes in complex mixtures
KR20050073466A (en) * 2002-09-30 2005-07-13 칠드런스 머시 호스피탈 Subtelomeric dna probes and method of producing the same
US20050016555A1 (en) * 2003-07-24 2005-01-27 Lyles Mark B. Nucleic acid based filters
EP1819835B1 (en) 2004-12-08 2010-08-04 Gen-Probe Incorporated Detection of nucleic acids from multiple types of human papillomaviruses
CA2623405C (en) * 2005-09-20 2014-11-25 Immunivest Corporation Methods and composition to generate unique sequence dna probes labeling of dna probes and the use of these probes
WO2010065159A1 (en) * 2008-12-02 2010-06-10 Oregon Health & Science University Inhibition of dna polymerases to augment chemotherapeutic and antimicrobial agents
KR20110133617A (en) * 2009-03-26 2011-12-13 트러스티스 오브 보스턴 유니버시티 Method for imaging on thin solid-state interface between two fluids
BR112014001275B1 (en) * 2011-07-19 2019-02-05 Ask Chemicals L.P. "cold box" process and apparatus for forming a cured molten form
JP2017533733A (en) 2014-11-11 2017-11-16 アボツト・モレキユラー・インコーポレイテツド Hybridization probes and methods

Citations (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1990014353A1 (en) * 1989-05-18 1990-11-29 Microprobe Corporation Crosslinking oligonucleotides
US4997758A (en) * 1989-01-17 1991-03-05 Iowa State University Research Foundation, Inc. Cross-linking proteins with bimetallic tetracarboxylate compounds of transition metals
WO1996020289A1 (en) * 1994-12-27 1996-07-04 Naxcor Nucleic acid sequence detection employing amplification probes
US5589339A (en) * 1993-04-07 1996-12-31 Amersham International Plc Subtraction hybridization
US5652096A (en) * 1988-08-01 1997-07-29 Hri Research Inc. Identification of allele specific nucleic acid sequences by hybridization with crosslinkable oligonucleotide probes
WO1998015564A1 (en) * 1996-10-08 1998-04-16 Kreatech Biotechnology B.V. Methods for labeling nucleotides, labeled nucleotides and useful intermediates
FR2755146A1 (en) * 1996-10-28 1998-04-30 Centre Nat Rech Scient SELECTIVE AND IRREVERSIBLE BRIDGE PROCESS OF PLATINUM OLIGONUCLEOTIDES ON RNA AND ITS APPLICATIONS
US5831073A (en) * 1990-10-31 1998-11-03 The Research Foundation Of State University Of New York Ion triggered alkylation of biological targets by silyloxy aromatic agents

Family Cites Families (8)

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Publication number Priority date Publication date Assignee Title
US4711955A (en) * 1981-04-17 1987-12-08 Yale University Modified nucleotides and methods of preparing and using same
US4599303A (en) * 1983-12-12 1986-07-08 Hri Associates, Inc. Nucleic acid hybridization assay employing probes crosslinkable to target sequences
US5538869A (en) * 1990-12-13 1996-07-23 Board Of Regents, The University Of Texas System In-situ hybridization probes for identification and banding of specific human chromosomes and regions
AU2369895A (en) * 1994-04-29 1995-11-29 Perseptive Biosystems, Inc. Activated esters of 1-phenylpyrazolin-5-one for labelling amine-functionalized molecules
ES2205030T3 (en) 1995-05-09 2004-05-01 Kreatech Biotechnology B.V. PROCEDURES FOR THE PRODUCTION OF PLATINUM-BASED CONNECTION SEGMENTS BETWEEN BIO-ORGANIC MARKERS AND MOLECULES, FOR THE MARKING OF BIO-ORGANIC MOLECULES, THE DETECTION OF BIOLOGICAL SUBSTANCES TO BE STUDIED.
HU222691B1 (en) 1996-10-07 2003-09-29 Syngenta Participations Ag Chiral ferrocenyls
WO1998045304A1 (en) * 1997-04-10 1998-10-15 Kreatech Biotechnology B.V. Trans-platinum compound, and diagnostic kit
EP1006199A1 (en) * 1998-12-03 2000-06-07 Kreatech Biotechnology B.V. Applications with and methods for producing selected interstrand crosslinks in nucleic acid

Patent Citations (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5652096A (en) * 1988-08-01 1997-07-29 Hri Research Inc. Identification of allele specific nucleic acid sequences by hybridization with crosslinkable oligonucleotide probes
US4997758A (en) * 1989-01-17 1991-03-05 Iowa State University Research Foundation, Inc. Cross-linking proteins with bimetallic tetracarboxylate compounds of transition metals
WO1990014353A1 (en) * 1989-05-18 1990-11-29 Microprobe Corporation Crosslinking oligonucleotides
US5831073A (en) * 1990-10-31 1998-11-03 The Research Foundation Of State University Of New York Ion triggered alkylation of biological targets by silyloxy aromatic agents
US5589339A (en) * 1993-04-07 1996-12-31 Amersham International Plc Subtraction hybridization
WO1996020289A1 (en) * 1994-12-27 1996-07-04 Naxcor Nucleic acid sequence detection employing amplification probes
WO1998015564A1 (en) * 1996-10-08 1998-04-16 Kreatech Biotechnology B.V. Methods for labeling nucleotides, labeled nucleotides and useful intermediates
FR2755146A1 (en) * 1996-10-28 1998-04-30 Centre Nat Rech Scient SELECTIVE AND IRREVERSIBLE BRIDGE PROCESS OF PLATINUM OLIGONUCLEOTIDES ON RNA AND ITS APPLICATIONS

Non-Patent Citations (7)

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Title
CRAIG J M ET AL: "REMOVAL OF REPETITIVE SEQUENCES FROM FISH PROBES USING PCR -ASSISTEDAFFINITY CHROMATOGRAPHY", HUMAN GENETICS, vol. 100, no. 3/04, 1 September 1997 (1997-09-01), pages 472 - 476, XP002051198 *
DALBIES R ET AL: "DNA DOUBLE HELIX PROMOTES A LINKAGE ISOMERIZATION REACTION IN TRANS-DIAMMINEDICHLOROPLATINUM(II)-MODIFIED DNA", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF USA,US,NATIONAL ACADEMY OF SCIENCE. WASHINGTON, vol. 91, 1 August 1994 (1994-08-01), pages 8147 - 8151, XP002035543, ISSN: 0027-8424 *
FLORIJN RJ ET AL: "Effect of chromatic errors in microscopy on the visualization of multi-color fluorescence in situ hybridization", CYTOMETRY, vol. 23, 1996, pages 8 - 14, XP002145103 *
LICHTER P: "Multicolor FISHing: what's the catch?", TRENDS IN GENETICS,NL,ELSEVIER SCIENCE PUBLISHERS B.V. AMSTERDAM, vol. 13, no. 12, 1 December 1997 (1997-12-01), pages 475 - 479, XP004098764, ISSN: 0168-9525 *
SPEICHER MR ET AL: "Karyotyping human chromosomes by combinatorial multi-fluor FISH", NATURE GENETICS, vol. 12, January 1996 (1996-01-01), pages 368 - 75, XP002900459 *
TANKE HJ ET AL: "New strategy for multi-color fluorescence in situ: COBRA: COmbining Binary RAtio labelling", EUROPEAN JOURNAL OF HUMAN GENETICS, vol. 7, no. 1, January 1999 (1999-01-01), pages 2 - 11, XP000930083 *
TANKE HJ ET AL: "Use of platinium coproporphyrin and delayed luminescence imaging to extend the number of targets FISH karyotyping", CYTOMETRY, vol. 55, 1 December 1998 (1998-12-01), pages 455 - 59, XP000930087 *

Also Published As

Publication number Publication date
EP1006200A2 (en) 2000-06-07
AU778429B2 (en) 2004-12-02
ES2366660T3 (en) 2011-10-24
PT1006200E (en) 2011-10-06
JP4838937B2 (en) 2011-12-14
NZ529273A (en) 2006-04-28
EP1006200B1 (en) 2011-08-10
CA2353643A1 (en) 2000-06-08
US20090023910A1 (en) 2009-01-22
US20020012915A1 (en) 2002-01-31
DK1006200T3 (en) 2011-09-05
US20060204987A1 (en) 2006-09-14
ATE519859T1 (en) 2011-08-15
NZ512312A (en) 2004-04-30
US20040161743A1 (en) 2004-08-19
CA2353643C (en) 2013-10-15
AU2005200819A1 (en) 2005-03-17
JP2002531101A (en) 2002-09-24
EP1006199A1 (en) 2000-06-07
WO2000032814A3 (en) 2000-11-16
AU1696600A (en) 2000-06-19
WO2000032814A2 (en) 2000-06-08
US6406850B2 (en) 2002-06-18

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