EP0519011A1 - Protein expression via seed specific regulatory sequences - Google Patents

Protein expression via seed specific regulatory sequences

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Publication number
EP0519011A1
EP0519011A1 EP19910907063 EP91907063A EP0519011A1 EP 0519011 A1 EP0519011 A1 EP 0519011A1 EP 19910907063 EP19910907063 EP 19910907063 EP 91907063 A EP91907063 A EP 91907063A EP 0519011 A1 EP0519011 A1 EP 0519011A1
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Prior art keywords
promoter
signal
gene
poly
phaseolin
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EP19910907063
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German (de)
French (fr)
Inventor
Jerry Laverne Slightom
Paula Po Chee
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Pharmacia and Upjohn Co
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Upjohn Co
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8242Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/415Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from plants
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/575Hormones
    • C07K14/61Growth hormones [GH] (Somatotropin)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8216Methods for controlling, regulating or enhancing expression of transgenes in plant cells
    • C12N15/8222Developmentally regulated expression systems, tissue, organ specific, temporal or spatial regulation
    • C12N15/823Reproductive tissue-specific promoters
    • C12N15/8234Seed-specific, e.g. embryo, endosperm
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8242Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
    • C12N15/8243Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
    • C12N15/8251Amino acid content, e.g. synthetic storage proteins, altering amino acid biosynthesis
    • C12N15/8254Tryptophan or lysine
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8242Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
    • C12N15/8257Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits for the production of primary gene products, e.g. pharmaceutical products, interferon
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/01Fusion polypeptide containing a localisation/targetting motif
    • C07K2319/02Fusion polypeptide containing a localisation/targetting motif containing a signal sequence

Definitions

  • This invention relates to seed specific expression casettes for use in regulation and expression of proteins in plants.
  • seed storage proteins represent the predominate source of amino acids and nutrition for the germinating plant. It is well known that genes which code for storage proteins are strictly regulated. Seed storage proteins are produced in large quantities at a determined stage of development; expression is both tissue specific and developmentally controlled. These proteins are generally localized in specialized organelles called protein bodies or protein storage vacuoles and are essentially protease free. Because the seeds of many plants can readily synthesize large amounts of these storage proteins it is believed that the biological machinery within seed cells can be put to use synthesizing proteins of importance to pharmacological and industrial needs. Thus, characterization of the storage proteins as well as the ability to direct protein synthesis toward the protein bodies is of continuing experimental, commercial, and nutritional interest.
  • the storage proteins of the major grain crops have been particularly well studied.
  • the major seed storage proteins are the globulins, represented by two types: the nonglyco- sylated 11 S proteins and the glycosylated 7 S fraction.
  • the common bean Phaseolin.
  • the major storage protein in known as 0-conglycinin and its subunits (a , a' , and ⁇ ) represent up to 80% of total seed protein in that genus.
  • the protein zein constitutes about 80% of corn seed protein. While there are many zein-related genes responsible for zein production, one type, the ⁇ - zeins, are represented in very low copy number and yet account for
  • the seeds of many dicot and monocot plants are defl cient in certain essential amino acids which require the addition of these amino acids when these seeds are used as the predominate source of protein in the human or animal diet.
  • investigators have attempted to couple the high level expression of seed storage proteins with recombinant engineering techniques to produce plants with enhanced nutritional value.
  • the protein is deficient from a nutritional standpoint in that the globulins are relatively low in sulfur-rich amino acids, making legume seed a nutritionally incomplete foodstuff.
  • Recombinant techniques could be used to increase the amount of sulfur in the seed storage proteins or direct synthesis of heterologous sulfur-rich proteins.
  • non-plant genes in plants has also met with success, but on a more limited level. It has been suggested that the difficulty in attaining expression of non-plant proteins is due to a failure of the plant splicing machinery to recognize introns (also called Intervening sequences) present in the non-native transcribed pre-mRNA, K. Hartmuth and A. Barta, Nucleic Acids Res. 14: 7513-28 (1986), since removal of introns is necessary in order for the mRNA to be functional. See, M. Green, Annu. Rev. Genet. 20: 671-78 (1986). For instance, Barta, et al, Plant Molecular Biol.
  • introns also called Intervening sequences
  • hGH human growth hormone
  • European Patent Application 319 353 discloses a method for expressing a desired protein by modification of the hypervariable region of a determined storage protein by an insert encoding the desired peptide. In this way a modified storage protein is expressed which has contained within it amino acids which code for the foreign protein. The foreign protein is then cleaved by enzyme digestion, isolated and purified. However, the insert must be in reading phase with the non- modified part of the storage protein on either side of the insert, thus effectively limiting the size of the foreign protein which may be expressed to the length of the hypervariable region of the storage protein.
  • the present invention overcomes the problems outlined above by providing for seed specific expression of a desired protein comprising fusion of a gene with a seed specific gene regulatory sequence.
  • the present invention uses a gene amplification technique which is a modification of the polymerase chain reaction (PCR) method described in U.S. Pat. 4,683,195.
  • PCR polymerase chain reaction
  • European Patent Application 255 378 provides nucleotide sequences for seed specific transcriptional regulation. However, the reference does not teach the translation cassettes of the present invention.
  • European Patent Application 295 959 refers to DNA expression cassettes for transcription of the brazil nut sulfur-rich 2S seed storage protein. The reference neither teaches nor discloses the translational expression cassettes of the present invention.
  • European Patent Application 319 353 refers to a process for the production of useful biologically active polypeptides through the modification of plant genes encoding S2 albumins and is discussed above.
  • phaseolin mRNA can be produced in tobacco by the use of an mutant phaseolin gene lacking the native introns.
  • the gene coding for the ⁇ -zein 15Kd protein and regulatory regions are used in this invention.
  • the sequence and isolation of this sulfur-rich zein protein is disclosed in Pedersen, et al, "Sequence Analysis and Characterization of a Maize Gene Encoding a High-Sulfur Zein Protein of M r 15,000", J. Biol. Chem. 261:6279-6284 (1986).
  • the present invention uses specific linkage sequences not taught by the reference.
  • the present invention provides a seed specific expression cassette which has a promoter derived from either phaseolin, ⁇ '- subunit of ⁇ -conglycinin, or ⁇ -zein 15Kd; a translation initiation signal from either phaseolin, the ⁇ '-subunit of ⁇ -conglycinin, ⁇ -zein 15Kd, or an animal gene; a gene derived from brazil nut sulfur-rich seed storage protein or an animal gene; a translation termination region derived from either the animal gene, phaseolin, or ⁇ -zein 15Kd; and at least one polyadenylation region from phaseolin, the animal gene, or ⁇ -zein 15Kd; wherein the regulatory sequences are operably linked to one another in such a manner that the gene is expressed in seed or seed storage protein bodies.
  • the invention further provides enzyme restriction sites incorporated into the sequences which link the regulatory elements and genes.
  • the invention also provides that certain of the regulatory elements be derived from the same genetic source.
  • the present Invention provides an expression cassette in which the promoter is from phaseolin or ⁇ '-subunit of ⁇ - conglycinin, the animal gene and remaining elements are from bovine somato-tropin, and the restriction sites contained within the linkers are Ncol and Hindlll.
  • the present invention provides an expression cassette in which the promoter is from phaseolin or ⁇ '-subunit of ⁇ - conglycinin, one poly-A signal is from phaseolin, the remaining regions, including a second poly-A site, are from bovine somatotropin and the restriction sites are Ncol and Hindlll.
  • the present invention provides an expression cassette for the expression and regulation of bovine somatotropin in seed storage bodies.
  • the gene is from brazil nut 2S storage protein or subunits thereof, the promoter and translation initiation signal are derived from the same genetic source, and the translation termination signal and poly-A region are. from phaseolin or ⁇ -zein 15Kd.
  • the invention also provides for cells, plants, and seeds containing the expression cassettes disclosed here.
  • the present invention provides a plant In which a gene coding for a specified protein is Incorporated into the plant's genome in a manner such that regulation and expression of the specified protein Is under the control of a seed specific regulatory sequence.
  • the protein which is of Interest and for which expression is desired may be a plant protein homologous or heterologous to the host plant, or on the other hand, may be normally produced in a virus, microorganism, or other animal tissue.
  • Corn and soybean represent ideal hosts and seed storage protein regulatory regions isolated from Phaseolus vulgaris (phaseolin gene), Glycine max (promoter from the ⁇ '-subunit of ⁇ -conglycinin gene) and Zea mays (zein 15 Kd peptide gene) are preferred as sources of regulatory regions. Proteins which would have value when expressed in plant seeds include those designed for nutritional improvement (e.g., high sulfur soybean and common bean, high lysine corn, etc.), pharmacological importance (enzymes and hormones), and industrial value (enzymes).
  • Bst bovine somatatropin
  • cloning vectors which have an appropriate restriction site, a replication system, and a marker.
  • a cloning vector we have selected pUC18, Norrander et al, Gene (1983)26:101- 106, containing an ampicillin resistance marker.
  • Other suitable vectors are well known and may be easily adapted for use with the specific restriction sites of the present expression cassettes.
  • CPCR custom polymerase chain reaction
  • cassettes for transcriptional and translational fusion Two dicot specific seed promoter cassettes; and one monocot specific seed promoter cassette.
  • these cassettes may be utilized in a variety of hosts.
  • incorporation of these cassettes into a host plant genome may be accomplished by a variety of conventional methods. Such methods include transformation with Ti-DNA (A. tumefaciens, A. rhizopenes, etc.), protoplast fusion, injection, electroporation, and microprojectile bombardment.
  • These plant seed expression cassettes are used to express a high sulfur seed storage protein gene in the seeds of both dicot and monocot plants and to express a non-plant gene, bovine somatotropin (Bst), in the seeds of dicot plants.
  • Bst bovine somatotropin
  • Transgenic plants containing the heterologous gene of Interest are obtained through the Rl generation. Seeds from these plants, R2 seeds, are stained with protein antibody for TEM visualization of the heterologous protein localized within the protein storage bodies.
  • Bst means bovine somatotropin protein.
  • BST means the gene encoding Bst.
  • Bz means a sulfur-rich protein isolated from Brazil nut seed.
  • Bz-1", Bz-2", and “Bz-3” are subunits of Bz. These proteins are described in further detail below.
  • BZ, “BZ-1”, “BZ-2”, and “BZ- 3” are the genes encoding the respective proteins.
  • Seed specific expression cassette means a DNA construct containing gene regulatory elements and a gene encoding a protein of interest, in a suitable vector for incorporation into a plant genome, such that the expression of the gene is under the control of the gene regulatory regions, the regions being of the specificity, orientation, and reading frame such that expression of the gene is in the plant seed.
  • “Expression cassette” means a DNA construct lacking at least a gene encoding a protein of interest.
  • “Oligomer primer” means a nucleotide sequence needed for PCR amplification of a gene or gene regulatory element. The primers used in this invention have been synthesized to incorporate specific restriction enzyme sites into the primer.
  • Charts 1 through 22 illustrate the constructions of the present invention. The following conventions are used to illustrate plasmids and DNA fragments:
  • the single line figures represent both circular and linear double-stranded DNA.
  • phaseolin (common bean) is known as phaseolin.
  • the complete sequence, including 5' and 3' regulatory elements, and cDNA counterpart have been published by Slightom et al. (1983).
  • phaseolin regulatory regions we use the clone pPhasmin which has the intronless cDNA counterpart in place of the genomic coding and intron regions, as described by Cramer et al., Proc. Natl. Acad. USA, 82:334-338 (1985).
  • Oligomer primers for amplification of phaseolin promoter (pvP) are constructed to contain Hindlll (in the 5' primer) and Ncol (in the 3' primer) sites.
  • the Ncol site is designed to include a translation initiation site which conforms to the rules described by Kozak (1986) by containing the sequence AAXXATGG where X represents G, A, T or C. Sequences of the oligomers used for the amplification and engineering of the phaseolin promoter are shown in Chart 1(a). Using CPCR technology the restriction sites are fused to the 500 b.p. phaseolin promoter region resulting in the fragment designated pvP in Chart 1(b).
  • oligomer primers are synthesized to flank the phaseolin polyadenylation (poly-A) signal.
  • poly-A phaseolin polyadenylation
  • the 5' primer incorporates a Ncol site and the 3' primer a Hindlll site.
  • the nucleotide sequences of these two primers is shown in Chart 1(c).
  • Amplification results in a 1100 b.p. fragment designated pvS in Chart 1(d).
  • the pvP and pvS fragments were subjected to digestion by Ncol followed by ligation of the fragments (Chart 1(e)).
  • the ligated pvP + pvS fragment (1600 b.p.) is subjected to Hindlll digestion, purified on polyacrylamide gel, and cloned into Hindlll digested pUC18.
  • the clone containing the correct pvP + pvS sequences (confirmed by restriction enzyme mapping and nucleotide sequencing) is referred to as pUC18pvPpvS in Chart 1(f).
  • This expression cassette is used with coding regions which either contain their own translation initiation signal or do not need a signal for proper targeting of the protein product. in addition, any coding regions inserted into this cassette must include a translation termination signal.
  • oligonucleotide primers are designed for the amplification of promoter and terminator fragments from pPhasmin which contain the phaseolin signal peptide (SP) and translational termination (TT) signals, respectively.
  • SP phaseolin signal peptide
  • TT translational termination
  • phaseolin 3' regulatory regions are obtained using the primers shown in Chart 2(c). Again, these primers contain an inframe Nco I site in the 5' oligomer and a Hindlll site in the 3' oligomer. Amplification yields a 1200 b.p. fragment referred to as pvTTpvS in chart 2(d).
  • Both fragments, pvPpvSP and pvTTpvS, are subjected to digestion by Ncol and the exposed Ncol sites are ligated together to yield the fragment referred to as pvPpvSPpvTTpvS in chart 2(e).
  • This fragment is then digested with Hindlll to expose CPCR engineered 5' and 3' sites followed by cloning into Hindlll digested pUC18.
  • the phaseolin expression cassette referred to as pUC18pvPpvSPpvTTpvS in chart 2(f) is obtained and checked by restriction enzyme mapping and nucleotide sequencing to determine that it is correct.
  • This seed specific expression cassette is used with coding regions which need a seed specific signal peptide and an inframe translation termination region.
  • ⁇ -conglycinin represents the major seed storage protein. The level of expression is very high; each of the two to four subunits account for between 12 to 20% of the total protein in the seed.
  • the nucleotide sequence of the promoter region of Glycine max ⁇ '-subunit of ⁇ -conglycinin has been published by Doyle et al., J. Biol. Chem. 261:9228 (1986).
  • the promoter (gmP) is amplified from 250 ng total Glycine max DNA and, by using CPCR, a Hindlll site is added to the 5' end as well as an Ncol site at the translation initiator codon (ATG) .
  • oligomers are designed for amplification of the promoter (oligomer sequences are shown in Chart 3(a)).
  • the sequence of the amplified 600 b.p. gene, designated gmP in Chart 3(b) is verified by restriction enzyme mapping and nucleotide sequencing for accuracy.
  • the fragment gmP was subjected to digestion by Ncol and ligated to the Ncol digested fragment pvS (described In Example 1) to obtain the fragment referred to as gmPpvS in Chart 3(c).
  • the resulting fragment, gmPpvS is digested with Hindlll, ligated into Hindlll digested pUC18, and the clone pUC18gmPpvS is obtained.
  • This expression cassette is used to direct seed specific expression of coding regions which require transcriptional fusions, similar to that shown in Example 1. However, when incorporated into the Glycine genome the level of expression may be somewhat higher than the Phaseolus expression cassette of Example 1, due to the more native environment for the Glycine cassette.
  • the same 5' primer as described in Example 3 is used.
  • the 3' oligomer primer is designed to hybridize just beyond the signal peptide cleavage point described by Doyle et al, (1985), which occurs between amino acid residues 25 and 26. Therefore, we have selected to add the Ncol site after amino acid residue 29.
  • the primers used for this amplification are shown in Chart 4(a).
  • gmPgmSP in Chart 4(b) The result of this amplification, referred to as gmPgmSP in Chart 4(b), is a fragment of 690 b.p. Authenticity of this fragment is checked by nucleotide sequencing. It is then subjected to digestion by Ncol and ligated to the Ncol cut fragment pvTTpvS described in Example 2. The resulting fragment, referred to as gmPgmSPpvTTpvS in Chart 4(c), was subjected to digestion by Hindlll and cloned into Hindlll digested pUC18. The clone (designated pUC18gmPgmSPpvTTpvS in Chart 4(d)) is isolated and its structure checked by restriction enzyme mapping and nucleotide sequencing. This expression cassette is used for the expression of modified seed storage protein genes or foreign genes in the seeds of dicotyledonous plants.
  • the zein proteins constitute about 80% of the total seed protein of Zea mays (corn); however, there are many zein-related genes responsible for the production of these zein proteins. Recently, one particular member of the zein gene families was found to be represen- ted in low copy number, but responsible for the production of about 10% of the total zein proteins. These genes are referred as ⁇ -zeins (or 15 Kd) genes and the sequence of one member has been described by Pedersen et al. (1986). However, the nucleotide sequence of the ⁇ - zein gene reported by Pedersen only extends about 233 b.p. 5' of the translation initiation, thus the complete ⁇ -zein gene promoter may not be present.
  • Clone pZein15K (Chart 6(a)) provides the starting material for the CPCR amplification of its promoter and polyadenylation regions.
  • an indigenous Ncol site in the promoter region was removed by flushing with mung bean nuclease following the procedure of Maniatis, et al, (1982), which caused a loss of four base pairs (CATG). These four base pairs are located between the CCAAAT and TATAA elements and thus should not affect the function of the promoter.
  • This modified ⁇ -zein gene promoter region was amplified using CPCR to add a Sail site and a Ncol site to the 5' and 3' primers, respectively.
  • the sequences of the oligomers used to accomplish this are shown in Chart 6(b).
  • the amplified product was a 350 b.p. fragment which is referred to as zmP in Chart 6(c).
  • Additional CPCR oligomer primers were used to amplify the polyadenylation region of pZein 15K so as to add a (5') Ncol site and a (3') Sail site.
  • Oligomers sequences are shown in Chart 6(d).
  • the amplified product was a fragment of approximately 700 b.p. which Is referred to as zmS in Chart 6(e).
  • the two amplified fragments, zmP and zmS are subjected to digestion with Ncol followed by ligation and isolation of the fragment referred to as zmPzmS in Chart 6(f).
  • zmPzmS Is digested with Sail and cloned into Sail digested pUC18.
  • Clone pUC18zmPzmS (Chart 6(g)) is isolated and its structure verified using restriction enzyme mapping and nucleotide sequencing.
  • the expression cassette pUC18zmPzmS is used for seed specific expression of modified seed storage protein genes or other genes which do not require a zein signal peptide and/or a zein translation terminator.
  • CPCR amplification of the ⁇ -zein transla tion terminator and polyadenylation signal regions of pZein 15K is done using a linker engineered to contain a 5' inframe Ncol site and a 3 ' Sail site; sequences are shown in Chart 7(c).
  • the fragments zmPzmSP and zmTTzmS are subjected to digestion by Ncol and ligated together to obtain the fragment referred to zmPzmSPzmTTzmS in Chart 7(e).
  • This fragment is then subjected to digestion by Sail and cloned into Sail digested pUC18.
  • the resulting clone, pUC18zmPzmSPzmTTzmS (Chart 7(f)) is confirmed by restriction enzyme site mapping and nucleotide sequencing.
  • This seed specific expression cassette pUCzmPzmSpzmTTzmS is used to regulate the expression of modified seed storage protein genes or other genes which may require a monocot or ⁇ -zein signal peptide and inframe translation terminator signal.
  • BZ-1 was synthesized as a single 144 base oligomer, BZ-2 as a 210 base oligomer and BZ-3 as a
  • brazilnut gene fragments were complemented, purified, and had Ncol sites added on both 5' and 3' ends using CPCR amplification. As is true of the BZ gene in Example 7, each inframe Ncol site yields the codon TGG which encodes tryptophan, making resulting plant seed a more nutritionally complete foodstuff.
  • the primers used for amplification of BZ-1 are shown in Chart 11(a), those for BZ-2 in Chart 11(b), and those for BZ-3 in Chart 11(c). Because of the addition of the extra nucleotides the fragments isolated after amplification are about 15 b.p. larger than the original synthesized fragments BZ-1, BZ-2, and BZ-3. These fragments are subjected to digestion with Ncol and cloned into the Ncol cut expression cassettes described in Examples 2, 4 and 6.
  • the following clones are isolated, pUC18pvPpvSPSZ-1, -2 , and -3pvTTpvS (Charts 12(a) -(c)), pUC18gmPgmSPBZ-2, -2, and -3pvTTpvS (Charts 13(a)-(c)), pUC18zmPzmSPBZ-1, -2 , and -3pvTTpvS (Charts 14(a) -(c)).
  • the structure of these clones is checked by restriction enzyme mapping and nucleotide sequencing.
  • the expression cassettes contained within these plasmids may removed and transferred into vectors used for Agrobacterium systems or may used with microprojectile bombardment of plant tissues.
  • Bst bovine somatotropin gene
  • Bgh bovine growth hormone
  • This clone is referred to as pSVGH-1 (delta IVS) and Is used to provide the Bst coding region for CPCR engineering.
  • pSVGH-1 delta IVS
  • Is used to provide the Bst coding region for CPCR engineering.
  • CPCR allows the coding region to be engineered in such a manner to be accepted by any of the expression cassettes described in Examples 1 to 6. These arrangements can include the use of different gene regulatory regions which can be provided by the expression cassette or even from the Bst gene.
  • Bst protein is encoded in a gene which contains a 26 amino acid signal peptide followed by a coding region containing 191 amino acids.
  • the clone pSVGH-1 also contains the indigenous Bst gene polyadenylation signal.
  • For the Bst protein to be active its signal peptide must be removed, thus by using CPCR in combination with the cassettes described above we have the option of expressing It with or without its signal peptide, with or without a seed protein signal peptide, and with or without its polyadenylation signal.
  • This example illustrates several of these expression cassettes coding for Bst.
  • the first series of constructions uses the seed storage protein gene expression promoters, described in Examples 1, 3 and 5, to construct transcriptional fusions genes which use the Bst signal peptide and polyadenylation signal.
  • pSVGH delta-1
  • CPCR is used to add an Ncol site to its 5' end (retaining the translation initiation signal) and adding a Hindlll site 3' of the Bst polyadenylation signal.
  • the oligomer primers of this construction are shown in Chart 15(a) and are used to amplify a 840 b.p. fragment referred to as bvSPBSTbvTTbvS. This fragment is subjected to digestion by Ncol and cloned into the seed promoter fragments described in Examples 1 and 3, see Charts 15(b) and 16(a).
  • ligated seed promoter-Bst fragments are then digested with Hindlll followed by ligation to Hindlll digested pUC18 and the following clones isolated, pUC18pvPbvSPBSTbvTTbvS and pUC18gmPbvSPBSTbvTTbvS, as shown in Charts 15(c) and 16(b), respectively.
  • the correct sequence is verified using restriction enzyme site mapping and nucleotide sequencing.
  • the inserts from these clones can be removed and transferred into either an Agrobacterium vector system or into a vector to be used for mlcroprojectile bombardment of plant tissues.
  • the Bst gene can be cloned directly into the Ncol site located within the seed expression cassettes shown in Examples 1 and 3.
  • the 3' oligomer primer needs to be changed to include Ncol. This is done with the use of the oligomer primer shown in Chart 17(a) and CPCR engineering.
  • the fragment containing the Bst gene obtained from this amplification is also about 640 b.p. in length, and is referred to as bvSPBSTbvTTbvS in Chart 17(b). This fragment is digested with Ncol and cloned into the Ncol site of the plant expression cassette shown in Example 1.
  • Bst does not include its 19 amino acid signal peptide, which is cleaved soon after synthesis (Woychik et al., 1982). However, in a plant system it is doubtful that this signal peptide would be removed, thus its removal would have to be done as part of a purification procedure.
  • the above constructions do not include the normal signal peptides for the plant seed storage protein genes to ensure correct targeting of the Bst peptide.
  • the following constructions illustrate a translational fusion, made with the Bst protein gene, which does not include the
  • Bst signal peptide but d'oes contain the signal peptides from the plant seed storage protein genes. This is accomplished by using CPCR to amplify the part of the Bst gene which does not Include the Bst signal peptide and cloning it into the expression cassettes described in Examples 2 and 4.
  • the polypeptide resulting from expression from these fused gene is expected to initially include the seed storage signal peptides, which should be removed as a result of normal proteolytic cleavage to yield a Bst polypeptide which would be identical to the naturally occurring peptide except for the presence of two to four additional amino acids at its N-terminus. These additional amino acids are needed to ensure that the signal peptide cleavage site is recognized (see Examples 2, 4 and 6).
  • the appropriate Bst gene fragment can be obtained using CPCR amplification using the two primers shown In Chart 21(a) which amplifies a 600 b.p. fragment referred to as BSTbvTT in Charts 21(b) and 22(a). This fragment is subjected to digestion by Ncol and then ligated into the seed storage protein gene cassettes described in Examples 2 and 4 to obtain clones, pUC18pvPpvSPBSTbvTTpvS (Chart 21(c)) and pUC18gmPgmSPBSTbvTTpvS (Chart 22(b)).
  • the engineered expression cassettes contained within these clones can be removed by digestion with Hindlll followed by transfer to vectors designed to be used with Agrobacterium or microprojectile gene transfer systems.
  • a plant was produced which contained an expression cassette coding for the bovine somatotropin gene, BST.
  • BST bovine somatotropin gene
  • Plasmid pSVbGH-1 contains a single restriction site for BamHI which lies between the SV40 promoter and the Bst gene.
  • pPhasBst is made by digestion of pSVbGH-1 with BamHI followed by subsequent incorporation of the purified promoter region at the restriction site.
  • the region of the pPhasBst plasmid containing the Bst genes and the phaseolin regulatory region is removed by digestion with Kpnl and inserted at the Kpnl site of Aprobacterium binary vector pGA482G to make plasmid pGA482G/PhasBst.
  • pGA482G/PhasBst is used to transform Agrobacterium strain C58Z707.
  • the resultant Agrobacterium is used to infect cultured tobacco leaf pieces, from which whole plants were derived.
  • Transgenic tobacco plants containing the PhasBst gene are obtained through the R1 generation. Seeds from theses plants, R2 seeds, are stained with Bst antibody for TEM visualization. Results show localization of Bst protein within the protein storage bodies.

Abstract

Cassettes d'expressions spécifiques de semences permettant la régulation et l'expression, dans certaines plantes, de protéines importantes pour les besoins pharmacologiques et industriels. On peut construire rapidement ces cassettes en joignant des éléments régulateurs par l'intermédiaire de sites enzymatiques de restriction synthétisés pour produire les oligomères d'amplification utilisés afin de cloner les sites régulateurs. Selon un procédé de l'invention, la région d'activation du gène de phaséoline est fixée à un gène intron codant pour la somatotropine bovine (Bst), et elle est liée à un signal poly-A provenant de la phaséoline, de la Bst, ou des deux, afin de permettre un transfert dans un génome de plantes.Cassettes of specific seed expressions allowing the regulation and expression, in certain plants, of proteins important for pharmacological and industrial needs. These cassettes can be rapidly constructed by joining regulatory elements through enzymatic restriction sites synthesized to produce the amplification oligomers used to clone the regulatory sites. According to a method of the invention, the activation region of the phaseoline gene is attached to an intron gene coding for bovine somatotropin (Bst), and it is linked to a poly-A signal originating from phaseoline, from Bst , or both, to allow transfer into a plant genome.

Description

PROTEIN EXPRESSION VIA SEED
SPECIFIC REGULATORY SEQUENCES
FIELD OF THE INVENTION
This invention relates to seed specific expression casettes for use in regulation and expression of proteins in plants.
BACKGROUND OF THE INVENTION
In many plant species, seed storage proteins represent the predominate source of amino acids and nutrition for the germinating plant. It is well known that genes which code for storage proteins are strictly regulated. Seed storage proteins are produced in large quantities at a determined stage of development; expression is both tissue specific and developmentally controlled. These proteins are generally localized in specialized organelles called protein bodies or protein storage vacuoles and are essentially protease free. Because the seeds of many plants can readily synthesize large amounts of these storage proteins it is believed that the biological machinery within seed cells can be put to use synthesizing proteins of importance to pharmacological and industrial needs. Thus, characterization of the storage proteins as well as the ability to direct protein synthesis toward the protein bodies is of continuing experimental, commercial, and nutritional interest.
The storage proteins of the major grain crops have been particularly well studied. In the legumes the major seed storage proteins are the globulins, represented by two types: the nonglyco- sylated 11 S proteins and the glycosylated 7 S fraction. In the common bean (Phaseolus vulgaris) about 50% of the total seed protein is represented by a group of three polypeptides (the α, β , and γ subunits) collectively known as phaseolin. In soybean (Glycine max) the major storage protein in known as 0-conglycinin and its subunits (a , a' , and β) represent up to 80% of total seed protein in that genus.
In corn (Zea mays), a representative monocot, the protein zein constitutes about 80% of corn seed protein. While there are many zein-related genes responsible for zein production, one type, the β- zeins, are represented in very low copy number and yet account for
10% of total seed protein.
However, the seeds of many dicot and monocot plants are defl cient in certain essential amino acids which require the addition of these amino acids when these seeds are used as the predominate source of protein in the human or animal diet. For a number of years investigators have attempted to couple the high level expression of seed storage proteins with recombinant engineering techniques to produce plants with enhanced nutritional value. For instance, while legume seed contain high levels of storage protein, the protein is deficient from a nutritional standpoint in that the globulins are relatively low in sulfur-rich amino acids, making legume seed a nutritionally incomplete foodstuff. Recombinant techniques could be used to increase the amount of sulfur in the seed storage proteins or direct synthesis of heterologous sulfur-rich proteins. The development of seed specific promoter cassettes for monocotyledons plant species is also important since the seeds from these plants are widely used as a food source for animals and humans. Thus, in a similar manner, zein, which is lacking in the essential amino acid lysine, can be made nutritionally complete.
On an industrial scale, such techniques can be used to direct heterologous proteins or enzymes into the storage vacuoles. As protease-free zones within the seed, such expression would serve as an abundant and easily purified source of protein. Thus, plant seed could provide an alternative means for producing hormones and enzymes needed for commercial and industrial use.
By using genetic engineering techniques it is already possible to transfer genes into many plant species; direct expression of homologous (native to the host) and heterologous (foreign) plant genes is well established. Numerous reports indicate that seed storage protein genes have been transferred to other plants with expression in both a tissue specific and developmentally regulated manner, Beachy, et al., EMBO 4:3047-3050, (1985), as well as into protein bodies. Greenwood and Chrispeels, Plant Physiol. 79:65-71 (1985).
The expression of non-plant genes in plants has also met with success, but on a more limited level. It has been suggested that the difficulty in attaining expression of non-plant proteins is due to a failure of the plant splicing machinery to recognize introns (also called Intervening sequences) present in the non-native transcribed pre-mRNA, K. Hartmuth and A. Barta, Nucleic Acids Res. 14: 7513-28 (1986), since removal of introns is necessary in order for the mRNA to be functional. See, M. Green, Annu. Rev. Genet. 20: 671-78 (1986). For instance, Barta, et al, Plant Molecular Biol. 6:347-357 (1986), report construction of a chimeric gene in which the complete human growth hormone (hGH) gene is flanked by DNA fragments coding for the promoter and polyadenylation sites of the nopaline synthase gene. When the chimeric gene is introduced into sunflower and tobacco callus tissue the gene is transcribed to the pre-mRNA stage. However, the transcript is non-functional in the plant tissue as the pre-mRNA is not further processed by the plant to mRNA. Thus the foreign protein, hGH, is not synthesized.
An alternative to direct expression of foreign proteins is to make a gene construct wherein the gene encoding for the desired protein is inserted within a nonfunctional region of a plant protein. European Patent Application 319 353 discloses a method for expressing a desired protein by modification of the hypervariable region of a determined storage protein by an insert encoding the desired peptide. In this way a modified storage protein is expressed which has contained within it amino acids which code for the foreign protein. The foreign protein is then cleaved by enzyme digestion, isolated and purified. However, the insert must be in reading phase with the non- modified part of the storage protein on either side of the insert, thus effectively limiting the size of the foreign protein which may be expressed to the length of the hypervariable region of the storage protein.
The present invention overcomes the problems outlined above by providing for seed specific expression of a desired protein comprising fusion of a gene with a seed specific gene regulatory sequence.
INFORMATION DISCLOSURE STATEMENT
The present invention uses a gene amplification technique which is a modification of the polymerase chain reaction (PCR) method described in U.S. Pat. 4,683,195.
European Patent Application 255 378 provides nucleotide sequences for seed specific transcriptional regulation. However, the reference does not teach the translation cassettes of the present invention. European Patent Application 295 959 refers to DNA expression cassettes for transcription of the brazil nut sulfur-rich 2S seed storage protein. The reference neither teaches nor discloses the translational expression cassettes of the present invention.
European Patent Application 319 353 refers to a process for the production of useful biologically active polypeptides through the modification of plant genes encoding S2 albumins and is discussed above.
An East German Patent Application, DD 263-081-A, reports a process for the production of useful proteins via a vector containing a regulatory sequence isolated from a plant gene.
Barta, A., et al, "The Expression of Nopaline Synthase-Human Growth Hormone Chimaeric Gene in Transformed Tobacco and Sunflower Callus Tissue", Plant Molecular Biol, 6:347-357 (1986), report construction of a chimeric gene containing the complete human growth hormone (hGH) gene flanked by the promoter and polyadenylation site of the nopaline synthase gene and is discussed above.
Beachy, et al, "Accumulation and Assembly of Soybean β-Conglycinin in Seeds of Transformed Petunia Plants", EMBO, 4:3047-3053 (1985), report the accumulation of the α'-subunit of the soybean seed storage protein β-conglycinin in the seeds of transformed petunia cells. The reference does not teach or disclose the cassettes of the present invention.
P.P. Chee, et al, "Expression of a Bean Storage Protein 'Phaseolin Minigene' in Foreign Plant Tissues", Gene, 41:47-57
(1986), report that stable and functional phaseolin mRNA can be produced in tobacco by the use of an mutant phaseolin gene lacking the native introns.
The gene coding for the β-zein 15Kd protein and regulatory regions are used in this invention. The sequence and isolation of this sulfur-rich zein protein is disclosed in Pedersen, et al, "Sequence Analysis and Characterization of a Maize Gene Encoding a High-Sulfur Zein Protein of Mr 15,000", J. Biol. Chem. 261:6279-6284 (1986).
Sengupta-Gopalan, et al, "Developmentally Regulated Expression of the Bean β-Phaseolin Gene in Tobacco Seed", Proc. Natl. Acad. USA, 82:3320-3324 (1985), report the transformation of tobacco with a 3.8- kB phaseolin DNA fragment containing the coding region and flanking DNA necessary for correctly regulated expression of the gene. However, the present invention uses specific linkage sequences not taught by the reference.
The complete nucleotide sequence of the French bean seed storage protein phaseolin is disclosed in Slightom, et al, "Complete Nucleotide Sequence of French Bean Storage Protein Gene: Phaseolin", Proc. Natl. Acad. USA, 80:1897-1901 (1983). Some of the methods reported therein are used in the present invention.
SUMMARY OF THE INVENTION
The present invention provides a seed specific expression cassette which has a promoter derived from either phaseolin, α'- subunit of β-conglycinin, or β-zein 15Kd; a translation initiation signal from either phaseolin, the α'-subunit of β-conglycinin, β-zein 15Kd, or an animal gene; a gene derived from brazil nut sulfur-rich seed storage protein or an animal gene; a translation termination region derived from either the animal gene, phaseolin, or β-zein 15Kd; and at least one polyadenylation region from phaseolin, the animal gene, or β-zein 15Kd; wherein the regulatory sequences are operably linked to one another in such a manner that the gene is expressed in seed or seed storage protein bodies. The invention further provides enzyme restriction sites incorporated into the sequences which link the regulatory elements and genes. The invention also provides that certain of the regulatory elements be derived from the same genetic source.
More particularly, the present Invention provides an expression cassette in which the promoter is from phaseolin or α'-subunit of β- conglycinin, the animal gene and remaining elements are from bovine somato-tropin, and the restriction sites contained within the linkers are Ncol and Hindlll.
More particularly, the present invention provides an expression cassette in which the promoter is from phaseolin or α'-subunit of β- conglycinin, one poly-A signal is from phaseolin, the remaining regions, including a second poly-A site, are from bovine somatotropin and the restriction sites are Ncol and Hindlll.
Most particularly, the present invention provides an expression cassette for the expression and regulation of bovine somatotropin in seed storage bodies.
In another embodiment of the invention the gene is from brazil nut 2S storage protein or subunits thereof, the promoter and translation initiation signal are derived from the same genetic source, and the translation termination signal and poly-A region are. from phaseolin or β-zein 15Kd.
The invention also provides for cells, plants, and seeds containing the expression cassettes disclosed here.
DETAILED DESCRIPTION OF THE INVENTION
The present invention provides a plant In which a gene coding for a specified protein is Incorporated into the plant's genome in a manner such that regulation and expression of the specified protein Is under the control of a seed specific regulatory sequence. The protein which is of Interest and for which expression is desired may be a plant protein homologous or heterologous to the host plant, or on the other hand, may be normally produced in a virus, microorganism, or other animal tissue.
The following examples illustrate specific embodiments of the invention. We have used a modified form of the polymerase chain reaction technique to combine various seed storage protein gene regulatory elements (promoters, translation initiation sites, translation termination sites, and transcription polyadenylation (poly-A) signals) with protein coding regions to form expression cassettes which direct and control the production of various modified proteins in the seeds of plants. These expression cassettes may then be used to transform plant cells from which whole plants are derived. Gene regulatory elements are used which may be inserted into hosts of either monocot or dicot plant species. Of particular interest as host plants are those which are cultivated for high levels of seed production. Such hosts include wheat, corn, rice, etc. (monocots) and soybean, common bean, pea, etc. (dicots). Corn and soybean represent ideal hosts and seed storage protein regulatory regions isolated from Phaseolus vulgaris (phaseolin gene), Glycine max (promoter from the α'-subunit of β-conglycinin gene) and Zea mays (zein 15 Kd peptide gene) are preferred as sources of regulatory regions. Proteins which would have value when expressed in plant seeds include those designed for nutritional improvement (e.g., high sulfur soybean and common bean, high lysine corn, etc.), pharmacological importance (enzymes and hormones), and industrial value (enzymes). We have demonstrated seed specific expression cassettes containing genes designed to improve the nutritional value of seed protein meal by encoding a high-sulfur gene. We have also demonstrated the production and segregation of bovine somatatropin (Bst) protein into protein storage vacuoles.
Numerous cloning vectors are available which have an appropriate restriction site, a replication system, and a marker. As a cloning vector we have selected pUC18, Norrander et al, Gene (1983)26:101- 106, containing an ampicillin resistance marker. Other suitable vectors are well known and may be easily adapted for use with the specific restriction sites of the present expression cassettes.
For the genetic engineering experiments described In the examples one can use many different methods of obtaining the desired sequence junctions between regulatory regions and coding DNA, such as, site specific mutagenesis, linkers, and/or polymerase chain reactions (PCR). We have selected to use a modification of PCR, which we call custom polymerase chain reaction (CPCR) as the technique for the addition of regulatory regions with coding DNA. CPCR allows one to incorporate specific enzyme restriction sites directly into the linkage oligomers as they are synthesized. The oligomers are then used in PCR amplification of a desired gene or regulatory element. The advantage to this modification is a more rapid construction of expression cassettes from the amplified sequences.
We include in the following examples expression cassettes for transcriptional and translational fusion; two dicot specific seed promoter cassettes; and one monocot specific seed promoter cassette. Those skilled in the art will recognize that these cassettes may be utilized in a variety of hosts. In addition, the incorporation of these cassettes into a host plant genome may be accomplished by a variety of conventional methods. Such methods include transformation with Ti-DNA (A. tumefaciens, A. rhizopenes, etc.), protoplast fusion, injection, electroporation, and microprojectile bombardment. These plant seed expression cassettes are used to express a high sulfur seed storage protein gene in the seeds of both dicot and monocot plants and to express a non-plant gene, bovine somatotropin (Bst), in the seeds of dicot plants.
Transgenic plants containing the heterologous gene of Interest are obtained through the Rl generation. Seeds from these plants, R2 seeds, are stained with protein antibody for TEM visualization of the heterologous protein localized within the protein storage bodies.
The following abbreviations are used throughout this disclosure to denote gene regulatory elements:
P = Promoter
SP = Translation Initiation Signal or Signal Peptide
TT = Translation Termination Signal
S = Polyadenylation (Poly-A) Signal
The following abbreviations are used throughout this disclosure to indicate source of the gene regulatory elements:
bv = genus Bovine
bz = Bertholletia excelsia (Brazil nut)
gm = Glycine max
pv = Phaseolus vulgaris
zm = Zea mays
The following abbreviations are used throughout this disclosure to indicate proteins:
"Bst" means bovine somatotropin protein. "BST" means the gene encoding Bst.
"Bz" means a sulfur-rich protein isolated from Brazil nut seed. "Bz-1", Bz-2", and "Bz-3" are subunits of Bz. These proteins are described in further detail below. "BZ", "BZ-1", "BZ-2", and "BZ- 3" are the genes encoding the respective proteins.
The following terms are used throughout this disclosure and are defined as follows:
"Seed specific expression cassette" means a DNA construct containing gene regulatory elements and a gene encoding a protein of interest, in a suitable vector for incorporation into a plant genome, such that the expression of the gene is under the control of the gene regulatory regions, the regions being of the specificity, orientation, and reading frame such that expression of the gene is in the plant seed.
"Expression cassette" means a DNA construct lacking at least a gene encoding a protein of interest. "Oligomer primer" means a nucleotide sequence needed for PCR amplification of a gene or gene regulatory element. The primers used in this invention have been synthesized to incorporate specific restriction enzyme sites into the primer.
Charts 1 through 22 illustrate the constructions of the present invention. The following conventions are used to illustrate plasmids and DNA fragments:
(1) The single line figures represent both circular and linear double-stranded DNA.
(2) Asterisks (*) indicate that the molecule represented is circular. Lack of an asterisk indicates the molecule is linear.
(3) Endonuclease restriction sites are indicated above the line.
(4) Genes are indicated below the line.
(5) Distance between genes and restriction sites are not to scale. The charts show their respective positions only.
The methods used here employ many standard recombinant DNA procedures as well as those for creating transgenic plants and are well known by those skilled in the art. Standard methods and laboratory techniques for recombinant experimentation can be found in T. Maniatis et al., "Molecular Cloning; A Laboratory Manual", Cold Spring Harbor Laboratory (1982) (recombinant DNA experimental protocols and methods); Miller, "Experiments in Molecular Genetics", Cold Spring Harbor Laboratory (1972) (culture techniques); Southern, J. Mol. Biol. 98: 503 (1975) (clone verification); Sanger, et al, Proc. Natl. Acad. Sci. USA 74:5463 (1977) (DNA sequencing). S.B. Gelvin and R.A. Schilperoot, "Plant Molecular Biology" (1988), supplies techniques for use in transforming and cloning plants.
DESCRIPTION OF THE PREFERRED EMBODIMENTS EXAMPLE 1
CONSTRUCTION OF AN EXPRESSION CASSETTE CONTAINING THE
PHASEOLIN PROMOTER (pvP) AND POLYADENYLATION SIGNAL (pvS)
FOR TRANSCRIPTION FUSION TO CODING DNA
The major seed storage protein gene of Phaseolus vulgaris
(common bean) is known as phaseolin. The complete sequence, including 5' and 3' regulatory elements, and cDNA counterpart have been published by Slightom et al. (1983). As a source of phaseolin regulatory regions we use the clone pPhasmin which has the intronless cDNA counterpart in place of the genomic coding and intron regions, as described by Cramer et al., Proc. Natl. Acad. USA, 82:334-338 (1985). Oligomer primers for amplification of phaseolin promoter (pvP) are constructed to contain Hindlll (in the 5' primer) and Ncol (in the 3' primer) sites. The Ncol site is designed to include a translation initiation site which conforms to the rules described by Kozak (1986) by containing the sequence AAXXATGG where X represents G, A, T or C. Sequences of the oligomers used for the amplification and engineering of the phaseolin promoter are shown in Chart 1(a). Using CPCR technology the restriction sites are fused to the 500 b.p. phaseolin promoter region resulting in the fragment designated pvP in Chart 1(b).
In a similar manner oligomer primers are synthesized to flank the phaseolin polyadenylation (poly-A) signal. In this case, however, the 5' primer incorporates a Ncol site and the 3' primer a Hindlll site. The nucleotide sequences of these two primers is shown in Chart 1(c). Amplification results in a 1100 b.p. fragment designated pvS in Chart 1(d). The pvP and pvS fragments were subjected to digestion by Ncol followed by ligation of the fragments (Chart 1(e)). The ligated pvP + pvS fragment (1600 b.p.) is subjected to Hindlll digestion, purified on polyacrylamide gel, and cloned into Hindlll digested pUC18. The clone containing the correct pvP + pvS sequences (confirmed by restriction enzyme mapping and nucleotide sequencing) is referred to as pUC18pvPpvS in Chart 1(f). This expression cassette is used with coding regions which either contain their own translation initiation signal or do not need a signal for proper targeting of the protein product. in addition, any coding regions inserted into this cassette must include a translation termination signal.
EXAMPLE 2
CONSTRUCTION OF A PHASEOLIN EXPRESSION CASSETTE CONTAINING PHASEOLIN PROMOT0R (pvP), SIGNAL PEPTIDE (pvSP), TRANSLATION TERMINATOR (pvTT), AND POLY-A SIGNAL (pvS)
FOR TRANSLATIONAL FUSIONS
In this example oligonucleotide primers are designed for the amplification of promoter and terminator fragments from pPhasmin which contain the phaseolin signal peptide (SP) and translational termination (TT) signals, respectively. N-terminal analyses of phaseolin protein by Parran et al., Phytochemistry 26: 335 (1987), show that cleavage is ragged and occurs after amino acid residue 23 and before amino acid 27. Thus, to ensure that the cassette contains the amino acids necessary for signal peptide cleavage the cassette is designed to include through residue 31. For CPCR amplification of the pvPpvSP fragment oligomers are designed which contain an inframe 5' Hindlll site and an inframe 3' Ncol site; these sequences are shown in Chart 2(a). Amplification yields the 580 b.p. fragment designated pvPpvSP in Chart 2(b).
To ensure complete reading of the translation termination sequence, the 4 amino acids 5' of the translation termination codon are retained. These phaseolin 3' regulatory regions are obtained using the primers shown in Chart 2(c). Again, these primers contain an inframe Nco I site in the 5' oligomer and a Hindlll site in the 3' oligomer. Amplification yields a 1200 b.p. fragment referred to as pvTTpvS in chart 2(d).
Both fragments, pvPpvSP and pvTTpvS, are subjected to digestion by Ncol and the exposed Ncol sites are ligated together to yield the fragment referred to as pvPpvSPpvTTpvS in chart 2(e). This fragment is then digested with Hindlll to expose CPCR engineered 5' and 3' sites followed by cloning into Hindlll digested pUC18. The phaseolin expression cassette referred to as pUC18pvPpvSPpvTTpvS in chart 2(f) is obtained and checked by restriction enzyme mapping and nucleotide sequencing to determine that it is correct.
This seed specific expression cassette is used with coding regions which need a seed specific signal peptide and an inframe translation termination region.
EXAMPLE 3
CONSTRUCTION OF AN EXPRESSION CASSETTE CONTAINING THE PROMOTER REGION OF THE GLYCINE MAX SEED STORAGE PROTEIN
α'-SUBUNIT OF β-CONGLYCININ (gmP) AND PHASEOLIN POLY-A SIGNAL (pvS) In soybean (Glycine sp.) β-conglycinin represents the major seed storage protein. The level of expression is very high; each of the two to four subunits account for between 12 to 20% of the total protein in the seed. The nucleotide sequence of the promoter region of Glycine max α'-subunit of β-conglycinin has been published by Doyle et al., J. Biol. Chem. 261:9228 (1986). The promoter (gmP) is amplified from 250 ng total Glycine max DNA and, by using CPCR, a Hindlll site is added to the 5' end as well as an Ncol site at the translation initiator codon (ATG) . Using the published sequence oligomers are designed for amplification of the promoter (oligomer sequences are shown in Chart 3(a)). The sequence of the amplified 600 b.p. gene, designated gmP in Chart 3(b), is verified by restriction enzyme mapping and nucleotide sequencing for accuracy.
The fragment gmP was subjected to digestion by Ncol and ligated to the Ncol digested fragment pvS (described In Example 1) to obtain the fragment referred to as gmPpvS in Chart 3(c). The resulting fragment, gmPpvS, is digested with Hindlll, ligated into Hindlll digested pUC18, and the clone pUC18gmPpvS is obtained. (See Chart
3(d)). This expression cassette is used to direct seed specific expression of coding regions which require transcriptional fusions, similar to that shown in Example 1. However, when incorporated into the Glycine genome the level of expression may be somewhat higher than the Phaseolus expression cassette of Example 1, due to the more native environment for the Glycine cassette.
EXAMPLE 4
CONSTRUCTION OF AN EXPRESSION CASSETTE CONTAINING THE GLYCINE MAX α'-SUBUNIT OF β-CONGLYCININ PROMOTER (gmP) AND SIGNAL PEPTIDE (gmSP) REGIONS AND THE PHASEOLIN TRANSLATION TERMINATION (pvTT) SIGNAL AND POLYADENYLATION (pvS) SIGNALS. In this example we describe construction of an expression cassette and plasmid which Is used for the expression of modified seed storage protein genes or heterologous genes in the seeds of dicotyledonous plants. Oligomers are used to amplify the promoter and signal peptide region from Glycine max genomic DNA. For the oligomer which is read 5' → 3' the same 5' primer as described in Example 3 is used. To ensure complete reading of the signal peptide, the 3' oligomer primer is designed to hybridize just beyond the signal peptide cleavage point described by Doyle et al, (1985), which occurs between amino acid residues 25 and 26. Therefore, we have selected to add the Ncol site after amino acid residue 29. The primers used for this amplification are shown in Chart 4(a).
The result of this amplification, referred to as gmPgmSP in Chart 4(b), is a fragment of 690 b.p. Authenticity of this fragment is checked by nucleotide sequencing. It is then subjected to digestion by Ncol and ligated to the Ncol cut fragment pvTTpvS described in Example 2. The resulting fragment, referred to as gmPgmSPpvTTpvS in Chart 4(c), was subjected to digestion by Hindlll and cloned into Hindlll digested pUC18. The clone (designated pUC18gmPgmSPpvTTpvS in Chart 4(d)) is isolated and its structure checked by restriction enzyme mapping and nucleotide sequencing. This expression cassette is used for the expression of modified seed storage protein genes or foreign genes in the seeds of dicotyledonous plants.
EXAMPLE 5
CONSTRUCTION OF AN EXPRESSION CASSETTE CONTAINING THE PROMOTER (zmP) AND POLYADENYLATION SIGNAL (zmS) FROM
THE ZEA MAYS 15 kDAL SEED STORAGE PROTEIN GENE.
The zein proteins constitute about 80% of the total seed protein of Zea mays (corn); however, there are many zein-related genes responsible for the production of these zein proteins. Recently, one particular member of the zein gene families was found to be represen- ted in low copy number, but responsible for the production of about 10% of the total zein proteins. These genes are referred as β-zeins (or 15 Kd) genes and the sequence of one member has been described by Pedersen et al. (1986). However, the nucleotide sequence of the β- zein gene reported by Pedersen only extends about 233 b.p. 5' of the translation initiation, thus the complete β-zein gene promoter may not be present. To obtain more of the β-zein promoter we isolated a second gene, referred to as pZeinl5K, and our nucleotide sequence analysis (Chart 5) shows that this clone contains an additional 110 b.p. of 5' flanking DNA, giving a total promoter region of about 350 b.p. to the translation initiation codon (see Chart 5). Analysis of many zein type genes has shown that sequences responsible for controlling the developmental expression of seed specific genes are located within these 350 b.p. (see review by Thompson and Larkins, BioEssays, 10:109-113 1989).
Clone pZein15K (Chart 6(a)) provides the starting material for the CPCR amplification of its promoter and polyadenylation regions. However, prior to amplification an indigenous Ncol site in the promoter region was removed by flushing with mung bean nuclease following the procedure of Maniatis, et al, (1982), which caused a loss of four base pairs (CATG). These four base pairs are located between the CCAAAT and TATAA elements and thus should not affect the function of the promoter. This modified β-zein gene promoter region was amplified using CPCR to add a Sail site and a Ncol site to the 5' and 3' primers, respectively. The sequences of the oligomers used to accomplish this are shown in Chart 6(b). The amplified product was a 350 b.p. fragment which is referred to as zmP in Chart 6(c). Additional CPCR oligomer primers were used to amplify the polyadenylation region of pZein 15K so as to add a (5') Ncol site and a (3') Sail site. Oligomers sequences are shown in Chart 6(d). The amplified product was a fragment of approximately 700 b.p. which Is referred to as zmS in Chart 6(e). The two amplified fragments, zmP and zmS, are subjected to digestion with Ncol followed by ligation and isolation of the fragment referred to as zmPzmS in Chart 6(f). zmPzmS Is digested with Sail and cloned into Sail digested pUC18. Clone pUC18zmPzmS (Chart 6(g)) is isolated and its structure verified using restriction enzyme mapping and nucleotide sequencing. The expression cassette pUC18zmPzmS is used for seed specific expression of modified seed storage protein genes or other genes which do not require a zein signal peptide and/or a zein translation terminator.
EXAMPLE 6
CONSTRUCTION OF A MONOCOT SEED SPECIFIC EXPRESSION CASSETTE CONTAINING THE β-ZEIN PROMOTER (zmP), SIGNAL PEPTIDE (zmSP), TRANSLATION TERMINATOR (zmTT) AND POLYADENYLATION SIGNAL (zmS). This expression cassette is similar to that in Example 5, with the addition of the β-zein signal peptide and translation terminator signals. As in Example 5, CPCR adds a 5' Sail site and a 3' inframe Ncol site. Since in this case, however, the signal peptide cleavage point is located between amino acid residues 20 and 21, we have included amino acid sequences up to and including residue 25. Thus, the Ncol site is placed 3' of this residue. The oligomer primers used to engineer and amplify this zein promoter and signal peptide fragment are shown in Chart 7(a). This amplification results in a 400 b.p. fragment referred to as zmPzmSP in chart 7(b).
In a similar manner, CPCR amplification of the β-zein transla tion terminator and polyadenylation signal regions of pZein 15K is done using a linker engineered to contain a 5' inframe Ncol site and a 3 ' Sail site; sequences are shown in Chart 7(c). Amplification results in a 720 b.p. fragment referred to as zmTTzmS in Chart 7(d). The fragments zmPzmSP and zmTTzmS are subjected to digestion by Ncol and ligated together to obtain the fragment referred to zmPzmSPzmTTzmS in Chart 7(e). This fragment is then subjected to digestion by Sail and cloned into Sail digested pUC18. The resulting clone, pUC18zmPzmSPzmTTzmS (Chart 7(f)), is confirmed by restriction enzyme site mapping and nucleotide sequencing. This seed specific expression cassette pUCzmPzmSpzmTTzmS is used to regulate the expression of modified seed storage protein genes or other genes which may require a monocot or β-zein signal peptide and inframe translation terminator signal.
EXAMPLE 7
PHASEOLUS VULGARIS , GLYCINE MAX, AND ZEA HAYS SEED SPECIFIC EXPRESSION CASSETTES FOR THE EXPRESSION OF BRAZIL NUT 2S SULFUR-RICH SEED STORAGE PROTEIN GENE. This example illustrates the use of the seed specific expression cassettes designed in Examples 1, 3, and 5 for the expression of a sulfur-rich (26% methionine + cystine) seed storage protein isolated from Brazil nut. The isolation and nucleotide sequence of this Brazil nut gene has been reported by Altenbach et al., Plant Mol. Biol. 6:239-250 (1967), and the cDNA clone referred to as pHS-3 contains all but 25 b.p. of the 5'-untranslated region, all of the coding DNA and the complete 3'-untranslated region, as illustrated in Chart β. Because the gene encodes a protein which is normally found in a plant seed environment it is believed that its stable expression and proper transportation to seed storage protein bodied are characteristics which are inherent to its structure. However, an analysis of the sequence reveals a second Ncol site located near the translation termination codon. Thus for the ease of engineering we eliminated this Ncol site by using CPCR to replace the native Ncol site with an inframe Ncol site. This results in the second G being replaced with a C nucleotide and removes the internal Ncol site. The Ncol site added via CPCR is used to clone this region into an expression cassette which has an inframe translation termination codon. For this construction we use the promoter regions described in Examples 1, 3, and 5 and translation termination and polyadenylation signals described in Examples 2, 4, and 6.
CPCR amplification of the Brazil nut gene added was used to engineer flanking Ncol sites; the 5' Ncol site is added to take advantage of the naturally occurring sites located at the Brazil nut translational initiation codon (ATG), and the second Ncol site is removed and replaced by a Ncol site as described above. A further advantage of this modification is the addition of the amino acid tryptophan to the gene. Tryptophane is also deficient in the proteins of many plant seeds thus its addition results in a more nutritionally complete seed protein. The primers for the amplification of the Brazil nut coding region are shown in Chart 9(a). Amplification yields a 420 b.p. fragment which is referred to as BZ in Chart 9(b). This fragment is subjected to digestion with Ncol and Inserted into the expression cassettes described earlier. The following clones are isolated, pUC18pvPBZpvTTpvS, pUC18gmPBZpvTTpvS, and pUC18zmPBZ zmTTzmS, and their structures are checked using restriction enzyme mapping and nucleotide sequencing. The structure of these clones are shown in Charts 9(c)(i), (ii), and (iii). These cassettes nay then be removed and placed Into an appropriate vector for transfer Into plants. These transfer vectors may be used in either the Agrobacterium systems or in systems which utilize microprojectile bombardment of plant tissues.
EXAMPLE 8
USE OF PHASEOLUS VULGARIS , GLYCINE MAX, AND ZEA HAYS SEED SPECIFIC EXPRESSION CASSETTES FOR THE EXPRESSION OF A
SYNTHETIC SULFUR-RICH SEED STORAGE PROTEIN GENE. Because seeds from plants are deficient in more than one amino acid and because no single seed storage protein gene has been found which satisfies all of these needs, it is most likely that these needs will be accomplished via a synthetic coding region. To illustrate this possibility three oligomers are synthesized (shown in Chart 10) representing portions of the Brazil nut coding DNA. As shown in Chart 10(a), the first oligomer encodes the major portion of the 9 kD subunit (BZ-1), which contains 35% sulfur amino acids for the 48 amino acid peptide. Chart 10(b) shows a second oligomer con sisting of the complete 9 kD subunit (BZ-2) which encodes 70 amino acids containing 28.5% sulfur amino acids . The third oligomer, Chart
10(c) , is the complete 12 kD subunit (BZ-3) which encodes 93 amino acids containing 28% sulfur amino acids. BZ-1 was synthesized as a single 144 base oligomer, BZ-2 as a 210 base oligomer and BZ-3 as a
279 base oligomer. These oligomers were synthesized by utilizing the published sequence for the BZ gene and were completed on an Applied
Biosystems, Inc. Model 380A DNA Synthesizer. The brazilnut gene fragments were complemented, purified, and had Ncol sites added on both 5' and 3' ends using CPCR amplification. As is true of the BZ gene in Example 7, each inframe Ncol site yields the codon TGG which encodes tryptophan, making resulting plant seed a more nutritionally complete foodstuff.
The primers used for amplification of BZ-1 are shown in Chart 11(a), those for BZ-2 in Chart 11(b), and those for BZ-3 in Chart 11(c). Because of the addition of the extra nucleotides the fragments isolated after amplification are about 15 b.p. larger than the original synthesized fragments BZ-1, BZ-2, and BZ-3. These fragments are subjected to digestion with Ncol and cloned into the Ncol cut expression cassettes described in Examples 2, 4 and 6. The following clones are isolated, pUC18pvPpvSPSZ-1, -2 , and -3pvTTpvS (Charts 12(a) -(c)), pUC18gmPgmSPBZ-2, -2, and -3pvTTpvS (Charts 13(a)-(c)), pUC18zmPzmSPBZ-1, -2 , and -3pvTTpvS (Charts 14(a) -(c)). The structure of these clones is checked by restriction enzyme mapping and nucleotide sequencing. The expression cassettes contained within these plasmids may removed and transferred into vectors used for Agrobacterium systems or may used with microprojectile bombardment of plant tissues.
EXAMPLE 9
SEED SPECIFIC EXPRESSION CASSETTES FOR
THE EXPRESSION OF A FOREIGN GENE.
In this example we have selected to use the seed expression cassettes described above for the engineering of vectors capable of expressing the bovine somatotropin gene (Bst); this gene is also referred to as the bovine growth hormone (Bgh) gene. The sequence of the Bst gene has been determined by Woychik et al., Nucleic Acids Research, 10:7197-7210 (1982), however, this sequence is not accep table for expression in a plant system due to the presence of 4 introns in the native gene (Barta et al. 1986). To avoid this problem we use an intronless (minigene) construction of the Bst gene obtained from Professor Fritz Rottman, Department of Biology and Microbiology, Case Western Reserve University, Cleveland OH. This clone is referred to as pSVGH-1 (delta IVS) and Is used to provide the Bst coding region for CPCR engineering. As is clear from the prior examples, the use of CPCR allows the coding region to be engineered in such a manner to be accepted by any of the expression cassettes described in Examples 1 to 6. These arrangements can include the use of different gene regulatory regions which can be provided by the expression cassette or even from the Bst gene.
Bst protein is encoded in a gene which contains a 26 amino acid signal peptide followed by a coding region containing 191 amino acids. The clone pSVGH-1 also contains the indigenous Bst gene polyadenylation signal. For the Bst protein to be active its signal peptide must be removed, thus by using CPCR in combination with the cassettes described above we have the option of expressing It with or without its signal peptide, with or without a seed protein signal peptide, and with or without its polyadenylation signal. Thus many different construction can be derived for the expression of Bst in plant seeds. This example illustrates several of these expression cassettes coding for Bst.
The first series of constructions uses the seed storage protein gene expression promoters, described in Examples 1, 3 and 5, to construct transcriptional fusions genes which use the Bst signal peptide and polyadenylation signal. Using the clone pSVGH (delta
IVS) as starting material, CPCR is used to add an Ncol site to its 5' end (retaining the translation initiation signal) and adding a Hindlll site 3' of the Bst polyadenylation signal. The oligomer primers of this construction are shown in Chart 15(a) and are used to amplify a 840 b.p. fragment referred to as bvSPBSTbvTTbvS. This fragment is subjected to digestion by Ncol and cloned into the seed promoter fragments described in Examples 1 and 3, see Charts 15(b) and 16(a). These ligated seed promoter-Bst fragments are then digested with Hindlll followed by ligation to Hindlll digested pUC18 and the following clones isolated, pUC18pvPbvSPBSTbvTTbvS and pUC18gmPbvSPBSTbvTTbvS, as shown in Charts 15(c) and 16(b), respectively. The correct sequence is verified using restriction enzyme site mapping and nucleotide sequencing. The inserts from these clones can be removed and transferred into either an Agrobacterium vector system or into a vector to be used for mlcroprojectile bombardment of plant tissues.
To avoid the possibility of having an unstable mRNA product, the Bst gene can be cloned directly into the Ncol site located within the seed expression cassettes shown in Examples 1 and 3. To accomplish this only the 3' oligomer primer needs to be changed to include Ncol. This is done with the use of the oligomer primer shown in Chart 17(a) and CPCR engineering. The fragment containing the Bst gene obtained from this amplification is also about 640 b.p. in length, and is referred to as bvSPBSTbvTTbvS in Chart 17(b). This fragment is digested with Ncol and cloned into the Ncol site of the plant expression cassette shown in Example 1. From this ligation, a clone designated pUC18pvPbvSPBSrbvTTbvSpvS is obtained and is shown in Charts 17(c). In a similar manner, the expression cassette of Example 3 is inserted into bvSPBSTbvTTbvS (Chart 18(a)) resulting in the plasmid pUC18gmPbvSPBSTbvTTbvSpvS of Chart 18(b).
Additionally, by the use of another 3' oligomer primer a similar construction is derived which does not include the Bst polyadenylation signal. The 3' primer used to obtain the Bst such a fragment without its polyadenylation signal is shown In Chart 19(a). Amplification yields a fragment of about 650 b.p., referred to as pvSPBstbvTT in Chart 19(b). This is subjected to digestion by Ncol and cloned into the plant expression vector shown in Example 1, resulting in clone pUC18pvPbvSPBSTbvTTpvS (Chart 19(c)). In addition, this Bst fragment (Chart 20(a)) is ligated into the vector of Example 3 which results in clone pUC18gmPbvSPBSrbvTTpvS, shown in Chart 20(b).
EXAMPLE 10
SEED SPECIFIC EXPRESSION CASSETTES FOR THE EXPRESSION OF A FOREIGN GENE.
In its active form, Bst does not include its 19 amino acid signal peptide, which is cleaved soon after synthesis (Woychik et al., 1982). However, in a plant system it is doubtful that this signal peptide would be removed, thus its removal would have to be done as part of a purification procedure. In addition, the above constructions do not include the normal signal peptides for the plant seed storage protein genes to ensure correct targeting of the Bst peptide. The following constructions illustrate a translational fusion, made with the Bst protein gene, which does not include the
Bst signal peptide but d'oes contain the signal peptides from the plant seed storage protein genes. This is accomplished by using CPCR to amplify the part of the Bst gene which does not Include the Bst signal peptide and cloning it into the expression cassettes described in Examples 2 and 4. The polypeptide resulting from expression from these fused gene is expected to initially include the seed storage signal peptides, which should be removed as a result of normal proteolytic cleavage to yield a Bst polypeptide which would be identical to the naturally occurring peptide except for the presence of two to four additional amino acids at its N-terminus. These additional amino acids are needed to ensure that the signal peptide cleavage site is recognized (see Examples 2, 4 and 6).
The appropriate Bst gene fragment can be obtained using CPCR amplification using the two primers shown In Chart 21(a) which amplifies a 600 b.p. fragment referred to as BSTbvTT in Charts 21(b) and 22(a). This fragment is subjected to digestion by Ncol and then ligated into the seed storage protein gene cassettes described in Examples 2 and 4 to obtain clones, pUC18pvPpvSPBSTbvTTpvS (Chart 21(c)) and pUC18gmPgmSPBSTbvTTpvS (Chart 22(b)). The engineered expression cassettes contained within these clones can be removed by digestion with Hindlll followed by transfer to vectors designed to be used with Agrobacterium or microprojectile gene transfer systems.
EXAMPLE 11
PLANT CONTAINING A CASSETTE FOR EXPRESSION OF BST
A plant was produced which contained an expression cassette coding for the bovine somatotropin gene, BST. We began by removing the regulatory region of the phaseolin gene from clone pPhas 8.8 BglII, J.L.Slightom, et al, Proc. Natl. Acad. Sci. U.S.A. 80:1897- 1901 (1983), by restriction endonuclease digestion with Bglll and the fragment purified following standardized techniques . Next , we used the transformed SV40 plasmid, pSVbGH-1, (described earlier) contain ing a complementary DNA (cDNA) of bovine somatatropin (Bst) and a Bst polyadenylation region; these are fused downstream of the SV40 promoter. Plasmid pSVbGH-1 contains a single restriction site for BamHI which lies between the SV40 promoter and the Bst gene. Finally, pPhasBst is made by digestion of pSVbGH-1 with BamHI followed by subsequent incorporation of the purified promoter region at the restriction site.
The region of the pPhasBst plasmid containing the Bst genes and the phaseolin regulatory region is removed by digestion with Kpnl and inserted at the Kpnl site of Aprobacterium binary vector pGA482G to make plasmid pGA482G/PhasBst. pGA482G/PhasBst is used to transform Agrobacterium strain C58Z707. A.G. Hepburn, et al, J. Gen. Microbiol. 131:2961-2969 (1965). Finally, the resultant Agrobacterium is used to infect cultured tobacco leaf pieces, from which whole plants were derived.
Transgenic tobacco plants containing the PhasBst gene are obtained through the R1 generation. Seeds from theses plants, R2 seeds, are stained with Bst antibody for TEM visualization. Results show localization of Bst protein within the protein storage bodies.
CHART 1
Construction of pUC18pvPpS expression cassette
(a)
(b)
(c)
(d) CHART 1 (continued)
(e)
(f)
CHART 2
Construction of pUC18pvPpvSPpvTTpvS
(a)
(b)
(c)
(d) CHART 2 (continued)
(e)
(f)
CHART 3
Construction of pUC18gmPpvS
(a)
(b)
(c)
(d)
CHART 4
Construction of pUC18gmPgmSPpvTTpvS
(a)
(b)
(c)
(d)
CHART 5 Nucleotide Sequence of pZein15k
GGATCCAAGGCACCTAACAACTAGCACAACATTACAACAAAATATTGGTGTATATGTGCC
1 ---------+ ---------+ --------+ ---------+ ---------+---------+ 60
TACAATAAGGTGATGAGTCATGGTGATGTGTAAAGAGGCATTACAAAGTTAGCTTCACAA
61 ---------+ ---------+ --------+ ---------+ ---------+---------+120
GCGTATGAATTCATTGACAACCCTTGACATGTAAAGTTGATTCATATGTATAAGAAAGCT
121 ---------+ ---------+ --------+ ---------+ ---------+---------+180 TAATGATCTATCTGTACATCCAAATCCATGTACTATGTTTCCACgTCATGCAACGCAACA 181 ---------+ ---------+ --------+ ---------+ ---------+---------+240
TTCCAAAACCATGGATCATCTATAAATGGCTAGCTCCCACATATGAACTAGTCTCTATCA
241 ---------+ ---------+ --------+ ---------+ ---------+---------300
TCATCCAATCCAGATCAGCAAAGCGGCAGTGCGTAGAGAGGATCGTCGAACAGAACAGCA
301 ---------+ ---------+ --------+ ---------+ ---------+---------+360
M
TGAAGATGGTCATCGTTCTCGTCGTGTGCCTGGCTCTGTCAGCTGCCAGCGCCTCTGCAA
361 ---------+ ---------+ --------+ ---------+ ---------+---------+420
K M V I V L V V C L A L S A A S A S A M
TGCAGATGCCCTGCCCCTGCGCGGGGCTGCAGGGCTTGTACGGCGCTGGCGCCGGCCTGA
421 ---------+ ---------+ --------+ ---------+ ---------+---------+480
Q M P C P C A G L Q G L Y G A G A G L T
CGACGATGATGGGCGCCGGCGGGCTGTACCCCTACGCGGAGTACCTGAGGCAGCCGCAGT
481 ---------+ ---------+ --------+ ---------+ ---------+---------+540
T M M G A G G L Y P Y A E Y L R Q P Q C
GCAGCCCGCTGGCGGCGGCGCCCTACTACGCCGGGTGTGGGCAGACGAGCGCCATGTACC
541 ---------+ ---------+ --------+ ---------+ ---------+---------+600
S P L A A A P Y Y A G C G Q T S A M Y Q
AGCCGCTCCGGCAACAGTGCTGCCAGCAGCAGATGAGGATGATGGACGTGCAGTCCGTCG
601 ---------+ ---------+ --------+ ---------+ ---------+---------+660
P L R Q Q C C Q Q Q M R M M D V Q S V A CHART 5 (continued)
CGCAGCAGCTGCAGATGATGATGCAGCTTGAGCGTGCCGCTGCCGCCAGCAGCAGCCTGT
661 ---------+ ---------+ --------+ ---------+ ---------+--------- 720
Q Q L Q M M M Q L E R A A A A S S S L Y,
ACGAGCCAGCTCTGATGCAGCAGCAGCAGCAGCTGCTGGCACTCCAGGGTCTCAACCCCA
721 ---------+ ---------+ --------+ ---------+ ---------+---------780
E P A L M Q Q Q Q Q L L A L Q G L N P M
TGGCCATGATGATGGCGCAGAACATGCCGGCCATGGGTGGACTCTACCAGTACCAGTACC
781 ---------+ ---------+ --------+ ---------+ ---------+--------- 840
A M M M A Q N M P A M G G L Y Q Y Q Y Q
AGCTGCCCAGCTACCGCACCAACCCCTGTGGCGTCTCCGCTGCCATTCCGCCCTACTACT
841 ---------+ ---------+ --------+ ---------+ ---------+--------- 900
L P S Y R T N P C G V S A A I P P Y Y *
GATTCATGATATTTGGGAAATCTCCTCTATCCATCCCTCTCTATCTATATATGTAATAAT
901 ---------+ ---------+ --------+ ---------+ ---------+--------- 960
GCAGTAAGACGACACACATTATCATGTGTGGTATGACCAATAATATATGCATCATAATAA
961 ---------+ ---------+ --------+ ---------+ ---------+---------1020
AGTTTTGGTTTTAAAGAATTATCGGACGCTTGATATCTATGATGCTGGATAAATCAAAAC
1021 ---------+ ---------+ --------+ ---------+ ---------+---------1080
TTCTCATATAAATTGTAAATATTTCAAAATCTCTATTTAGGCTCCAATGGAGAGCATATG
1081 ---------+ ---------+ --------+ ---------+ ---------+---------1140 GGTAGAGTAGTATATATGCTTGAAATACTAACAACTAGCAAAGTGCGGGCACGTTGCTAC
1141 ---------+ ---------+ --------+ ---------+ ---------+---------1200
ATGCTCATTTATGCTCGAGCATGGAGTATAAAACATAAAGATATATATGTTCTATTGGCT
1201 ---------+ ---------+ --------+ ---------+ ---------+---------1260
TGGTAAACGTGGATATAGGTTTAAAGCCAACAACTATGGTTCGAATCCTCATTTATATAT
1261 ---------+ ---------+ --------+ ---------+ ---------+---------1320
MTCTATMTTTTAGCGTTTTTACTATTTAAATTTTGGGAGTAAGACGAGAAGGTGCAGG
1321 ---------+ ---------+ --------+ ---------+ ---------+---------1380 CHART 5 (continued)
GACTTACTCTTGACAACAAATCAATTCGGAAGACACAACAGTAAAAGATAAAATTTCCGA
1381 ---------+ ---------+ --------+ ---------+ ---------+---------1440
CGGCCAAATGCTTATGCTTCGACGACACCTATCCCTCGGCTCGTAATGGGTCGGAAATAA
1441 ---------+ ---------+ --------+ ---------+ ---------+---------1500
GGTTATTTCTGACGGCGGCCGTCGGAAATAGCTTATGTTCCGTACGGCCCGAAAGGGCCA
1501 ---------+ ---------+ --------+ ---------+ ---------+---------1560
TCGATCATTTACCTAAGATAACGATCGTAACGGCCGATGGTGGGTTCCACAGTTCTTATG
1561 ---------+ ---------+ --------+ ---------+ ---------+---------1620
TCGACGCACTGCTAACCATCGATTATTCGATTCTATGTCTCCGAGGCTTATAGTATTGCG
1621 ---------+ ---------+ --------+ ---------+ ---------+---------1680 GGCAAACTTATTTGGCATTATGAACTTAACGGAACGATTACATATATATACATATTGATT
1681 ---------+ ---------+ --------+ ---------+ ---------+---------1740
CATATAC
1741 -------- 1747
CHART 6
Construction of pUC18zmPzmS
(a)
(b)
(c)
(d) CHART 6 (continuation)
(e)
(f)
(g)
CHART 7
Construction of pUC18zmPzmSPzmTTzmS
(a)
(b)
(c)
(d) CHART 7 (continuation) (e)
(f)
CHART 8
Nucleotide Sequence of Brazil Nut
Sulfur-Rich Seed Storage Protein
TCCACCACTGCTCTGTATCACATATACCAACCCACGCTTATACCCAGAATCACCATGGCG
1 ---------+ ---------+ --------+ ---------+ ---------+--------- 60
M A
AAGATTTCAGTTGCGGCAGCAGCCCTCCTTGTCCTCATGGCCCTCGGCCACGCCACCGCC
61 ---------+ ---------+ --------+ ---------+ ---------+--------- 120
K I S V A A A A L L V L M A L G H A T A
TTCCGGGCCACCGTCACCACCACAGTGGTGGAGGAGGAGAACCAGGAGGAGTGTCGCGAG
121 ---------+ ---------+ --------+ ---------+ ---------+--------- 180
F R A T V T T T V V E E E N Q E E C R E
CAGATGCAGAGACAGCAGATGCTCAGCCACTGCCGGATGTACATGAGACAGCAGATGGAG
181 ---------+ ---------+ --------+ ---------+ ---------+--------- 240
Q M Q R Q Q M L S H C R M Y M R Q Q M E
GAGAGCCCGTACCAGACCATGCCCAGGCGGGGAATGGAGCCGCACATGAGCGAGTGCTGC
241 ---------+ ---------+ --------+ ---------+ ---------+--------- 300
E S P Y Q T M P R R G M E P H M S E C C
GAGCAGCTGGAGGGGATGGACGAGAGCTGCAGATGCGAAGGCTTAAGGATGATGATGATG
301 ---------+ ---------+ --------+ ---------+ ---------+--------- 360
E Q L E G M D E S C R C E G L R M M M M
AGGATGCAACAGGAGGAGATGCAACCCCGAGGGGAGCAGATGCGAAGGATGATGAGGCTG
361 ---------+ ---------+ --------+ ---------+ ---------+--------- 420
R M Q Q E E M Q P R G E Q M R R M M R L
GCCGAGAATATCCCTTCCCGCTGCAACCTCAGTCCCATGAGATGCCCCATGGGTGGCTCC
421 ---------+ ---------+ --------+ ---------+ ---------+--------- 480
A E N I P S R C N L S P M R C P M G G S
ATTGCCGGGTTCTGAATCTGCCACTAGCCAGTGCTGTAAATGTTAATAAGGCTCTCACAA
481 ---------+ ---------+ --------+ ---------+ ---------+--------- 540
I A G F * CHART 8 (continuation)
ACTAGCTCTTTGTTGGCTTTTGGCCGGAGACTAGGGTGTGGGATTAATAATAATAGCACA
541 ---------+ ---------+ --------+ ---------+ ---------+--------- 600
CTATCGTGTGTTCTCAGCTTC
601 ---------+ ---------+ 621
CHART 9
Construction of Expression Cassettes Using the Brazil Nut
Sulfur-Rich Seed Storage Protein Gene (BZ)
(a)
(b)
(c)(i)
(c)(ii)
(c) (iii) CHART 10
(a) Nucleotide Sequence of a Synthetic 9 kD subunit of a Brazil
Nut Sulfur-Rich Seed Storage Protein (BZ-1)
ATGGAGCCGCACATGAGCGAGTGCTGCGAGCAGCTGGAGGGGATGGACGAGAGCTGCAGA
1 ---------+ ---------+ --------+ ---------+ ---------+--------- 60
M E P H M S E C C E Q L E G M D E S C R
TGCGAAGGCTTAAGGATGATGATGATGAGGATGCAACAGGAGGAGATGCAACCCCGAGGG
61 ---------+ ---------+ --------+ ---------+ ---------+--------- 120
C E G L R M M M M R M Q Q E E M Q P R G GAGCAGATGCGAAGGATGATGAGG
121 ---------+ ---------+ ----144
E Q M R R M M R
(b) Nucleotide Sequence of a Synthetic Brazil Nut Sulfur- Rich Seed StorageProtein Complete 9 kD Gene (BZ-2)
CCCAGGCGGGGAATGGAGCCGCACATGAGCGAGTGCTGCGAGCAGCTGGAGGGGATGGAC
1 ---------+ ---------+ --------+ ---------+ ---------+--------- 60
P R R G M E P H M S E C C E Q L E G M D
GAGAGCTGCAGATGCGAAGGCTTAAGGATGATGATGATGAGGATGCAACAGGAGGAGATG
61 ---------+ ---------+ --------+ ---------+ ---------+--------- 120 E S C R C E G L R M M M M R M Q Q E E M
CAACCCCGAGGGGAGCAGATGCGAAGGATGATGAGGCTGGCCGAGAATATCCCTTCCCGC
121 ---------+ ---------+ --------+ ---------+ ---------+--------- 180 Q P R G E Q M R R M M R L A E N I P S R
TGCAACCTCAGTCCCATGAGATGCCCCATG
181 ---------+ ---------+ --------+ 210
C N L S P M R C P M CHART 10 (continued)
(c) Nucleotide Sequence of a Synthetic Brazil Nut 12 kD Subunit
of the Sulfur-Rich Seed Storage Protein Gene (BZ-3)
CAGCAGATGCTCAGCCACTGCCGGATGTACATGAGACAGCAGATGGAGGAGAGCCCGTAC
1 ---------+ ---------+ --------+ ---------+ ---------+--------+ 60
Q Q M L S H C R M Y M R Q Q M E E S P Y
CAGACCATGCCCAGGCGGGGAATGGAGCCGCACATGAGCGAGTGCTGCGAGCAGCTGGAG
61 ---------+ ---------+ --------+ ---------+ ---------+--------+ 120
Q T M P R R G M E P H M S E C C E Q L E
GGGATGGACGAGAGCTGCAGATGCGAAGGCTTAAGGATGATGATGATGAGGATGCAACAG
121 ---------+ ---------+ --------+ ---------+ ---------+--------+ 180
G M D E S C R C E G L R M M M M R M Q Q
GAGGAGATGCAACCCCGAGGGGAGCAGATGCGAAGGATGATGAGGCTGGCCGAGAATATC
181 ---------+ ---------+ --------+ ---------+ ---------+--------+ 240
E E M Q P R G E Q M R R M M R L A E N I
CCTTCCCGCTGCAACCTCAGTCCCATGAGATGCCCCATG
241 ---------+ ---------+ --------+ --------- 279
P S R C N L S P M R C P M
CHART 11
(a)
(b)
(c)
CHART 12
Phaseolin Expression Cassettes Using Brazil Nut Gene Fragments
(a)
(b)
(c)
CHART 13
Glycine Expression Cassettes Using
Brazil Nut Gene Fragments
CHART 14
Zein Expression Cassettes Using Brazil Nut Gene Fragments
(a)
(b)
(c)
CHART 15
Phaseolin Expression Cassettes Using BST Gene
(a)
(b) (c)
CHART 16
Glycine Expression Cassettes Using BST Gene
(a)
(b) CHART 17
Phaseolin Expression Cassettes Using BST Gene
(a)
(b)
(c)
U
CHART 18
Glycine Expression Cassettes Using BST Gene
(a)
(b) CHART 19
Phaseolin Expression Cassettes Using BST Gene
(a)
(b)
(c)
CHART 20
Glycine Expression Cassettes Using BSt Gene (a)
(b) m
CHART 21
Phaseolin Expression Cassettes Using BST Gene
(a)
(b)
(c) CHART 22
Glycine Expression Cassettes Using BST Gene
(a)
(b) m

Claims

CLAIMS We claim:
1. A seed specific expression cassette having gene regulatory elements comprising:
a) a promoter selected from the group consisting of phaseolin promoter, α'-subunit of β-conglycinin promoter, and β-zein promoter; b) a translation initiation signal selected from the group consisting of phaseolin translation initiation signal, α'-subunit of β-conglycinin translation initiation signal, β-zein translation
Initiation signal, and animal gene translation initiation signal; c) a gene selected from the group consisting of an animal gene and a gene from brazil nut 2S storage protein;
d) a poly-A signal selected from the group consisting of a phaseolin poly-A signal and an animal gene poly-A signal;
wherein the promoter is upstream and operably linked to the initiation signal, the initiation signal is upstream and operably linked to the gene, and the gene is upstream and operably linked to the poly(A) signal; and provided that when the gene regulatory element is amplified from genomic or synthetic DNA the regulatory region is flanked by a restriction enzyme recognition site selected from the group consisting of Ncol, Hindlll, and Sail; and further provided when the translation initiation signal is from phaseolin the promoter is from phaseolin, and when the translation initiation signal is from the α'- subunit of β-conglycinin the promoter is from the α'-subunit of β- conglycinin, and when the gene is from brazil nut the promoter and translation initiation signal are derived from the same genome.
2. A seed specific expression cassette according to Claim 1 wherein the promoter is from phaseolin, the remaining regions are from bovine somatotropin, and further comprising a SV40 promoter region upstream and operably linked to the phaseolin region.
3. A seed specific expression cassette according to Claim 1 wherein the gene is an animal gene from bovine somatotropin and includes the translation initiation signal.
4. A seed specific expression cassette according to Claim 3 wherein the promoter is from phaseolin, the remaining elements are from bovine somatotropin, the regions linking both the promoter and the poly-A elements to the plasmid each code for Hindlll, and the regions linking the promoter to the translation initiation signal codes for Ncol.
5. A seed specific expression cassette according to Claim 3 wherein the promoter is from the α'-subunit of β-conglycinin, the remaining elements are from bovine somatotropin, the regions linking both the promoter and the poly-A elements to the plasmid each code for
Hindlll, and the region linking the promoter to the translation initiation signal codes for Ncol.
6. A seed specific expression cassette according to Claim 3 wherein the promoter and the poly-A signal are from phaseolin, the remaining elements are from bovine somatotropin, the region linking both the promoter and the poly-A elements to the plasmid each code for
Hindlll, and the region linking the promoter to the translation initiation signal and the gene to the poly-A signal code for Ncol.
7. A seed specific expression cassette according to Claim 3 wherein the promoter and the poly-A signal are from the α'-subunit of β-con glycinin, the remaining elements are from bovine somatotropin, the region linking both the promoter and the poly-A elements to the plasmid each code for Hindlll, and the region linking the promoter to the translation initiation signal and the gene to the poly-A signal code for Ncol.
8. A seed specific expression cassette according to Claim 3 wherein the promoter, translation initiation signal, and poly-A signal are from phaseolin, the region linking both the promoter and the poly-A elements to the plasmid each code for Hindlll, and the region linking the translation initiation signal to the gene and the gene to the poly-A signal code for Ncol.
9. A seed specific expression cassette according to Claim 3 wherein the promoter is from phaseolin, the translation initiation signal and gene are from bovine somatotropin, and having a first poly-A signal from bovine somatotropin upstream and operably linked to a second poly-A signal from phaseolin, the region linking both the promoter and the second poly-A elements to the plasmid each coding for
Hindlll, and the region linking the promoter to the translation initiation signal and the first poly-A signal to the second poly-A signal coding for Ncol.
10. A seed specific expression cassette according to Claim 3 wherein the promoter is from the α'-subunit of β-conglycinin, the translation initiation signal and gene are from bovine somatrtropin, and having a first poly-A signal from bovine somatotropin upstream and operably linked to a second poly-A signal from phaseolin, the region linking both the promoter and the second poly-A element to the plasmid each coding for Hindlll, and the region linking the promoter to the translation initiation signal and the first poly-A signal to the second poly-A signal coding for Ncol.
11. A seed specific expression cassette according to Claim 1 comprising:
a) a promoter selected from the group consisting of phaseolin promoter, α'-subunit of β-conglycinin promoter, and β-zein 15K promoter.
b) a translation initiation signal selected from the group consisting of phaseolin translation initiation signal, α'-subunit of 0-conglycinin translation initiation signal, and β-zein 15K translation initiation signal;
c) a gene selected from the group consisting of brazil nut gene and brazil nut gene subunit;
d) a translation termination signal selected from the group consisting of phaseolin translation termination signal and β-zein 15K translation termination signal;
e) a poly-A signal selected from the group consisting of phaseolin poly-A signal andβ -zein 15K poly-A signal;
wherein the promoter is upstream and operably linked to the initiation signal, the initiation signal is upstream and operably linked to the gene, the gene is upstream and operably linked to the translation termination signal, and the translation termination signal is
upstream and operably linked to the poly-A signal, and further provided that the gene regulatory element is flanked by a restriction enzyme recognition site selected from the group consisting of Ncol, Hindlll, and Sail; and further provided that the promoter and
translation initiation signals are derived from the same genome.
12. A seed specific expression cassette according to Claim 11 wherein the gene is BZ.
13. A seed specific expression cassette according to Claim 12 wherein the promoter, translation termination signal, and poly-A signal are from phaseolin, the region li nking both the promoter and poly-A elements to the plasmid each code for Hindlll, and the region linking the promoter to the gene- and the gene to the termination signal code for Ncol.
14. A seed specific expression cassette according to Claim 12 wherein the promoter is from the α'-subunit of β-conglycinin, the translation termination signal and poly-A signal are from phaseolin, the region linking both the promoter and poly-A elements to the plasmid each code for Hindlll, and the region linking the promoter to the gene and the gene to the termination signal code for Ncol.
15. A seed specific expression cassette according to Claim 12 wherein the promoter, translation termination signal, and poly-A signal are from β -zein 15K, the region linking both the promoter and poly-A elements to the plasmid each code for Sail, and the regions linking the promoter to the gene and the gene to the termination signal code for Ncol.
16. A seed specific expression cassette according to Claim 11 wherein the gene is selected from the group consisting of BZ-1, BZ-2, and BZ-3.
17. A seed specific expression cassette according to Claim 16 wherein the remaining elements are from phaseolin, the region linking both the promoter and poly-A elements to the plasmid each code for Hindlll, and the region linking the translation initiation signal to the gene and the gene to the termination signal code for Ncol.
18. A seed specific expression cassette according to Claim 16 wherein the remaining elements are from β-zein 15K, the region linking both the promoter and poly-A elements to the plasmid each code for Sail, and the region linking the translation initiation signal to the gene and the gene to the termination signal code for Ncol.
19. A cell comprising a seed specific expression cassette as claimed in Claim 1.
20. A seed or plant comprising cells as claimed in Claim 19.
EP19910907063 1990-03-05 1991-02-14 Protein expression via seed specific regulatory sequences Withdrawn EP0519011A1 (en)

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US48917590A 1990-03-05 1990-03-05

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AU7583691A (en) 1991-10-10
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