DK2695103T3 - Scoringsfunktion for bindingsaffinitet, der indbefatter en straftildelingsbetingelse - Google Patents

Scoringsfunktion for bindingsaffinitet, der indbefatter en straftildelingsbetingelse Download PDF

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Publication number
DK2695103T3
DK2695103T3 DK12768363.9T DK12768363T DK2695103T3 DK 2695103 T3 DK2695103 T3 DK 2695103T3 DK 12768363 T DK12768363 T DK 12768363T DK 2695103 T3 DK2695103 T3 DK 2695103T3
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DK
Denmark
Prior art keywords
scoring
penalting
condition
function including
affinity
Prior art date
Application number
DK12768363.9T
Other languages
English (en)
Inventor
Richard A Friesner
Robert Murphy
Original Assignee
Schrodinger Llc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Schrodinger Llc filed Critical Schrodinger Llc
Application granted granted Critical
Publication of DK2695103T3 publication Critical patent/DK2695103T3/da

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Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16C—COMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
    • G16C20/00—Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
    • G16C20/50—Molecular design, e.g. of drugs
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment
    • G16B15/30—Drug targeting using structural data; Docking or binding prediction
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment

Landscapes

  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Medicinal Chemistry (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Computing Systems (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Medical Informatics (AREA)
  • Peptides Or Proteins (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
DK12768363.9T 2011-04-04 2012-04-03 Scoringsfunktion for bindingsaffinitet, der indbefatter en straftildelingsbetingelse DK2695103T3 (da)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US13/079,725 US8510058B2 (en) 2011-04-04 2011-04-04 Binding affinity scoring function penalizing compounds which make unfavorable hydrophobic contacts with localized water molecules in the receptor active site
PCT/US2012/031976 WO2012138640A1 (en) 2011-04-04 2012-04-03 Binding affinity scoring function including a penalty term

Publications (1)

Publication Number Publication Date
DK2695103T3 true DK2695103T3 (da) 2020-05-18

Family

ID=46928005

Family Applications (1)

Application Number Title Priority Date Filing Date
DK12768363.9T DK2695103T3 (da) 2011-04-04 2012-04-03 Scoringsfunktion for bindingsaffinitet, der indbefatter en straftildelingsbetingelse

Country Status (5)

Country Link
US (1) US8510058B2 (da)
EP (1) EP2695103B1 (da)
DK (1) DK2695103T3 (da)
ES (1) ES2788504T3 (da)
WO (1) WO2012138640A1 (da)

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6665856B1 (en) 2000-12-01 2003-12-16 Numerical Technologies, Inc. Displacing edge segments on a fabrication layout based on proximity effects model amplitudes for correcting proximity effects
US7801685B2 (en) 2004-08-19 2010-09-21 Drug Design Methodologies, Llc System and method for improved computer drug design
US7904283B2 (en) 2003-05-13 2011-03-08 The Penn State Research Foundation Quantum mechanics based method for scoring protein-ligand interactions
PL1856244T3 (pl) 2005-03-11 2014-03-31 Schroedinger Llc Przewidująca funkcja oceniająca do szacowania powinowactwa wiązania
US7739091B2 (en) 2006-03-23 2010-06-15 The Research Foundation Of State University Of New York Method for estimating protein-protein binding affinities
DK2162842T3 (da) 2007-05-14 2017-02-20 Schrödinger Llc Funktion til styrkevurdering af bindingsaffinitet, der indbefatter en faktor for omgivelserne af en ringgruppe
US7756674B2 (en) 2007-08-03 2010-07-13 The Trustees Of Columbia University In The City Of New York Methods of calculating differences of binding affinities between congeneric pairs of ligands by way of a displaced solvent functional

Also Published As

Publication number Publication date
WO2012138640A1 (en) 2012-10-11
EP2695103A1 (en) 2014-02-12
US8510058B2 (en) 2013-08-13
EP2695103A4 (en) 2014-09-10
ES2788504T3 (es) 2020-10-21
US20120252683A1 (en) 2012-10-04
EP2695103B1 (en) 2020-02-26

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