CO2019003580A2 - Método y sistema para la transmisión de datos bioinformáticos - Google Patents

Método y sistema para la transmisión de datos bioinformáticos

Info

Publication number
CO2019003580A2
CO2019003580A2 CONC2019/0003580A CO2019003580A CO2019003580A2 CO 2019003580 A2 CO2019003580 A2 CO 2019003580A2 CO 2019003580 A CO2019003580 A CO 2019003580A CO 2019003580 A2 CO2019003580 A2 CO 2019003580A2
Authority
CO
Colombia
Prior art keywords
transmission
genomic data
bioinformatics data
bioinformatics
data
Prior art date
Application number
CONC2019/0003580A
Other languages
English (en)
Inventor
Giorgio Zoia
Daniele Renzi
Original Assignee
Genomsys Sa
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Genomsys Sa filed Critical Genomsys Sa
Publication of CO2019003580A2 publication Critical patent/CO2019003580A2/es

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/50—Compression of genetic data
    • G—PHYSICS
    • G08—SIGNALLING
    • G08C—TRANSMISSION SYSTEMS FOR MEASURED VALUES, CONTROL OR SIMILAR SIGNALS
    • G08C15/00—Arrangements characterised by the use of multiplexing for the transmission of a plurality of signals over a common path
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/20—Heterogeneous data integration
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures

Landscapes

  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Medical Informatics (AREA)
  • Genetics & Genomics (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Molecular Biology (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • General Physics & Mathematics (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Time-Division Multiplex Systems (AREA)
  • Compression, Expansion, Code Conversion, And Decoders (AREA)
  • Mobile Radio Communication Systems (AREA)

Abstract

Método y sistema para la transmisión de datos genómicos. La transmisión de datos genómicos se lleva a cabo empleando la multiplexación de un conjunto de datos genómicos comprimidos estructurados en un flujo de datos genómicos divididos en unidades de acceso aleatoriamente accesibles.
CONC2019/0003580A 2016-10-11 2019-04-11 Método y sistema para la transmisión de datos bioinformáticos CO2019003580A2 (es)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/EP2016/074311 WO2018068830A1 (en) 2016-10-11 2016-10-11 Method and system for the transmission of bioinformatics data

Publications (1)

Publication Number Publication Date
CO2019003580A2 true CO2019003580A2 (es) 2019-08-30

Family

ID=57241051

Family Applications (1)

Application Number Title Priority Date Filing Date
CONC2019/0003580A CO2019003580A2 (es) 2016-10-11 2019-04-11 Método y sistema para la transmisión de datos bioinformáticos

Country Status (19)

Country Link
US (1) US20200051668A1 (es)
EP (1) EP3526712B1 (es)
JP (1) JP6949970B2 (es)
KR (1) KR20190062543A (es)
CN (1) CN110178183B (es)
AU (1) AU2016426572A1 (es)
BR (1) BR112019007313A2 (es)
CA (1) CA3039692A1 (es)
CL (1) CL2019000955A1 (es)
CO (1) CO2019003580A2 (es)
EA (1) EA201990931A1 (es)
ES (1) ES2867874T3 (es)
IL (1) IL265907A (es)
MX (1) MX2019004126A (es)
PE (1) PE20191059A1 (es)
PH (1) PH12019500795A1 (es)
PL (1) PL3526712T3 (es)
SG (1) SG11201903174SA (es)
WO (1) WO2018068830A1 (es)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10554220B1 (en) 2019-01-30 2020-02-04 International Business Machines Corporation Managing compression and storage of genomic data
WO2020231590A1 (en) * 2019-05-14 2020-11-19 Blayne Lequeux Healthcare data cloud system, server and method
EP3896698A1 (en) 2020-04-15 2021-10-20 Genomsys SA Method and system for the efficient data compression in mpeg-g

Family Cites Families (16)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP4852313B2 (ja) * 2006-01-20 2012-01-11 富士通株式会社 ゲノム解析プログラム、該プログラムを記録した記録媒体、ゲノム解析装置およびゲノム解析方法
WO2011122875A2 (ko) * 2010-03-31 2011-10-06 한국전자통신연구원 부호화 방법 및 장치, 그리고 복호화 방법 및 장치
EP2544113A1 (en) * 2011-07-05 2013-01-09 Koninklijke Philips Electronics N.V. Genomic/proteomic sequence representation, visualization, comparison and reporting using a bioinformatics character set and a mapped bioinformatics font
KR101922129B1 (ko) * 2011-12-05 2018-11-26 삼성전자주식회사 차세대 시퀀싱을 이용하여 획득된 유전 정보를 압축 및 압축해제하는 방법 및 장치
KR20190016149A (ko) * 2011-12-08 2019-02-15 파이브3 제노믹스, 엘엘씨 게놈 데이터의 동적 인덱싱 및 시각화를 제공하는 분산 시스템
US20140108323A1 (en) * 2012-10-12 2014-04-17 Bonnie Berger Leighton Compressively-accelerated read mapping
GB2523495A (en) * 2013-01-17 2015-08-26 Edico Genome Corp Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
CN103971694B (zh) * 2013-01-29 2016-12-28 华为技术有限公司 带宽扩展频带信号的预测方法、解码设备
CN103336916B (zh) * 2013-07-05 2016-04-06 中国科学院数学与系统科学研究院 一种测序序列映射方法及系统
NL2012222C2 (en) * 2014-02-06 2015-08-10 Genalice B V A method of storing/reconstructing a multitude of sequences in/from a data storage structure.
US10902937B2 (en) * 2014-02-12 2021-01-26 International Business Machines Corporation Lossless compression of DNA sequences
US10116632B2 (en) * 2014-09-12 2018-10-30 New York University System, method and computer-accessible medium for secure and compressed transmission of genomic data
WO2016081712A1 (en) * 2014-11-19 2016-05-26 Bigdatabio, Llc Systems and methods for genomic manipulations and analysis
JP6788587B2 (ja) * 2014-11-25 2020-11-25 コーニンクレッカ フィリップス エヌ ヴェＫｏｎｉｎｋｌｉｊｋｅ Ｐｈｉｌｉｐｓ Ｎ．Ｖ． ゲノムデータの安全な転送
US10394763B2 (en) * 2015-05-19 2019-08-27 Samsung Electronics Co., Ltd. Method and device for generating pileup file from compressed genomic data
WO2017153456A1 (en) * 2016-03-09 2017-09-14 Sophia Genetics S.A. Methods to compress, encrypt and retrieve genomic alignment data

Also Published As

Publication number Publication date
CL2019000955A1 (es) 2019-08-23
EA201990931A1 (ru) 2019-11-29
IL265907A (en) 2019-06-30
JP2019537170A (ja) 2019-12-19
AU2016426572A1 (en) 2019-06-06
CA3039692A1 (en) 2018-04-19
CN110178183B (zh) 2023-11-21
WO2018068830A9 (en) 2018-08-30
EP3526712B1 (en) 2021-03-24
MX2019004126A (es) 2019-06-12
KR20190062543A (ko) 2019-06-05
PH12019500795A1 (en) 2019-12-02
PL3526712T3 (pl) 2021-12-13
EP3526712A1 (en) 2019-08-21
PE20191059A1 (es) 2019-08-06
BR112019007313A2 (pt) 2019-09-17
US20200051668A1 (en) 2020-02-13
SG11201903174SA (en) 2019-05-30
JP6949970B2 (ja) 2021-10-13
ES2867874T3 (es) 2021-10-21
WO2018068830A1 (en) 2018-04-19
CN110178183A (zh) 2019-08-27

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