CN1989257A - P1-34 expression units with corynebacterium glutamicum - Google Patents
P1-34 expression units with corynebacterium glutamicum Download PDFInfo
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- CN1989257A CN1989257A CNA2005800242404A CN200580024240A CN1989257A CN 1989257 A CN1989257 A CN 1989257A CN A2005800242404 A CNA2005800242404 A CN A2005800242404A CN 200580024240 A CN200580024240 A CN 200580024240A CN 1989257 A CN1989257 A CN 1989257A
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Images
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-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/34—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Corynebacterium (G)
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- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- General Health & Medical Sciences (AREA)
- Biochemistry (AREA)
- Biophysics (AREA)
- Life Sciences & Earth Sciences (AREA)
- Genetics & Genomics (AREA)
- Medicinal Chemistry (AREA)
- Molecular Biology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Gastroenterology & Hepatology (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
Abstract
The invention relates to the use of nucleic acid sequences for regulating gene transcription and expression, said novel promoters and expression units, methods for modifying or inducing the transcription rate and/or expression rate of genes, expression cassettes containing said expression units, genetically modified microorganisms with a modified or induced transcription rate and/or expression rate, and methods for producing biosynthetic products by cultivating the genetically modified microorganisms.
Description
Technical field
The present invention relates to be used for purposes, the new promotor of the nucleotide sequence of regulatory gene transcript and expression and express the unit, be used to change or influence genetic transcription speed and/or express speed method, comprise this express unitary expression cassette, have a change or affected transcription rate and/or express speed through the microorganism of genetic modification and the method for preparing biosynthetic products by cultivation through genetically modified microorganism.
Background technology
Multiple biosynthetic products is fine chemicals for example, especially for example amino acid, VITAMIN and protein produce in cell by natural metabolic process, and are used to comprise in many industrial circles of food, feed, makeup, feed, food and medicine industry.These materials are referred to as fine chemicals/protein, and it especially comprises organic acid, raw albumen amino acid (proteinogenic amino acid) and non-raw albumen amino acid (non-proteinogenic amino acid), Nucleotide and nucleosides, lipid and lipid acid, glycol, carbohydrate, aromatic compound, VITAMIN and cofactor and protein and enzyme.By cultivating, produce these materials in best mode on the technical scale in order to produce and to secrete the bacterium that a large amount of specific desired substances are developed.Being particularly suitable for this purpose biological is excellent bacillus, and it is the Gram-positive nonpathogenic bacteria.
Known fermentation by coryneform bacterial strains, the especially fermentation of Corynebacterium glutamicum (Corynebacteriumglutamicum) prepare amino acid.Because it is significant, so on its production method of improvement, carried out unremitting effort.The improvement of method is with following relevant: the fermentation technique means for example stir and oxygen supply; Sugared concentration during perhaps the composition of nutritional medium for example ferments; Perhaps be used to obtain the processing of product for example by ion exchange chromatography or spraying drying; The perhaps internal performance characteristic of microorganism self.
By increasing indivedual genes and study its effect to fine chemicals/protein production, recombinant DNA technology has also been used some years in the strain improvement that produces fine chemicals/proteinic coryneform bacterial strains.
Fine chemicals, amino acid or method of protein are used to develop production, or the alternate manner of productivity that is used to increase or improve production fine chemicals, amino acid or the method for protein of preexist is to increase or change one or more expression of gene, and/or influences the translation of mRNA with the polynucleotide sequence that suits.Thus, influence can comprise increase, minimizing or other limiting factor of genetic expression, for example temporal expression pattern (chronological expression pattern).
The various components that bacterium is regulated sequence are well known by persons skilled in the art.For having made differentiation below in conjunction with the site: the instrumentality binding site is also referred to as operator gene; The rna polymerase holoenzyme binding site, be also referred to as-35 with-10 districts and rrna 16S RNA binding site, be also referred to as ribosome bind site or Shine-Dalgarno sequence.
For the purposes of the present invention, ribosome bind site sequence (being also referred to as the Shine-Dalgarno sequence) is meant and is positioned at the polynucleotide sequence of translation initiation codon upstream up to 20 base places.
According to document (E.coli and S.typhimurium, Neidhardt F.C.1995 ASM Press) report, the polynucleotide sequence of Shine-Dalgarno sequence are formed and base sequence string and the distance that is present in the polynucleotide sequence in the Shine-Dalgarno sequence all have remarkably influenced to translation initiation speed.
Nucleotide sequence with promoter activity can influence the formation of mRNA in every way.The promotor that its activity does not rely on biological physiology vegetative period is called composing type.And the chemistry of other promotor response external and physical stimulation, for example oxygen, metabolite, heat, pH etc.And other promotor demonstrates its strong activity dependent enzymes in different growing stages.For example, the interim or lucky promotor that in the stationary phase of microorganism growth, demonstrates special remarkable activity of the exponential growth of describing in the document in microorganism.According to pathways metabolism, two kinds of features of promotor can have useful effect to fine chemicals and proteinic productivity.
For example, in process of growth, close genetic expression, but after optimum growh again the promotor gene expression promoter can be used for regulating the gene that the control metabolite produces.So the bacterial strain of modification shows and the initial identical growth parameter(s) of bacterial strain, but each cell produces more voluminous thing.The modification of this type can increase titre (every liter product gram number /) and C productive rate (the product gram number in every gram C source).
Can from excellent bacillus species, isolate the nucleotide sequence that those can be used for strengthening or reducer is expressed.According to cell interior and/or external conditions, these promotors of being regulated can improve or reduce the speed of genetic transcription.In some cases, the existence that is called as the specificity factor of inductor can stimulate the transcription rate from promotor.Inductor can directly or indirectly influence the Transcription from promotor.The another kind of factor that is called as inhibition can reduce or suppress the Transcription from promotor.Similar with inductor, inhibition also can work directly or indirectly.On the other hand, temperature regulation type promotor also is known.Therefore, for example, can be by growth temperature being increased to the transcriptional level that the normal growth temperature that is higher than cell strengthens or weaken this class promotor.
A small amount of promotor from Corynebacterium glutamicum has been described so far.Promotor from the malate synthase gene of Corynebacterium glutamicum has been described among the DE4440118.This promotor is inserted into the upstream of the structure gene of coded protein.This class construct transforms and enters after the excellent bacillus, and the expression of the structure gene in this promotor downstream is regulated.In case in substratum, add suitable inductor, with regard to the inducement structure expression of gene.
People such as Reinscheid have described in Microbiology145:503 (1999) from the fusion of transcribing between pta-ack promotor of Corynebacterium glutamicum and the reporter gene (E.C. 2.3.1.28).When comprising this Corynebacterium glutamicum cell of transcribing fusion and growing on containing the substratum of acetate, the expression that presents reporter gene strengthens.The transformant of growing on glucose in contrast to this, does not demonstrate this report expression of gene to be strengthened.
People such as Pa ' tek have described in Microbiology142:1297 (1996) and can strengthen some dna sequence dna from Corynebacterium glutamicum that reporter gene is expressed in the Corynebacterium glutamicum cell.These sequences are compared so that determine the consensus sequence of Corynebacterium glutamicum promotor together.
Described among the patent WO 02/40679 and can be used for other dna sequence dna that regulatory gene is expressed from Corynebacterium glutamicum.These isolating polynucleotide show as the expression unit of the derived from corynebacterium glutamicum that can be used for increasing or reduce genetic expression.This patent has also been described the expression unit of derived from corynebacterium glutamicum and the recombinant plasmid that heterologous gene links together in addition thereon.The method that the promotor and the heterologous gene of derived from corynebacterium glutamicum are merged described herein especially can be used for regulating amino acid bio synthetic gene.
Summary of the invention
An object of the present invention is to provide other promotor and/or express the unit with sharp characteristic.
The contriver finds that the nucleic acid that has promoter activity by use can be realized this purpose, and described nucleic acid comprises the following sequence that is used for genetic transcription:
A) nucleic acid sequence SEQ .ID.NO.1, or
B) derive and on nucleic acid level, have a sequence of at least 90% identity from sequence SEQ.ID.NO.1 by nucleotide substitution, insertion or disappearance with sequence SEQ.ID.NO.1, or
C) nucleotide sequence of under stringent condition, hybridizing with nucleic acid sequence SEQ .ID.NO.1, or
B A)) or the function equivalent fragment of sequence C) D).
According to the present invention, " transcribing " is meant the process that begins to produce the complementary RNA molecule from dna profiling.This process relates to protein such as RNA polymerase, so-called Sigma Factors and transcription regulation protein white matter.Then, synthetic RNA is as the template in the translation process, and it produces the biosynthesizing active protein subsequently.
The formation speed that produces the biosynthesizing active protein is transcription rate and the result who translates speed.According to the present invention, two kinds of speed all can be affected, and therefore have influence on product formation speed in the microorganism.
According to the present invention, " promotor " or " nucleic acid " with promoter activity be meant with wait to transcribe the nucleic acid that the nucleic acid function ways of connecting is regulated this transcribed nucleic acid.
Thus, " functional connection " be meant one of nucleic acid of the present invention of for example having promoter activity and wait to transcribe other regulatory element (for example guaranteeing the nucleotide sequence and the terminator of transcribed nucleic acid) under nucleotide sequence and the felicity condition so that each regulatory element all can be brought into play the series arrangement that the mode of its function is carried out in this nucleotide sequence is transcribed.Therefore, the direct connection on the chemical sense is not an imperative.For example the Genetic Control sequence of enhancer sequence can be to than distant positions, even the target sequence on other dna molecular is carried out its function.(promptly at 3 ' end) was so that two sequences are together covalently bound after preferably a kind of like this arrangement, nucleotide sequence promptly to be transcribed were positioned at promoter sequence of the present invention.Thus, the distance between the nucleotide sequence of promoter sequence and pending transgene expression is preferably less than 200 base pairs, especially preferably less than 100 base pairs, very particularly preferably less than 50 base pairs.
According to the present invention, " promoter activity " is meant the RNA amount that is formed by promotor in specified time, promptly refer to transcription rate.
According to the present invention, " than promoter activity " is meant the amount of the RNA that each promotor is formed by promotor in specified time.
According to the present invention, term " wild-type " is meant suitable initial microorganism.
Decide on context, term " microorganism " be meant initial microorganism (wild-type) or genetically modified microorganism of the present invention or its both.
Preferably and especially can not clearly sort out under the situation of microorganism or wild-type, " wild-type " be meant for change or influence promoter activity or transcription rate, in order to change or to influence expression activity or express speed and for reference the biology under each situation of the content that increases biosynthetic products.
In a preferred embodiment, this is Corynebacterium glutamicum ATCC13032 with reference to biology.
In a preferred embodiment, used initial microorganism can produce the fine chemicals of wanting.With regard to the special preferred microorganism and particularly preferred fine chemicals L-Methionin, L-methionine(Met) and L-Threonine of corynebacterium genus bacteria, preferred those can produce the initial microorganism of L-Methionin, L-methionine(Met) and/or L-Threonine especially.The excellent bacillus that particularly preferred gene (ask gene) for the E.C. 2.7.2.4. of wherein for example encoding has gone to regulate or feedback inhibition has been eliminated or reduced.This bacterioid has the sudden change that for example causes feedback inhibition to reduce or eliminate in the ask gene, for example T311I sudden change.
Therefore, under the situation of " promoter activity of influence " that relate to the gene of comparing with wild-type or transcription rate, compare RNA formation with wild-type and be affected, wherein under this mode, do not exist described RNA to form in the wild-type.
Therefore, under the situation of " promoter activity of change " that relate to the gene of comparing with wild-type or transcription rate, changed with the RNA amount that produces in wild-type is compared specified time.
Thus, " change " preferably refer to increase or reduce.
For example, the ratio promoter activity that this can be by increasing or reduce endogenesis promoter of the present invention (for example by make this promoter mutation or by stimulating or suppressing this promotor) carries out.
Realize that another kind of possibility that promoter activity or transcription rate increase is that the nucleic acid of for example nucleic acid of the present invention by having promoter activity or ratio promoter activity with increase is regulated gene transcription in the microorganism, wherein gene is allogenic for the nucleic acid with promoter activity.
The nucleic acid of nucleic acid of the present invention by having promoter activity or the ratio promoter activity by having increase is preferably realized in the following manner to the adjusting of genetic transcription in the microorganism:
One or more are had promoter activity has change under suitable situation ratio promoter activity) nucleic acid of the present invention import in the microbial genome, so that had promoter activity in the ratio promoter activity that has change under the suitable situation what import) the control of nucleic acid of the present invention under carry out transcribing of one or more native genes; Or
One or more genes are imported in microbial genome, so that have promoter activity in the ratio promoter activity that has change under the suitable situation) the control of endogenous nucleic acid of the present invention under carry out transcribing of one or more quiding genes; Or
One or more nucleic acid constructs are imported in microorganisms, described nucleic acid construct comprise have promoter activity has change under suitable situation ratio promoter activity) nucleic acid of the present invention and functional one or more nucleic acid to be transcribed that are connected.
Nucleic acid of the present invention with promoter activity comprises:
A) nucleic acid sequence SEQ .ID.NO.1, or
B) derive and on nucleic acid level, have a sequence of at least 90% identity from sequence SEQ.ID.NO.1 by nucleotide substitution, insertion or disappearance with sequence SEQ.ID.NO.1, or
C) nucleotide sequence of under stringent condition, hybridizing with nucleic acid sequence SEQ .ID.NO.1, or
B A)) or the function equivalent fragment of sequence C) D).
Nucleic acid sequence SEQ .ID.NO.1 representative is from the permease (P of the supposition of Corynebacterium glutamicum
1-34) promoter sequence.SEQ.ID.NO.1 is corresponding to the promoter sequence of wild-type.
The invention still further relates to the nucleic acid with promoter activity, it comprises by nucleotide substitution, insertion or disappearance derives and have the sequence of at least 90% identity with the SEQ.ID.NO.1 sequence on nucleic acid level from the SEQ.ID.NO.1 sequence.
Can from the known multiple biology of for example genome sequence, find with comparalive ease by the nucleotide sequence in the database and above-mentioned sequence SEQ ID NO:1 are carried out identity for other natural example of the present invention of promotor of the present invention.
Begin easily to obtain manual activation subsequence of the present invention from sequence SEQ ID NO:1 by artificial variation and sudden change (for example by nucleotide substitution, insertion or disappearance).
Term in this specification sheets " substitutes " and is meant that one or more Nucleotide are by the displacement of one or more Nucleotide." disappearance " is meant the displacement that Nucleotide is connected directly." insertion " is meant the insertion of Nucleotide in nucleotide sequence, and the supporter directly connects by the form of one or more Nucleotide and replaces.
Identity between two kinds of nucleic acid is meant the Nucleotide identity on the nucleic acid complete length under each situation, particularly, identity is by the Vector NTI Suite7.1 software by Informax (U.S.), use Clustal method (Higgins DG, Sharp PM.Fast and sensitive multiplesequence alignments on a microcomputer.Comput Appl.Biosci.1989 April; 5 (2): 151-1) compare and calculate, wherein institute's parameter setting is as follows:
Multisequencing comparison parameter:
The open point penalty 10 in room
Point penalty scope 8 is separated in the room
The room is separated point penalty and is closed
Comparison postpones identity % 40
Close in the specific room of residue
Close in wetting ability residue room
Transition weight 0
Sequence is compared parameter in twos:
The FAST algorithm is opened
K-array size (tuplesize) 1
Gap penalty 3
Window size 5
Best diagonal lines number (Number of best diagona) 5
Therefore, the nucleotide sequence that has at least 90% identity with sequence SEQ ID NO:1 is meant the nucleotide sequence that relatively shows at least 90% identity as itself and sequence SEQ ID NO:1 when (particularly be according to parameter setting above having said procedure algorithm carry out).
Particularly preferred promotor shows and the identity of nucleic acid sequence SEQ .ID.NO.1 is 91%, is more preferably 92%, 93%, 94%, 95%, 96%, 97%, 98%, is preferably 99% especially.
In addition, can also begin, particularly begin easily from the multiple biology of genome sequence the unknown, to obtain other natural example of promotor from above-mentioned nucleotide sequence by known hybridization technique itself from sequence SEQ.ID NO:1.
Therefore, another aspect of the present invention relates to the nucleic acid with promoter activity, and it is included in the nucleotide sequence of hybridizing with nucleic acid sequence SEQ .ID.No.1 under the stringent condition.This nucleotide sequence comprises at least 10, more preferably more than 12,15,30,50 or especially preferably more than 150 Nucleotide.
According to the present invention, under stringent condition, hybridize.This kind hybridization conditions is described in for example Sambrook, J., Fritsch, E.F., Maniatis, T. exist: Molecular Cloning (ALaboratory Manual), second edition, Cold Spring Harbor Laboratory Press, 1989,9.31-9.57 page or leaf or Current Protocols in Molecular Biology, JohnWiley﹠amp; Sons, N.Y. (1989), 6.3.1-6.3.6.
Stringent hybridization condition specifically is meant: in 42 ℃ of overnight incubation, wash filter membrane with 0.1 * SSC down at 65 ℃ subsequently in the solution of being made up of the smart DNA of the frog of 50% methane amide, 5 * SSC (750mM NaCl, 75mM trisodium citrate), 50mM sodium phosphate (pH7.6), 5 * Denhardt solution, 10% T 500 and 20g/ml sex change, shearing.
" function equivalent fragment " is meant the nucleotide sequence with promoter active fragment, compares it with homing sequence and has basic identical or higher ratio promoter activity.
" basically consistent " is meant and shows at least 50%, preferred 60%, more preferably 70%, more preferably 80%, more preferably 90%, especially preferred 95% the ratio promoter activity of homing sequence than promoter activity.
" fragment " is meant by embodiment A), B) or the partial sequence of the nucleic acid C) described with promoter activity.This fragment preferably has more than 10 but more preferably more than 12,15,30,50 or preferred especially more than the continuous Nucleotide among 150 the nucleic acid sequence SEQ .ID.NO.1.
Especially preferably use nucleic acid sequence SEQ .ID.NO.1 as promotor, promptly be used for gene transcription.
Genbank clauses and subclauses AP005283 has described SEQ.ID.NO.1 under the situation of undeclared function.Therefore, the invention further relates to nucleotide sequence of the present invention new, that have promoter activity.
The present invention is specifically related to have the nucleic acid of promoter activity, and it comprises:
A) nucleic acid sequence SEQ .ID.NO.1, or
B) derive and on nucleic acid level, have a sequence of at least 90% identity from sequence SEQ.ID.NO.1 by nucleotide substitution, insertion or disappearance with sequence SEQ.ID.NO.1, or
C) nucleotide sequence of under stringent condition, hybridizing with nucleic acid sequence SEQ .ID.NO.1, or
D) A), B) or the function equivalent fragment of sequence C), its precondition is to get rid of the nucleic acid with sequence SEQ.ID.NO.1.
In addition, can known way own, prepare above-mentioned all nucleic acid by carry out chemosynthesis from nucleotide structure unit, for example the fragment condensation by double-helical independent overlapping complementary nucleic acid structure unit with promoter activity.For example, carry out the chemosynthesis of oligonucleotide in known manner by phosphoramidite method (Voet, Voet, the 2nd edition, WileyPress New York, 896-897 page or leaf).People such as Sambrook (1989), Molecular cloning:A laboratory manual has described the Klenow fragment of using archaeal dna polymerase and ligation and the synthetic oligonucleotide is added and will mend flat breach and conventional cloning process among the ColdSpring Harbor Laboratory Press.
The invention further relates to and express unitary purposes, described expression unit comprises a kind of the have nucleic acid of the present invention of promoter activity and the nucleotide sequence that additional functionality connects, and this nucleotide sequence is guaranteed the just genetic expression of translation of Yeast Nucleic Acid.
According to the present invention, express the unit and be meant nucleic acid with expression activity, promptly be connected the nucleic acid of expressing to regulate with treating express nucleic acid or gene function, wherein said expression promptly refers to this nucleic acid or this gene transcription and translation.
Thus, " functional connection " be meant that for example a kind of the present invention expresses the nucleotide sequence of unit and pending transgene expression and other regulatory element (as terminator) under the felicity condition and brings into play the series arrangement that the mode of its function is carried out with each regulatory element in the transgene expression of nucleotide sequence.Direct connection on the chemical sense is not an imperative for this.Genetic Control sequence for example enhancer sequence can be carried out its function to target sequence on than distant positions, very different dna molecular.Preferably a kind of like this arrangement, promptly the nucleotide sequence of pending transgene expression be positioned at the present invention express unit sequence after (promptly at 3 ' end) so that two sequences are together covalently bound.In this case, the distance between the nucleotide sequence of expression unit sequence and pending transgene expression is preferably less than 200 base pairs, especially preferably less than 100 base pairs, very particularly preferably less than 50 base pairs.
According to the present invention, " expression activity " is meant the proteinic amount that is produced by the expression unit in specified time, promptly express speed.
According to the present invention, " than expression activity " is meant for each and expresses the proteinic amount that the unit is produced by the expression unit in specified time.
Therefore, under the situation of " expression activity of influence " that relate to the gene of comparing with wild-type or expression speed, compare proteinic production with wild-type and be affected, wherein under this mode, do not have described proteinic production in the wild-type.
Therefore, under the situation of " expression activity of change " that relate to the gene of comparing with wild-type or expression speed, compare the protein mass of in specified time, producing with wild-type and changed.
Thus, " change " preferably refer to increase or reduce.
For example, this can by increase or reduce the unitary specific activity of endogenous expression (for example by make this expressions unit sudden change by stimulation or suppress this expression unit) carry out.
In addition, for example express the unit or have increase and regulate the increase that expression of gene in the microorganism can realize expression activity or express speed than the expression unit of expression activity by the present invention, wherein said gene for expressing the unit for allogenic.
Express the unit or have increase by the present invention and express the unit than the present invention of expression activity the adjusting of genetic expression in the microorganism is preferably realized in the following manner:
One or more the present invention that have the ratio expression activity of change under felicity condition are expressed the unit to import in the microbial genome, so that express the expression of carrying out one or more native genes under the unitary control in the present invention in the ratio expression activity that has change under the felicity condition who is imported; Or
One or more genes are imported in microbial genome, so that be to have under the felicity condition expression of carrying out one or more quiding genes under the unitary control of the endogenous expression of the present invention of ratio expression activity of change; Or
One or more nucleic acid constructs are imported in microorganisms, the present invention that described nucleic acid construct is contained in the ratio expression activity that has change under the felicity condition express unit and functional connection one or more treat express nucleic acid.
The present invention express the unit comprise the invention described above nucleic acid with promoter activity with additionally with the functional nucleotide sequence of guaranteeing the Yeast Nucleic Acid translation that is connected.
In a preferred embodiment, expression of the present invention unit comprises:
E) nucleic acid sequence SEQ .ID.NO.2, or
F) derive and on nucleic acid level, have a sequence of at least 90% identity from sequence SEQ.ID.NO.2 by nucleotide substitution, insertion or disappearance with sequence SEQ.ID.NO.2, or
G) nucleotide sequence of under stringent condition, hybridizing with nucleic acid sequence SEQ .ID.NO.2, or
H) F E)) or G) the function equivalent fragment of sequence.
Nucleic acid sequence SEQ .ID.NO.2 representative is from the permease (P of the supposition of Corynebacterium glutamicum
1-34) nucleotide sequence.SEQ.ID.NO.2 expresses unitary sequence corresponding to wild-type.
The invention still further relates to the expression unit, it comprises by nucleotide substitution, insertion or disappearance derives and have the sequence of at least 90% identity with sequence SEQ.ID.NO.2 on nucleic acid level from sequence SEQ.ID.NO.2.
Expressing other natural example of unitary the present invention for the present invention for example can find from the known multiple biology of genome sequence with comparalive ease by the nucleotide sequence in the database and above-mentioned sequence SEQ ID NO:2 are carried out identity.
Begin easily to obtain expressing unitary artificial sequence of the present invention from sequence SEQID NO:2 by artificial variation and sudden change (for example by nucleotide substitution, insertion or disappearance).
Therefore, the nucleotide sequence that has at least 90% identity with sequence SEQ ID NO:2 is meant the nucleotide sequence that relatively shows at least 90% identity as itself and sequence SEQ ID NO:2 when (particularly be according to parameter setting above having said procedure algorithm carry out).
Particularly preferred expression unit shows with nucleic acid sequence SEQ .ID.NO.2 to have 91% identity, is more preferably 92%, 93%, 94%, 95%, 96%, 97%, 98% identity, is preferably 99% identity especially.
In addition, can also begin, particularly begin easily from the multiple biology of genome sequence the unknown, to obtain expressing unitary other natural example from above-mentioned nucleotide sequence by known hybridization technique itself from sequence SEQ.ID NO:2.
Therefore, another aspect of the present invention relates to Expression element, and it is included in the nucleotide sequence of hybridizing with nucleic acid sequence SEQ .ID.No.2 under the stringent condition.This nucleotide sequence comprises at least 10, more preferably more than 12,15,30,50 or especially preferably more than 150 Nucleotide.
" hybridization " is meant polynucleotide or oligonucleotide and actual complementary sequence bonded ability under stringent condition, and do not carry out non-specific binding under these conditions between the incomplementarity mating partner.Thus, sequence should be preferably the 90-100% complementation.The characteristic of specificity bonded complementary sequence can be used for the primer combination among Northern for example or Southern engram technology or PCR or the RT-PCR each other.
According to the present invention, under stringent condition, hybridize.This kind hybridization conditions is described in for example Sambrook, J., Fritsch, E.F., Maniatis, T. exist: Molecular Cloning (ALaboratory Manual), second edition, Cold Spring Harbor Laboratory Press, 1989,9.31-9.57 page or leaf or Current Protocols in Molecular Biology, JohnWiley﹠amp; Sons, N.Y. (1989), 6.3.1-6.3.6.
Stringent hybridization condition specifically is meant: in 42 ℃ of overnight incubation, wash filter membrane with 0.1 * SSC down at 65 ℃ subsequently in the solution of being made up of the smart DNA of the frog of 50% methane amide, 5 * SSC (750mM NaCl, 75mM trisodium citrate), 50mM sodium phosphate (pH7.6), 5 * Denhardt solution, 10% T 500 and 20g/ml sex change, shearing.
Nucleotide sequence of the present invention can also produce probe and the primer that is used at other cell type and microorganism evaluation and/or clone's homologous sequence.This class probe and primer be generally comprised within the stringent condition with the sense strand of nucleotide sequence of the present invention or corresponding antisense strand at least about 12, preferably at least about 25, the nucleotides sequence column region of about 45,50 or 75 continuous nucleotides hybridization for example.
According to the present invention, also comprise and contain so-called silent mutation or compare with specifically mentioned sequence according to concrete primeval life or host living beings codon and select nucleotide sequence and the natural variant (as splice variant or allelic variant) that exists thereof modified.
" function equivalent fragment " be meant have basic identical or with homing sequence than the expression unit segment of height ratio expression activity.
" basically consistent " is meant and presents at least 50%, preferred 60%, more preferably 70%, more preferably 80%, more preferably 90%, especially preferred 95% the ratio expression activity of homing sequence than expression activity.
" fragment " is meant by embodiment E), F) or the unitary partial sequence of expression G) described.These fragments preferably have more than 10 but more preferably more than 12,15,30,50 or the preferred especially continuous Nucleotide more than 150 nucleic acid sequence SEQ .ID.NO.1.
Especially preferably use nucleic acid sequence SEQ .ID.NO.2 as expressing the unit, promptly be used for expression of gene.
The invention further relates to new expression of the present invention unit.
Particularly, the present invention relates to comprise nucleic acid of the present invention and the other expression unit of guaranteeing the nucleotide sequence that Yeast Nucleic Acid is translated with functional connection with promoter activity.
The present invention especially preferably relates to the expression unit, and it comprises:
E) nucleic acid sequence SEQ .ID.NO.2, or
F) derive and on nucleic acid level, have a sequence of at least 90% identity from sequence SEQ.ID.NO.2 by nucleotide substitution, insertion or disappearance with sequence SEQ.ID.NO.2, or
G) nucleotide sequence of under stringent condition, hybridizing with nucleic acid sequence SEQ .ID.NO.2,
H) E), F) or G) the function equivalent fragment of sequence, its precondition is to get rid of the nucleic acid with sequence SEQ.ID.NO.2.
The present invention expresses the unit and comprises one or more following genetic elements: negative 10 (" 10 ") sequence, negative 35 (" 35 ") sequence, transcription sequence starting point, enhanser zone and operator gene zone.
The preferably excellent bacillus species of these genetic elements are special, and especially Corynebacterium glutamicum is special.
In addition, can known way own, prepare above-mentioned Expression element by carrying out chemosynthesis, for example the fragment condensation by double-helical independent overlapping complementary nucleic acid structure unit from nucleotide structure unit.For example, carry out the chemosynthesis of oligonucleotide in known manner by phosphoramidite method (Voet, Voet, the 2nd edition, Wiley Press New York, 896-897 page or leaf).People such as Sambrook (1989), Molecular cloning:A laboratory manual has described the Klenow fragment of using archaeal dna polymerase and ligation and the synthetic oligonucleotide is added and will mend flat breach and conventional cloning process among the Cold Spring HarborLaboratory Press.
The method and the technology that are used for this patent invention are to be subjected to the technician of microbial technique and recombinant DNA technology training known.Be used for the culturing bacterium cell, with isolated DNA molecule insert host cell and with institute's isolated nucleic acid molecule separate, the method and the technology of clone and order-checking etc. be the example of this type of technology and method.These methods that many normative documents have come Source Description:
People such as Davis, Basic Methods In Molecular Biology (1986); J.H.Miller.Experiments in Molecular Genetics, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York (1972); J.H.Miller, A Short Course inBacterial Genetics, Cold Spring Harbor Laboratory Press, Cold SpringHarbor, New York (1992); M.Singer and P.Berg, Genes ﹠amp; Genomes, University Science Books, Mill Valley, California (1991); J.Sambrook, E.F.Fritsch and T.Maniatis, Molecular Cloning:A Laboratory Manual, second edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York (1989); People such as P.B.Kaufmann, Handbook of Molecular and Cellular Methodsin Biology and Medicine, CRC Press, Boca Raton, Florida (1995); Methodsin Plant Molecular Biology and Biotechnology, B.R.Glick and J.E.Thompson write, CRC Press, Boca Raton, Florida (1993) and P.F. Smith-Keary, Molecular Genetics of Escherichia coli, The Guilford Press, New York, NY (1989).
The all nucleic acid molecule of the present invention are preferably the form of isolated nucleic acid molecule." isolating " nucleic acid molecule is isolating from existing other nucleic acid molecule of nucleic acid natural origin, and it does not also have other cell material and substratum (if it is by recombinant technology preparation) basically or does not have precursor or other chemical (if it is chemosynthesis) basically.
In addition, the present invention includes and specifically described nucleotide sequence complementary nucleic acid molecule or its part.
For example, as described below, promotor of the present invention and/or expression unit can be particularly advantageous for preparing in the improving one's methods of biosynthetic products by fermentation.
Particularly, promotor of the present invention and/or express unitary advantage and be that it passes through stress-inducing in microorganism.Can control this stress-inducing especially to increase desirable gene transcription/ceneme speed by suitable control fermenting process.Particularly, in the generation of L-Methionin, this is coerced mutually and reaches very early, thus in this case, can realize very early desirable gene increase transcribe/express speed.Nucleic acid of the present invention with promoter activity can be used for changing gene transcription speed in (promptly improve or reduce) or influence and the microorganism that wild-type is compared.
The present invention expresses the unit and can be used for changing expression of gene speed in (promptly improve or reduce) or influence and the microorganism that wild-type is compared.
Have the nucleic acid of the present invention of promoter activity and the present invention express the unit also can be used for regulating and strengthen in the microorganism (especially in excellent bacillus species) multiple biosynthetic products for example fine chemicals, protein, be in particular amino acid whose production.
Therefore, the present invention relates to change in the following manner or influence and microorganism that wild-type is compared in the method for genetic transcription speed:
A) compare with wild-type, change the ratio promoter activity that has the endogenous nucleic acid of the present invention of promoter activity in the microorganism, described endogenous nucleic acid is regulated transcribing of native gene, or
B) nucleic acid of the present invention by having promoter activity or regulate gene transcription in the microorganism by having according to the nucleic acid of the ratio promoter activity of embodiment change a), wherein said gene is allogenic for the nucleic acid with promoter activity.
According to embodiment a), can by change that ratio promoter activity in (promptly increase or reduce) microorganism change or influence and microorganism that wild-type is compared in genetic transcription speed.For example, this can be undertaken by the nucleotide sequence orthomutation of the present invention (promptly the orientation by Nucleotide substitutes, lacks or inserts) with promoter activity.Can realize the increase or the reduction of promoter activity by the Nucleotide in the displacement rna polymerase holoenzyme binding site (those skilled in the art also is called-10 districts and-35 districts).In addition, also can realize by dwindling or enlarging described rna polymerase holoenzyme binding site distance (by disappearance Nucleotide or insertion Nucleotide) each other.In addition, also can be placed on the space adjacent area (so that after being attached to promoter sequence, these instrumentalities weaken or strengthen the combination and the transcriptional activity of rna polymerase holoenzyme) of rna polymerase holoenzyme binding site or place it in and be in new adjusting and influence realization by the binding site (those skilled in the art also is called operator gene) that will regulate protein (those skilled in the art also is called repressor and activator).
Compare expression activity
About " than promoter activity ", increase of comparing with wild-type or reduction are meant increase or the reduction of comparing (promptly for example comparing with SEQ.ID.NO.1) specific activity with the nucleic acid of the present invention with promoter activity of wild-type.
According to embodiment b), compare the change or the influence of genetic transcription speed in the microorganism with wild-type, nucleic acid of the present invention that can be by having promoter activity or undertaken by having the genetic transcription of regulating in the microorganism according to the nucleic acid of the ratio promoter activity of embodiment change a), wherein said gene is allogenic for the nucleic acid with promoter activity.
This can preferably realize in the following manner:
B1) one or more of the ratio promoter activity nucleic acid of the present invention that will have promoter activity, have a change under felicity condition import in microbial genome, so that have promoter activity, carry out transcribing of one or more native genes under institute's nucleic acid that imports of the ratio promoter activity that has change under the felicity condition is controlled; Or
B2) one or more genes are imported in the microbial genome, so that have promoter activity, under the endogenous nucleic acid control of the present invention of the ratio promoter activity that has change under the felicity condition, carrying out transcribing of one or more quiding genes; Or
B3) one or more nucleic acid constructs are imported in microorganisms, wherein said nucleic acid construct comprises and has promoter activity, has the nucleic acid of the present invention of ratio promoter activity of change and one or more nucleic acid to be transcribed of functional connection under felicity condition.
Therefore, may change the transcription rate of (promptly improve or reduce) wild-type native gene in the following manner:
According to embodiment b1), one or more of the ratio promoter activity nucleic acid of the present invention that will have promoter activity, have a change under felicity condition import in microbial genome, so that have promoter activity, carry out transcribing of one or more native genes under institute's nucleic acid that imports of the ratio promoter activity that has change under the felicity condition is controlled; Or
According to embodiment b2), one or more foreign genes are imported in the microbial genome, so that have promoter activity, under the endogenous nucleic acid control of the present invention of the ratio promoter activity that has change under the felicity condition, carrying out transcribing of one or more native genes that import; Or
According to embodiment b3), one or more nucleic acid constructs are imported in microorganisms, and wherein said nucleic acid construct comprises and has promoter activity, has the nucleic acid of the present invention of ratio promoter activity of change and one or more endogenous nucleic acids to be transcribed of functional connection under felicity condition.
Therefore, also can influence the transcription rate of the foreign gene of comparing with wild-type in the following manner:
According to embodiment b2), one or more native genes are imported in the microbial genome, so that have promoter activity, under the endogenous nucleic acid control of the present invention of the ratio promoter activity that has change under the felicity condition, carrying out transcribing of one or more native genes that import; Or
According to embodiment b3), one or more nucleic acid constructs are imported in microorganisms, and wherein said nucleic acid construct comprises and has promoter activity, has the nucleic acid of the present invention of ratio promoter activity of change and one or more endogenous nucleic acids to be transcribed of functional connection under felicity condition.
In addition, can be by gene integration be carried out according to embodiment b2 to coding region or non-coding region) gene insert.Preferably be inserted in the non-coding region.
In addition, can carry out according to embodiment b3 on karyomit(e) or outside the karyomit(e)) the insertion of nucleic acid construct.Preferably nucleic acid construct being carried out karyomit(e) inserts." karyomit(e) " is integrated is that exogenous dna fragment is inserted in the karyomit(e) of host cell.This term also is used for the homologous recombination between the appropriate area on exogenous dna fragment and the host cell chromosome.
At embodiment b) in, the nucleic acid of the present invention that has according to the ratio promoter activity of embodiment change a) preferably also used.At embodiment b) in, as implement scheme a) described in these nucleic acid can in microorganism, exist or prepare or with it with in the isolating form importing microorganism.
" endogenous " is meant the genetic information that is present in the wild type gene group, as gene.
" external source " is meant the genetic information that is not present in the wild type gene group, as gene.
The term " gene " that relates to the transcriptional regulatory of being undertaken by the nucleic acid of the present invention with promoter activity preferably is meant the nucleic acid that comprises zone to be transcribed (promptly for example regulating the zone of translation) and coding region and other regulatory element under suitable situation (for example terminator).
Relate to term " gene " of expressing the expression adjusting of carrying out the unit as described below, preferably be meant the nucleic acid that comprises coding region and other regulatory element under suitable situation (for example terminator) by the present invention.
" coding region " is meant the nucleotide sequence of coded protein.
Relate to the nucleic acid with promoter activity and " heterology " of gene, be meant that the gene that uses do not transcribe under the adjusting of the nucleic acid of the present invention with promoter activity, have the function combinations that starts active nucleic acid of the present invention and specific gene in wild-type but produced in wild-type non-existent new functional connection and in wild-type, do not existed.
Relate to " heterology " of expressing unit and gene, be meant the gene that uses express under the unitary adjusting in the present invention and in wild-type, do not express with promoter activity, but produced in wild-type non-existent new functional connection and in wild-type, do not existed the present invention to express the function combinations of unit and specific gene.
In a preferred embodiment, the invention further relates to and compare the method that improves or influence gene transcription speed in the microorganism in the following manner with wild-type:
Ah) compare with wild-type, increase the ratio promoter activity of endogenous nucleic acid of the present invention in microorganism with promoter activity, described endogenous nucleic acid is regulated transcribing of native gene, or
Bh) nucleic acid of the present invention by having promoter activity or regulate gene transcription in the microorganism by having according to the nucleic acid of the ratio promoter activity of embodiment increase a), wherein said gene is allogenic for the nucleic acid with promoter activity.
Nucleic acid of the present invention by having promoter activity or by having according to embodiment ah) the adjusting that genetic transcription in the microorganism is carried out of the nucleic acid of the present invention of ratio promoter activity of increase preferably realize in the following manner:
Bh1) one or more of the ratio promoter activity nucleic acid of the present invention that will have promoter activity, have an increase under felicity condition import in microbial genome, so that have promoter activity, carry out transcribing of one or more native genes under institute's nucleic acid that imports of the ratio promoter activity that has increase under the felicity condition is controlled; Or
Bh2) one or more genes are imported in the microbial genome, so that have promoter activity, under the endogenous nucleic acid control of the present invention of the ratio promoter activity that has increase under the felicity condition, carrying out transcribing of one or more quiding genes; Or
Bh3) one or more nucleic acid constructs are imported in microorganisms, wherein said nucleic acid construct comprises and has promoter activity, has the nucleic acid of the present invention of ratio promoter activity of increase and one or more nucleic acid to be transcribed of functional connection under felicity condition.
In a preferred embodiment, the invention further relates to and compare the method that reduces genetic transcription speed in the microorganism in the following manner with wild-type:
Ar) compare with wild-type, reduce the ratio promoter activity of endogenous nucleic acid of the present invention in microorganism with promoter activity, described endogenous nucleic acid is regulated transcribing of native gene, or
Br) nucleic acid that will have according to the ratio promoter activity of embodiment reduction a) imports in the microbial genome, so that carry out transcribing of native gene under the nucleic acid control of the promoter activity with reduction that is imported.
The invention further relates to and compare the method that changes or influence genetic expression speed in the microorganism in the following manner with wild-type:
C) compare with wild-type, change the ratio expression activity of the present invention endogenous expression unit in microorganism, described endogenous expression unit is regulated native gene and is expressed, or
D) express the unit by the present invention or by having according to embodiment c) the present invention of ratio expression activity of change express the unit genetic expression in the microorganism regulated, wherein said gene is allogenic for expressing the unit.
According to embodiment c), can compare change with wild-type or influence expression of gene speed in the microorganism by the ratio expression activity in change (promptly increase or reduce) microorganism is next.For example, the orthomutation of the nucleotide sequence of the present invention that this can be by having promoter activity (promptly the orientation by Nucleotide substitute, disappearance or insert) carry out.For example, prolong distance between Shine-Dalgarno sequence and the translation initiation codon and cause variation usually, weaken than expression activity otherwise strengthen than expression activity.Also can shorten or prolong Shine-Dalgarno district (ribosome bind site) sequence by nucleotide deletion or insertion than the change of expression activity realizes to the distance of translation initiation codon.But also can be by realizing so that the mode that strengthens or weaken with the homology of complementary 3 ' end 16S rRNA changes the Shine-Dalgarno region sequence.
With regard to " than expression activity ", compare with wild-type to increase or to reduce and be meant with the present invention of wild-type and express increase or the reduction that (promptly for example comparing with SEQ.ID.NO.2) specific activity is compared in the unit.
According to embodiment d), can by the present invention express the unit or by having according to embodiment c) the present invention of ratio expression activity of change express the adjusting of unit to genetic expression in the microorganism, thereby compare change with wild-type or influence expression of gene speed in the microorganism, wherein said gene is allogenic for expressing the unit.
This can preferably realize in the following manner:
D1) one or more the present invention that will have the ratio expression activity of change under suitable situation express in the genome of unit importing microorganism, so that under import expression unit control, carry out the expression of one or more native genes, or
D2) one or more genes are imported in the genome of microorganisms, so that be to have under the felicity condition expression of carrying out one or more quiding genes under the unitary control of the endogenous expression of the present invention of ratio expression activity of change, or
D3) one or more nucleic acid constructs are imported in microorganisms, the present invention that described nucleic acid construct is contained in the ratio expression activity that has change under the felicity condition express unit and functional connection one or more treat express nucleic acid.
Therefore, can change the expression speed of (promptly improve or reduce) wild-type native gene in the following manner:
According to embodiment d1), one or more the present invention that will have the ratio expression activity of change under suitable situation express the unit and import in the genome of microorganism, so that under import expression unit control, carry out the expression of one or more native genes, or
According to embodiment d2), one or more genes are imported in the genome of microorganisms, so that be to have under the felicity condition expression of carrying out one or more quiding genes under the unitary control of the endogenous expression of the present invention of ratio expression activity of change, or
According to embodiment d3), one or more nucleic acid constructs are imported in microorganisms, the present invention that described nucleic acid construct is contained in the ratio expression activity that has change under the felicity condition express unit and functional connection one or more treat express nucleic acid.
Therefore, can also compare with wild-type and influence the expression of native gene speed in the following manner:
According to embodiment d2), one or more native genes are imported in the genome of microorganisms, so that be to have under the felicity condition expression of carrying out one or more quiding genes under the unitary control of the endogenous expression of the present invention of ratio expression activity of change, or
According to embodiment d3), one or more nucleic acid constructs are imported in microorganisms, described nucleic acid construct is contained in one or more exogenous nucleic acids to be expressed that the present invention of the ratio expression activity that has change under the felicity condition expresses unit and functional connection.
In addition, can be by gene integration be carried out according to embodiment d2 to coding region or non-coding region) gene insert.Preferably be inserted in the non-coding region.
In addition, can carry out according to embodiment d3 on karyomit(e) or outside the karyomit(e)) the insertion of nucleic acid construct.The karyomit(e) of preferred nucleic acid construct inserts.
Hereinafter, nucleic acid construct is also referred to as expression cassette.
At embodiment d) in, preferably also use to have according to embodiment c) the present invention of ratio expression activity of change express the unit.At embodiment d) in, as implementing scheme c) described in these express unit can in microorganism, exist or prepare or with it with in the isolating form importing microorganism.
In a preferred embodiment, the invention further relates to and compare the method that improves or influence genetic expression speed in the microorganism in the following manner with wild-type:
Ch) compare with wild-type, increase the ratio expression activity of the present invention endogenous expression unit in microorganism, the expression of native gene is regulated in described expression unit, or
Dh) express the unit by the present invention or by having according to embodiment c) the expression unit of ratio expression activity of increase expression of gene in the microorganism is regulated, wherein said gene is allogenic for expressing the unit.
By the present invention express the unit or by having according to embodiment c) the adjusting that genetic expression in the microorganism is carried out of the expression unit of ratio expression activity of increase preferably realize in the following manner:
Dh1) one or more the present invention that will have the ratio expression activity of increase under suitable situation express in the genome of unit importing microorganism, so that be to have under the suitable situation increase the ratio expression activity import and express the expression of carrying out one or more native genes under the unit control, or
Dh2) one or more genes are imported in the genome of microorganisms, so that be to have under the felicity condition expression of carrying out one or more quiding genes under the unitary control of the endogenous expression of the present invention of ratio expression activity of increase, or
Dh3) one or more nucleic acid constructs are imported in microorganisms, the present invention that described nucleic acid construct is contained in the ratio expression activity that has raising under the felicity condition express unit and functional connection one or more treat express nucleic acid.
The invention further relates to and compare the method that reduces genetic expression speed in the microorganism in the following manner with wild-type:
Cr) compare with wild-type, reduce the ratio expression activity of the present invention endogenous expression unit in microorganism, the expression of native gene is regulated in described expression unit, or
Dr) will have according to embodiment cr) the expression unit of ratio expression activity of reduction import in the microbial genome, so that under the expression unit control of the expression activity that is imported, carry out the expression of native gene with reduction.
Be used for changing or influencing microorganism genetic transcription speed and/or express in the preferred embodiment of the invention described above method of speed, these genes are selected from the proteinic nucleic acid of coding from the fine chemicals biosynthetic pathway, wherein the optional regulatory element that further comprises of these genes.
Be used for changing or influencing microorganism genetic transcription speed and/or express in the particularly preferred embodiment of the invention described above method of speed, these genes are selected from following nucleic acid: coding is from the proteinic nucleic acid of raw albumen and non-raw albumen amino acid biosynthetic pathway, coding is from the proteinic nucleic acid of Nucleotide and nucleosides biosynthetic pathway, coding is from the proteinic nucleic acid of organic acid biosynthetic pathway, coding is from the proteinic nucleic acid of lipid and fatty acid biosynthetic pathway, coding is from the proteinic nucleic acid of glycol biosynthetic pathway, coding is from the proteinic nucleic acid of carbohydrate biosynthetic pathway, coding is from the proteinic nucleic acid of aromatic compound biosynthetic pathway, coding is from the proteinic nucleic acid of VITAMIN biosynthetic pathway, coding is from the proteinic nucleic acid of cofactor biosynthetic pathway and the coding proteinic nucleic acid from the enzyme biosynthetic pathway, and wherein these genes (if suitable) further comprise regulatory element.
In an especially preferred embodiment, protein from amino acid biosynthetic pathway is selected from: E.C. 2.7.2.4., aspartate-semialdehyde dehydrogenase, diaminopimelate dehydrogenase, diaminapimelate decarboxylase, the dihydrodipicolinic acid synthase, the dihydrodipicolinate reductase, glyceraldehyde-3-phosphate dehydrogenase, the glycerol 3-phosphate acid kinase, pyruvate carboxylase, triosephosphate isomerase, transcriptional LuxR, transcriptional LysR1, transcriptional LysR2, oxysuccinic acid-quinone oxidoreductase, glucose-6-phosphate dehydrogenase (G6PD), 6-Phosphogluconic dehydrogenase, transketolase, transaldolase, homoserine O-Transacetylase, cystathionine Gamma synthase, the cystathionine beta lyase, serine hydroxymethylase, the O-acetylhomoserine sulfhydrylase, Methylene tetrahydrofolate reductase, phosphoserine aminotransferase, phosphoserine phosphatase, serine acetyltransferase, homoserine dehydrogenase, homoserine kinase, threonine synthase, Threonine is exported sub-carrier (exporter carrier), threonine dehydra(ta)se, pyruvic oxidase, Methionin output, the vitamin H ligase enzyme, cysteine synthase I, cysteine synthase II, actimide dependent form methionine synthases, non-actimide dependent form methionine synthases activity, sulfate adenylyl transferase subunit 1 and 2, adenosine phosphate-phosphinylidyne sulfate reduction enzyme, ferredoxin-sulfite reductase, ferredoxin NADP reductase enzyme, 3-phosphoglyceric acid dehydroenase, the RXA00655 instrumentality, the RXN2910 instrumentality, Arginyl-tRNA synthetase, Phosphoenolpyruvate carboxylase, Threonine is discharged protein (efflux protein), serine hydroxymethylase, fructose-1, the protein RXA077 of sulfate reduction, the protein RXA248 of sulfate reduction, the protein RXA247 of sulfate reduction, protein OpcA, 1-Phosphofructokinase and fructose-1, 6-diphosphate kinases.
Be respectively microbe-derived protein sequence and nucleotide sequence from the above-mentioned proteinic preferred protein of amino acid biosynthetic pathway and these proteinic nucleic acid of encoding, preferably from Corynebacterium or brevibacterium sp bacterium, preferably from excellent bacillus, especially preferably from Corynebacterium glutamicum.
List in the table 1 from these the proteinic special preferred protein sequences of amino acid biosynthetic pathway and example, its reference and the title in reference thereof of these proteinic corresponding nucleic sequences of encoding:
Table 1
Protein | The nucleic acid of coded protein | Reference | SEQ.ID. NO. in reference |
E.C. 2.7.2.4. | Ask or lysC | EP1108790 | DNA:281 protein: 3781 |
Aspartate-semialdehyde dehydrogenase | asd | EP1108790 | DNA:331 protein: 3831 |
The dihydrodipicolinic acid synthase | dapA | WO0100843 | DNA:55 protein: 56 |
The dihydrodipicolinate reductase | dapB | WO0100843 | DNA:35 protein: 36 |
Meso diaminopimelic acid D-desaturase | ddh | EP1108790 | DNA:3494 protein: 6944 |
Diamino-pyridine formic acid decarboxylase | lysA | EP1108790 | DNA:3451 protein: 6951 |
Methionin output | lysE | EP1108790 | DNA:3455 protein: 6955 |
Arginyl-tRNA synthetase | argS | EP1108790 | DNA:3450 protein: 6950 |
Glucose-6-phosphate dehydrogenase (G6PD) | ZWf | WO0100844 | DNA:243 protein: 244 |
Glyceraldehyde-3-phosphate dehydrogenase | gap | WO0100844 | DNA:187 protein: 188 |
The glycerol 3-phosphate acid kinase | pgk | WO0100844 | DNA:69 protein: 70 |
Pyruvate carboxylase | pycA | EP1108790 | DNA:765 protein: 4265 |
Triose-phosphate isomerase | tpi | WO0100844 | DNA:61 protein: 62 |
The vitamin H ligase enzyme | birA | EP1108790 | DNA:786 protein: 4286 |
The PEP carboxylase | pck | EP1108790 | DNA:3470 protein: 6970 |
Homoserine kinase | thrB | WO0100843 | DNA:173 protein: 174 |
Threonine synthase | thrC | WO0100843 | DNA:175 protein: 176 |
Threonine is exported sub-carrier | thrE | WO0251231 | DNA:41 protein: 42 |
Threonine is discharged protein | RXA2390 | WO0100843 | DNA:7 protein: 8 |
Threonine dehydra(ta)se | ilvA | EP1108790 | DNA:2328 protein: 5828 |
Homoserine O-Transacetylase | metA | EP1108790 | DNA:727 protein: 4227 |
Cystathionine Gamma synthase | metB | EP1108790 | DNA:3491 protein: 6991 |
The cystathionine beta lyase | metC | EP1108790 | DNA:2535 protein: 6035 |
Actimide dependent form methionine synthases | metH | EP1108790 | DNA:1663 protein: 5163 |
The O-acetylhomoserine sulfhydrylase | metY | EP1108790 | DNA:726 protein: 4226 |
Methylene tetrahydrofolate reductase | metF | EP1108790 | DNA:2379 protein: 5879 |
The D-3-phosphoglycerate dehydrogenase | serA | EP1108790 | DNA:1415 protein: 4915 |
Phosphoserine phosphatase 1 | serB | WO0100843 | DNA:153 protein: 154 |
Phosphoserine phosphatase 2 | serB | EP1108790 | DNA:467 protein: 3967 |
Phosphoserine phosphatase 3 | serB | EP1108790 | DNA:334 protein: 3834 |
Phosphoserine aminotransferase | serC | WO0100843 | DNA:151 protein: 152 |
Serine acetyltransferase | cysE | WO0100843 | DNA:243 protein: 244 |
Cysteine synthase I | cysK | EP1108790 | DNA:2817 protein: 6317 |
Cysteine synthase II | CysM | EP1108790 | DNA:2338 protein: 5838 |
Homoserine dehydrogenase | hom | EP1108790 | DNA:3452 protein: 6952 |
Non-actimide dependent form methionine synthases | metE | WO0100843 | DNA:755 protein: 756 |
Serine hydroxymethylase | glyA | WO0100843 | DNA:143 protein: 144 |
Protein in the sulfate reduction | RXA247 | EP1108790 | DNA:3089 protein: 6589 |
Protein in the sulfate reduction | RXA248 | EP1108790 | DNA:3090 protein: 6590 |
Sulfate adenylyl transferase subunit 1 | CysN | EP1108790 | DNA:3092 protein: 6592 |
Sulfate adenylyl transferase subunit 2 | CysD | EP1108790 | DNA:3093 protein: 6593 |
Adenosine phosphate-phosphinylidyne sulfate reduction enzyme | CysH | WO02729029 | DNA:7 protein: 8 |
Ferredoxin-sulfite reductase | RXA073 | WO0100842 | DNA:329 protein: 330 |
Ferredoxin NADP-reductase enzyme | RXA076 | WO0100843 | DNA:79 protein: 80 |
Transcriptional LuxR | luxR | WO0100842 | DNA:297 protein: 298 |
Transcriptional LysR1 | lysR1 | EP1108790 | DNA:676 protein: 4176 |
Transcriptional LysR2 | lysR2 | EP1108790 | DNA:3228 protein: 6728 |
Transcriptional LysR3 | lysR3 | EP1108790 | DNA:2200 protein: 5700 |
Oxysuccinic acid-quinone oxidoreductase | mqo | WO0100844 | DNA:569 protein: 570 |
Transketolase | RXA2739 | EP1108790 | DNA:1740 protein: 5240 |
Transaldolase | RXA2738 | WO0100844 | DNA:245 protein: 246 |
OpcA | opcA | WO0100804 | DNA:79 protein: 80 |
1-Phosphofructokinase 1 | pfk1 | WO0100844 | DNA:55 protein: 56 |
1-Phosphofructokinase 2 | pfk2 | WO0100844 | DNA:57 protein: 58 |
Fructose-1, 6-diphosphate kinases 1 | 6-pfk1 | EP1108790 | DNA:1383 protein: 4883 |
Fructose-1, 6-diphosphate kinases 2 | 6-pfk2 | DE10112992 | DNA:1 protein: 2 |
Fructose-1 1 | fbr1 | EP1108790 | DNA:1136 protein: 4636 |
Pyruvic oxidase | poxB | WO0100844 | DNA:85 protein: 86 |
The RXA00655 instrumentality | RXA655 | US2003162267.2 | DNA:1 protein: 2 |
The RXN02910 instrumentality | RXN2910 | US2003162267.2 | DNA:5 protein: 6 |
The 6-phosphogluconolactonase | RXA2735 | WO0100844 | DNA:1 protein: 2 |
Particularly preferred other example from the protein sequence of amino acid biosynthetic pathway and this proteinic corresponding nucleic sequence of encoding is a fructose-1,6-diphosphatase 2 (being also referred to as fbr2) sequence (SEQ.ID.NO.8) and encoding fructose-1, the corresponding nucleic sequence of 6-diphosphatase 2 (SEQ.ID.NO.7).
Particularly preferred other example from the protein sequence of amino acid biosynthetic pathway and this proteinic corresponding nucleic sequence of encoding is the proteinic corresponding nucleic sequence (SEQ.ID.NO.9) in protein (the being also referred to as RXA077) sequence (SEQ.ID.NO.10) in the sulfate reduction and the sulfate reduction of encoding.
Other particularly preferred protein sequence from amino acid biosynthetic pathway under each situation, have shown in the table 1 for this proteinic aminoacid sequence, wherein each protein have on at least one position in the amino acid position of this aminoacid sequence shown in table 2/ the 2nd row with table 2/ the 3rd row with the different raw albumen amino acid of each amino acid shown in the delegation.In a further preferred embodiment, protein has table 2/ the 4th row with the amino acid shown in the delegation on at least one position in the amino acid position of this aminoacid sequence shown in table 2/ the 2nd row.Protein shown in the table 2 is the protein of the sudden change of amino acid biosynthetic pathway, and it has useful especially characteristic and therefore is particularly suitable for by promoter expression corresponding nucleic acids of the present invention, and produces amino acid.For example, the T311I sudden change causes the feedback inhibition of ask to be cut off.
The proteinic corresponding nucleic of said mutation can prepare by ordinary method in the coding schedule 2.
For example, the suitable starting point that is used to prepare the nucleic acid sequences to proteins of encoding mutant is the nucleotide sequence that Corynebacterium glutamicum strain genome or table 1 are mentioned, described Corynebacterium glutamicum strain can obtain from American type culture collection, and preservation is well ATCC13032.For the proteinic aminoacid sequence reverse translation that will suddenly change becomes these nucleic acid sequences to proteins of coding, the codon that advantageously uses that this nucleotide sequence will be imported into or this nucleotide sequence to be present in biology is wherein selected.For example, with regard to Corynebacterium glutamicum, it is favourable using the codon selection of Corynebacterium glutamicum.Can from describe the purpose biology, determine concrete biological codon selection in a manner known way in the database of at least a protein and a kind of this proteinic gene of encoding or the patent application.
Understand the information in the table 2 as follows:
In the 1st row " sign ", for the specified clear and definite title of each related sequence of table 1.
In the 2nd row " AA position ", each numeral refers to come the amino acid position corresponding to peptide sequence in the table 1.Therefore, in " AA position " row " 26 " be meant corresponding shown in the 26th in the amino acid of peptide sequence.The numbering of position is initial by N-terminal+1.
The 3rd row " AA wild-type " in, in each letter representation table 1 on the corresponding wild type strain sequence the 2nd row shown in locational amino acid, it is with the single-letter coded representation.
In the 4th row " AA variant ", at locational amino acid shown in the 2nd row, it is with the single-letter coded representation in each letter representation variation bacterial strain.
In the 5th row " function ", indicate the physiological function of corresponding polypeptide sequence.
With regard to the protein of sudden change with specific function (the 5th row) and specific initial amino acid sequence (table 1), the 2nd, 3 and 4 row have been described a plurality of sudden changes of at least one sudden change and some sequence.These a plurality of sudden changes are meant immediate above-mentioned initial amino acid sequence (table 1) under each situation all the time." at least one amino acid position " of term specific amino acids sequence preferably is meant in the 2nd, 3 and 4 row for described at least one sudden change of this aminoacid sequence.
The amino acid whose single-letter code of raw albumen:
The A L-Ala
The C halfcystine
The D aspartic acid
E L-glutamic acid
The F phenylalanine
The G glycine
The H Histidine
The I Isoleucine
K Methionin
The L leucine
The M methionine(Met)
The N l-asparagine
The P proline(Pro)
The Q glutamine
The R arginine
The S Serine
The T Threonine
The V Xie Ansuan
The W tryptophane
Y tyrosine
Table 2
The 1st row | The 2nd row | The 3rd row | The 4th row | The 5th row |
Sign | The AA position | The AA wild-type | The AA variant | Function |
ask | 317 | S | A | E.C. 2.7.2.4. |
311 | T | I | ||
279 | A | T | ||
asd | 66 | D | G | Aspartate-semialdehyde dehydrogenase |
234 | R | H | ||
272 | D | E | ||
285 | K | E | ||
20 | L | F | ||
dapA | 2 | S | A | The dihydrodipicolinic acid synthase |
84 | K | N | ||
85 | L | V | ||
dapB | 91 | D | A | The dihydrodipicolinate reductase |
83 | D | N | ||
ddh | 174 | D | E | Meso diaminopimelic acid D-desaturase |
235 | F | L | ||
237 | S | A | ||
lysA | 265 | A | D | Diamino-pyridine formic acid decarboxylase |
320 | D | N | ||
332 | I | V | ||
argS | 355 | G | D | Arginyl-tRNA synthetase |
156 | A | S | ||
513 | V | A | ||
540 | H | R | ||
zwf | 8 | S | T | Glucose-6-phosphate dehydrogenase (G6PD) |
150 | T | A | ||
321 | G | S | ||
gap | 264 | G | S | Glyceraldehyde-3-phosphate dehydrogenase |
pycA | 7 | S | L | Pyruvate carboxylase |
153 | E | D | ||
182 | A | S | ||
206 | A | S | ||
227 | H | R | ||
455 | A | G |
458 | P | S | ||
639 | S | T | ||
1008 | R | H | ||
1059 | S | P | ||
1120 | D | E | ||
pck | 162 | H | Y | The PEP carboxylase |
241 | G | D | ||
829 | T | R | ||
thrB | 103 | S | A | Homoserine kinase |
190 | T | A | ||
133 | A | V | ||
138 | P | S | ||
thrC | 69 | G | R | Threonine synthase |
478 | T | I | ||
RXA330 | 85 | I | M | Threonine is discharged protein |
161 | F | I | ||
195 | G | D | ||
hom | 104 | V | I | Homoserine dehydrogenase |
116 | T | I | ||
148 | G | A | ||
59 | V | A | ||
270 | T | S | ||
345 | R | P | ||
268 | K | N | ||
61 | D | H | ||
72 | E | Q | ||
lysR1 | 80 | R | H | Transcriptional LysR1 |
lysR3 | 142 | R | W | Transcriptional LysR3 |
179 | A | T | ||
RXA2739 | 75 | N | D | Transketolase |
329 | A | T | ||
332 | A | T | ||
556 | V | I | ||
RXA2738 | 242 | K | M | Transaldolase |
opcA | 107 | Y | H | OpcA |
219 | K | N | ||
233 | P | S | ||
261 | Y | H | ||
312 | S | F | ||
65 | G | R | Aspartic acid-1-decarboxylase | |
33 | G | S | The 6-phosphogluconolactonase |
Be used for changing or influencing microorganism genetic transcription speed and/or express the invention described above method of speed and be used for producing the following method of genetically modified microorganism (below be called genetically modified microorganism) and be used to produce the following method of biosynthetic products, preferably nucleic acid of the present invention, the present invention that will have a promoter activity with the SacB method expresses unit, said gene and above-mentioned nucleic acid construct or expression cassette imports in the microorganism, particularly they imported in the excellent bacillus.
The SacB method is that those skilled in the art are known, and is described in for example Sch fer A, TauchA, J ger W, Kalinowski J, Thierbach G, P ü hler A.; Small mobilizablemulti-purpose cloning vectors derived from the Escherichia coli plasmidspK18 and pK19:selection of defined deletions in the chromosome ofCorynebacterium glutamicum, Gene.1994 July 22; 145 (1): 69-73 and Blomfield IC, Vaughn V, Rest RF, Eisenstein BI.; Allelic exchange inEscherichia coli using the Bacillus subtilis sacB gene and atemperature-sensitive pSC101 replicon; Mol Microbiol.1991 June; 5 (6): 1447-57.
In a preferred embodiment of the invention described above method, the nucleic acid of the present invention by will having promoter activity or the present invention express the unit and import and change in the microorganism or influence gene transcription speed and/or expression speed in the microorganism.
In another preferred embodiment of the invention described above method, change in the microorganism or influence gene transcription speed and/or expression speed in the microorganism by above-mentioned nucleic acid construct or expression cassette are imported.
Therefore, the present invention also relates to expression cassette, it comprises:
At least a the present invention expresses the unit,
At least a other treat the express nucleic acid sequence, promptly treat expressing gene, and
Other Genetic Control element under suitable situation, terminator for example, wherein at least a expression unit and another kind treat that the express nucleic acid functional nucleotide sequence links together, and described another kind treats that the express nucleic acid sequence is allogenic for this expression unit.
Treat that the express nucleic acid sequence preference is the proteinic nucleic acid of at least a coding from the fine chemicals biosynthetic pathway.
Treat that the express nucleic acid sequence particularly preferably is selected from following nucleic acid: coding is from the proteinic nucleic acid of raw albumen and non-raw albumen amino acid biosynthetic pathway, coding is from the proteinic nucleic acid of Nucleotide and nucleosides biosynthetic pathway, coding is from the proteinic nucleic acid of organic acid biosynthetic pathway, coding is from the proteinic nucleic acid of lipid and fatty acid biosynthetic pathway, coding is from the proteinic nucleic acid of glycol biosynthetic pathway, coding is from the proteinic nucleic acid of carbohydrate biosynthetic pathway, coding is from the proteinic nucleic acid of aromatic compound biosynthetic pathway, coding is from the proteinic nucleic acid of VITAMIN biosynthetic pathway, coding is from the proteinic nucleic acid of cofactor biosynthetic pathway and the coding proteinic nucleic acid from the enzyme biosynthetic pathway.
Preferred protein from amino acid biosynthetic pathway is described as above, and the example is described in the table 1 and 2.
Select with respect to the physical location for the treatment of expressing gene in expression cassette of the present invention expressing the unit, treat that expressing gene is transcribed and the translation of expressing gene is treated in preferred also adjusting so that express the unit adjusting, and therefore can produce one or more protein.Thus, " can produce " minimizing or blocking-up and/or the increase of production under given conditions that the composing type that comprises production increases, produces under given conditions.Thus, " condition " comprises: (1) adds component in substratum, (2) remove component from substratum, (3) with a kind of composition in the another kind of component replacement substratum, (4) temperature of raising substratum, (5) temperature of reduction substratum, and (6) regulate atmospheric condition, for example oxygen that substratum kept or nitrogen concentration.
The invention further relates to the expression vector that comprises the invention described above expression cassette.
Carrier is known for those skilled in the art, and can find in " Cloning Vectors " (people such as PouwelsP.H., editor, Elsevier, Amsterdam-New York-Oxford, 1985).Except that plasmid, carrier also is meant all other carriers well known by persons skilled in the art, for example phage, transposon, IS element, phasmid, clay and linearity or cyclic DNA.These carriers can or carry out chromosome duplication at the host living beings self-replicating.
Suitable and particularly preferred plasmid is those plasmids that duplicate in excellent bacillus.Numerous known plasmid vectors are pZ1 (people such as Menkel for example, Applied and Environmental Microbiology (1989) 64:549-554), pEKEx1 (people such as Eikmanns, Gene102:93-98 (1991)) or pHS2-1 (people such as Sonnen, Gene107:69-74 (1991)) based on concealed plasmid pHM1519, pBL1 or pGA1.Can use other plasmid vector in the same manner, for example pCLiK5MCS or based on pCG4 (US-A4,489,160) or pNG2 (people such as Serwold-Davis, FEMS MicrobiologyLetters66,119-124 (1990)) or pAG1 (US-A5,158,891) those plasmid vectors.
What equally also be suitable for is following those plasmid vectors, promptly can use the gene amplification method of chromosomal integration to duplicate and the hom-thrB operon that increases by means of these plasmid vectors, of people such as Reinscheid (Applied and Environmental Microbiology 60,126-132 (1994)).In the method, complete genome is cloned into and can duplicates in host's (being generally E.coli) and in Corynebacterium glutamicum not in the plasmid vector of reproducible.The example of appropriate carrier is pSUP301 (people such as Sirnon, Bio/Technology1,784-791 (1983)), pK18mob or pK19mob (people such as Sch fer, Gene145,69-73 (1994), people such as Bernard, Journal of Molecular Biology, 234:534-541 (1993)), pEM1 (people such as Schrumpf, 1991, Journal of Bacteriology 173:4510-4516) or pBGS8 (people such as Spratt, 1986, Gene41:337-342).By transforming, the plasmid vector that will comprise gene to be amplified shifts and enters in the purpose Corynebacterium glutamicum strain subsequently.The method that is used to transform for example is described in people (Applied Microbiology andBiotechnology 29 such as Thierbach, 356-362 (1988)), (Biotechnology 7 for Dunican and Shivnan, 1067-1070 (1989)) and the method among the people (FEMS Microbiological Letters 123,343-347 (1994)) such as Tauch.
The invention further relates to genetically modified microorganism, wherein this genetic modification effect causes comparing with wild-type and changes or influence at least a gene transcription speed, and it depends on:
A) change at least a ratio promoter activity of endogenous nucleic acid in microorganism that has according to the 1st promoter activity, wherein said endogenous nucleic acid is regulated transcribing of at least a native gene, or
B) by have according to the nucleic acid of the 1st promoter activity or by have according to the ratio promoter activity of embodiment change a), have according to the nucleic acid of the 1st promoter activity and regulate gene transcription in the microorganism, wherein said gene is allogenic for the described nucleic acid with promoter activity.
With regard to aforesaid method, by have according to the nucleic acid of the 1st promoter activity or by have according to the ratio promoter activity of embodiment change a), to have according to the nucleic acid of the 1st promoter activity be to realize in the following manner to the adjusting of genetic transcription in the microorganism:
B1) one or more are had according to the 1st promoter activity, the nucleic acid that under suitable situation, has a ratio promoter activity of change and import in the microbial genome, so that having of being imported according to the 1st have promoter activity, under the control of the nucleic acid of the ratio promoter activity that has change under the suitable situation, carry out transcribing of one or more native genes, or
B2) one or more genes are imported in microbial genome, so that have promoter activity, under the control of the endogenous nucleic acid of the ratio promoter activity that has change under the suitable situation, carrying out transcribing of one or more quiding genes according to the 1st, or
B3) one or more nucleic acid constructs are imported in microorganisms, described nucleic acid construct comprises and has according to the 1st promoter activity, the nucleic acid of ratio promoter activity that has change under suitable situation and one or more nucleic acid to be transcribed of functional connection.
The invention further relates to wild-type and compare the genetically modified microorganism that at least a gene transcription speed has improved or influenced, wherein
Ah) compare with wild-type, the ratio promoter activity of endogenous nucleic acid in microorganism that has according to the 1st promoter activity increases, and wherein said endogenous nucleic acid is regulated native gene and transcribed, or
Bh) by having according to the nucleic acid of the 1st promoter activity or by having according to embodiment ah) the nucleic acid of ratio promoter activity of increase regulate gene transcription in the microorganism, wherein said gene is allogenic for the nucleic acid with promoter activity.
With regard to aforesaid method, by having according to the nucleic acid of the 1st promoter activity or by having ratio promoter activity, having according to the adjusting of the nucleic acid of the 1st promoter activity and realize in the following manner to genetic transcription in the microorganism according to embodiment increase a):
Bh1) nucleic acid that one or more is had a ratio promoter activity that has increase under promoter activity according to the 1st, the felicity condition imports in the microbial genome, so that had promoter activity, under the control of the nucleic acid of the ratio promoter activity that has increase under the felicity condition, carry out transcribing of one or more native genes what import, or
Bh2) one or more genes are imported in microbial genome, so that have promoter activity, under the control of the endogenous nucleic acid of the ratio promoter activity that has increase under the felicity condition, carrying out transcribing of one or more quiding genes according to the 1st, or
Bh3) one or more nucleic acid constructs are imported in microorganisms the nucleic acid of described nucleic acid construct comprises the promoter activity that has according to the 1st, have increase under felicity condition ratio promoter activity and one or more nucleic acid to be transcribed of functional connection.
The invention further relates to wild-type and compare the lowered genetically modified microorganism of at least a gene transcription speed, wherein
Ar) compare with wild-type, at least a ratio promoter activity of endogenous nucleic acid in microorganism that has according to the 1st promoter activity reduces, and wherein said endogenous nucleic acid is regulated transcribing of at least a native gene, or
Br) one or more are had according in the embodiment nucleic acid importing microbial genome that reduces promoter activity a), so that carry out transcribing of at least a native gene in having under the nucleic acid control that reduces promoter activity of being imported.
The invention further relates to genetically modified microorganism, wherein genetic modification causes comparing with wild-type the change or the influence of at least a expression of gene speed, and it depends on:
C) compare with wild-type, change at least a ratio expression activity of endogenous expression unit in microorganism according to the 2nd or 3, the expression of at least a native gene is regulated in wherein said endogenous expression unit, or
D) by regulating expression of gene in the microorganism according to the 2nd or 3 expression unit or by having according to the expression unit according to the 2nd or 3 of the ratio expression activity of embodiment change a), wherein said gene is allogenic for expressing the unit.
With regard to aforesaid method, by carrying out the adjusting of genetic expression in the microorganism is realized in the following manner according to the 2nd or 3 expression unit or by the expression unit that has according to the ratio expression activity of embodiment change a) according to the 2nd or 3:
D1) one or more had the importing in the microbial genome of ratio expression activity of change under felicity condition according to the 2nd or 3 expression unit, so that in the expression of under the unitary control of the expression according to the 2nd or 3 of the ratio expression activity that has change under the felicity condition, carrying out one or more native genes that is imported, or
D2) one or more genes are imported in microbial genome, so as to be to have under the felicity condition change the ratio expression activity according to the expression of carrying out one or more quiding genes under the 2nd or 3 the endogenous expression unit control, or
D3) one or more nucleic acid constructs are imported in microorganisms, what described nucleic acid construct was contained in the ratio expression activity that has change under the felicity condition treats express nucleic acid according to one or more of the 2nd or 3 expression unit and functional connection.
The invention further relates to and compare at least a expression of gene speed with wild-type and improved or affected genetically modified microorganism, wherein
Ch) compare with wild-type, at least a ratio expression activity of endogenous expression unit in microorganism according to the 2nd or 3 increases, and wherein said endogenous expression unit is regulated native gene and expressed, or
Dh) by regulating genetic expression in the microorganism according to the 2nd or 3 expression unit or by having according to embodiment increase a) than the expression unit according to the 2nd or 3 of expression activity, wherein said gene is allogenic for expressing the unit.
With regard to aforesaid method, by according to the 2nd or 3 expression unit or by having realizing in the following manner according to the ratio expression activity of embodiment increase a) according to the adjusting of the 2nd or 3 expression unit to genetic expression in the microorganism:
Dh1) one or more had the importing in the microbial genome of ratio expression activity of increase under felicity condition according to the 2nd or 3 expression unit, so that imported in the ratio expression activity that has increase under the felicity condition according to the 2nd or 3 expression unit control under carry out the expression of one or more native genes, or
Dh2) one or more genes are imported in microbial genome, so as to be to have under the felicity condition increase the ratio expression activity according to the expression of carrying out one or more quiding genes under the 2nd or 3 the endogenous expression unit control, or
Dh3) one or more nucleic acid constructs are imported in microorganisms, what described nucleic acid construct was contained in the ratio expression activity that has increase under the felicity condition treats express nucleic acid according to one or more of the 2nd or 3 expression unit and functional connection.
The invention further relates to wild-type and compare the lowered genetically modified microorganism of at least a expression of gene speed, wherein
Cr) compare with wild-type, at least a ratio expression activity of endogenous expression unit in microorganism according to the 2nd or 3 reduces, and the expression of at least a native gene is regulated in wherein said endogenous expression unit, or
Dr) one or more had reduce importing in the microbial genome of expression activity according to the 2nd or 3 expression unit, so as having of being imported reduce expression activity according to the 2nd or 3 expression unit control under carry out the expression of at least a native gene.
The invention further relates to genetically modified microorganism, it comprises the expressing gene for the treatment of according to the 2nd or 3 expression unit and functional connection, and wherein said gene is allogenic for expressing the unit.
This genetically modified microorganism especially preferably comprises expression cassette of the present invention.
The present invention especially preferably relates to genetically modified microorganism, the particularly excellent bacillus that comprises carrier, particularly shuttle vectors or plasmid vector, and described carrier contains at least a as the defined recombinant nucleic acid construct of the present invention.
In a preferred embodiment of genetically modified microorganism, said gene is the proteinic nucleic acid of at least a coding from the fine chemicals biosynthetic pathway.
In a particularly preferred embodiment of genetically modified microorganism, said gene is selected from: coding is from the proteinic nucleic acid of raw albumen amino acid and non-raw albumen amino acid biosynthetic pathway, coding is from the proteinic nucleic acid of Nucleotide and nucleosides biosynthetic pathway, coding is from the proteinic nucleic acid of organic acid biosynthetic pathway, coding is from the proteinic nucleic acid of lipid and fatty acid biosynthetic pathway, coding is from the proteinic nucleic acid of glycol biosynthetic pathway, coding is from the proteinic nucleic acid of carbohydrate biosynthetic pathway, coding is from the proteinic nucleic acid of aromatic compound biosynthetic pathway, coding is from the proteinic nucleic acid of VITAMIN biosynthetic pathway, coding is from the proteinic nucleic acid of cofactor biosynthetic pathway and the coding proteinic nucleic acid from the enzyme biosynthetic pathway, and wherein said gene can be chosen wantonly and comprise other regulatory element.
Preferred protein from amino acid biosynthetic pathway is selected from: E.C. 2.7.2.4., aspartate-semialdehyde dehydrogenase, diaminopimelate dehydrogenase, diaminapimelate decarboxylase, the dihydrodipicolinic acid synthase, the dihydrodipicolinate reductase, glyceraldehyde-3-phosphate dehydrogenase, the glycerol 3-phosphate acid kinase, pyruvate carboxylase, triose-phosphate isomerase, transcriptional LuxR, transcriptional LysR1, transcriptional LysR2, oxysuccinic acid-quinone oxidoreductase, glucose-6-phosphate dehydrogenase (G6PD), 6-Phosphogluconic dehydrogenase, transketolase, transaldolase, homoserine O-Transacetylase, cystathionine Gamma synthase, the cystathionine beta lyase, serine hydroxymethylase, the O-acetylhomoserine sulfhydrylase, Methylene tetrahydrofolate reductase, phosphoserine aminotransferase, phosphoserine phosphatase, serine acetyltransferase, homoserine dehydrogenase, homoserine kinase, threonine synthase, Threonine is exported sub-carrier, threonine dehydra(ta)se, pyruvic oxidase, Methionin output, the vitamin H ligase enzyme, cysteine synthase I, cysteine synthase II, actimide dependent form methionine synthases, non-actimide dependent form methionine synthases activity, sulfate adenylyl transferase subunit 1 and 2, adenosine phosphate-phosphinylidyne sulfate reduction enzyme, ferredoxin-sulfite reductase, ferredoxin NADP reductase enzyme, 3-phosphoglyceric acid dehydroenase, the RXA00655 instrumentality, the RXN2910 instrumentality, Arginyl-tRNA synthetase, Phosphoenolpyruvate carboxylase, Threonine is discharged protein, serine hydroxymethylase, fructose-1, the protein RXA077 of sulfate reduction, the protein RXA248 of sulfate reduction, the protein RXA247 of sulfate reduction, protein OpcA, 1-Phosphofructokinase and fructose-1, 6-diphosphate kinases.
As above be described in table 1 and the table 2 from the protein of amino acid biosynthetic pathway and the special preferred embodiment of gene.
Preferred microorganism or genetically modified microorganism are bacterium, algae, fungi or yeast.
Particularly, particularly preferred microorganism is excellent bacillus.
Preferred excellent bacillus is a corynebacterium genus bacteria, Corynebacterium glutamicum particularly, acetylglutamate rod bacillus (Corynebacterium acetoglutamicum), Corynebacterium acctoacidophlum (Corynebacterium acetoacidophilum), heat is produced ammonia rod bacillus (Corynebacteriumthermoaminogenes), corynebacterium melassecola (Corynebacterium melassecola) and Corynebacterium efficiens or brevibacterium sp bacterium, brevibacterium flavum (Brevibacterium flavum) particularly, brevibacterium lactofermentum (Brevibacteriumlactofermentum) and fork tyrothricin (Brevibacterium divaricatum).
Particularly preferred excellent bacillus and brevibacterium sp bacterium are selected from: Corynebacterium glutamicum ATCC 13032, acetylglutamate rod bacillus ATCC 15806, Corynebacterium acctoacidophlum ATCC 13870, heat is produced ammonia rod bacillus FERM BP-1539, corynebacterium melassecola ATCC 17965, Corynebacteriumefficiens DSM 44547, Corynebacteriam efficiens DSM 44548, Corynebacteriam efficiens DSM 44549, brevibacterium flavum ATCC 14067, brevibacterium lactofermentum ATCC 13869, fork tyrothricin ATCC 14020, Corynebacterium glutamicum KFCC10065 and Corynebacterium glutamicum ATCC 21608.
Abbreviation KFCC is meant Korea S federal fungus preservation center, and abbreviation ATCC is meant American type culture collection, and abbreviation DSM is meant German microbial preservation center (Deutsche Sarumlungvon Mikrorganismen).
Other particularly preferred excellent bacillus and brevibacterium sp bacterium are listed in the table 3:
Bacterium | Preserving number | ||||||||
Belong to | Kind | ATCC | FERM | NRRL | CEC T | NCIMB | CBS | NCT C | DSM Z |
Tyrothricin | Brevibacterium ammoniagenes (ammoniagenes) | 21054 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 19350 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 19351 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 19352 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 19353 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 19354 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 19355 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 19356 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 21055 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 21077 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 21553 | |||||||
Tyrothricin | Brevibacterium ammoniagenes | 21580 |
Tyrothricin | Brevibacterium ammoniagenes | 39101 | |||||||
Tyrothricin | Butyric acid tyrothricin (butanicum) | 21196 | |||||||
Tyrothricin | Fork tyrothricin (divaricatum) | 21792 | P928 | ||||||
Tyrothricin | Brevibacterium flavum | 21474 | |||||||
Tyrothricin | Brevibacterium flavum | 21129 | |||||||
Tyrothricin | Brevibacterium flavum | 21518 | |||||||
Tyrothricin | Brevibacterium flavum | B11474 | |||||||
Tyrothricin | Brevibacterium flavum | B11472 | |||||||
Tyrothricin | Brevibacterium flavum | 21127 | |||||||
Tyrothricin | Brevibacterium flavum | 21128 | |||||||
Tyrothricin | Brevibacterium flavum | 21427 | |||||||
Tyrothricin | Brevibacterium flavum | 21475 | |||||||
Tyrothricin | Brevibacterium flavum | 21517 | |||||||
Tyrothricin | Brevibacterium flavum | 21528 | |||||||
Tyrothricin | Brevibacterium flavum | 21529 | |||||||
Tyrothricin | Brevibacterium flavum | B11477 | |||||||
Tyrothricin | Brevibacterium flavum | B11478 | |||||||
Tyrothricin | Brevibacterium flavum | 21127 | |||||||
Tyrothricin | Brevibacterium flavum | B11474 | |||||||
Tyrothricin | Xi Shi tyrothricin (healii) | 15527 | |||||||
Tyrothricin | ketoglutamicum | 21004 | |||||||
Tyrothricin | ketoglutamicum | 21089 | |||||||
Tyrothricin | ketosoreductum | 21914 | |||||||
Tyrothricin | Brevibacterium lactofermentum | 70 | |||||||
Tyrothricin | Brevibacterium lactofermentum | 74 |
Tyrothricin | Brevibacterium lactofermentum | 77 | |||||||
Tyrothricin | Brevibacterium lactofermentum | 21798 | |||||||
Tyrothricin | Brevibacterium lactofermentum | 21799 | |||||||
Tyrothricin | Brevibacterium lactofermentum | 21800 | |||||||
Tyrothricin | Brevibacterium lactofermentum | 21801 | |||||||
Tyrothricin | Brevibacterium lactofermentum | B11470 | |||||||
Tyrothricin | Brevibacterium lactofermentum | B11471 | |||||||
Tyrothricin | Brevibacterium lactofermentum | 21086 | |||||||
Tyrothricin | Brevibacterium lactofermentum | 21420 | |||||||
Tyrothricin | Brevibacterium lactofermentum | 21086 | |||||||
Tyrothricin | Brevibacterium lactofermentum | 31269 | |||||||
Tyrothricin | Brevibacterium linens (linens) | 9174 | |||||||
Tyrothricin | Brevibacterium linens | 19391 | |||||||
Tyrothricin | Brevibacterium linens | 8377 | |||||||
Tyrothricin | paraffinolyticum | 11160 | |||||||
Tyrothricin | Brevibacterium sp certain | 717.73 | |||||||
Tyrothricin | Brevibacterium sp certain | 717.73 | |||||||
Tyrothricin | Brevibacterium sp certain | 14604 | |||||||
Tyrothricin | Brevibacterium sp certain | 21860 | |||||||
Tyrothricin | Brevibacterium sp certain | 21864 | |||||||
Tyrothricin | Brevibacterium sp certain | 21865 | |||||||
Tyrothricin | Brevibacterium sp certain | 21866 | |||||||
Tyrothricin | Brevibacterium sp certain | 19240 | |||||||
The rod bacillus | Corynebacterium acctoacidophlum | 21476 | |||||||
The rod bacillus | Corynebacterium acctoacidophlum | 13870 | |||||||
The rod bacillus | Acetylglutamate rod bacillus | B11473 | |||||||
The rod bacillus | Acetylglutamate rod bacillus | B11475 |
The rod bacillus | Acetylglutamate rod bacillus | 15806 | |||||||
The rod bacillus | Acetylglutamate rod bacillus | 21491 | |||||||
The rod bacillus | Acetylglutamate rod bacillus | 31270 | |||||||
The rod bacillus | Have a liking for acetyl rod bacillus (acetophilum) | B3671 | |||||||
The rod bacillus | Produce ammonia rod bacillus (ammoniagenes) | 6872 | 2399 | ||||||
The rod bacillus | Produce ammonia rod bacillus | 15511 | |||||||
The rod bacillus | fujiokense | 21496 | |||||||
The rod bacillus | Corynebacterium glutamicum | 14067 | |||||||
The rod bacillus | Corynebacterium glutamicum | 39137 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21254 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21255 | |||||||
The rod bacillus | Corynebacterium glutamicum | 31830 | |||||||
The rod bacillus | Corynebacterium glutamicum | 13032 | |||||||
The rod bacillus | Corynebacterium glutamicum | 14305 | |||||||
The rod bacillus | Corynebacterium glutamicum | 15455 | |||||||
The rod bacillus | Corynebacterium glutamicum | 13058 | |||||||
The rod bacillus | Corynebacterium glutamicum | 13059 | |||||||
The rod bacillus | Corynebacterium glutamicum | 13060 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21492 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21513 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21526 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21543 | |||||||
The rod bacillus | Corynebacterium glutamicum | 13287 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21851 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21253 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21514 |
The rod bacillus | Corynebacterium glutamicum | 21516 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21299 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21300 | |||||||
The rod bacillus | Corynebacterium glutamicum | 39684 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21488 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21649 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21650 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19223 | |||||||
The rod bacillus | Corynebacterium glutamicum | 13869 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21157 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21158 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21159 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21355 | |||||||
The rod bacillus | Corynebacterium glutamicum | 31808 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21674 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21562 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21563 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21564 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21565 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21566 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21567 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21568 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21569 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21570 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21571 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21572 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21573 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21579 |
The rod bacillus | Corynebacterium glutamicum | 19049 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19050 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19051 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19052 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19053 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19054 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19055 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19056 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19057 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19058 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19059 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19060 | |||||||
The rod bacillus | Corynebacterium glutamicum | 19185 | |||||||
The rod bacillus | Corynebacterium glutamicum | 13286 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21515 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21527 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21544 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21492 | |||||||
The rod bacillus | Corynebacterium glutamicum | B8183 | |||||||
The rod bacillus | Corynebacterium glutamicum | B8182 | |||||||
The rod bacillus | Corynebacterium glutamicum | B12416 | |||||||
The rod bacillus | Corynebacterium glutamicum | B12417 | |||||||
The rod bacillus | Corynebacterium glutamicum | B12418 | |||||||
The rod bacillus | Corynebacterium glutamicum | B11476 | |||||||
The rod bacillus | Corynebacterium glutamicum | 21608 | |||||||
The rod bacillus | Lily rod bacillus (lilium) | P973 | |||||||
The rod bacillus | Have a liking for nitrogen rod bacillus | 21419 | 11594 |
(nitrilophilus) | |||||||||
The rod bacillus | Corynebacterium certain | P4445 | |||||||
The rod bacillus | Corynebacterium certain | P4446 | |||||||
The rod bacillus | Corynebacterium certain | 31088 | |||||||
The rod bacillus | Corynebacterium certain | 31089 | |||||||
The rod bacillus | Corynebacterium certain | 31090 | |||||||
The rod bacillus | Corynebacterium certain | 31090 | |||||||
The rod bacillus | Corynebacterium certain | 31090 | |||||||
The rod bacillus | Corynebacterium certain | 15954 | 20145 | ||||||
The rod bacillus | Corynebacterium certain | 21857 | |||||||
The rod bacillus | Corynebacterium certain | 21862 | |||||||
The rod bacillus | Corynebacterium certain | 21863 |
These abbreviations have following implication:
ATCC: American type culture collection, Rockville, MD, the U.S.
FERM: fermentation research institute, Chiba, Japan
NRRL:ARS preservation center, northern Agricultural Research Institute, Peoria, IL, the U.S.
CECT: Spain typical case's culture collection center, Valencia, Spain
NCIMB: state-run industry and marine microorganism preservation company limited, Aberdeen, Britain
CBS: fungi strain preservation center, Baarn, Holland
NCTC: state-run typical culture collection center, London, Britain
DSMZ: German microbial preservation and cell cultures center, Brunswick, Germany.
Express the unit by nucleic acid of the present invention and the present invention, can regulate the pathways metabolism of the particular organisms synthetic product in the genetically modified microorganism of the invention described above by means of the method for the invention described above with promoter activity.
For this purpose, for example, causing the pathways metabolism of particular organisms synthetic product or to improve in this biosynthetic pathway genetic transcription speed or to express speed by influence strengthens, wherein the protein quantity of Zeng Jiaing causes these proteinic gross activities of purpose biosynthetic pathway to increase, and the metabolic flux that therefore causes leading to the purpose biosynthetic products increases.
In addition, can weaken by genetic transcription speed or the expression speed that reduces this branch's biosynthetic pathway from particular organisms synthetic product ramose pathways metabolism, wherein the protein quantity of Jian Shaoing causes those proteinic gross activities of unnecessary biosynthetic pathway to reduce, and the metabolic flux that therefore additionally causes leading to the purpose biosynthetic products increases.
Genetically modified microorganism of the present invention for example can produce from glucose, sucrose, lactose, fructose, maltose, molasses, starch, cellulosic biosynthetic products or from glycerine and alcoholic acid biosynthetic products.
Therefore, the present invention relates to produce the method for thing synthetic product next life by cultivating genetically modified microorganism of the present invention.
Depend on the purpose biosynthetic products, must improve or reduce the transcription rate of several genes or express speed.Usually, advantageously change a plurality of gene transcription speed or express speed, promptly improve the transcription rate of the assortment of genes or express speed and/or the transcription rate of the reduction assortment of genes or expression speed.
In genetically modified microorganism of the present invention, altered (promptly improve or the reduce) transcription rate of at least a gene or to express speed be to express the unit owing to nucleic acid of the present invention or the present invention with promoter activity.
In addition, (promptly extra that improve or extra reduce) transcription rate of the extra change of other gene or express speed and can (but be not must) be derived from nucleic acid of the present invention or the present invention and express the unit in the genetically modified microorganism with promoter activity.
Therefore, the invention further relates to the method that produces the thing synthetic product by cultivation genetically modified microorganism of the present invention next life.
Preferred biosynthetic products is a fine chemicals.
Term " fine chemicals " is known in the art and comprise by biological production and be used for for example compound of (but being not limited to) pharmacy industry, agricultural, cosmetic industry, grocery trade and feed industry of many kind industry.These compounds comprise organic acid, tartrate for example, methylene-succinic acid and diaminopimelic acid, raw albumen amino acid and non-raw albumen amino acid, purine and pyrimidine bases, nucleosides and Nucleotide (as are described in for example Kuninaka, A. (1996) Nucleotides and related compounds, the 561-612 page or leaf, at Biotechnology, the 6th volume, editor Rehm etc., VCH:Weinheim and reference wherein), lipid, saturated and unsaturated fatty acids (for example arachidonic acid), dibasic alcohol (as propylene glycol and butyleneglycol), carbohydrate (as hyaluronic acid and trehalose), aromatic substance is (as aromatic amine, Vanillin and indigo), VITAMIN and cofactor (as are described in Ullmann ' s Encyclopedia of IndustrialChemistry, the A27 volume, " Vitamins ", the 443-613 page or leaf, (1996) VCH:Weinheim and reference wherein; And Ong, A.S., Niki, E. and Packer, L. (1995) " Nutrition; Lipids; Health and Disease " UNESCO procceedings/Confederation of Scientificand Technological Associations in Malaysia and the Society for Free RadicalResearch-Asia, 1-3 day in September, 1994 holds in Malaysian Penang, AOCSPress (1995)), enzyme reaches by Gutcho (1983) at Chemicals by Fermentation, NoyesData Corporation, ISBN:0818805086 and in all other chemical described in the reference pointed out.Below further specify the metabolism and the purposes of specific fine chemicals.
I. amino acid whose metabolism and purposes
Amino acid constitutes the infrastructure element of all proteins and is essential for the normal function of cell therefore.Term " amino acid " is known in the art.Raw albumen amino acid has 20 kinds, they work as proteinic structural unit, amino acid links together by peptide bond in protein, but not raw albumen amino acid (known have hundreds of) does not appear at usually in the protein and (sees Ullmann ' sEncyclopedia of Industrial Chemistry, the A2 volume, the 57-97 page or leaf, VCH:Weinheim (1985)).Though L-amino acid is naturally to have unique one type common in the protein, amino acid can exist with D or L configuration.Each biosynthesizing and degradation pathway have been carried out fine sign (for example seeing Stryer, L.Biochemistry, the 3rd edition, 578-590 page or leaf (1988)) in 20 kinds of raw albumen amino acid in prokaryotic cell prokaryocyte and eukaryotic cell." essential " amino acid (Histidine, Isoleucine, leucine, Methionin, methionine(Met), phenylalanine, Threonine, tryptophane and Xie Ansuan) can be transformed into other 11 kinds of " nonessential " amino acid (L-Ala, arginine, l-asparagine, aspartic acid, halfcystine, L-glutamic acid, glutamine, glycine, proline(Pro), Serine and tyrosine) by simple biosynthetic pathway, for " essential " amino acid, why so address be because: since its biosynthetic complicacy its must from food, absorb.Higher animal can be synthesized some amino acid in these amino acid, synthesizes so that carry out normal protein matter but must absorb indispensable amino acid from food.
Except its function in the protein biosynthesizing, these amino acid itself are interesting compounds, for example have been found that many amino acid have multiple application in food, feed, chemical, makeup, agricultural and pharmacy industry.Not only for human nutrition, and for simple stomach species such as poultry and pig, Methionin is important amino acid.L-glutamic acid is the most frequently usedly to make odor control additive (msg powder type MSG), and is widely used in grocery trade, and aspartic acid, phenylalanine, glycine and halfcystine are like this equally.Glycine, L-methionine(Met) and tryptophane all are used for pharmacy industry.Glutamine, Xie Ansuan, leucine, Isoleucine, Histidine, arginine, proline(Pro), Serine and L-Ala are used for pharmacy industry and cosmetic industry.Threonine, tryptophane and D/L-methionine(Met) are widely used in fodder additives (Leuchtenberger, W. (1996) Amino acids-Technical production anduse, the 466-502 page or leaf, people such as Rehm, (editor) Biotechnology, the 6th volume, the 14a chapter, VCH:Weinheim).Have been found that, these amino acid additionally are suitable as the precursor of synthesizing amino acid and protein synthesis, as N-acetylcystein, S-carboxymethyl-L-halfcystine, (S)-5-hydroxytryptophan and be described in Ullmann ' s Encyclopedia of Industrial Chemistry, the A2 volume, the 57-97 page or leaf, VCH:Weinheim, other material in 1985.
Characterized the biosynthesizing of these natural amino acids in the biology that can produce them (for example bacterium) (and the summary of regulating synthetic well for the bacterium amino acid bio, see Umbarger, H.E. (1978) Ann.Rev.Biochem.47:533-606).L-glutamic acid is synthetic by the reductive amination reaction of α-Tong Wuersuan (a kind of intermediate in the tricarboxylic acid cycle).Glutamine, proline(Pro) and arginic each produce in succession by L-glutamic acid.In three step method, carry out the Serine biosynthesizing, start from 3-phoshoglyceric acid (glucolytic intermediate), and after oxidation, commentaries on classics amino and hydrolysing step, obtain this amino acid.Halfcystine and glycine respectively produce since Serine, and the former produces by the condensation of homocysteine and Serine, and the latter produces by in the catalytic reaction of serine transhydroxymethylase the side chain beta carbon being transferred to tetrahydrofolic acid (THFA).Phenylalanine and tyrosine are synthetic in 9 step biosynthetic pathways from the precursor E4P and the phosphoenolpyruvic acid of glycolysis-and pentose-phosphate pathway, and it only separates in last two steps after prephenic acid is synthetic.Tryptophane produces from these two starting molecules equally, but its approach by 11 steps is synthetic.Tyrosine also can prepare from phenylalanine by the Phenylalanine hydroxylase catalyzed reaction.L-Ala, Xie Ansuan and leucine are respectively since the biosynthesizing of glycolysis-end product pyruvic acid.Aspartic acid forms from oxaloacetic acid (intermediate of tricarboxylic acid cycle).L-asparagine, methionine(Met), Threonine and Methionin transform by aspartic acid separately and produce.Isoleucine forms from Threonine.Histidine forms from ribose 5-phosphate-1-tetra-sodium (a kind of activation sugar) in 9 step approach of complexity.
The amino acid that surpasses protein biosynthesizing aequum in the cell can't be stored, but be decomposed, so provide intermediate (for summary for the main metabolic pathway in the cell, see Stryer, L.Biochemistry, the 3rd edition, the 21st chapter, " Amino Acid Degradation and the UreaCycle ", 495-516 page or leaf, (1988)).Though cell can be transformed into unwanted amino acid useful metabolism intermediate, amino acid whose production is expensive with regard to synthetic required energy, precursor molecule and enzyme.Therefore the synthetic adjusting that is subjected to feedback inhibition of not strange amino acid bio, the existence of specific amino acids makes himself to produce and slows down or stop fully (for the summary of Feedback mechanism in the amino acid biosynthetic pathway thus, see Stryer, L.Biochemistry, the 3rd edition, the 24th chapter, " Biosynthesisof Amino Acids and Heme ", the 575-600 page or leaf, (1988)).Therefore the output of specific amino acids is subjected to this amino acid quantitative limitation in the cell.
II. the metabolism and the purposes of VITAMIN, cofactor and nutriment (Nutraceutical)
VITAMIN, cofactor and nutriment comprise the molecule of other group.Higher animal has been lost the ability of synthesizing them, thus must absorb, but it can be biological synthetic as bacterium by other easily.These molecules are biologically active molecule own or are the biologically active substance precursor as electron carrier in many pathways metabolisms or intermediate.These compounds are except having nutritive value, and they also have tangible industrial value as tinting material, antioxidant and catalyzer or other processing auxiliary material.(for the summary of structure, activity and the industrial application of these compounds, seeing for example Ullmann ' sEncyclopedia of Industrial Chemistry, " Vitamins ", A27 volume, 443-613, VCH:Weinheim, 1996).Term " VITAMIN " is known in the art and comprise that biological normal function is required but can't be by the synthetic nutrition of this biology own.The VITAMIN group can comprise cofactor and nutriment compound.Term " cofactor " comprises the active required non-protein compound of normal enzyme.These compounds can be organic or inorganic; Cofactor molecule of the present invention is preferably organic.Term " nutriment " is included in the food additive that plant and animal, particularly philtrum have the health-promoting effect.The example of this quasi-molecule is VITAMIN, antioxidant and some lipid (as polyunsaturated fatty acid).
The biosynthesizing of these molecules in the biology that can produce them (as bacterium) at length characterized (Ullmann ' s Encyclopedia of Industrial Chemistry, " Vitamins ", the A27 volume, the 443-613 page or leaf, VCH:Weinheim, 1996, Michal, G (1999) BiochemicalPathways:An Atlas of Biochemistry and Molecular Biology, John Wilely﹠amp; Sons; Ong, A.S., Niki, E. and Packer, L. (1995) " Nutrition; Lipids, Health andDisease " UNESCO procceedings/Confederation of Scientific and TechnologicalAssociations in Malaysia and the Society for Free Radical Research-Asia, 1-3 day in September, 1994 holds in Malaysian Penang, AOCS Press, Champaign, IL X, 374S).
Thiamines (VITMAIN B1) is formed by pyrimidine and thiazole unit chemical coupling.Riboflavin (Wei ShengsuB2) is synthetic from guanosine 5 '-triphosphoric acid (GTP) and ribose-5 '-phosphoric acid.Riboflavin is used for synthetic flavine mononucleotide (FMN) and flavin adenine dinucleotide (FAD).This compound family is referred to as " vitamin B6 " (for example pyridoxol, Pyridoxylamine, pyridoxal 5 '-phosphoric acid and commercial pyridoxine hydrochloride that uses), and it is all the derivative of common structure unit 5-hydroxyl-6-picoline.Pantothenate (pantothenic acid, R-(+)-N-(2,4-dihydroxyl-3,3-dimethyl-1-oxygen-butyl)-Beta-alanine) can be by chemosynthesis or fermentative preparation.The biosynthetic final step of pantothenic acid is the Beta-alanine of ATP driving and the condensation of pantoic acid.The enzyme of being responsible for being transformed into pantoic acid and being transformed into Beta-alanine and being condensed into the biosynthesizing step of pantothenic acid is known.The metabolic activity form of pantothenic acid is a coenzyme A, and its biosynthesizing is produced by 5 enzymatic steps.Pantothenic acid, pyridoxal phosphate 5 '-phosphoric acid, halfcystine and ATP are the precursor of coenzyme A.These enzymes are the formation of catalysis pantothenic acid not only, also the production of catalysis (R)-pantoic acid, (R)-pantoyl lactone, (R)-panthenol (pro-vitamin B5), pantetheine (and derivative) and coenzyme A.
Study in the microorganism vitamin H in great detail from the biosynthesizing of precursor molecule pimeloyl-CoA, and identified several related genes.Shown that many respective egg white matters participation Fe duster compounds are synthetic and it is protein-based to belong to nifS.Thioctic Acid is derived from sad and as the coenzyme in the energy metabolism, it becomes the moiety of pyruvate dehydrogenase complex and ketoglurate dehydrogenase mixture.The folic acid class is for all being derived from one group of material of folic acid, and folic acid is derived from L-L-glutamic acid, para-amino benzoic acid and 6-methyl petrin successively.The folic acid that begins from metabolic intermediate guanosine 5 '-triphosphoric acid (GTP), L-L-glutamic acid and para-amino benzoic acid and the biosynthesizing of derivative thereof in certain micro-organisms, have been studied in great detail.
Corrinoid (as cobalami, vitamins B particularly
12) and porphyrin belong to one group of chemical by tetrapyrrole loop systems difference.Vitamins B
12To such an extent as to the biosynthesizing too complex understand but existing known most of relevant enzymes and substrate as yet fully.Nicotinic acid (nicotinate) and niacinamide are pyridine derivate, are also referred to as " nicotinic acid ".Nicotinic acid is the precursor of important coenzyme NAD (Reduced nicotinamide-adenine dinucleotide) and NADP (Triphosphopyridine nucleotide, reduced) and reduction form thereof.
Though have some to produce in these compounds, as riboflavin, vitamins B by extensive microorganism culturing
6, pantothenic acid and vitamin H, but the production of these compounds on technical scale is mainly based on acellular chemosynthesis.Has only vitamins B
12Can only pass through fermentative production owing to its synthetic complicacy.In vitro method needs sizable material cost and time, and cost is usually very high.
III. the metabolism of purine, pyrimidine, nucleosides and Nucleotide and purposes
Being used for the gene of purine and pyrimidine metabolic and corresponding protein thereof, to verify in the treatment of tumor disease and virus infection be important target.Term " purine " or " pyrimidine " comprise nitrogenous base, and it is the component of nucleic acid, coenzyme and Nucleotide.Term " Nucleotide " comprises the infrastructure element of nucleic acid molecule, and it comprises nitrogenous base, pentose (this sugar is ribose in RNA, and this sugar is the D-ribodesose in DNA) and phosphoric acid.Term " nucleosides " comprises the molecule as nucleotide precursor, but compares its without phosphorus acid unit with Nucleotide.Biosynthesizing by suppressing these molecules or mobilize and form nucleic acid molecule by suppressing it, it is synthetic to suppress RNA and DNA; In cancer cells, this active target is suppressed then can suppress tumour cell division and the ability of duplicating.
Also have some Nucleotide not form nucleic acid molecule but as energy storage (being AMP) or coenzyme (being FAD and NAD).
Several publications have been described the purposes of these chemical in the medical science indication, purine and/or the pyrimidine metabolic (Christophrson for example that is affected wherein, R.I. and Lyons, S.D. (1990), " Potent inhibitors of de novo pyrimidine and purine biosynthesis aschemotherapeutic agents ", Med.Res.Reviews 10:505-548).The research of purine and the related enzyme of pyrimidine metabolic is concentrated on can be as (Smith, J.L. " Enzymes in Nucleotide Synthesis " Curr.Opin.Struct.Biol.5 (1995) 752-757 on the new drug development of for example immunosuppressor or antiproliferative; Biochem.Soc.Transact.23 (1995) 877-902).Yet, purine and pyrimidine bases, nucleosides and Nucleotide also have other possible purposes: as the intermediate in the multiple fine chemicals biosynthesizing (as thiamines, S-adenosylmethionine, folic acid or riboflavin), as the energy carrier (for example ATP or GTP) of cell and for chemical self usually as odorant (for example IMP or GMP) or be used for many medical uses and (see for example Kuninaka, A., (1996) " Nucleotides and Related Compounds in Biotechnology ", the 6th volume, editor Rehm etc., VCH:Weinheim, the 561-612 page or leaf).The enzyme that participates in purine, pyrimidine, nucleosides or nucleotide metabolism also day by day become the chemical (comprising mycocide, weedicide and sterilant) developed for Crop protection at target.
The metabolism of these compounds in bacterium characterized (for summary, see for example Zalkin, H. and Dixon, J.E. (1992) " De novo purine nucleotide biosynthesis ",: Progressin Nucleic Acids Research and Molecular biology, the 42nd volume, Academic Press, 259-287 page or leaf; And Michal, G. (1999), " Nucleotides and Nucleosides "; The 8th chapter: Biochemical Pathways:An Atlas of Biochemistry and MolecularBiology, Wiley, New York).Purine metabolism is the problem of further investigation, and it is that the cell normal function is necessary.Purine metabolism is impaired in the higher animal may cause serious imbalance, for example gout.By many steps from ribose 5-phosphoric acid via midbody compound inosine 5 '-phosphoric acid (IMP) purine biosynthesis Nucleotide, cause producing guanosine 5 '-single phosphoric acid (GMP) or adenosine 5 '-single phosphoric acid (AMP), can prepare the triphosphoric acid form of using as Nucleotide thus easily.These compounds can also be used as energy storage, so that their degraded can provide energy for the many different Biochemical processes in the cell.The pyrimidine biosynthesizing is carried out via uridine 5 '-single phosphoric acid (UMP) from ribose 5-phosphoric acid.Afterwards UMP is transformed into cytidine 5 '-triphosphoric acid (CTP).Thereby the deoxidation form of all Nucleotide all is the bisphosphate ribodesose form that is produced Nucleotide by bisphosphate ribose form preparation in a step reduction reaction of Nucleotide.After the phosphorylation, it is synthetic that these molecules can participate in DNA.
IV. Trehalose Metabolism and purposes
Trehalose is by with α, and two glucose molecules that α-1,1 key links together are formed.It is used as the additive in sweeting agent, drying or frozen product and the beverage usually in grocery trade.Yet it also is used for pharmacy industry or cosmetic industry and biotechnology industry and (for example sees people such as Nishimoto, (1998) U.S. Patent number 5,759 610; Singer, M.A. and Lindquist, S.Trends Biotech.16 (1998) 460-467; Paiva, C.L.A and Panek, A.D.Biotech Ann.Rev.2 (1996) 293-314; And Shiosaka, M.J.Japan172 (1997) 97-102).Trehalose is released into substratum on every side by the enzyme production of many microorganisms and in natural mode, can separate trehalose from described substratum by methods known in the art.
Particularly preferred biosynthetic products is selected from: organic acid, protein, Nucleotide and nucleosides, raw albumen and non-raw albumen amino acid, lipid and lipid acid, glycol, carbohydrate, aromatic compound, VITAMIN and cofactor, enzyme and protein.
Preferred organic acid is tartrate, methylene-succinic acid and diaminopimelic acid.
Preferred nucleosides and Nucleotide are described in for example Kuninaka, A. (1996) Nucleotides andrelated compounds, 561-612 page or leaf, Biotechnology, the 6th volume, people such as Rehm, editor, VCH:Weinheim and the reference that is wherein occurred.
Preferred biosynthetic products also has lipid in addition, saturated and unsaturated fatty acids such as arachidonic acid, glycol such as propylene glycol and butyleneglycol, carbohydrate such as hyaluronic acid and trehalose, aromatic compound such as aromatic amine, Vanillin and indigo, VITAMIN and cofactor (for example are described in Ullmann ' s Encyclopediaof Industrial Chemistry, the A27 volume, " Vitamins ", 443-613 page or leaf (1996) VCH:Weinheim and the reference and the Ong that are wherein occurred, A.S., Niki, E. with Packer, L. (1995) " Nutrition; Lipids; Health and Disease " UNESCO procceedings/Confederation ofScientific and Technological Associations in Malaysia and the Society for FreeRadical Research-Asia, 1-3 day in September, 1994 holds in Malaysian Penang, AOCS Press (1995)), enzyme, polyketide (people (1998) Science282:63-68 such as Cane) and all are described in Gutcho (1983) Chemicals by Fermentation, Noyes DataCorporation, the chemical substance in ISBN:0818805086 and the wherein pointed reference.
Particularly preferred biosynthetic products is an amino acid, preferred especially indispensable amino acid, particularly being L-glycine, L-L-Ala, L-leucine, L-methionine(Met), L-phenylalanine, L-tryptophane, L-Methionin, L-glutaminate, L-L-glutamic acid, L-Serine, L-proline(Pro), L-Xie Ansuan, L-Isoleucine, L-halfcystine, L-tyrosine, L-Histidine, L-arginine, altheine, L-aspartic acid and L-Threonine, L-homoserine, especially is L-Methionin, L-methionine(Met) and L-Threonine.Amino acid for example is meant amino acid whose L type and D type under Methionin, methionine(Met) and Threonine each situation hereinafter, is preferably the L type, i.e. for example L-Methionin, L-methionine(Met) and L-Threonine.
Particularly, the present invention relates to compare the method that at least a expression of gene speed improves or affected genetically modified microorganism is produced Methionin, wherein by cultivating with wild-type
Ch) compare with wild-type, the ratio expression activity of at least a endogenous expression of the present invention unit in microorganism increases, and the expression of native gene is regulated in wherein said endogenous expression unit, or
Dh) express the unit by the present invention or by having according to embodiment ch) the expression unit of ratio expression activity of increase regulate expression of gene in the microorganism, wherein said gene is allogenic for expressing the unit,
And wherein said gene is selected from: the nucleic acid of coding E.C. 2.7.2.4., the nucleic acid of coding aspartate-semialdehyde dehydrogenase, the nucleic acid of coding diaminopimelate dehydrogenase, the nucleic acid of coding diaminapimelate decarboxylase, coding dihydrodipicolinic acid synthase's nucleic acid, coding dihydrodipicolinate reductase's nucleic acid, the nucleic acid of encoding glycerol aldehyde-3-phosphate dehydrogenase, the kinase whose nucleic acid of coding 3-phoshoglyceric acid, the nucleic acid of coding pyruvate carboxylase, the nucleic acid of coding triose-phosphate isomerase, the nucleic acid of encoding transcription instrumentality LuxR, the nucleic acid of encoding transcription instrumentality LysR1, the nucleic acid of encoding transcription instrumentality LysR2, the nucleic acid of coding oxysuccinic acid-quinone oxidoreductase, the nucleic acid of coding glucose-6-phosphate dehydrogenase (G6PD), the nucleic acid of coding 6-Phosphogluconic dehydrogenase, the nucleic acid of coding transketolase, the nucleic acid of coding transaldolase, the nucleic acid of coding Methionin output, the nucleic acid of the plain ligase enzyme of encoding human, the nucleic acid of coding Arginyl-tRNA synthetase, the nucleic acid of coding Phosphoenolpyruvate carboxylase, encoding fructose-1, the nucleic acid of 6-diphosphatase, the nucleic acid of coded protein OpcA, the nucleic acid of coding 1-Phosphofructokinase and the kinase whose nucleic acid of coding fructose-1, 6-diphosphate.
With regard to aforesaid method, by the present invention express the unit or by having according to embodiment ch) the present invention of ratio expression activity of increase express the unit and can realize in the following manner the adjusting of these genetic expressions in the microorganism:
Dh1) the present invention who one or more is had the ratio expression activity of increase under felicity condition expresses in the unit importing microbial genome, so that express the expression of carrying out one or more native genes under the unit control in the present invention who is imported in the ratio expression activity that has increase under the felicity condition, or
Dh2) in these genes one or more are imported in microbial genome, so that be to have under the felicity condition expression of carrying out one or more quiding genes under the endogenous expression unit control of the present invention of ratio expression activity of increase, or
Dh3) one or more nucleic acid constructs are imported in microorganisms, the present invention that described nucleic acid construct is contained in the ratio expression activity that has increase under the felicity condition express unit and functional connection one or more treat express nucleic acid.
Another preferred embodiment that is used to prepare the aforesaid method of Methionin comprises genetically modified microorganism, it compares at least a in the following activity that also has increase with wild-type, described activity is selected from: the aspartokinase enzymic activity, the aspartate-semialdehyde dehydrogenase activity, the diaminopimelate dehydrogenase activity, the diaminapimelate decarboxylase activity, dihydrodipicolinic acid synthase's activity, dihydrodipicolinate reductase's activity, the glyceraldehyde-3-phosphate dehydrogenase activity, the 3-phoshoglyceric acid kinase activity, the pyruvate carboxylase activity, the triose-phosphate isomerase activity, the activity of transcriptional LuxR, the activity of transcriptional LysR1, the activity of transcriptional LysR2, oxysuccinic acid-quinone oxidoreductase activity, the glucose-6-phosphate dehydrogenase (G6PD) activity, the 6-Phosphogluconic dehydrogenase activity, TKA, the transaldolase activity, Methionin output is active, the Arginyl-tRNA synthetase activity, the Phosphoenolpyruvate carboxylase activity, the fructose-1 activity, protein OpcA activity, the 1-Phosphofructokinase activity, fructose-1, 6-diphosphate kinase activity and vitamin H ligase enzyme activity.
Another particularly preferred embodiment that is used to prepare the aforesaid method of Methionin comprises genetically modified microorganism, it compares at least a in the following activity that also has reduction with wild-type, described activity is selected from: the threonine dehydra(ta)se activity, homoserine O-acetyltransferase activity, O-acetylhomoserine sulfhydrylase activity, the phosphoenolpyruvate carboxykinase activity, the pyruvate oxidation enzymic activity, the homoserine kinase activity, homoserine dehydrogenase activity, Threonine output is active, Threonine is discharged protein active, asparaginase activity, aspartate decarboxylase activity and threonine synthase activity.
Can have the nucleic acid of the present invention of promoter activity and/or the present invention by (but be not must) expresses the unit and causes that above-mentioned these additionally increase or reduce at least a in the activity.
The invention further relates to by cultivating and compare the method that at least a expression of gene speed has improved or affected genetically modified microorganism is produced methionine(Met), wherein with wild-type
Ch) compare with wild-type, the ratio expression activity of at least a endogenous expression of the present invention unit in microorganism increases, and the expression of native gene can be regulated in wherein said endogenous expression unit, or
Dh) express the unit by the present invention or by having according to embodiment ch) the present invention of ratio expression activity of increase express the unit and regulate expression of gene in the microorganism, wherein said gene is allogenic for expressing the unit,
And wherein said gene is selected from: the nucleic acid of coding E.C. 2.7.2.4., the nucleic acid of coding aspartate-semialdehyde dehydrogenase, the nucleic acid of coding homoserine dehydrogenase, the nucleic acid of encoding glycerol aldehyde-3-phosphate dehydrogenase, the kinase whose nucleic acid of coding 3-phoshoglyceric acid, the nucleic acid of coding pyruvate carboxylase, the nucleic acid of coding triose-phosphate isomerase, the nucleic acid of coding homoserine O-Transacetylase, the nucleic acid of coding cystathionine Gamma synthase, the nucleic acid of coding cystathionine beta lyase, the nucleic acid of encoding serine hydroxymethyl transferases, the nucleic acid of coding O-acetylhomoserine sulfhydrylase, the nucleic acid of coding Methylene tetrahydrofolate reductase, the nucleic acid of coding phosphoserine aminotransferase, the nucleic acid of coding phosphoserine phosphatase, the nucleic acid of encoding serine Transacetylase, the active nucleic acid of encoding aminothiopropionic acid synthase I, the nucleic acid of encoding aminothiopropionic acid synthase II, the nucleic acid of coding actimide dependent form methionine synthases, the encode nucleic acid of non-actimide dependent form methionine synthases, the nucleic acid of coding sulfate adenylyl transferase, the nucleic acid of coding phosphor adenosine monophosphate phosphinylidyne sulfate reduction enzyme, the nucleic acid of coding ferredoxin-sulfite reductase, the nucleic acid of coding ferredoxin NADPH-reductase enzyme, the nucleic acid of coding ferredoxin, the nucleic acid of the protein RXA077 of coding sulfate reduction, the nucleic acid of the protein RXA248 of coding sulfate reduction, the nucleic acid of the protein RXA247 of coding sulfate reduction, the nucleic acid of the nucleic acid of coding RXA0655 instrumentality and coding RXN2910 instrumentality.
With regard to aforesaid method, by the present invention express the unit or by having according to embodiment ch) the present invention of ratio expression activity of increase express the unit and can realize in the following manner the adjusting of these genetic expressions in the microorganism:
Dh1) the present invention who one or more is had the ratio expression activity of increase under felicity condition expresses in the unit importing microbial genome, so that express in the present invention of the ratio expression activity that under felicity condition, has increase that is imported and to carry out one or more expression of gene in these native genes under the unit control, or
Dh2) one or more genes are imported in microbial genome, so that be to have under the felicity condition expression of carrying out one or more quiding genes under the endogenous expression unit control of the present invention of ratio expression activity of increase, or
Dh3) one or more nucleic acid constructs are imported in microorganisms, the present invention that described nucleic acid construct is contained in the ratio expression activity that has increase under the felicity condition express unit and functional connection one or more treat express nucleic acid.
Another preferred embodiment that is used to prepare the aforesaid method of methionine(Met) comprises genetically modified microorganism, it compares at least a in the following activity that also has in addition increase with wild-type, described activity is selected from: the aspartokinase enzymic activity, the aspartate-semialdehyde dehydrogenase activity, homoserine dehydrogenase activity, the glyceraldehyde-3-phosphate dehydrogenase activity, the 3-phoshoglyceric acid kinase activity, the pyruvate carboxylase activity, the triose-phosphate isomerase activity, homoserine O-acetyltransferase activity, the cystathionine Gamma synthase activity, cystathionine beta lyase activity, the serine hydroxymethylase activity, O-acetylhomoserine sulfhydrylase activity, the Methylene tetrahydrofolate reductase activity, the phosphoserine aminotransferase activity, the phosphoserine phosphatase activity, the serine acetyltransferase activity, cysteine synthase I activity, cysteine synthase II activity, actimide dependent form methionine synthases activity, non-actimide dependent form methionine synthases activity, the sulfate adenylyl transferase activity, adenosine phosphate-phosphinylidyne sulfate reduction enzymic activity, ferredoxin-sulfite reductase activity, ferredoxin NADPH-reductase activity, the ferredoxin activity, the activity of the protein RXA077 of sulfate reduction, the activity of the protein RXA248 of sulfate reduction, the activity of the protein RXA247 of sulfate reduction, the activity of the activity of RXA655 instrumentality and RXN2910 instrumentality.
Above-mentioned another particularly preferred embodiment that is used to prepare the method for methionine(Met) comprises genetically modified microorganism, it compares at least a in the following activity that also has in addition reduction with wild-type, described activity is selected from: homoserine kinase activity, threonine dehydra(ta)se activity, threonine synthase activity, meso diaminopimelic acid D-dehydrogenase activity, phosphoenolpyruvate carboxykinase activity, pyruvate oxidation enzymic activity, dihydrodipicolinate synthase's activity, dihydrodipicolinate reductase's activity and diamino-pyridine formic acid decarboxylase.
Can have the nucleic acid of the present invention of promoter activity and/or the present invention by (but be not must) expresses the unit and causes at least a in above-mentioned activity that these increase in addition or reduce.
The invention further relates to by cultivating and compare with wild-type that at least a expression of gene speed has improved or the genetically modified microorganism that influences prepares the method for Threonine, wherein
Ch) compare with wild-type, the ratio expression activity of at least a endogenous expression of the present invention unit in microorganism increases, and the expression of native gene is regulated in wherein said endogenous expression unit, or
Dh) express the unit by the present invention or by having according to embodiment ch) the present invention of ratio expression activity of increase express the unit and regulate expression of gene in the microorganism, wherein said gene is allogenic for expressing the unit,
And wherein said gene is selected from: the nucleic acid of coding E.C. 2.7.2.4., the nucleic acid of coding aspartate-semialdehyde dehydrogenase, the nucleic acid of encoding glycerol aldehyde-3-phosphate dehydrogenase, the kinase whose nucleic acid of coding 3-phoshoglyceric acid, the nucleic acid of coding pyruvate carboxylase, the nucleic acid of coding triose-phosphate isomerase, the nucleic acid of coding homoserine kinase, the nucleic acid of coding threonine synthase, the coding Threonine is exported the nucleic acid of sub-carrier, the nucleic acid of coding glucose-6-phosphate dehydrogenase (G6PD), the nucleic acid of coding transaldolase, the nucleic acid of coding transketolase, the nucleic acid of coding oxysuccinic acid-quinone oxidoreductase, the nucleic acid of coding 6-Phosphogluconic dehydrogenase, the nucleic acid of coding Methionin output, the nucleic acid of the plain ligase enzyme of encoding human, the nucleic acid of coding Phosphoenolpyruvate carboxylase, the coding Threonine is discharged proteinic nucleic acid, encoding fructose-1, the nucleic acid of 6-diphosphatase, the proteinic nucleic acid of coding OpcA, the nucleic acid of coding 1-Phosphofructokinase, the nucleic acid of coding kinase whose nucleic acid of fructose-1, 6-diphosphate and coding homoserine dehydrogenase.
With regard to aforesaid method, by the present invention express the unit or by having according to embodiment ch) the present invention of ratio expression activity of increase express the unit and can realize in the following manner the adjusting of expression of gene in the microorganism:
Dh1) the present invention who one or more is had the ratio expression activity of increase under felicity condition expresses in the unit importing microbial genome, so that the present invention at the ratio expression activity that has increase under felicity condition that is imported expresses one or more expression of gene of carrying out under the unit control in these native genes, or
Dh2) one or more genes in these genes are imported in microbial genome, so that be to have under the felicity condition expression of carrying out one or more quiding genes under the endogenous expression unit control of the present invention of ratio expression activity of increase, or
Dh3) one or more nucleic acid constructs are imported in microorganisms, the present invention that described nucleic acid construct is contained in the ratio expression activity that has increase under the felicity condition express unit and functional connection one or more treat express nucleic acid.
Another preferred embodiment that is used to prepare the aforesaid method of Threonine comprises genetically modified microorganism, it compares at least a in the following activity that also has in addition increase with wild-type, described activity is selected from: the aspartokinase enzymic activity, the aspartate-semialdehyde dehydrogenase activity, the glyceraldehyde-3-phosphate dehydrogenase activity, the 3-phoshoglyceric acid kinase activity, the pyruvate carboxylase activity, the triose-phosphate isomerase activity, the threonine synthase activity, Threonine is exported sub-carrier activity, the transaldolase activity, TKA, the glucose-6-phosphate dehydrogenase (G6PD) activity, oxysuccinic acid-quinone oxidoreductase activity, the homoserine kinase activity, vitamin H ligase enzyme activity, the Phosphoenolpyruvate carboxylase activity, Threonine is discharged protein active, protein OpcA activity, the 1-Phosphofructokinase activity, the fructose-1, 6-diphosphate kinase activity, the fructose-1 activity, 6-Phosphogluconic dehydrogenase activity and homoserine dehydrogenase activity.
Another particularly preferred embodiment that is used to prepare the aforesaid method of Threonine comprises genetically modified microorganism, it compares at least a in the following activity that also has in addition reduction with wild-type, described activity is selected from: the threonine dehydra(ta)se activity, homoserine O-acetyltransferase activity, the serine hydroxymethylase activity, O-acetylhomoserine sulfhydrylase activity, meso diaminopimelic acid D-dehydrogenase activity, the phosphoenolpyruvate carboxykinase activity, the pyruvate oxidation enzymic activity, dihydrodipicolinic acid synthase's activity, dihydrodipicolinate reductase's activity, asparaginase activity, the aspartate decarboxylase activity, Methionin output is active, the acetolactate synthase activity, ketol-acid reduction isomerase activity, the branched-amino transferase active, actimide dependent form methionine synthases activity, non-actimide dependent form methionine synthases activity, dihydroxyl-sour dehydratase activity and diamino-pyridine formic acid decarboxylase.
Can have the nucleic acid of the present invention of promoter activity and/or the present invention by (but be not must) expresses the unit and causes at least a in above-mentioned activity that these increase in addition or reduce.
" activity " of term protein is meant the enzymic activity of respective egg white matter under the situation of enzyme, under other proteinic situation, as it is meant proteinic physiologically active under the situation of structural protein or translocator.
Enzyme can be a product with substrate conversion usually, or this step of converting of catalysis.
Therefore, " activity " of enzyme is meant in specified time the amount by the substrate of enzymatic conversion, or the amount of formed product.
Therefore, when specific activity increased mutually with wild-type, then comparing with wild-type in specified time was increased by the amount of the substrate that enzyme transformed or the amount of formed product.
For preamble and hereinafter described all activity, " activity " increase preferably reach " wild-type activity " at least 5%, preferably at least 20%, further preferably at least 50%, further preferably at least 100%, more preferably at least 300% even more preferably at least 500%, especially preferably at least 600%.
Therefore, when specific activity reduced mutually with wild-type, the amount of then comparing with wild-type in specified time by the amount of the substrate of enzymatic conversion or the product that forms reduced.
The activity that reduces is meant that preferably the functional meeting of this enzyme partly or basically suppresses or blocking-up fully based on the various kinds of cell biological mechanism in the microorganism.
Active reduction comprises the minimizing of enzyme quantity, lacks (promptly detecting the immunology detectability less than corresponding activity or shortage enzyme) basically fully until enzyme.Compare with wild-type, actively preferred in the microorganism reduce at least 5%, further preferably at least 20%, further preferably at least 50%, further preferred 100%.Particularly, " reduction " also be meant corresponding active completely losing.
Measure the activity of certain enzyme in genetically modified microorganism and the wild-type by currently known methods such as enzyme assay, and measure the increase or the reduction of enzymic activity thus.
For example, pyruvate carboxylase is meant that demonstration is converted into pyruvic acid in the protein of the enzymic activity of oxaloacetic acid.
Therefore, the pyruvate carboxylase activity is meant in specified time the amount of the pyruvic acid that is transformed by pyruvate carboxylase albumen or the amount of the oxaloacetic acid that forms.
Therefore, when comparing with wild-type that pyruvate carboxylase is active to be increased, then compare the amount of the pyruvic acid that in specified time, transforms or the amount of the oxaloacetic acid that forms increases by pyruvate carboxylase protein with wild-type.
The active this increase of pyruvate carboxylase be preferably the wild-type pyruvate carboxylase active at least 5%, further preferably at least 20%, further preferably at least 50%, further preferably at least 100%, more preferably at least 300% even more preferably at least 500%, particularly at least 600%.
In addition, for example the phosphoenolpyruvate carboxykinase activity is meant the enzymic activity of phosphoenolpyruvate carboxykinase.
Phosphoenolpyruvate carboxykinase is meant that demonstration is converted into oxaloacetic acid in the protein of the enzymic activity of phosphoenolpyruvic acid.
Therefore, the phosphoenolpyruvate carboxykinase activity is meant in specified time the amount of the oxaloacetic acid that is transformed by phosphoenolpyruvate carboxykinase albumen or the amount of the phosphoenolpyruvic acid that forms.
Therefore, when comparing with wild-type that phosphoenolpyruvate carboxykinase is active to be reduced, then compare the amount of the oxaloacetic acid that in specified time, transforms or the amount of the phosphoenolpyruvic acid that forms reduces by phosphoenolpyruvate carboxykinase protein with wild-type.
The active reduction of phosphoenolpyruvate carboxykinase comprises the minimizing of phosphoenolpyruvate carboxykinase quantity, lacks (the immunology detectability that promptly detects or shortage phosphoenolpyruvate carboxykinase active less than phosphoenolpyruvate carboxykinase) basically fully until phosphoenolpyruvate carboxykinase.Compare with wild-type, phosphoenolpyruvate carboxykinase is active preferred to reduce at least 5%, further preferably at least 20%, further preferably at least 50%, further preferred 100%.Particularly, " reduction " refer to also that phosphoenolpyruvate carboxykinase is active and completely lose.
Can increase activity in many ways extraly, for example by express and protein level on close and suppress regulation mechanism or by compare the genetic expression that increases the above-mentioned proteinic nucleic acid of coding with wild-type.
Similarly, comparing the genetic expression that increases the above-mentioned proteinic nucleic acid of coding with wild-type can carry out in many ways, for example induce this gene, perhaps by increasing promoter activity or increasing expression activity or pass through one or more gene copies are imported in the microorganisms as mentioned above by activator.
The genetic expression that increases the nucleic acid of coded protein also refers to handle according to the present invention the expression of the intrinsic endogenous protein of microorganism.
As mentioned above, this can be by for example changing promotor and/or the expression of gene unit sequence is realized.For example, can or insert dna sequence dna and carry out this change that causes genetic expression speed to improve by disappearance.
As mentioned above, can be by applying the expression that exogenous stimulation changes endogenous protein.This can pass through specific physiological condition, promptly uses allogenic material and carries out.
Those skilled in the art can realize the increase of genetic expression by other different methods (alone or in combination).Therefore, for example can increase the copy number of suitable gene, or with promotor and regulatory region or be positioned at the ribosome bind site sudden change of structure gene upstream.In addition, can in fermentation production process, increase expression by inducible promoter.Prolong the mRNA method of life and can improve expression equally.By preventing that proteoglycan degrading enzyme from equally also can strengthen enzymic activity.Gene or gene construct can be present in the plasmid by different copy numbers, or integrate in karyomit(e) and amplification.Alternatively, also can express by the composition and the crossing of culture processing realization genes involved that change substratum.
Those skilled in the art can be especially at people such as Martin (Biotechnology5,137-146 (1987)), people such as Guerrero (Genie138,35-41 (1994)), Tsuchiya and Morinaga (Bio/Technology6,428-430 (1988)), people such as Eikmanns (Gene102,93-98 (1991)), No. the 0472869th, European patent, United States Patent (USP) the 4th, 601, No. 893, Schwarzer and P ü hler (Biotechnology9,84-87 (1991)), people such as Reinscheid (Applied andEnvironmental Microbiology60,126-132 (1994)), people such as LaBarre (Journal ofBacteriology175,1001-1007 (1993)), patent application WO96/15246, people such as Malumbres (Gene134,15-24 (1993)), day present disclosure specification JP-A-10-229891, Jensen and Hammer (Biotechnology and Bioengineering58,191-195 (1998)), find guidance in Makrides (Microbiological Reviews60:512-538 (1996)) and well-known heredity and the molecular biology textbook to this.
In addition, except expression of gene or strengthening, eliminate harmful side reaction to biosynthetic products, especially the production of L-Methionin, L-methionine(Met) and L-Threonine is favourable (Nakayama: " Breeding of Amino Acid Producing Microorganisms ",: Overproduction of Microbial Products, Krumphanzl, Sikyta, Vanek (editor), Academic Press, London, Britain, 1982).
In a preferred embodiment, import the genetic expression increase of the nucleic acid that makes one of above-mentioned protein of coding in the microorganism by nucleic acid with at least a coding respective egg white matter.Nucleic acid imports and can carry out on karyomit(e) or outside the karyomit(e), i.e. a copy gene on increase by copy number on the karyomit(e) and/or the plasmid that duplicates in host microorganism.
The importing of nucleic acid (for example to comprise expression of nucleic acids box-like formula) is preferably carried out on karyomit(e), is particularly undertaken by above-mentioned SacB method.
In principle, can use any gene of one of above-mentioned protein of coding for this purpose.
The genomic nucleic acid sequence that comprises intron with the eucaryon source is an example, if host microorganism can not be expressed the respective egg white matter or can not make it express the respective egg white matter, and then preferred finished nucleotide sequence, for example corresponding cDNA of using.
The example of corresponding gene is listed in table 1 and the table 2.
Above-mentioned activity at least a preferred reduction microorganism by the following method:
● import at least a expression cassette that is used to induce the adopted RNA sequence of having of common inhibition or guarantees its expression;
● import at least a at corresponding gene, RNA or protein DNA binding factor or the protein bound factor or guarantee the expression cassette of its expression;
● import the nucleic acid sequence of at least a RNA of causing degraded or guarantee the expression cassette of its expression,
● import at least a construct that causes that gene function is lost, wherein in described construct, insert, lack, be inverted or suddenly change to produce terminator codon and make and read the position of frameing shift by for example in gene, producing.May and preferably be inserted in the purpose target gene or the sequence-specific nuclease of target gene is produced and knock out mutant by implanting needle by the homologous recombination target;
● import the expression unit that has the promotor that reduces promoter activity or have the reduction expression activity.
Those skilled in the art recognizes, also can use other method to reduce its activity or function in category of the present invention.For example, import proteinic dominant variant or guarantee that the expression cassette of its expression also is favourable.
In addition, each in these methods may cause that all protein quantity, mRNA quantity and/or protein active reduce.Also can expect being used in combination of these methods.Other method is known to those skilled in the art, and its transhipment, inhibition rrna that comprises prevention or the processing of arrestin matter, protein or its mRNA adheres to, suppresses the enzyme of RNA montage, induced degradation RNA and/or suppresses extended translation or termination.
In the inventive method that is used for producing biosynthetic products, preferably after the step of culturing gene modified microorganism from microorganism and/or fermention medium the separating bio synthetic product.These steps can be carried out and/or preferably carry out after culturing step simultaneously.
Cultivate genetically modified microorganism of the present invention in available batch process (batch culture) or fed-batch or the repeated fed-batch method, produce biosynthetic products, particularly L-Methionin, L-methionine(Met) and L-Threonine with continuous or interruption.At Chmiel (Bioproze β technik 1.Einf ü hrung in dieBioverfahrenstechnik (Gustav Fischer Verlag, Stuttgart, 1991) textbook) or Storhas (Bioreaktoren und periphere Einrichtungen (Vieweg Verlag, Brunswick/Wiesbaden, 1994) find known cultural method general introduction in the textbook).
Substratum to be used must satisfy the requirement of each bacterial strain in mode suitably.In " the Manual of Methods for General Bacteriology " of AAM (Washington D.C., the U.S., 1981) handbook, the substratum that is used for multiple microorganism has been described.
According to the present invention, these spendable substratum comprise one or more carbon sources, nitrogenous source, inorganic salt, VITAMIN and/or trace elements usually.
Preferred carbon source is for example monose, disaccharides or a polysaccharide of sugar.The example of good sources of carbon is glucose, fructose, seminose, semi-lactosi, ribose, sorbose, ribulose, lactose, maltose, sucrose, raffinose, starch or Mierocrystalline cellulose.Also can be through sugar being placed substratum such as the complex compound of molasses or other by product of sugar refining.The mixture that adds several kinds of carbon source also is useful.Other possible carbon source is: oily and fatty, and for example soybean oil, Oleum Helianthi, peanut oil and coconut fat; Lipid acid, for example palmitinic acid, stearic acid or linolic acid; Alcohol, for example glycerine, methyl alcohol or ethanol and organic acid, for example acetate or lactic acid.
Nitrogenous source is generally the organic or inorganic nitrogen compound or contains the material of these compounds.The example of nitrogenous source comprises ammonia or such as the ammonium salt of ammonium sulfate, ammonium chloride, ammonium phosphate, volatile salt or ammonium nitrate, nitrate, urea, amino acid or such as the compound nitrogen source of corn steep liquor, soyflour, soybean protein, yeast extract, meat extract and other material.Nitrogenous source can use separately or use as mixture.
Can be present in muriate, phosphoric acid salt or vitriol that inorganic salt compound in the substratum comprises calcium, magnesium, sodium, cobalt, molybdenum, potassium, manganese, zinc, copper and iron.
In order to produce fine chemicals, especially methionine(Met), may use mineral compound for example vitriol, sulphite, hyposulfite, four vitriol, thiosulphate, sulfide as the sulphur source, but also can use organosulfur compound for example mercaptan and thio-alcohol as the sulphur source.
Can use phosphoric acid, potassium primary phosphate or dipotassium hydrogen phosphate or contain sodium salt accordingly as the phosphorus source.
Sequestrant can be added substratum so that keep the solution metal ion.Shi Yi sequestrant comprises dihydroxyl phenols such as catechol or Protocatechuic Acid and organic acid such as citric acid especially.
According to the present invention, employed fermention medium also comprises other somatomedin such as VITAMIN or growth stimulant usually, and it comprises biological example element, riboflavin, thiamines, folic acid, nicotinic acid, pantothenic acid and pyridoxol.Somatomedin and salt are usually from the complicated ingredient of substratum for example yeast extract, molasses, corn steep liquor etc.Also suitable precursor can be added in the substratum.The accurate composition of compound is decided on concrete experiment to a great extent in the substratum, and will determine separately for each particular case.Can be to the information that substratum is optimized from textbook " Applied Microbiol.Physiology; APractical Approach " (editor P.M.Rhodes, P.F.Stanbury, IRL Press (1997) 53-73 pages or leaves, ISBN 0 19 9635773) obtain.Also can buy growth medium from goods providers, for example Standard 1 (Merck) or BHI (brain heart leach liquor, DIFCO).
All medium components are sterilized by heating (1.5 crust and 121 ℃ following 20 minutes) or sterile filtration.Composition can be sterilized together or separately sterilization optionally.All medium components can begin promptly to exist or optional add continuously or in batches in cultivation.
The temperature of substratum between 15 ℃ and 45 ℃, preferably at 25 ℃ and 40 ℃, and keeps constant or variation usually in experimentation.The pH value of substratum should be in 5 to 8.5 the scope, is preferably about 7.0.Can control the pH value of cultivating usefulness by adding in the training period such as the basic cpd of sodium hydroxide, potassium hydroxide, ammonia or ammoniacal liquor or such as phosphoric acid or vitriolic acidic cpd.Can come control foam to produce by for example using the foam preventer of fatty acid polyglycol diethyl alcohol ester.By add the suitable material with selective action in substratum, for example antibiosis is usually kept the stability of plasmid.Keep aerobic condition by importing oxygen or oxygen-containing gas mixture (for example ambient air) in substratum.The temperature of culture is generally 20 ℃ to 45 ℃.The formation that cultivation continues to proceed to the purpose product reaches maximum.Usually in 10 hours to 160 hours, reach this target.
The dry matter content of the fermenting broth that obtains in this way is generally 7.5 to 25% (by weight).
In addition, at least in fermentation latter stage, but specifically be surpass fermentation time at least 30% in to carry out sugared restricted fermentation also be favourable.This means that available sugared concentration in the fermention medium during this period of time remains on 0 to 3g/l or reduction.
According to the physico of want biosynthetic products and biosynthetic by product, separating bio synthetic product from fermenting broth and/or microorganism in a manner known way.
For example, can follow further processing fermenting broth.Depend on the needs, available separation method is for example centrifugal, the combination of filtration, decant or these methods is all or part of from fermenting broth removes biomass or it is all remained in wherein.
Then concentrate fermenting broth with currently known methods, for example by means of rotatory evaporator, thin-film evaporator, falling film evaporator is by reverse osmosis or pass through nanofiltration.Handle this spissated fermenting broth by lyophilize, spraying drying, mist projection granulating or other method then.
Yet, also may be further purified biosynthetic products, especially be L-Methionin, L-methionine(Met) and L-Threonine.For this purpose, after removing biomass, use suitable resin that the meat soup that contains product is carried out chromatography, wherein purpose product or impurity are stranded on the chromatographic resin whole or in part.If need, then can use identical or different chromatographic resin to repeat these chromatographic step.Those skilled in the art is proficient in the selection and the most effective use thereof of suitable chromatographic resin.The product of purifying can concentrate and be stored under the temperature of product stability maximum by filtration or ultrafiltration.
Biosynthetic products can have various ways, for example the form of its salt or ester.
Available prior art is determined institute's isolated compound and purity.These prior aries comprise high performance liquid chromatography (HPLC) (HPLC), spectrography, staining, thin layer chromatography, NIRS, enzyme assay or microbioassay.These analytical procedures are summarized in: people such as Patek (1994) Appl.Environ.Microbiol.60:133-140; People (1998) Bioprocess Engineer.19:67-70 such as people such as Malakhova (1996) Biotekhnologiya 11 27-32 and Schmidt; Ulmann ' sEncyclopedia of Industrial Chemistry (1996) A27 volume, VCH:Weinheim, 89-90 page or leaf, 521-540 page or leaf, 540-547 page or leaf, 559-566 page or leaf, 575-581 page or leaf and 581-587 page or leaf; Michal, G (1999) Biochemical Pathways:An Atlas of Biochemistryand Molecular Biology, John Wiley and Sons; Fallon, people such as A. (1987) Applications of HPLC in Biochemistry: Laboratory Techniques inBiochemistry and Molecular Biology, in the 17th volume.
Embodiment
Now the present invention is described in more detail by following indefiniteness embodiment:
Embodiment 1: the structure of carrier pSK1Cat
Shuttle vectors pMT1 (Follettie et al. (1993) J.Bacteriol.175:4096-4103) with restriction enzyme XhoI and BamHI digestion, is handled and reconnects with the Klenow fragment subsequently.Gained plasmid called after pMT1-del.Carrier pMT1-del is digested with restriction enzyme BgIII and XbaI.2.5kb fragment comprises from the pSR1 ori of Corynebacterium glutamicum and is connected to 2kb plasposonpTnMod-Okm (Dennis and Zylstra (1998) Appl.Environ.Microbiol.64:2710-2715), it is equally with BgIII and XbaI cutting.Gained carrier called after pSK1.The fragment of plasposon pTnMod-Okm has from colibacillary pMB1 replication orgin and kalamycin resistance mark (Tn903).By polymerase chain reaction (PCR) according to as Innis et al. (1990) PCR Protokols, A Guide to Methods and Applications, the standard method of describing among the AcademicPress, by Oligonucleolide primers A (SEQ.ID.NO.4) and B (SEQ.ID.NO.5), use carrier PKK232-8 (SEQ.ID.NO.3) to be not activated the cat gene of son as template amplification.Carrier and insertion fragment are connected to carrier pSK1 with this PCR product after digesting with restriction enzyme BgIII and KpnI.This plasmid called after pSK1Cat (Fig. 1).
Oligonucleolide primers A SEQ.ID.NO.4
5’-GGAAGATCTTTCAAGAATTCCCAGGCA-3’
Oligonucleolide primers B SEQ.ID.NO.5
5’-GGGGTACCTACCGTATCTGTGGGGGG-3’
Embodiment 2 plasmid pSK1 P
TacStructure
Plasmid pKK223-3SEQ.ID.NO.6 comprises tac promotor (P
Tac).This promotor is separated by digesting with restriction enzyme BamHI, and this fragment cloning is gone among the linearizing carrier pSK1CatSEQ of the BamHI-ID.This plasmid called after pSK1P
Tac(Fig. 2).
Embodiment 3 P
1-34(SEQ.ID.NO.1) clone
Use the chromosomal DNA of the method for Eikmanns et al. (1994) Microbiology 140:1817-1828, and partly digest with restriction enzyme Sau3AI subsequently from the cellular segregation Corynebacterium glutamicum AS019E12 of exponential phase in evening.Gained fragment (size is 0.4-1.0kb) is connected to and uses among the linearizing carrier pSK1Cat of restriction enzyme BamHI.By electroporation, the method for use Follettie et al. (1993) J.Bacteriol.175:4096-4103 will connect mixture and be transformed into Corynebacterium glutamicum AS019E12.With cell inoculation on the flat board that comprises 5 μ g/ml paraxin.Separation is also analyzed the plasmid that is grown in the single bacterium colony on these flat boards.A kind of this type of plasmid is pSK1CatP
1-34, it comprises promotor P
1-34(SEQ.ID.NO.1).This promotor is positioned at the upstream of gene of the protein (may be permease) of coding supposition.The insertion clip size is 735bp.Among the embodiment 4 Corynebacterium glutamicum AS019E12 to the resistance of paraxin
The cell that only comprises the Corynebacterium glutamicum of plasmid pSK1Cat (Fig. 1) can not upward grown under the chloramphenicol concentration of 5 μ g/ml at MB flat board (Follettie et al. (1993) J.Bacteriol.175:4096-4103) and MCGC flat board (von der Osten et al. (1989) Biotechnol.Lett.11:11-16) under 30 ℃.The cat gene is not expressed.Compare, comprise plasmid pSK1CatP
TacThe cell of Corynebacterium glutamicum (Fig. 2) will be grown under the chloramphenicol concentration of 40 μ g/ml on MB and MCGC flat board.Under greater than the chloramphenicol concentration of 40 μ g/ml growth only very a little less than, almost do not observe.Comprise plasmid pSK1Cat P
1-34Cell can on MB and MCGC flat board, under chloramphenicol concentration, grow less than 40 μ g.
In embodiment 5 intestinal bacteria to the resistance of paraxin
Comprise plasmid pSK1CatP
TacColibacillary cell (Fig. 2) is (Sambrook et al. (1989) Molecular cloning-A laboratory manual.ColdSpring Harbor Laboratory, 2 on the LB flat board
NdEd., Cold Spring Harbor N.Y.) grows under the chloramphenicol concentration of 400 μ g/ml.Can not observe under 600 μ g/ml chloramphenicol concentrations and grow.Comprise plasmid pSK1CatP
1-34Cell can under the chloramphenicol concentration of 600 μ g, grow on the LB flat board.
Embodiment 6 is by CAT (CAT) determination of activity promotor intensity
The CAT that measures Corynebacterium glutamicum AS019E12 is active so that determine promotor P
1-34(SEQ.ID.NO.1) relative intensity.For this reason, the method according to Jetten and Sinsky (1993) FEMSMicrobiol.Lett.111:183-188 prepares crude extract.Method by Shaw et al (1993) Methods Enzymol.43:737-755 is measured E.C. 2.3.1.28 (CAT) activity.Reaction mixture comprises 100mM Tris
*HCl pH7.5,1mM DTNB, 0.1mM acetyl-CoA, the enzyme of 0.25mM paraxin and appropriate amount.The change of measurement optical density(OD) under the 412nm wavelength.Use Bradford method (1976) Anal.Biochem.72:248-254 analysing protein concentration.
The result shows in following table:
Promotor before the cat gene | CAT activity (μ mol/mg *min) |
Do not have | 0 |
P tac | 8.8 |
P 1-34 | 5.1 |
Figure:
Fig. 1 has shown the plasmid figure (A) of pSK1Cat and the nucleotide sequence (B) of BamHl cloning site.The zone that the sequence representative of the band underscore among the B is used to produce the order-checking oligonucleotide.Initiator codon and BamHl cloning site have been pointed out.
Fig. 2 has shown pSK1P
TacThe part of nucleotide sequence.Promotor P
TacShow with italic.-35 and-10 districts, RBS and the initiator codon of cat gene have also been pointed out.
Sequence table
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<213〉Corynebacterium glutamicum (Corynebacterium glutamicum)
<220>
<221〉promotor
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tgaatcatcc ttaaccgtcc agaaatactg gtgattccca tgctaatccg cgaaaatggc 60
acttcaacag ccatatactt taaacaacac aaatgatgca agactgatac cgggatgtga 120
taggagcgca ccacatgggg ttggaattag cagctagcgg gtggggcatc ctcatcgcag 180
gcgccgccgt agccggatgg atcgacgcag taatcggcgg tggcggactc gtcctcatcc 240
cgctgatcct cgcggtcatg ccgcaactcg cacctgtgac agcgctggcc tccaacaaac 300
tggcagccgt caccggcacg gcatcggcgg cattcaccct ggtcaggcgc gtcaaacccg 360
acaaaaaact gcttgcgctc tacgttctgg tggcagctgt gtgctccggt gcaggcgccc 420
tggctgcgag tctcattgac aaacaaatca tgcgaccgct gatcatcgtg ttgatgctgg 480
tcgttggcct gatcgtggtg ttcaaaccaa acttcggaac cggcgaaagc aaagccctgc 540
ccaccggatg gaaacgctgg gccgccatcg ttgcagtcgg actcatcgca gcctacgacg 600
gcatcttcgg acccggaacc ggcatgttcc tcatcatggc gttcaccgca ctgctctccc 660
aaaatttcct gtcctccgca gccatggcga aggtcgtaaa caccgcaaca aacctgggtg 720
cgctaattgt attca 735
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tgaatcatcc ttaaccgtcc agaaatactg gtgattccca tgctaatccg cgaaaatggc 60
acttcaacag ccatatactt taaacaacac aaatgatgca agactgatac cgggatgtga 120
taggagcgca ccacatgggg ttggaattag cagctagcgg gtggggcatc ctcatcgcag 180
gcgccgccgt agccggatgg atcgacgcag taatcggcgg tggcggactc gtcctcatcc 240
cgctgatcct cgcggtcatg ccgcaactcg cacctgtgac agcgctggcc tccaacaaac 300
tggcagccgt caccggcacg gcatcggcgg cattcaccct ggtcaggcgc gtcaaacccg 360
acaaaaaact gcttgcgctc tacgttctgg tggcagctgt gtgctccggt gcaggcgccc 420
tggctgcgag tctcattgac aaacaaatca tgcgaccgct gatcatcgtg ttgatgctgg 480
tcgttggcct gatcgtggtg ttcaaaccaa acttcggaac cggcgaaagc aaagccctgc 540
ccaccggatg gaaacgctgg gccgccatcg ttgcagtcgg actcatcgca gcctacgacg 600
gcatcttcgg acccggaacc ggcatgttcc tcatcatggc gttcaccgca ctgctctccc 660
aaaatttcct gtcctccgca gccatggcga aggtcgtaaa caccgcaaca aacctgggtg 720
cgctaattgt attcatcatc ggcggccaca tgtggtggac cctaggactc gtgctggcag 780
tcgccaatgt cgcaggcgca caactcggtg cccgaacggt gcttggtggc ggtaccaggc 840
taattagata cgcactacta accctggttg tcgtcatgag cgtctacctc acctggcaac 900
aaatccaagg aatgtagata agtcggggca aactctaaga aatcatcctg gttt 954
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<213〉artificial sequence
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ttcccaggca tcaaataaaa cgaaaggctc agtcgaaaga ctgggccttt cgttttatct 60
gttgtttgtc ggtgaacgct ctcctgagta ggacaaatcc gccgggagcg gatttgaacg 120
ttgcgaagca acggcccgga gggtggcggg caggacgccc gccataaact gccagggaat 180
tcccggggat ccgtcgacct gcagccaagc ttgagtagga caaatccgcc gagcttcgac 240
gagattttca ggagctaagg aagctaaaat ggagaaaaaa atcactggat ataccaccgt 300
tgatatatcc caatcgcatc gtaaagaaca ttttgaggca tttcagtcag ttgctcaatg 360
tacctataac cagaccgttc agctggatat tacggccttt ttaaagaccg taaagaaaaa 420
taagcacaag ttttatccgg cctttattca cattcttgcc cgcctgatga atgctcatcc 480
ggaattccgt atggcaatga aagacggtga gctggtgata tgggatagtg ttcacccttg 540
ttacaccgtt ttccatgagc aaactgaaac gttttcatcg ctctggagtg aataccacga 600
cgatttccgg cagtttctac acatatattc gcaagatgtg gcgtgttacg gtgaaaacct 660
ggcctatttc cctaaagggt ttattgagaa tatgtttttc gtctcagcca atccctgggt 720
gagtttcacc agttttgatt taaacgtggc caatatggac aacttcttcg cccccgtttt 780
caccatgggc aaatattata cgcaaggcga caaggtgctg atgccgctgg cgattcaggt 840
tcatcatgcc gtctgtgatg gcttccatgt cggcagaatg cttaatgaat tacaacagta 900
ctgcgatgag tggcagggcg gggcgtaatt tttttaaggc agttattggt gcccttaaac 960
gcctggtgct acgcctgaat aagtgataat aagcggatga atggcagaaa ttcgtcgagg 1020
cggcacctcg ctaacggatt caccactcca agaattggag ccaatcaatt cttgcggaga 1080
actgtgaatg cgcaaaccaa cccttggcag aacatatcca tcgcgtccgc catctccagc 1140
agccgcacgc ggcgcatctc ggctgttttg gcggatgaga gaagattttc agcctgatac 1200
agattaaatc agaacgcaga agcggtctga taaaacagaa tttgcctggc ggcagtagcg 1260
cggtggtccc acctgacccc atgccgaact cagaagtgaa acgccgtagc gccgatggta 1320
gtgtggggtc tccccatgcg agagtaggga actgccaggc atcaaataaa acgaaaggct 1380
cagtcgaaag actgggcctt tcgttttatc tgttgtttgt cggtgaacgc tctcctgagt 1440
aggacaaatc cgccgggagc ggatttgaac gttgcgaagc aacggcccgg agggtggcgg 1500
gcaggacgcc cgccataaac tgccaggcat caaattaagc agaaggccat cctgacggat 1560
ggcctttttg cgtttctaca aactcttcct gtcgtcatat ctacaagcca tccccccaca 1620
gatacggtaa actagcctcg tttttgcatc aggaaagcag ctgttttggc ggatgagaga 1680
agattttcag cctgatacag attaaatcag aacgcagaag cggtctgata aaacagaatt 1740
tgcctggcgg cagtagcgcg gtggtcccac ctgaccccat gccgaactca gaagtgaaac 1800
gccgtagcgc cgatggtagt gtggggtctc cccatgcgag agtagggaac tgccaggcat 1860
caaataaaac gaaaggctca gtcgaaagac tgggcctttc gttttatctg ttgtttgtcg 1920
gtgaacgctc tcctgagtag gacaaatccg ccgggagcgg atttgaacgt tgcgaagcaa 1980
cggcccggag ggtggcgggc aggacgcccg ccataaactg ccaggcatca aattaagcag 2040
aaggccatcc tgacggatgg cctttttgcg tttctacaaa ctcttcctgt cgtcatatct 2100
acaagccatc cccccacaga tacggtaaac tagcctcgtt tttgcatcag gaaagcagtc 2160
gggcagcgtt gggtcctggc cacgggtgcg catgatcgtg ctcctgtcgt tgaggacccg 2220
gctaggctgg cggggttgcc ttactggtta gcagaatgaa tcaccgatac gcgagcgaac 2280
gtgaagcgac tgctgctgca aaacgtctgc gacctgagca acaacatgaa tggtcttcgg 2340
tttccgtgtt tcgtaaagtc tggaaacgcg gaagtcagcg ccctgcacca ttatgttccg 2400
gatctgcatc gcaggatgct gctggctacc ctgtggaaca cctacatctg tattaacgaa 2460
gcgctggcat tgaccctgag tgatttttct ctggtcccgc cgcatccata ccgccagttg 2520
tttaccctca caacgttcca gtaaccgggc atgttcatca tcagtaaccc gtatcgtgag 2580
catcctctct cgtttcatcg gtatcattac ccccatgaac agaaatcccc cttacacgga 2640
ggcatcagtg accaaacagg aaaaaaccgc ccttaacatg gcccgcttta tcagaagcca 2700
gacattaacg cttctggaga aactcaacga gctggacgcg gatgaacagg cagacatctg 2760
tgaatcgctt cacgaccacg ctgatgagct ttaccgcagc tgcctcgcgc gtttcggtga 2820
tgacggtgaa aacctctgac acatgcagct cccggagacg gtcacagctt gtctgtaagc 2880
ggatgccggg agcagacaag cccgtcaggg cgcgtcagcg ggtgttggcg ggtgtcgggg 2940
cgcagccatg acccagtcac gtagcgatag cggagtgtat actggcttaa ctatgcggca 3000
tcagagcaga ttgtactgag agtgcaccat atgcggtgtg aaataccgca cagatgcgta 3060
aggagaaaat accgcatcag gcgctcttcc gcttcctcgc tcactgactc gctgcgctcg 3120
gtcgttcggc tgcggcgagc ggtatcagct cactcaaagg cggtaatacg gttatccaca 3180
gaatcagggg ataacgcagg aaagaacatg tgagcaaaag gccagcaaaa ggccaggaac 3240
cgtaaaaagg ccgcgttgct ggcgtttttc cataggctcc gcccccctga cgagcatcac 3300
aaaaatcgac gctcaagtca gaggtggcga aacccgacag gactataaag ataccaggcg 3360
tttccccctg gaagctccct cgtgcgctct cctgttccga ccctgccgct taccggatac 3420
ctgtccgcct ttctcccttc gggaagcgtg gcgctttctc aatgctcacg ctgtaggtat 3480
ctcagttcgg tgtaggtcgt tcgctccaag ctgggctgtg tgcacgaacc ccccgttcag 3540
cccgaccgct gcgccttatc cggtaactat cgtcttgagt ccaacccggt aagacacgac 3600
ttatcgccac tggcagcagc cactggtaac aggattagca gagcgaggta tgtaggcggt 3660
gctacagagt tcttgaagtg gtggcctaac tacggctaca ctagaaggac agtatttggt 3720
atctgcgctc tgctgaagcc agttaccttc ggaaaaagag ttggtagctc ttgatccggc 3780
aaacaaacca ccgctggtag cggtggtttt tttgtttgca agcagcagat tacgcgcaga 3840
aaaaaaggat ctcaagaaga tcctttgatc ttttctacgg ggtctgacgc tcagtggaac 3900
gaaaactcac gttaagggat tttggtcatg agattatcaa aaaggatctt cacctagatc 3960
cttttaaatt aaaaatgaag ttttaaatca atctaaagta tatatgagta aacttggtct 4020
gacagttacc aatgcttaat cagtgaggca cctatctcag cgatctgtct atttcgttca 4080
tccatagttg cctgactccc cgtcgtgtag ataactacga tacgggaggg cttaccatct 4140
ggccccagtg ctgcaatgat accgcgagac ccacgctcac cggctccaga tttatcagca 4200
ataaaccagc cagccggaag ggccgagcgc agaagtggtc ctgcaacttt atccgcctcc 4260
atccagtcta ttaattgttg ccgggaagct agagtaagta gttcgccagt taatagtttg 4320
cgcaacgttg ttgccattgc tgcaggcatc gtggtgtcac gctcgtcgtt tggtatggct 4380
tcattcagct ccggttccca acgatcaagg cgagttacat gatcccccat gttgtgcaaa 4440
aaagcggtta gctccttcgg tcctccgatc gttgtcagaa gtaagttggc cgcagtgtta 4500
tcactcatgg ttatggcagc actgcataat tctcttactg tcatgccatc cgtaagatgc 4560
ttttctgtga ctggtgagta ctcaaccaag tcattctgag aatagtgtat gcggcgaccg 4620
agttgctctt gcccggcgtc aacacgggat aataccgcgc cacatagcag aactttaaaa 4680
gtgctcatca ttggaaaacg ttcttcgggg cgaaaactct caaggatctt accgctgttg 4740
agatccagtt cgatgtaacc cactcgtgca cccaactgat cttcagcatc ttttactttc 4800
accagcgttt ctgggtgagc aaaaacagga aggcaaaatg ccgcaaaaaa gggaataagg 4860
gcgacacgga aatgttgaat actcatactc ttcctttttc aatattattg aagcatttat 4920
cagggttatt gtctcatgag cggatacata tttgaatgta tttagaaaaa taaacaaata 4980
ggggttccgc gcacatttcc ccgaaaagtg ccacctgacg tctaagaaac cattattatc 5040
atgacattaa cctataaaaa taggcgtatc acgaggccct ttcgtcttca agaa 5094
<210>4
<211>27
<212>DNA
<213〉artificial sequence
<220>
<221〉primer
<222>(1)..(27)
<223〉primer
<400>4
ggaagatctt tcaagaattc ccaggca 27
<210>5
<211>26
<212>DNA
<213〉artificial sequence
<220>
<221〉primer
<222>(1)..(26)
<223〉primer
<400>5
ggggtaccta ccgtatctgt gggggg 26
<210>6
<211>4991
<212>DNA
<213〉artificial sequence
<220>
<221>misc_feature
<222>(1)..(4991)
<223〉plasmid
<400>6
ttctgtttcc tgtgtgaaat tgttatccgc tcacaattcc acacattata cgagccgatg 60
attaattgtc aacagctcat ttcagaatat ttgccagaac cgttatgatg tcggcgcaaa 120
aaacattatc cagaacggga gtgcgccttg agcgacacga attatgcagt gatttacgac 180
ctgcacagcc ataccacagc ttccgatggc tgcctgacgc cagaagcatt ggtgcaccgt 240
gcagtcgata agctccggat cctctacgcc ggacgcatcg tggccggcat caccggcgcc 300
acaggtgcgg ttgctggcgc ctatatcgcc gacatcaccg atggggaaga tcgggctcgc 360
cacttcgggc tcatgagcgc ttgtttcggc gtgggtatgg tggcaggccc cgtggccggg 420
ggactgttgg gcgccatctc cttgcatgca gatctagcgg cgcattaagc gcggcgggtg 480
tggtggttac gcgcagcgtg accgctacac ttgccagcgc cctagcgccc gctcctttcg 540
ctttcttccc ttcctttctc gccacgttcg ccggctttcc ccgtcaagct ctaaatcggg 600
ggctcccttt agggttccga tttagtgctt tacggcacct cgaccccaaa aaacttgatt 660
tgggtgatgg ttcacgtagt gggccatcgc cctgatagac ggtttttcgc cctttgacgt 720
tggagtccac gttctttaat agtggactct tgttccaaac tggaacaaca ctcaacccta 780
tctcgggcta ttcttttgat ttataaggga ttttgccgat ttcggactag accaccattc 840
cttgcggcgg cggtgctcaa cggcctcaac ctactactgg gctgcttcct aatgcaggag 900
tcgcataagg gagagcgtcg accgatgccc ttgagagcct tcaacccagt cagctccttc 960
cggtgggcgc ggggcatgac tatcgtcgcc gcacttatga ctgtcttctt tatcatgcaa 1020
ctcgtaggac aggtgccggc agcgctctgg gtcattttcg gcgaggaccg ctttcgctgg 1080
agcgcgacga tgatcggcct gtcgcttgcg gtattcggaa tcttgcacgc cctcgctcaa 1140
gccttcgtca ctggtcccgc caccaaacgt ttcggcgaga agcaggccat tatcgccggc 1200
atggcggccg acgcgctggg ctacgtcttg ctggcgttcg cgacgcgagg ctggatggcc 1260
ttccccatta tgattcttct cgcttccggc ggcatcggga tgcccgcgtt gcaggccatg 1320
ctgtccaggc aggtagatga cgaccatcag ggacagcttc aaggatcgct cgcggctctt 1380
accagcctaa cttcgatcac tggaccgctg atcgtcacgg cgatttatgc cgcctcggcg 1440
agcacatgga acgggttggc atggattgta ggcgccgccc tataccttgt ctgcctcccc 1500
gcgttgcgtc gcggtgcatg gagccgggcc acctcgacct gaatggaagc cggcggcacc 1560
tcgctaacgg attcaccact ccaagaattg gagccaatca attcttgcgg agaactgtga 1620
atgcgcaaac caacccttgg cagaacatat ccatcgcgtc cgccatctcc agcagccgca 1680
cgcggcgcat ctcgggcagc gttgggtcct ggccacgggt gcgcatgatc gtgctcctgt 1740
cgttgaggac ccggctaggc tggcggggtt gccttactgg ttagcagaat gaatcaccga 1800
tacgcgagcg aacgtgaagc gactgctgct gcaaaacgtc tgcgacctga gcaacaacat 1860
gaatggtctt cggtttccgt gtttcgtaaa gtctggaaac gcggaagtca gcgccctgca 1920
ccattatgtt ccggatctgc atcgcaggat gctgctggct accctgtgga acacctacat 1980
ctgtattaac gaagcgctgg cattgaccct gagtgatttt tctctggtcc cgccgcatcc 2040
ataccgccag ttgtttaccc tcacaacgtt ccagtaaccg ggcatgttca tcatcagtaa 2100
cccgtatcgt gagcatcctc tctcgtttca tcggtatcat tacccccatg aacagaaatt 2160
cccccttaca cggaggcatc aagtgaccaa acaggaaaaa accgccctta acatggcccg 2220
ctttatcaga agccagacat taacgcttct ggagaaactc aacgagctgg acgcggatga 2280
acaggcagac atctgtgaat cgcttcacga ccacgctgat gagctttacc gcagctgcct 2340
cgcgcgtttc ggtgatgacg gtgaaaacct ctgacacatg cagctcccgg agacggtcac 2400
agcttgtctg taagcggatg ccgggagcag acaagcccgt cagggcgcgt cagcgggtgt 2460
tggcgggtgt cggggcgcag ccatgaccca gtcacgtagc gatagcggag tgtatactgg 2520
cttaactatg cggcatcaga gcagattgta ctgagagtgc accatatgcg gtgtgaaata 2580
ccgcacagat gcgtaaggag aaaataccgc atcaggcgct cttccgcttc ctcgctcact 2640
gactcgctgc gctcggtcgt tcggctgcgg cgagcggtat cagctcactc aaaggcggta 2700
atacggttat ccacagaatc aggggataac gcaggaaaga acatgtgagc aaaaggccag 2760
caaaaggcca ggaaccgtaa aaaggccgcg ttgctggcgt ttttccatag gctccgcccc 2820
cctgacgagc atcacaaaaa tcgacgctca agtcagaggt ggcgaaaccc gacaggacta 2880
taaagatacc aggcgtttcc ccctggaagc tccctcgtgc gctctcctgt tccgaccctg 2940
ccgcttaccg gatacctgtc cgcctttctc ccttcgggaa gcgtggcgct ttctcatagc 3000
tcacgctgta ggtatctcag ttcggtgtag gtcgttcgct ccaagctggg ctgtgtgcac 3060
gaaccccccg ttcagcccga ccgctgcgcc ttatccggta actatcgtct tgagtccaac 3120
ccggtaagac acgacttatc gccactggca gcagccactg gtaacaggat tagcagagcg 3180
aggtatgtag gcggtgctac agagttcttg aagtggtggc ctaactacgg ctacactaga 3240
aggacagtat ttggtatctg cgctctgctg aagccagtta ccttcggaaa aagagttggt 3300
agctcttgat ccggcaaaca aaccaccgct ggtagcggtg gtttttttgt ttgcaagcag 3360
cagattacgc gcagaaaaaa aggatctcaa gaagatcctt tgatcttttc tacggggtct 3420
gacgctcagt ggaacgaaaa ctcacgttaa gggattttgg tcatgagatt atcaaaaagg 3480
atcttcacct agatcctttt aaattaaaaa tgaagtttta aatcaatcta aagtatatat 3540
gagtaaactt ggtctgacag ttaccaatgc ttaatcagtg aggcacctat ctcagcgatc 3600
tgtctatttc gttcatccat agttgcctga ctccccgtcg tgtagataac tacgatacgg 3660
gagggcttac catctggccc cagtgctgca atgataccgc gagacccacg ctcaccggct 3720
ccagatttat cagcaataaa ccagccagcc ggaagggccg agcgcagaag tggtcctgca 3780
actttatccg cctccatcca gtctattaat tgttgccggg aagctagagt aagtagttcg 3840
ccagttaata gtttgcgcaa cgttgttgcc attgctacag gcatcgtggt gtcacgctcg 3900
tcgtttggta tggcttcatt cagctccggt tcccaacgat caaggcgagt tacatgatcc 3960
cccatgttgt gcaaaaaagc ggttagctcc ttcggtcctc cgatcgttgt cagaagtaag 4020
ttggccgcag tgttatcact catggttatg gcagcactgc ataattctct tactgtcatg 4080
ccatccgtaa gatgcttttc tgtgactggt gagtactcaa ccaagtcatt ctgagaatag 4140
tgtatgcggc gaccgagttg ctcttgcccg gcgtcaacac gggataatac cgcgccacat 4200
agcagaactt taaaagtgct catcattgga aaacgttctt cggggcgaaa actctcaagg 4260
atcttaccgc tgttgagatc cagttcgatg taacccactc gtgcacccaa ctgatcttca 4320
gcatctttta ctttcaccag cgtttctggg tgagcaaaaa caggaaggca aaatgccgca 4380
aaaaagggaa taagggcgac acggaaatgt tgaatactca tactcttcct ttttcaatat 4440
tattgaagca tttatcaggg ttattgtctc atgagcggat acatatttga atgtatttag 4500
aaaaataaac aaaagagttt gtagaaacgc aaaaaggcca tccgtcagga tggccttctg 4560
cttaatttga tgcctggcag tttatggcgg gcgtcctgcc cgccaccctc cgggccgttg 4620
cttcgcaacg ttcaaatccg ctcccggcgg atttgtccta ctcaggagag cgttcaccga 4680
caaacaacag ataaaacgaa aggcccagtc tttcgactga gcctttcgtt ttatttgatg 4740
cctggcagtt ccctactctc gcatggggag accccacact accatcggcg ctacggcgtt 4800
tcacttctga gttcggcatg gggtcaggtg ggaccaccgc gctactgccg ccaggcaaat 4860
tctgttttat cagaccgctt ctgcgttctg atttaatctg tatcaggctg aaaatcttct 4920
ctcatccgcc aaaacagaag cttgcatgcc tgcaggtcga ctctagagga tccccgggta 4980
ccgagctcga a 4991
<210>7
<211>1005
<212>DNA
<213〉Corynebacterium glutamicum
<220>
<221>CDS
<222>(1)..(1005)
<223>
<400>7
atg aac cta aag aac ccc gaa acg cca gac cgt aac ctt gct atg gag 48
Met Asn Leu Lys Asn Pro Glu Thr Pro Asp Arg Asn Leu Ala Met Glu
1 5 10 15
ctg gtg cga gtt acg gaa gca gct gca ctg gct tct gga cgt tgg gtt 96
Leu Val Arg Val Thr Glu Ala Ala Ala Leu Ala Ser Gly Arg Trp Val
20 25 30
gga cgt ggc atg aag aat gaa ggc gac ggt gcc gct gtt gac gcc atg 144
Gly Arg Gly Met Lys Asn Glu Gly Asp Gly Ala Ala Val Asp Ala Met
35 40 45
cgc cag ctc atc aac tca gtg acc atg aag ggc gtc gtt gtt atc ggc 192
Arg Gln Leu Ile Asn Ser Val Thr Met Lys Gly Val Val Val Ile Gly
50 55 60
gag ggc gaa aaa gac gaa gct cca atg ctg tac aac ggc gaa gag gtc 240
Glu Gly Glu Lys Asp Glu Ala Pro Met Leu Tyr Asn Gly Glu Glu Val
65 70 75 80
gga acc ggc ttt gga cct gag gtt gat atc gca gtt gac cca gtt gac 288
Gly Thr Gly Phe Gly Pro Glu Val Asp Ile Ala Val Asp Pro Val Asp
85 90 95
ggc acc acc ctg atg gct gag ggt cgc ccc aac gca att tcc att ctc 336
Gly Thr Thr Leu Met Ala Glu Gly Arg Pro Asn Ala Ile Ser Ile Leu
100 105 110
gca gct gca gag cgt ggc acc atg tac gat cca tcc tcc gtc ttc tac 384
Ala Ala Ala Glu Arg Gly Thr Met Tyr Asp Pro Ser Ser Val Phe Tyr
115 120 125
atg aag aag atc gcc gtg gga cct gag gcc gca ggc aag atc gac atc 432
Met Lys Lys Ile Ala Val Gly Pro Glu Ala Ala Gly Lys Ile Asp Ile
130 135 140
gaa gct cca gtt gcc cac aac atc aac gcg gtg gca aag tcc aag gga 480
Glu Ala Pro Val Ala His Asn Ile Asn Ala Val Ala Lys Ser Lys Gly
145 150 155 160
atc aac cct tcc gac gtc acc gtt gtc gtg ctt gac cgt cct cgc cac 528
Ile Asn Pro Ser Asp Val Thr Val Val Val Leu Asp Arg Pro Arg His
165 170 175
atc gaa ctg atc gca gac att cgt cgt gca ggc gca aag gtt cgt ctc 576
Ile Glu Leu Ile Ala Asp Ile Arg Arg Ala Gly Ala Lys Val Arg Leu
180 185 190
atc tcc gac ggc gac gtt gca ggt gca gtt gca gca gct cag gat tcc 624
Ile Ser Asp Gly Asp Val Ala Gly Ala Val Ala Ala Ala Gln Asp Ser
195 200 205
aac tcc gtg gac atc atg atg ggc acc ggc gga acc cca gaa ggc atc 672
Asn Ser Val Asp Ile Met Met Gly Thr Gly Gly Thr Pro Glu Gly Ile
210 215 220
atc act gcg tgc gcc atg aag tgc atg ggt ggc gaa atc cag ggc atc 720
Ile Thr Ala Cys Ala Met Lys Cys Met Gly Gly Glu Ile Gln Gly Ile
225 230 235 240
ctg gcc cca atg aac gat ttc gag cgc cag aag gca cac gac gct ggt 768
Leu Ala Pro Met Asn Asp Phe Glu Arg Gln Lys Ala His Asp Ala Gly
245 250 255
ctg gtt ctt gat cag gtt ctg cac acc aac gat ctg gtg agc tcc gac 816
Leu Val Leu Asp Gln Val Leu His Thr Asn Asp Leu Val Ser Ser Asp
260 265 270
aac tgc tac ttc gtg gca acc ggt gtg acc aac ggt gac atg ctc cgt 864
Ash Cys Tyr Phe Val Ala Thr Gly Val Thr Asn Gly Asp Met Leu Arg
275 280 285
ggc gtt tcc tac cgc gca aac ggc gca acc acc cgt tcc ctg gtt atg 912
Gly Val Ser Tyr Arg Ala Asn Gly Ala Thr Thr Arg Ser Leu Val Met
290 295 300
cgc gca aag tca ggc acc atc cgc cac atc gag tct gtc cac cag ctg 960
Arg Ala Lys Ser Gly Thr Ile Arg His Ile Glu Ser Val His Gln Leu
305 310 315 320
tcc aag ctg cag gaa tac tcc gtg gtt gac tac acc acc gcg acc 1005
Ser Lys Leu Gln Glu Tyr Ser Val Val Asp Tyr Thr Thr Ala Thr
325 330 335
<210>8
<211>335
<212>PRT
<213〉Corynebacterium glutamicum
<400>8
Met Asn Leu Lys Asn Pro Glu Thr Pro Asp Arg Asn Leu Ala Met Glu
1 5 10 15
Leu Val Arg Val Thr Glu Ala Ala Ala Leu Ala Ser Gly Arg Trp Val
20 25 30
Gly Arg Gly Met Lys Asn Glu Gly Asp Gly Ala Ala Val Asp Ala Met
35 40 45
Arg Gln Leu Ile Asn Ser Val Thr Met Lys Gly Val Val Val Ile Gly
50 55 60
Glu Gly Glu Lys Asp Glu Ala Pro Met Leu Tyr Asn Gly Glu Glu Val
65 70 75 80
Gly Thr Gly Phe Gly Pro Glu Val Asp Ile Ala Val Asp Pro Val Asp
85 90 95
Gly Thr Thr Leu Met Ala Glu Gly Arg Pro Asn Ala Ile Ser Ile Leu
100 105 110
Ala Ala Ala Glu Arg Gly Thr Met Tyr Asp Pro Ser Ser Val Phe Tyr
115 120 125
Met Lys Lys Ile Ala Val Gly Pro Glu Ala Ala Gly Lys Ile Asp Ile
130 135 140
Glu Ala Pro Val Ala His Asn Ile Asn Ala Val Ala Lys Ser Lys Gly
145 150 155 160
Ile Asn Pro Ser Asp Val Thr Val Val Val Leu Asp Arg Pro Arg His
165 170 175
Ile Glu Leu Ile Ala Asp Ile Arg Arg Ala Gly Ala Lys Val Arg Leu
180 185 190
Ile Ser Asp Gly Asp Val Ala Gly Ala Val Ala Ala Ala Gln Asp Ser
195 200 205
Asn Ser Val Asp Ile Met Met Gly Thr Gly Gly Thr Pro Glu Gly Ile
210 215 220
Ile Thr Ala Cys Ala Met Lys Cys Met Gly Gly Glu Ile Gln Gly Ile
225 230 235 240
Leu Ala Pro Met Asn Asp Phe Glu Arg Gln Lys Ala His Asp Ala Gly
245 250 255
Leu Val Leu Asp Gln Val Leu His Thr Asn Asp Leu Val Ser Ser Asp
260 265 270
Asn Cys Tyr Phe Val Ala Thr Gly Val Thr Asn Gly Asp Met Leu Arg
275 280 285
Gly Val Ser Tyr Arg Ala Asn Gly Ala Thr Thr Arg Ser Leu Val Met
290 295 300
Arg Ala Lys Ser Gly Thr Ile Arg His Ile Glu Ser Val His Gln Leu
305 310 315 320
Ser Lys Leu Gln Glu Tyr Ser Val Val Asp Tyr Thr Thr Ala Thr
325 330 335
<210>9
<211>1365
<212>DNA
<213〉Corynebacterium glutamicum
<220>
<221>CDS
<222>(1)..(1365)
<223>
<400>9
atg aat gat gag aat att caa agc tcc aac tat cag cca ttc ccg agt 48
Met Asn Asp Glu Asn Ile Gln Ser Ser Asn Tyr Gln Pro Phe Pro Ser
1 5 10 15
ttt gac gat tgg aaa cag atc gag gtg tcg ctc tta gat gtc arc gaa 96
Phe Asp Asp Trp Lys Gln Ile Glu Val Ser Leu Leu Asp Val Ile Glu
20 25 30
tcc tca cgc cat ttt tct gat ttg aaa gat agc act gat cgt tct gcg 144
Ser Ser Arg His Phe Ser Asp Leu Lys Asp Ser Thr Asp Arg Ser Ala
35 40 45
tta gat gct gcg cta gag aga gca aaa aga gct gcc gca gtt gat acc 192
Leu Asp Ala Ala Leu Glu Arg Ala Lys Arg Ala Ala Ala Val Asp Thr
50 55 60
aat gcc ata gaa gga atc ttc caa act gat cgc ggt ttt acc cat aca 240
Asn Ala Ile Glu Gly Ile Phe Gln Thr Asp Arg Gly Phe Thr His Thr
65 70 75 80
gtt gca acg cag gta ggg gct tgg gag caa caa atg gcg atg aaa ggc 288
Val Ala Thr Gln Val Gly Ala Trp Glu Gln Gln Met Ala Met Lys Gly
85 90 95
aaa cat gtt aag cct gcg ttt gac gat act cta gaa ggc ttt gag tat 336
Lys His Val Lys Pro Ala Phe Asp Asp Thr Leu Glu Gly Phe Glu Tyr
100 105 110
gtt ctc gat gca gta act ggt aga act cca atc tct cag caa tgg att 384
Val Leu Asp Ala Val Thr Gly Arg Thr Pro Ile Ser Gln Gln Trp Ile
115 120 125
aga aat ttg cac gcc gtc att ctg cgg agc caa gaa agc cac gag gtt 432
Arg Asn Leu His Ala Val Ile Leu Arg Ser Gln Glu Ser His Glu Val
130 135 140
ttt aca gcc gtt gga gtc caa aat cag gcg ctt cag aaa ggc gag tat 480
Phe Thr Ala Val Gly Val Gln Asn Gln Ala Leu Gln Lys Gly Glu Tyr
145 150 155 160
aaa act cag cca aat agt cca cag cgc tca gat gga tct gta cat gca 528
Lys Thr Gln Pro Asn Ser Pro Gln Arg Ser Asp Gly Ser Val His Ala
165 170 175
tac gcc cca gtt gaa gat act cct gct gaa atg gct aga ttt att tca 576
Tyr Ala Pro Val Glu Asp Thr Pro Ala Glu Met Ala Arg Phe Ile Ser
180 185 190
gaa ctt gaa tct aag gaa ttc tta gca gcc gag aag gtt att caa gct 624
Glu Leu Glu Ser Lys Glu Phe Leu Ala Ala Glu Lys Val Ile Gln Ala
195 200 205
gcc tat gcc cac tat gct ttc gta tgt att cat cct ttt gca gat ggg 672
Ala Tyr Ala His Tyr Ala Phe Val Cys Ile His Pro Phe Ala Asp Gly
210 215 220
aat gga cga gtt gca cga gcc ttg gct agt gtt ttt cta tac aaa gat 720
Asn Gly Arg Val Ala Arg Ala Leu Ala Ser Val Phe Leu Tyr Lys Asp
225 230 235 240
cct ggt gtc cct ctc gta atc tac caa gat caa cgc aga gat tac atc 768
Pro Gly Val Pro Leu Val Ile Tyr Gln Asp Gln Arg Arg Asp Tyr Ile
245 250 255
cat gct cta gaa gca gcg gac aag aat aac ccg ctc ctg ctg att aga 816
His Ala Leu Glu Ala Ala Asp Lys Asn Asn Pro Leu Leu Leu Ile Arg
260 265 270
ttc ttt gct gaa cga gtg acc gat act att aac tct att atc gtt gat 864
Phe Phe Ala Glu Arg Val Thr Asp Thr Ile Asn Ser Ile Ile Val Asp
275 280 285
ctc act acc ccg atc gcg ggt aaa tct ggt tcg gct aag ctt tcg gat 912
Leu Thr Thr Pro Ile Ala Gly Lys Ser Gly Ser Ala Lys Leu Ser Asp
290 295 300
gcg cta cgc ccc act cgc gta tta cca gaa tta cat gat gct gca cat 960
Ala Leu Arg Pro Thr Arg Val Leu Pro Glu Leu His Asp Ala Ala His
305 310 315 320
agg ctc caa gaa agt tta ttt aca gaa atc cga tct cga ttg gat gaa 1008
Arg Leu Gln Glu Ser Leu Phe Thr Glu Ile Arg Ser Arg Leu Asp Glu
325 330 335
gaa gga aaa agg aat ggg ttg gag ttt cta ctt caa cgg att ttt atc 1056
Glu Gly Lys Arg Asn Gly Leu Glu Phe Leu Leu Gln Arg Ile Phe Ile
340 345 350
ggt tcc cca ttc aat ctg cca gag ggc tat aac gct ttc cct gat agc 1104
Gly Ser Pro Phe Asn Leu Pro Glu Gly Tyr Asn Ala Phe Pro Asp Ser
355 360 365
tat tgt ctg acc tta gct ttc aat agc aac tct cca aaa caa atc ttc 1152
Tyr Cys Leu Thr Leu Ala Phe Asn Ser Asn Ser Pro Lys Gln Ile Phe
370 375 380
cac ccg cta tcc ata gta ata gca gct cga gat ggg aaa aga gcg agc 1200
His Pro Leu Ser Ile Val Ile Ala Ala Arg Asp Gly Lys Arg Ala Ser
385 390 395 400
agc gac ctc gtg gca gct act tct att gga tac aac ttt cac gct tac 1248
Ser Asp Leu Val Ala Ala Thr Ser Ile Gly Tyr Asn Phe His Ala Tyr
405 410 415
gga cgt gaa gtc gag cct gtt gtt act gaa agc ttt cga gaa cgt gtg 1296
Gly Arg Glu Val Glu Pro Val Val Thr Glu Ser Phe Arg Glu Arg Val
420 425 430
aaa att tac gcc gac ggg att gta gat cac ttc tta acc gaa ctg gct 1344
Lys Ile Tyr Ala Asp Gly Ile Val Asp His Phe Leu Thr Glu Leu Ala
435 440 445
aaa aag ttt caa cag aat taa 1365
Lys Lys Phe Gln Gln Asn
450
<210>10
<211>454
<212>PRT
<213〉Corynebacterium glutamicum
<400>10
Met Asn Asp Glu Asn Ile Gln Ser Ser Asn Tyr Gln Pro Phe Pro Ser
1 5 10 15
Phe Asp Asp Trp Lys Gln Ile Glu Val Ser Leu Leu Asp Val Ile Glu
20 25 30
Ser Ser Arg His Phe Ser Asp Leu Lys Asp Ser Thr Asp Arg Ser Ala
35 40 45
Leu Asp Ala Ala Leu Glu Arg Ala Lys Arg Ala Ala Ala Val Asp Thr
50 55 60
Asn Ala Ile Glu Gly Ile Phe Gln Thr Asp Arg Gly Phe Thr His Thr
65 70 75 80
Val Ala Thr Gln Val Gly Ala Trp Glu Gln Gln Met Ala Met Lys Gly
85 90 95
Lys His Val Lys Pro Ala Phe Asp Asp Thr Leu Glu Gly Phe Glu Tyr
100 105 110
Val Leu Asp Ala Val Thr Gly Arg Thr Pro Ile Ser Gln Gln Trp Ile
115 120 125
Arg Asn Leu His Ala Val Ile Leu Arg Ser Gln Glu Ser His Glu Val
130 135 140
Phe Thr Ala Val Gly Val Gln Asn Gln Ala Leu Gln Lys Gly Glu Tyr
145 150 155 160
Lys Thr Gln Pro Asn Ser Pro Gln Arg Ser Asp Gly Ser Val His Ala
165 170 175
Tyr Ala Pro Val Glu Asp Thr Pro Ala Glu Met Ala Arg Phe Ile Ser
180 185 190
Glu Leu Glu Ser Lys Glu Phe Leu Ala Ala Glu Lys Val Ile Gln Ala
195 200 205
Ala Tyr Ala His Tyr Ala Phe Val Cys Ile His Pro Phe Ala Asp Gly
210 215 220
Asn Gly Arg Val Ala Arg Ala Leu Ala Ser Val Phe Leu Tyr Lys Asp
225 230 235 240
Pro Gly Val Pro Leu Val Ile Tyr Gln Asp Gln Arg Arg Asp Tyr Ile
245 250 255
His Ala Leu Glu Ala Ala Asp Lys Asn Asn Pro Leu Leu Leu Ile Arg
260 265 270
Phe Phe Ala Glu Arg Val Thr Asp Thr Ile Asn Ser Ile Ile Val Asp
275 280 285
Leu Thr Thr Pro Ile Ala Gly Lys Ser Gly Ser Ala Lys Leu Ser Asp
290 295 300
Ala Leu Arg Pro Thr Arg Val Leu Pro Glu Leu His Asp Ala Ala His
305 3l0 315 320
Arg Leu Gln Glu Ser Leu Phe Thr Glu Ile Arg Ser Arg Leu Asp Glu
325 330 335
Glu Gly Lys Arg Asn Gly Leu Glu Phe Leu Leu Gln Arg Ile Phe Ile
340 345 350
Gly Ser Pro Phe Asn Leu Pro Glu Gly Tyr Asn Ala Phe Pro Asp Ser
355 360 365
Tyr Cys Leu Thr Leu Ala Phe Asn Ser Asn Ser Pro Lys Gln Ile Phe
370 375 380
His Pro Leu Ser Ile Val Ile Ala Ala Arg Asp Gly Lys Arg Ala Ser
385 390 395 400
Ser Asp Leu Val Ala Ala Thr Ser Ile Gly Tyr Asn Phe His Ala Tyr
405 410 415
Gly Arg Glu Val Glu Pro Val Val Thr Glu Ser Phe Arg Glu Arg Val
420 425 430
Lys Ile Tyr Ala Asp Gly Ile Val Asp His Phe Leu Thr Glu Leu Ala
435 440 445
Lys Lys Phe Gln Gln Asn
450
Claims (48)
1. the purposes of nucleic acid in genetic transcription with promoter activity, described nucleic acid comprises:
A) nucleic acid sequence SEQ .ID.NO.1, or
B) derive and on nucleic acid level, have a sequence of at least 90% identity from sequence SEQ.ID.NO.1 by nucleotide substitution, insertion or disappearance with sequence SEQ.ID.NO.1, or
C) nucleotide sequence of under stringent condition, hybridizing with nucleic acid sequence SEQ .ID.NO.1, or
D) B A)) or C) the function equivalent fragment of sequence.
2. express the purposes of unit in genetic expression for one kind, described expression unit comprises the nucleotide sequence of nucleic acid with promoter activity according to claim 1 and extra functional connection, and wherein said nucleotide sequence is guaranteed the translation of Yeast Nucleic Acid.
3. purposes according to claim 2, wherein said expression unit comprises:
E) nucleic acid sequence SEQ .ID.NO.2, or
F) derive and on nucleic acid level, have a sequence of at least 90% identity from sequence SEQ.ID.NO.2 by nucleotide substitution, insertion or disappearance with sequence SEQ.ID.NO.2, or
G) nucleotide sequence of under stringent condition, hybridizing with nucleic acid sequence SEQ .ID.NO.2, or
H) F E)) or G) the function equivalent fragment of sequence.
4. purposes according to claim 3, wherein said expression unit is made up of nucleic acid sequence SEQ .ID.NO.2.
5. nucleic acid with promoter activity, it comprises:
A) nucleic acid sequence SEQ .ID.NO.1, or
B) derive and on nucleic acid level, have a sequence of at least 90% identity from sequence SEQ.ID.NO.1 by nucleotide substitution, insertion or disappearance with sequence SEQ.ID.NO.1, or
C) nucleotide sequence of under stringent condition, hybridizing with nucleic acid sequence SEQ .ID.NO.1, or
D) A), B) or C) the function equivalent fragment of sequence,
Its precondition is to get rid of the nucleic acid with sequence SEQ.ID.NO.1.
6. express the unit for one kind, it comprises the nucleotide sequence of nucleic acid with promoter activity according to claim 5 and extra functional connection, and wherein said nucleotide sequence is guaranteed the translation of Yeast Nucleic Acid.
7. expression according to claim 6 unit, it comprises:
E) nucleic acid sequence SEQ .ID.NO.2, or
F) derive and on nucleic acid level, have a sequence of at least 90% identity from sequence SEQ.ID.NO.2 by nucleotide substitution, insertion or disappearance with sequence SEQ.ID.NO.2, or
G) nucleotide sequence of under stringent condition, hybridizing with nucleic acid sequence SEQ .ID.NO.2, or
H) E), F) or G) the function equivalent fragment of sequence,
Its precondition is to get rid of the nucleic acid with sequence SEQ.ID.NO.2.
8. compare with wild-type for one kind, change or influence the method for genetic transcription speed in the microorganism, it is realized in the following manner:
A) compare with wild-type, change the ratio promoter activity of endogenous nucleic acid in microorganism with promoter activity according to claim 1, described endogenous nucleic acid is regulated transcribing of native gene, or
B) by the nucleic acid with promoter activity according to claim 1, perhaps by have according to embodiment a) the described nucleic acid of claim 1 of the ratio promoter activity of described change with promoter activity regulate gene transcription in the microorganism, wherein said gene is allogenic for described nucleic acid with promoter activity.
9. method according to claim 8, wherein by the nucleic acid with promoter activity according to claim 1 or by have according to embodiment a) the described nucleic acid with promoter activity of the claim 1 of the ratio promoter activity of described change the adjusting of genetic transcription in the microorganism is realized in the following manner:
B1) nucleic acid that one or more are according to claim 1ly had promoter activity, has a ratio promoter activity of change under felicity condition imports in the microbial genome, so that according to claim 1ly had promoter activity, under the control of the nucleic acid of the ratio promoter activity that has change under the felicity condition, carry out transcribing of one or more native genes what import, or
B2) one or more genes are imported in the microbial genome, so that according to claim 1ly have promoter activity, under the control of the endogenous nucleic acid of the ratio promoter activity that has change under the felicity condition, carrying out transcribing of one or more quiding genes, or
B3) one or more nucleic acid constructs are imported in microorganisms, described nucleic acid construct comprises and according to claim 1ly has promoter activity, has the nucleic acid of ratio promoter activity of change and one or more nucleic acid to be transcribed of functional connection under felicity condition.
10. according to Claim 8 or 9 described methods, wherein compare with wild-type, in order to improve or to influence gene transcription speed in the microorganism,
Ah) compare with wild-type, the ratio promoter activity of the endogenous nucleic acid of transcribing in microorganism with promoter activity or adjusting native gene according to claim 1 increases, or
Bh) by the nucleic acid with promoter activity according to claim 1, perhaps by have according to embodiment a) nucleic acid of the ratio promoter activity of described increase regulate gene transcription in the microorganism, wherein said gene is allogenic for described nucleic acid with promoter activity.
11. method according to claim 10, wherein by the nucleic acid with promoter activity according to claim 1 or by have according to embodiment a) the described nucleic acid with promoter activity of the claim 1 of the ratio promoter activity of described increase the adjusting of genetic transcription in the microorganism is realized in the following manner:
Bh1) nucleic acid that one or more are according to claim 1ly had promoter activity, has a ratio promoter activity of increase under felicity condition imports in the microbial genome, so that according to claim 1ly had promoter activity, under the control of the nucleic acid of the ratio promoter activity that has increase under the felicity condition, carry out transcribing of one or more native genes what import, or
Bh2) one or more genes are imported in the microbial genome, so that according to claim 1ly have promoter activity, under the control of the endogenous nucleic acid of the ratio promoter activity that has increase under the felicity condition, carrying out transcribing of one or more quiding genes, or
Bh3) one or more nucleic acid constructs are imported in microorganisms, described nucleic acid construct comprises and according to claim 1ly has promoter activity, has the nucleic acid of ratio promoter activity of increase and one or more nucleic acid to be transcribed of functional connection under felicity condition.
12. according to Claim 8 or 9 described methods, wherein compare with wild-type, in order to reduce gene transcription speed in the microorganism,
Ar) compare with wild-type, the ratio promoter activity of endogenous nucleic acid in microorganism with promoter activity according to claim 1 reduces, and described endogenous nucleic acid is regulated transcribing of native gene, or
Br) will have according to embodiment a) nucleic acid of the ratio promoter activity of described reduction import in the microbial genome so that under the nucleic acid control of the promoter activity with reduction of described importing, carry out transcribing of native gene.
13. compare with wild-type for one kind, change or influence the method for genetic expression speed in the microorganism, it is realized by the following method:
C) compare with wild-type, change according to claim 2 or the 3 ratio expression activities of described endogenous expression unit in microorganism, the expression of native gene is regulated in described endogenous expression unit, or
D) pass through according to claim 2 or 3 described expression unit, perhaps by having according to embodiment c) claim 2 or the 3 described expression unit of the ratio expression activity of described change regulate expression of gene in the microorganism, and wherein said gene is allogenic for described expression unit.
14. method according to claim 13, wherein by according to claim 2 or 3 described expression unit, perhaps a) claim 2 of the ratio expression activity of described change or 3 described expression unit the adjusting of genetic expression in the microorganism is realized in the following manner by having according to embodiment:
D1) one or more are had the importing in the microbial genome of ratio expression activity of change under felicity condition according to claim 2 or 3 described expression unit, so that under the expression unit control that is imported, carry out the expression of one or more native genes, or
D2) one or more genes are imported in microbial genome, so as to be to have under the felicity condition change the ratio expression activity according to the expression of carrying out one or more quiding genes under claim 2 or the 3 described endogenous expression unit control, or
D3) one or more nucleic acid constructs are imported in microorganisms, what described nucleic acid construct was contained in the ratio expression activity that has change under the felicity condition treats express nucleic acid according to one or more of claim 2 or 3 described expression unit and functional connection.
15. according to claim 13 or 14 described methods, wherein compare with wild-type, in order to improve or to influence expression of gene speed in the microorganism,
Ch) compare with wild-type, increase according to claim 2 or the 3 ratio expression activities of described endogenous expression unit in microorganism, the expression of described native gene is regulated in described endogenous expression unit, or
Dh) pass through according to claim 2 or 3 described expression unit, perhaps a) regulate expression of gene in the microorganism in the claim 2 or the 3 described expression unit of the ratio expression activity of described increase by having according to embodiment, wherein said gene is allogenic for described expression unit.
16. method according to claim 15, wherein by according to claim 2 or 3 described expression unit, perhaps a) claim 2 of the ratio expression activity of described increase or 3 described expression unit the adjusting of genetic expression in the microorganism is realized in the following manner by having according to embodiment:
Dh1) one or more had the importing in the microbial genome of ratio expression activity of increase under felicity condition according to claim 2 or 3 described expression unit, so that in the expression of under the expression unit control of the ratio expression activity that has increase under the felicity condition, carrying out one or more native genes that is imported, or
Dh2) one or more genes are imported in microbial genome, so as to be to have under the felicity condition increase the ratio expression activity according to the expression of carrying out one or more quiding genes under claim 2 or the 3 described endogenous expression unit control, or
Dh3) one or more nucleic acid constructs are imported in microorganisms, what described nucleic acid construct was contained in the ratio expression activity that has increase under the felicity condition treats express nucleic acid according to one or more of claim 2 or 3 described expression unit and functional connection.
17. according to claim 13 or 14 described methods, wherein compare with wild-type, in order to reduce expression of gene speed in the microorganism,
Cr) compare with wild-type, reduce according to claim 2 or the 3 ratio expression activities of described endogenous expression unit in microorganism, the expression of described native gene is regulated in wherein said endogenous expression unit, or
Dr) will be according to embodiment cr) described expression unit with ratio expression activity of reduction imports in the microbial genome, so that under the expression unit control of the expression activity with reduction of described importing, carry out the expression of native gene.
18. each described method according to Claim 8-17, wherein said gene is selected from the proteinic nucleic acid of coding raw albumen and non-raw albumen amino acid biosynthetic pathway, the proteinic nucleic acid of coding nucleotide and nucleosides biosynthetic pathway, the proteinic nucleic acid of coding organic acid biosynthetic pathway, the proteinic nucleic acid of coding lipid and fatty acid biosynthetic pathway, the proteinic nucleic acid of coding dibasic alcohol biosynthetic pathway, the proteinic nucleic acid of coding carbohydrate biosynthetic pathway, the proteinic nucleic acid of coding aromatic compound biosynthetic pathway, the proteinic nucleic acid of coding VITAMIN biosynthetic pathway, the proteinic nucleic acid of coding cofactor biosynthetic pathway and the proteinic nucleic acid of codase biosynthetic pathway, if wherein suitable, described gene can comprise other regulatory element.
19. method according to claim 18, wherein said protein from amino acid biosynthetic pathway is selected from E.C. 2.7.2.4., aspartate-semialdehyde dehydrogenase, diaminopimelate dehydrogenase, diaminapimelate decarboxylase, the dihydrodipicolinic acid synthase, the dihydrodipicolinate reductase, glyceraldehyde-3-phosphate dehydrogenase, the glycerol 3-phosphate acid kinase, pyruvate carboxylase, triose-phosphate isomerase, transcriptional LuxR, transcriptional LysR1, transcriptional LysR2, oxysuccinic acid-quinone oxidoreductase, glucose-6-phosphate dehydrogenase (G6PD), 6-Phosphogluconic dehydrogenase, transketolase, transaldolase, homoserine O-Transacetylase, cystathionine Gamma synthase, the cystathionine beta lyase, serine hydroxymethylase, the O-acetylhomoserine sulfhydrylase, Methylene tetrahydrofolate reductase, phosphoserine aminotransferase, phosphoserine phosphatase, serine acetyltransferase, homoserine dehydrogenase, homoserine kinase, threonine synthase, Threonine is exported sub-carrier, threonine dehydra(ta)se, pyruvic oxidase, Methionin output, the vitamin H ligase enzyme, cysteine synthase I, cysteine synthase II, actimide dependent form methionine synthases, non-actimide dependent form methionine synthases, sulfate adenylyl transferase subunit 1 and 2, adenosine phosphate-phosphinylidyne sulfate reduction enzyme, ferredoxin-sulfite reductase, ferredoxin NADP reductase enzyme, 3-phosphoglyceric acid dehydroenase, the RXA00655 instrumentality, the RXN2910 instrumentality, Arginyl-tRNA synthetase, Phosphoenolpyruvate carboxylase, Threonine is discharged albumen, serine hydroxymethylase, fructose-1, the protein RXA077 of sulfate reduction, the protein RXA248 of sulfate reduction, the protein RXA247 of sulfate reduction, protein OpcA, 1-Phosphofructokinase and fructose-1, 6-diphosphate kinases.
20. an expression cassette, it comprises:
A) at least a according to claim 2 or 3 described expression unit, and
B) at least a other treated express nucleic acid, and
C) other Genetic Control element under felicity condition,
Wherein at least a expression unit and other treat that the express nucleic acid functional nucleotide sequence links together, and described other treats that the express nucleic acid sequence is allogenic for described expression unit.
21. expression cassette according to claim 20, wherein said other treats that the express nucleic acid sequence is selected from the proteinic nucleic acid of coding raw albumen and non-raw albumen amino acid biosynthetic pathway, the proteinic nucleic acid of coding nucleotide and nucleosides biosynthetic pathway, the proteinic nucleic acid of coding organic acid biosynthetic pathway, the proteinic nucleic acid of coding lipid and fatty acid biosynthetic pathway, the proteinic nucleic acid of coding dibasic alcohol biosynthetic pathway, the proteinic nucleic acid of coding carbohydrate biosynthetic pathway, the proteinic nucleic acid of coding aromatic compound biosynthetic pathway, the proteinic nucleic acid of coding VITAMIN biosynthetic pathway, the proteinic nucleic acid of coding cofactor biosynthetic pathway and the proteinic nucleic acid of codase biosynthetic pathway.
22. expression cassette according to claim 21, wherein said protein from amino acid biosynthetic pathway is selected from E.C. 2.7.2.4., aspartate-semialdehyde dehydrogenase, diaminopimelate dehydrogenase, diaminapimelate decarboxylase, the dihydrodipicolinic acid synthase, the dihydrodipicolinate reductase, glyceraldehyde-3-phosphate dehydrogenase, the glycerol 3-phosphate acid kinase, pyruvate carboxylase, triose-phosphate isomerase, transcriptional LuxR, transcriptional LysR1, transcriptional LysR2, oxysuccinic acid-quinone oxidoreductase, glucose-6-phosphate dehydrogenase (G6PD), 6-Phosphogluconic dehydrogenase, transketolase, transaldolase, homoserine O-Transacetylase, cystathionine Gamma synthase, the cystathionine beta lyase, serine hydroxymethylase, the O-acetylhomoserine sulfhydrylase, Methylene tetrahydrofolate reductase, phosphoserine aminotransferase, phosphoserine phosphatase, serine acetyltransferase, homoserine dehydrogenase, homoserine kinase, threonine synthase, Threonine is exported sub-carrier, threonine dehydra(ta)se, pyruvic oxidase, Methionin output, the vitamin H ligase enzyme, cysteine synthase I, cysteine synthase II, actimide dependent form methionine synthases, non-actimide dependent form methionine synthases, sulfate adenylyl transferase subunit 1 and 2, adenosine phosphate-phosphinylidyne sulfate reduction enzyme, ferredoxin-sulfite reductase, ferredoxin NADP reductase enzyme, 3-phosphoglyceric acid dehydroenase, the RXA00655 instrumentality, the RXN2910 instrumentality, Arginyl-tRNA synthetase, Phosphoenolpyruvate carboxylase, Threonine is discharged albumen, serine hydroxymethylase, fructose-1, the protein RXA077 of sulfate reduction, the protein RXA248 of sulfate reduction, the protein RXA247 of sulfate reduction, protein OpcA, 1-Phosphofructokinase and fructose-1, 6-diphosphate kinases.
23. an expression vector, it comprises according to each described expression cassette in the claim 20 to 22.
24. a genetically modified microorganism, wherein said genetic modification cause comparing with wild-type, change or influence at least a gene transcription speed, and depend on:
A) change at least a ratio promoter activity with endogenous nucleic acid of promoter activity according to claim 1 in the microorganism, described endogenous nucleic acid is regulated transcribing of at least a native gene, or
B) by the nucleic acid with promoter activity according to claim 1, perhaps by have according to embodiment a) the described nucleic acid of claim 1 of the ratio promoter activity of described change with promoter activity regulate genetic transcription in the microorganism, wherein said gene is allogenic for described nucleic acid with promoter activity.
25. genetically modified microorganism according to claim 24, wherein by the nucleic acid with promoter activity according to claim 1, perhaps by have according to embodiment a) the described nucleic acid with promoter activity of the claim 1 of the ratio promoter activity of described change the adjusting of genetic transcription in the microorganism is realized in the following manner:
B1) nucleic acid that one or more are according to claim 1ly had promoter activity, has a ratio promoter activity of change under felicity condition imports in the microbial genome, so that according to claim 1ly had promoter activity, under the control of the nucleic acid of the ratio promoter activity that has change under the felicity condition, carry out transcribing of one or more native genes what import, or
B2) one or more genes are imported in the microbial genome, so that according to claim 1ly have promoter activity, under the control of the endogenous nucleic acid of the ratio promoter activity that has change under the felicity condition, carrying out transcribing of one or more quiding genes, or
B3) one or more nucleic acid constructs are imported in microorganisms, described nucleic acid construct comprises and according to claim 1ly has promoter activity, has the nucleic acid of ratio promoter activity of change and one or more nucleic acid to be transcribed of functional connection under felicity condition.
26. according to claim 24 or 25 described genetically modified microorganisms, it is compared with wild-type, at least a gene has the transcription rate that improves or influence, wherein
Ah) compare with wild-type, the ratio promoter activity of endogenous nucleic acid in microorganism with promoter activity according to claim 1 increases, and wherein said endogenous nucleic acid is regulated transcribing of native gene, or
Bh) by the nucleic acid with promoter activity according to claim 1, perhaps by having according to embodiment ah) nucleic acid of the ratio promoter activity of described increase regulates gene transcription in the microorganism, and wherein said gene is allogenic for described nucleic acid with promoter activity.
27. genetically modified microorganism according to claim 26, wherein by the nucleic acid with promoter activity according to claim 1, perhaps by have according to embodiment a) the described nucleic acid with promoter activity of the claim 1 of the ratio promoter activity of described increase the adjusting of genetic transcription in the microorganism is realized in the following manner:
Bh1) nucleic acid that one or more are according to claim 1ly had promoter activity, has a ratio promoter activity of increase under felicity condition imports in the microbial genome, so that had promoter activity, under the control of the nucleic acid of the ratio promoter activity that has increase under the felicity condition, carry out transcribing of one or more native genes what import, or
Bh2) one or more genes are imported in the microbial genome, so that according to claim 1ly have promoter activity, under the control of the endogenous nucleic acid of the ratio promoter activity that has increase under the felicity condition, carrying out transcribing of one or more quiding genes, or
Bh3) one or more nucleic acid constructs are imported in microorganisms, described nucleic acid construct comprises and according to claim 1ly has promoter activity, has the nucleic acid of ratio promoter activity of increase and one or more nucleic acid to be transcribed of functional connection under felicity condition.
28. according to claim 24 or 25 described genetically modified microorganisms, it is compared with wild-type, at least a gene has the transcription rate of reduction, wherein
Ar) compare with wild-type, at least a ratio promoter activity of endogenous nucleic acid in microorganism with promoter activity according to claim 1 reduces, and wherein said endogenous nucleic acid is regulated transcribing of at least a native gene, or
Br) one or more are had according to embodiment a) nucleic acid of the promoter activity of described reduction import in the microbial genome so that under the nucleic acid control of the promoter activity with reduction of described importing, carry out transcribing of at least a native gene.
29. a genetically modified microorganism, wherein said genetic modification cause comparing with wild-type, change or influence at least a expression of gene speed, and depend on:
C) compare with wild-type, change according to claim 2 or the 3 ratio expression activities of described at least a endogenous expression unit in microorganism, the expression of at least a native gene is regulated in wherein said endogenous expression unit, or
D) pass through according to claim 2 or 3 described expression unit, perhaps a) regulate expression of gene in the microorganism in the claim 2 or the 3 described expression unit of the ratio expression activity of described change by having according to embodiment, wherein said gene is allogenic for described expression unit.
30. genetically modified microorganism according to claim 29, wherein by according to claim 2 or 3 described expression unit, perhaps a) claim 2 of the ratio expression activity of described change or 3 described expression unit the adjusting of genetic expression in the microorganism is realized in the following manner by having according to embodiment:
D1) one or more had the importing in the microbial genome of ratio expression activity of change under felicity condition according to claim 2 or 3 described expression unit, so that described importing in the ratio expression activity that has change under the felicity condition according to claim 2 or 3 described expression unit control under carry out the expression of one or more native genes, or
D2) one or more genes are imported in microbial genome, so as the ratio expression activity that has change under the being set forth in felicity condition according to claim 2 or 3 described endogenous expression unit control under carry out the expression of one or more quiding genes, or
D3) one or more nucleic acid constructs are imported in microorganisms, what described nucleic acid construct was contained in the ratio expression activity that has change under the felicity condition treats express nucleic acid according to one or more of claim 2 or 3 described expression unit and functional connection.
31. according to claim 29 or 30 described genetically modified microorganisms, it is compared with wild-type, at least a gene has the expression speed that improves or influence, wherein
Ch) compare with wild-type, increase according to claim 2 or the 3 ratio expression activities of described at least a endogenous expression unit in microorganism, the expression of native gene is regulated in wherein said endogenous expression unit, or
Dh) pass through according to claim 2 or 3 described expression unit, perhaps a) regulate expression of gene in the microorganism in the claim 2 or the 3 described expression unit of the ratio expression activity of described increase by having according to embodiment, wherein said gene is allogenic for described expression unit.
32. genetically modified microorganism according to claim 31, wherein by according to claim 2 or 3 described expression unit, perhaps a) claim 2 of the ratio expression activity of described increase or 3 described expression unit the adjusting of genetic expression in the microorganism is realized in the following manner by having according to embodiment:
Dh1) one or more had the importing in the microbial genome of ratio expression activity of increase under felicity condition according to claim 2 or 3 described expression unit, so that imported in the ratio expression activity that has increase under the felicity condition according to claim 2 or 3 described expression unit control under carry out the expression of one or more native genes, or
Dh2) one or more genes are imported in microbial genome, so as to be to have under the felicity condition increase the ratio expression activity according to the expression of carrying out one or more quiding genes under claim 2 or the 3 described endogenous expression unit control, or
Dh3) one or more nucleic acid constructs are imported in microorganisms, what described nucleic acid construct was contained in the ratio expression activity that has increase under the felicity condition treats express nucleic acid according to one or more of claim 2 or 3 described expression unit and functional connection.
33. according to claim 29 or 30 described genetically modified microorganisms, it is compared with wild-type, at least a gene has the expression speed of reduction, wherein
Cr) compare with wild-type, reduce according to claim 2 or the 3 ratio expression activities of described at least a endogenous expression unit in microorganism, the expression of at least a native gene is regulated in wherein said endogenous expression unit, or
Dr) one or more had the importing in the microbial genome of expression activity of reduction, so that under the claim 2 of the expression activity that is imported or 3 described expression unit control, carry out at least a expression of gene with reduction according to claim 2 or 3 described expression unit.
34. a genetically modified microorganism, it comprises the expressing gene for the treatment of according to claim 2 or 3 described expression unit and functional connection, and wherein said gene is allogenic for described expression unit.
35. genetically modified microorganism according to claim 34, it comprises according to each described expression cassette in the claim 20 to 22.
36. according to each described genetically modified microorganism among the claim 24-35, wherein said gene is selected from the proteinic nucleic acid of coding raw albumen and non-raw albumen amino acid biosynthetic pathway, the proteinic nucleic acid of coding nucleotide and nucleosides biosynthetic pathway, the proteinic nucleic acid of coding organic acid biosynthetic pathway, the proteinic nucleic acid of coding lipid and fatty acid biosynthetic pathway, the proteinic nucleic acid of coding dibasic alcohol biosynthetic pathway, the proteinic nucleic acid of coding carbohydrate biosynthetic pathway, the proteinic nucleic acid of coding aromatic compound biosynthetic pathway, the proteinic nucleic acid of coding VITAMIN biosynthetic pathway, the proteinic nucleic acid of coding cofactor biosynthetic pathway and the proteinic nucleic acid of codase biosynthetic pathway, if wherein suitable, described gene also comprises other regulatory element.
37. genetically modified microorganism according to claim 36, wherein said protein from amino acid biosynthetic pathway is selected from E.C. 2.7.2.4., aspartate-semialdehyde dehydrogenase, diaminopimelate dehydrogenase, diaminapimelate decarboxylase, the dihydrodipicolinic acid synthase, the dihydrodipicolinate reductase, glyceraldehyde-3-phosphate dehydrogenase, the glycerol 3-phosphate acid kinase, pyruvate carboxylase, triose-phosphate isomerase, transcriptional LuxR, transcriptional LysR1, transcriptional LysR2, oxysuccinic acid-quinone oxidoreductase, glucose-6-phosphate dehydrogenase (G6PD), 6-Phosphogluconic dehydrogenase, transketolase, transaldolase, homoserine O-Transacetylase, cystathionine Gamma synthase, the cystathionine beta lyase, serine hydroxymethylase, the O-acetylhomoserine sulfhydrylase, Methylene tetrahydrofolate reductase, phosphoserine aminotransferase, phosphoserine phosphatase, serine acetyltransferase, homoserine dehydrogenase, homoserine kinase, threonine synthase, Threonine is exported sub-carrier, threonine dehydra(ta)se, pyruvic oxidase, Methionin output, the vitamin H ligase enzyme, cysteine synthase I, cysteine synthase II, actimide dependent form methionine synthases, non-actimide dependent form methionine synthases, sulfate adenylyl transferase subunit 1 and 2, adenosine phosphate-phosphinylidyne sulfate reduction enzyme, ferredoxin-sulfite reductase, ferredoxin NADP reductase enzyme, 3-phosphoglyceric acid dehydroenase, the RXA00655 instrumentality, the RXN2910 instrumentality, Arginyl-tRNA synthetase, Phosphoenolpyruvate carboxylase, Threonine is discharged albumen, serine hydroxymethylase, fructose-1, the protein RXA077 of sulfate reduction, the protein RXA248 of sulfate reduction, the protein RXA248 of sulfate reduction, protein OpcA, 1-Phosphofructokinase and fructose-1, 6-diphosphate kinases.
38. one kind by cultivating the method for preparing biosynthetic products according to each described genetically modified microorganism among the claim 24-37.
39. one kind by cultivating according to claim 24,25, the microorganism of each described genetic modification prepares the method for Methionin in 31 or 32, wherein said gene is selected from the nucleic acid of coding E.C. 2.7.2.4., the nucleic acid of coding aspartate-semialdehyde dehydrogenase, the nucleic acid of coding diaminopimelate dehydrogenase, the nucleic acid of coding diaminapimelate decarboxylase, coding dihydrodipicolinic acid synthase's nucleic acid, coding dihydrodipicolinate reductase's nucleic acid, the nucleic acid of encoding glycerol aldehyde-3-phosphate dehydrogenase, the kinase whose nucleic acid of coding 3-phoshoglyceric acid, the nucleic acid of coding pyruvate carboxylase, the nucleic acid of coding triose-phosphate isomerase, the nucleic acid of encoding transcription instrumentality LuxR, the nucleic acid of encoding transcription instrumentality LysR1, the nucleic acid of encoding transcription instrumentality LysR2, the nucleic acid of coding oxysuccinic acid-quinone oxidoreductase, the nucleic acid of coding glucose-6-phosphate dehydrogenase (G6PD), the nucleic acid of coding 6-Phosphogluconic dehydrogenase, the nucleic acid of coding transketolase, the nucleic acid of coding transaldolase, the nucleic acid of coding Methionin output, the nucleic acid of the plain ligase enzyme of encoding human, the nucleic acid of coding Arginyl-tRNA synthetase, the nucleic acid of coding Phosphoenolpyruvate carboxylase, encoding fructose-1, the nucleic acid of 6-diphosphatase, the nucleic acid of coded protein OpcA, the nucleic acid of coding 1-Phosphofructokinase and the kinase whose nucleic acid of coding fructose-1, 6-diphosphate.
40. according to the described method of claim 39, wherein said genetically modified microorganism is compared with wild-type, additionally have at least a in the following activity of increase, described activity is selected from the aspartokinase enzymic activity, the aspartate-semialdehyde dehydrogenase activity, the diaminopimelate dehydrogenase activity, the diaminapimelate decarboxylase activity, dihydrodipicolinic acid synthase's activity, dihydrodipicolinate reductase's activity, the glyceraldehyde-3-phosphate dehydrogenase activity, the 3-phoshoglyceric acid kinase activity, the pyruvate carboxylase activity, the triose-phosphate isomerase activity, the activity of transcriptional LuxR, the activity of transcriptional LysR1, the activity of transcriptional LysR2, oxysuccinic acid-quinone oxidoreductase activity, the glucose-6-phosphate dehydrogenase (G6PD) activity, the 6-Phosphogluconic dehydrogenase activity, TKA, the transaldolase activity, Methionin output is active, the Arginyl-tRNA synthetase activity, the Phosphoenolpyruvate carboxylase activity, the fructose-1 activity, protein OpcA activity, the 1-Phosphofructokinase activity, fructose-1, 6-diphosphate kinase activity and vitamin H ligase enzyme activity.
41. according to claim 39 or 40 described methods, wherein said genetically modified microorganism is compared with wild-type, additionally have at least a in the following activity of reduction, described activity is selected from the threonine dehydra(ta)se activity, homoserine O-acetyltransferase activity, O-acetyl-homoserine sulfhydrylase activity, the phosphoenolpyruvate carboxykinase activity, the pyruvate oxidation enzymic activity, the homoserine kinase activity, homoserine dehydrogenase activity, Threonine output is active, Threonine is discharged protein-active, asparaginase activity, aspartate decarboxylase activity and threonine synthase activity.
42. one kind by cultivating according to claim 24,25, each described genetically modified microorganism prepares the method for methionine(Met) in 31 or 32, and wherein said gene is selected from the nucleic acid of coding E.C. 2.7.2.4., the nucleic acid of coding aspartate-semialdehyde dehydrogenase, the nucleic acid of coding homoserine dehydrogenase, the nucleic acid of encoding glycerol aldehyde-3-phosphate dehydrogenase, the kinase whose nucleic acid of coding 3-phoshoglyceric acid, the nucleic acid of coding pyruvate carboxylase, the nucleic acid of coding triose-phosphate isomerase, the nucleic acid of coding homoserine O-Transacetylase, the nucleic acid of coding cystathionine Gamma synthase, the nucleic acid of coding cystathionine beta lyase, the nucleic acid of encoding serine hydroxymethyl transferases, the nucleic acid of coding O-acetylhomoserine sulfhydrylase, the nucleic acid of coding Methylene tetrahydrofolate reductase, the nucleic acid of coding phosphoserine aminotransferase, the nucleic acid of coding phosphoserine phosphatase, the nucleic acid of encoding serine Transacetylase, the nucleic acid of encoding aminothiopropionic acid synthase I, the nucleic acid of encoding aminothiopropionic acid synthase II, the nucleic acid of coding actimide dependent form methionine synthases, the encode nucleic acid of non-actimide dependent form methionine synthases, the nucleic acid of coding sulfate adenylyl transferase, the nucleic acid of coding phosphor adenosine monophosphate phosphinylidyne sulfate reduction enzyme, the nucleic acid of coding ferredoxin-sulfite reductase, the nucleic acid of coding ferredoxin NADPH-reductase enzyme, the nucleic acid of coding ferredoxin, the nucleic acid of the protein RXA077 of coding sulfate reduction, the nucleic acid of the protein RXA248 of coding sulfate reduction, the nucleic acid of the protein RXA247 of coding sulfate reduction, the nucleic acid of the nucleic acid of coding RXA0655 instrumentality and coding RXN2910 instrumentality.
43. according to the described method of claim 42, wherein said genetically modified microorganism is compared with wild-type, additionally have at least a in the following activity of increase, described activity is selected from the aspartokinase enzymic activity, the aspartate-semialdehyde dehydrogenase activity, homoserine dehydrogenase activity, the glyceraldehyde-3-phosphate dehydrogenase activity, the 3-phoshoglyceric acid kinase activity, the pyruvate carboxylase activity, the triose-phosphate isomerase activity, homoserine O-acetyltransferase activity, the cystathionine Gamma synthase activity, cystathionine beta lyase activity, the serine hydroxymethylase activity, O-acetylhomoserine sulfhydrylase activity, the Methylene tetrahydrofolate reductase activity, the phosphoserine aminotransferase activity, the phosphoserine phosphatase activity, the serine acetyltransferase activity, cysteine synthase I activity, cysteine synthase II activity, actimide dependent form methionine synthases activity, non-actimide dependent form methionine synthases activity, the sulfate adenylyl transferase activity, adenosine phosphate-phosphinylidyne sulfate reduction enzymic activity, ferredoxin-sulfite reductase activity, ferredoxin NADPH-reductase activity, the ferredoxin activity, the activity of the protein RXA077 of sulfate reduction, the activity of the protein RXA248 of sulfate reduction, the activity of the protein RXA247 of sulfate reduction, the activity of the activity of RXA655 instrumentality and RXN2910 instrumentality.
44. according to claim 42 or 43 described methods, wherein said genetically modified microorganism is compared with wild-type, additionally have at least a in the following activity of reduction, described activity is selected from homoserine kinase activity, threonine dehydra(ta)se activity, threonine synthase activity, meso diaminopimelic acid D-dehydrogenase activity, phosphoenolpyruvate carboxykinase activity, pyruvate oxidation enzymic activity, dihydrodipicolinate synthase's activity, dihydrodipicolinate reductase's activity and diamino-pyridine formic acid decarboxylase.
45. one kind by cultivating according to claim 24,25, each described genetically modified microorganism prepares the method for Threonine in 31 or 32, wherein said gene is selected from the nucleic acid of coding E.C. 2.7.2.4., the nucleic acid of coding aspartate-semialdehyde dehydrogenase, the nucleic acid of encoding glycerol aldehyde-3-phosphate dehydrogenase, the kinase whose nucleic acid of coding 3-phoshoglyceric acid, the nucleic acid of coding pyruvate carboxylase, the nucleic acid of coding triose-phosphate isomerase, the nucleic acid of coding homoserine kinase, the nucleic acid of coding threonine synthase, the coding Threonine is exported the nucleic acid of sub-carrier, the nucleic acid of coding glucose-6-phosphate dehydrogenase (G6PD), the nucleic acid of coding transaldolase, the nucleic acid of coding transketolase, the nucleic acid of coding oxysuccinic acid-quinone oxidoreductase, the nucleic acid of coding 6-Phosphogluconic dehydrogenase, the nucleic acid of coding Methionin output, the nucleic acid of the plain ligase enzyme of encoding human, the nucleic acid of coding Phosphoenolpyruvate carboxylase, the coding Threonine is discharged proteic nucleic acid, encoding fructose-1, the nucleic acid of 6-diphosphatase, the proteinic nucleic acid of coding OpcA, the nucleic acid of coding 1-Phosphofructokinase, the nucleic acid of coding kinase whose nucleic acid of fructose-1, 6-diphosphate and coding homoserine dehydrogenase.
46. according to the described method of claim 45, wherein said genetically modified microorganism is compared with wild-type, additionally have at least a in the following activity of increase, described activity is selected from the aspartokinase enzymic activity, the aspartate-semialdehyde dehydrogenase activity, the glyceraldehyde-3-phosphate dehydrogenase activity, the 3-phoshoglyceric acid kinase activity, the pyruvate carboxylase activity, the triose-phosphate isomerase activity, the threonine synthase activity, Threonine is exported sub-carrier activity, the transaldolase activity, TKA, the glucose-6-phosphate dehydrogenase (G6PD) activity, oxysuccinic acid-quinone oxidoreductase activity, the homoserine kinase activity, vitamin H ligase enzyme activity, the Phosphoenolpyruvate carboxylase activity, Threonine is discharged protein-active, protein OpcA activity, the 1-Phosphofructokinase activity, the fructose-1, 6-diphosphate kinase activity, the fructose-1 activity, 6-Phosphogluconic dehydrogenase activity and homoserine dehydrogenase activity.
47. according to claim 45 or 46 described methods, wherein said genetically modified microorganism is compared with wild-type, additionally have at least a in the following activity of reduction, described activity is selected from the threonine dehydra(ta)se activity, homoserine O-acetyltransferase activity, the serine hydroxymethylase activity, O-acetylhomoserine sulfhydrylase activity, meso diaminopimelic acid D-dehydrogenase activity, the phosphoenolpyruvate carboxykinase activity, the pyruvate oxidation enzymic activity, dihydrodipicolinic acid synthase's activity, dihydrodipicolinate reductase's activity, asparaginase activity, the aspartate decarboxylase activity, Methionin output is active, the acetolactate synthase activity, ketol-acid reduction isomerase activity, the branched-amino transferase active, actimide dependent form methionine synthases activity, non-actimide dependent form methionine synthases activity, dihydroxyl-sour dehydratase activity and diamino-pyridine formic acid decarboxylase.
48. according to each described method among the claim 38-47, wherein said biosynthetic products is isolating and be purifying from substratum under proper condition from substratum behind culturing step and/or in during the culturing step.
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DE102004035074.4 | 2004-07-20 | ||
DE200410035074 DE102004035074A1 (en) | 2004-07-20 | 2004-07-20 | P1-34 expression units |
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EP (1) | EP1819831A2 (en) |
JP (1) | JP2008506401A (en) |
CN (1) | CN1989257A (en) |
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Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
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CN106062176A (en) * | 2014-01-02 | 2016-10-26 | 特雷里斯公司 | Compositions and methods for biological production of amino acids in hydrogenotrophic microorganisms |
CN114015632A (en) * | 2020-12-01 | 2022-02-08 | 廊坊梅花生物技术开发有限公司 | Genetic engineering bacterium for producing L-threonine and construction method and application thereof |
CN114787369A (en) * | 2019-06-28 | 2022-07-22 | Cj第一制糖株式会社 | Process for producing sulfur-containing amino acid or derivative thereof |
Families Citing this family (2)
Publication number | Priority date | Publication date | Assignee | Title |
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BRPI0712219A2 (en) | 2006-05-24 | 2012-03-13 | Evonik Degussa Gmbh | process for the preparation of l-methionine |
US20090325244A1 (en) | 2006-10-24 | 2009-12-31 | Basf Se | Method of increasing gene expression using modified codon usage |
Family Cites Families (2)
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JP4623825B2 (en) * | 1999-12-16 | 2011-02-02 | 協和発酵バイオ株式会社 | Novel polynucleotide |
US7141388B2 (en) * | 2000-11-15 | 2006-11-28 | Archer-Daniels-Midland Company | Nucleotide sequences for transcriptional regulation in corynebacterium glutamicum |
-
2004
- 2004-07-20 DE DE200410035074 patent/DE102004035074A1/en not_active Withdrawn
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2005
- 2005-07-16 CN CNA2005800242404A patent/CN1989257A/en active Pending
- 2005-07-16 BR BRPI0513238-0A patent/BRPI0513238A/en not_active IP Right Cessation
- 2005-07-16 WO PCT/EP2005/007753 patent/WO2006008098A2/en active Application Filing
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Cited By (4)
Publication number | Priority date | Publication date | Assignee | Title |
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CN106062176A (en) * | 2014-01-02 | 2016-10-26 | 特雷里斯公司 | Compositions and methods for biological production of amino acids in hydrogenotrophic microorganisms |
CN114787369A (en) * | 2019-06-28 | 2022-07-22 | Cj第一制糖株式会社 | Process for producing sulfur-containing amino acid or derivative thereof |
CN114787369B (en) * | 2019-06-28 | 2023-11-28 | Cj第一制糖株式会社 | Process for producing sulfur-containing amino acid or derivative thereof |
CN114015632A (en) * | 2020-12-01 | 2022-02-08 | 廊坊梅花生物技术开发有限公司 | Genetic engineering bacterium for producing L-threonine and construction method and application thereof |
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WO2006008098A3 (en) | 2006-06-15 |
JP2008506401A (en) | 2008-03-06 |
WO2006008098A2 (en) | 2006-01-26 |
EP1819831A2 (en) | 2007-08-22 |
BRPI0513238A (en) | 2008-04-29 |
DE102004035074A1 (en) | 2006-02-16 |
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