CN1597987A - Process for testing SARS virus genome segment by silicon shell nano particle - Google Patents
Process for testing SARS virus genome segment by silicon shell nano particle Download PDFInfo
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- CN1597987A CN1597987A CN 200410046626 CN200410046626A CN1597987A CN 1597987 A CN1597987 A CN 1597987A CN 200410046626 CN200410046626 CN 200410046626 CN 200410046626 A CN200410046626 A CN 200410046626A CN 1597987 A CN1597987 A CN 1597987A
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Abstract
The invention discloses a method of detecting the genome of the SARS virus with silicon nanometer particles. It builds a sandwich model for detecting the SARS virus, distills and purifies the virus genome to the sample containing the SARS virus genome with the self-regulating cDNA modified with the SARS virus genome, and uses the silicon fluorescence nanometer bougie modified with the cDNA complementary with the differential sequence of the SARS virus genome segment and the glass chip to detect the SARS virus gene segment. The advantages are rapidness, high sensitivity, high specificity and good reliability.
Description
Technical field:
The present invention relates to a kind of detection method of SARS virus, be specifically related to a kind of method of utilizing silicon shell nano-probe the SARS virus genome to be carried out purifying and detection.
Background technology:
At present, the method that generally detects SARS virus has three classes: molecular Biological Detection method (PCR detection), immunological method (antibody test), cytology method (cell cultures).Simple PCR detection method and is polluted easily because amplified production has stronger non-specificly, false positive, false negative phenomenon occur, so situation about can't make a definite diagnosis can occur.Immunological method is based on this viral antibody that whether exists in viral protein detection patient or the suspected patient blood, and serum antibody IgM the earliest occurred taking about 7 days, and the generation of IgG antibody then after 10, just peaks about 20 days.There has been virus in general patient at firm adstante febre in the blood, but antibody also do not grow up, so can make the doctor be difficult to judge the existence of SARS virus with antibody detection method merely.Cell culture processes is the laboratory detection means that develops the earliest, can observe directly virion under electron microscope, thereby very accurate.But the technology height, complicated operation, required time is long, and is quite high to equipment requirements, is unsuitable for clinical detection.
Summary of the invention:
Technical problem to be solved by this invention is to utilize the sandwich model of virus detection and the high accuracy of silicon core-shell nanoparticles highly sensitive and hybridization detection that the SARS virus genomic fragment is detected, and detects existing false positive of SARS virus and false negative problem to overcome general molecular biology method.
The present invention solves the problems of the technologies described above the employing following technical proposals.A kind of silicon core-shell nanoparticles detects the method for SARS virus genomic fragment: one: make up the detection model of sandwich structure, promptly make up by with SARS virus genomic fragment to be detected, be marked with the silicon shell fluorescent nano probe of fluorescence nano detection signal and the detection model of the similar sandwich structure that can form with the oligonucleotide probe that glass-chip links.Two: design is carried out gene segment each probe sequence that detects and the primer sequence that detects sequence and pcr amplification to SARS virus, according to the SARS genome sequence, analyze the SARS virus genome by BLAST, filter out 2 probe sequences that do not have homology with human and other viral genome, one of them is as the sequence of silicon shell magnetic Nano probe and the sequence of silicon shell fluorescent nano probe, the sequence of the probe that another section conduct is connected with the glass-chip substrate.And the sequence of 100bp that comprises these 2 sections sequences is as the genomic detection sequence of SARS virus.Again with primer express2.0 primer-design software design 1 cover PCR primer.Three: synthetic and preparation is used for the silicon shell magnetic Nano probe of SARS virus gene viruses group extraction and purification and silicon shell fluorescent nano probe and the glass-chip that special SARS virus genomic fragment is carried out fluoroscopic examination, the magnetic nanoparticle and the surface amination fluorescent nano particle of preparation are modified with biotinylated bovine serum albumin and Streptavidin, connect then and go up synthetic cDNA, be prepared into and be modified with silicon shell magnetic Nano probe and the fluorescent nano probe that has 35 base complementrity cDNA sequences with the SARS virus genome; The bovine serum albumin and the Streptavidin of modified biological elementization are prepared into the glass-chip substrate on the aldehyde radical glass-chip of buying.Four: detect, its detailed process is: 1), hybridization, the sample of silicon shell magnetic Nano probe and SARS virus gene segment and other non-SARS virus gene segment is hybridized, 2), magnetic separates, and utilizes the magnetic resolution effect of silicon shell magnetic nanoparticles that the SARS virus genome is separated from biased sample and purifying comes out.3), pcr amplification, the SARS virus genome of purifying carries out pcr amplification by a pair of specific primer, obtains the amplified production of 100bp.4), fluoroscopic examination, the fluorescent nano probe that 35 complementary base sequences thereof is arranged with amplified production again with amplified production and the glass-chip that is modified with 34 complementary base sequences thereof equally hybridize with a kind of model of similar sandwich structure, then chip is scanned detection with the laser co-focusing fluorescent microscope.
The method that silicon core-shell nanoparticles of the present invention detects the SARS virus genomic fragment has following advantage:
The present invention utilizes the magnetic Nano probe that the gene segment of SARS virus is extracted, thereby the gene segment of SARS virus purifying from the sample of the gene segment that contains many non-SARS virus is come out, avoid directly this sample is reduced to minimum as nonspecific amplified production that the template of pcr amplification may cause, and control false-positive appearance to a certain extent.
The characteristics that the present invention is superior to simple PCR detection method are that it has utilized the hypersensitivity of PCR detection method, so might accomplish SARS patient is carried out early detection.Simultaneously, it has overcome the non-specific phenomenon that exists in the simple amplified production that is produced by the PCR detection technique again, detects and these products are further confirmed by utilizing the sandwich assay model that the base sequence of pcr amplification product is hybridized.In addition in the sandwich assay model; to join ruthenium pyridine fluorescence dye in a large number as the silicon shell fluorescent nano probe of fluoroscopic examination mark is wrapped in and has in the middle of the light-protection silicon shell; compare with the method that directly probe sequence is marked on the dye molecule commonly used, have the effect of the photobleaching of signal amplification and anti-fluorescent signal.
Description of drawings:
Fig. 1 is a sandwich assay model diagram of the present invention;
1-silicon shell fluorescent nano probe wherein
2-can modify the oligonucleotide probe in glass-chip
3-SARS viral genome segment
4-glass-chip substrate
Fig. 2 is the schema of detection method of the present invention;
Fig. 3 is the laser co-focusing fluorescent microscope scanning result figure of detection embodiment of the present invention;
Wherein (its fluorescence intensity level is: 33) in the 5-contrast
6-sample 1 (SARS virus cDNA content 6 * 10
-12Mol, its fluorescence intensity level is: 307)
7-sample 2 (SARS virus cDNA content 3 * 10
-12Mol, its fluorescence intensity level is: 159)
Embodiment:
Now in conjunction with the accompanying drawings the present invention is made and further specifying.
One, the sandwich model of SARS virus gene segment detection.
As shown in Figure 1, this model is made up of another section oligonucleotide sequence that cDNA segment, silicon shell fluorescent nano probe, the glass-chip of SARS virus gene links.With the cDNA segment of SARS virus gene respectively with silicon shell fluorescent nano probe on one section oligonucleotide sequence and can hybridize reflection under suitable condition with another section oligonucleotide sequence that glass-chip links, form the hybridization complex of similar sandwich structure.This hybridization complex can with special glass-chip coupling.Be coupled to hybridization complex on the glass-chip because the fluorescence scale effect of fluorescent nano probe, and inspire the intense fluorescence that can detect with the laser co-focusing fluorescent microscope.
Two, design is carried out each probe sequence of gene segment detection and the primer sequence of detection sequence and pcr amplification to SARS virus.
According to NCBI (National Center for Biotechnology Information) sars coronavirus (the NC_004718 strain of NCBI and the gi33115118 strain) whole genome sequence that the website provided, analyze the SARS virus genome by BLAST, filter out 2 probe sequences that do not have homology with human and other viral genome, one of them is as the sequence of silicon shell magnetic Nano probe and the sequence of silicon shell fluorescent nano probe, the sequence of the probe that another section conduct is connected with the glass-chip substrate.And the sequence of 100bp that comprises these 2 sections sequences is as the genomic detection sequence of SARS virus.Again with primer express2.0 primer-design software design 1 cover PCR primer.Their concrete sequence is as follows:
Silicon shell magnetic Nano probe sequence:
5’-TCATAGAGCC?TGTGTTGTAG?ATTGCGGACA?TACTT-Biotin-3’
Silicon shell fluorescent nano probe sequence:
5’-TCATAGAGCC?TGTGTTGTAG?ATTGCGGACA?TACTT-biotin-3’
The probe sequence that is connected with the glass-chip substrate:
5’-biotin-CATCCACGAA?TTCATGATCA?ACATCCCTAT?TTCT-3’
SARS virus detects sequence (being the pcr amplification zone):
5’-GATGGTAATA?AGATAGCTGA?CAAGTATGTC?CGCAATCTAC?AACACAGGCT
CTATGAGTGT?CTCTATAGAA?ATAGGGATGT?TGATCATGAA?TTCGTGGATG-3’
The PCR primer:
Upstream primer:
5’-GATGGTAATA?AGATAGCTGA?CAAGT-3’
Downstream primer:
5’-CATCCACGAA?TTCATGATCA-3’
Three, preparation silicon shell magnetic Nano probe and silicon shell fluorescent nano probe and glass-chip.
Silicon shell magnetic Nano probe preparation: will be suspended in the 0.1M acetum solution with the surface amination ferroferric oxide magnetic nanoparticle of the big or small 60-100 nanometer of reverse microemulsion method preparation, after the ultra-sonic oscillation 10 minutes, add 3 milliliters of usefulness acetone and water-soluble triazine triazole solution, stirred 1 hour under the room temperature.Respectively after the phosphoric acid buffer washing with acetone and ultrapure water and 10nM, disperse with phosphoric acid buffer, add biotinylated bovine serum albumin, 4 ℃ of following continuously stirring 24 hours, phosphoric acid buffer washing 2-3 time, add Streptavidin again, stir under the room temperature more than 4 hours, phosphoric acid buffer washing 2-3 time adds synthetic cDNA, 4 ℃ of following continuously stirring 24 hours, the phosphoric acid buffer washing is standby.
Silicon shell fluorescent nano probe: it is ultrasonic to contain the fluorescent nano particle that joins ruthenium pyridine fluorescence dye with the kernel of the about 60-100 nanometer of size of reverse microemulsion method preparation, be suspended in the acetum of 20 milliliters of 1mM, add 20 microlitre aminosilane reagent WD-52, continuously stirring 1 hour, with being suspended in the 0.1M acetum after the ultrapure water washing, after the ultra-sonic oscillation 10 minutes, add 3 milliliters of usefulness acetone and water-soluble triazine triazole solution, stirred 1 hour under the room temperature.Respectively after the phosphoric acid buffer washing with acetone and ultrapure water and pH7.4, disperse with phosphoric acid buffer, add biotinylated bovine serum albumin, 4 ℃ of following continuously stirring 24 hours, phosphoric acid buffer washing 2-3 time, add Streptavidin again, stir under the room temperature more than 4 hours, PBS washing 2-3 time adds synthetic cDNA, 4 ℃ of following continuously stirring 24 hours, the phosphoric acid buffer washing is standby.
Glass-chip preparation: on the slide of aldehyde radical modification, drip biotinylated bovine serum albumin on the surface of buying, place 4 ℃ of refrigerators, biotinylated bovine serum albumin is adsorbed on the slide, taking out slide after 24 hours washes gently with phosphoric acid buffer, drip Streptavidin in the position of the biotinylated bovine serum albumin of lining again, in 4 ℃ of refrigerators, placed 24 hours, wash standby gently with phosphoric acid buffer.
Four, detect.
See shown in Figure 2ly, its flow process is as follows: 1, hybridization, at 55 ℃, hybridization is 30 minutes in the hybridization buffer of 6 * SSC, 0.1%SDS with magnetic Nano probe for preparing and the sample that contains SARS virus gene segment and other non-SARS virus gene segment.
2, magnetic separates, and hybridization finishes, and the EP pipe that reactant is housed is placed on the magnetic separator, will be adsorbed on the tube wall with the target segment on the probe hybridization on the magnetic nano particle with magnetic separator, again with phosphoric acid buffer washing 2-3 time.Then magnetic nano particle is suspended in a small amount of sterilized water, 95 ℃ of sex change place frozen water that the target of hybridizing on the magnetic nano-probe is dissociated from magnetic nano particle immediately after 5 minutes.After the quick oscillation several seconds, the EP pipe is placed on the magnetic separator, magnetic nano particle is adsorbed in tube wall and target is dissolved in the sterilized water again.It is standby that the supernatant solution that absorption contains pure target is made the required template of pcr amplification reaction.
3, pcr amplification, the condition of pcr amplification reaction: 95 ℃ of 5min; 95 ℃ of 30s, 55 ℃ of 15s (each annealing temperature repeats 3 circulations, steps back temperature then and descends 1 ℃), 72 ℃ of 15s, totally 18 circulations; 95 ℃ of 30s, 55 ℃ of 15s, 72 ℃ of 15s, totally 20 circulations; 72 ℃ of 15min.
4, fluoroscopic examination will and can be connected on the glass-chip probe sequence with silicon shell fluorescent nano probe and pcr amplification product and hybridize 30min at 55 ℃ in the hybridization buffer of 6 * SSC, 0.1%SDS.Then reaction mixture is dripped the position that adds Streptavidin on slide.Again slide is placed in the wet box room temperature and places more than 2 hours, wash gently with phosphoric acid buffer and sterilized water again, dry standby.With FV500-IX70 laser co-focusing fluorescent microscope chip is scanned.Its detected result as shown in Figure 3, wherein 5 expression contrasts, 6 expression samples, 1,7 expression sample 2.According to the result who repeatedly adds up, the fluorescence intensity level of negative control is 30 ± 20, and the fluorescent value of different samples is all greater than 160.Therefore the existence that can determine SARS virus in the test sample according to fluorescent value whether.
Claims (4)
1, a kind of silicon core-shell nanoparticles detects the method for SARS virus genomic fragment, it is characterized in that: one, make up the detection model of sandwich structure, promptly make up by with SARS virus genomic fragment to be detected, be marked with the silicon shell fluorescent nano probe of fluorescence nano detection signal and the detection model of the similar sandwich structure that can form with the oligonucleotide probe that glass-chip links; Two, design is carried out each probe sequence of gene segment detection and the primer sequence of detection sequence and pcr amplification to SARS virus, according to the SARS genome sequence, analyze the SARS virus genome by BLAST, filter out 2 probe sequences that do not have homology with human and other viral genome, one of them is as the sequence of silicon shell magnetic Nano probe and the sequence of silicon shell fluorescent nano probe, the sequence of the probe that another section conduct is connected with the glass-chip substrate; And the sequence of 100bp that comprises these 2 sections sequences is as the genomic detection sequence of SARS virus; Again with primer express2.0 primer-design software design 1 cover PCR primer; Three, synthetic and preparation is used for the silicon shell magnetic Nano probe of SARS virus gene viruses group extraction and purification and silicon shell fluorescent nano probe and the glass-chip that special SARS virus genomic fragment is carried out fluoroscopic examination, the magnetic nanoparticle and the surface amination fluorescent nano particle of preparation are modified with biotinylated bovine serum albumin and Streptavidin, connect then and go up synthetic cDNA, be prepared into and be modified with silicon shell magnetic Nano probe and the fluorescent nano probe that has 35 base complementrity cDNA sequences with the SARS virus genome; The bovine serum albumin of modified biological elementization and Streptavidin are prepared into the glass-chip substrate on the aldehyde radical glass-chip; Four, detect, its detailed process is: 1) hybridization: the sample of silicon shell magnetic Nano probe and SARS virus gene segment and other non-SARS virus gene segment hybridizes 2) magnetic separation: utilize the magnetic resolution effect of silicon shell magnetic nanoparticles that the SARS virus genome is separated from biased sample and purifying comes out; 3) pcr amplification: the SARS virus genome of purifying carries out pcr amplification by a pair of specific primer, obtains the amplified production of 100bp; 4) fluoroscopic examination: the fluorescent nano probe that 35 complementary base sequences thereof is arranged with amplified production again with amplified production and the glass-chip that is modified with 34 complementary base sequences thereof equally hybridize with a kind of model of similar sandwich structure, then chip is scanned detection with the laser co-focusing fluorescent microscope.
2, silicon core-shell nanoparticles according to claim 1 detects the method for SARS virus genomic fragment, it is characterized in that being prepared as of silicon shell magnetic Nano probe: will be suspended in the 0.1M acetum solution with the surface amination ferroferric oxide magnetic nanoparticle of the big or small 60-100 nanometer of reverse microemulsion method preparation, after the ultra-sonic oscillation 10 minutes, add 3 milliliters of usefulness acetone and water-soluble triazine triazole solution, stirred 1 hour under the room temperature; Respectively after the phosphoric acid buffer washing with acetone and ultrapure water and 10nM, disperse with phosphoric acid buffer, add biotinylated bovine serum albumin, 2-6 ℃ of following continuously stirring 24 hours, phosphoric acid buffer washing 2-3 time, add Streptavidin again, stir under the room temperature more than 4 hours, phosphoric acid buffer washing 2-3 time adds synthetic cDNA, 2-6 ℃ of following continuously stirring 24 hours, the phosphoric acid buffer washing is standby.
3, silicon core-shell nanoparticles according to claim 1 detects the method for SARS virus genomic fragment, it is characterized in that being prepared as of silicon shell fluorescent nano probe: it is ultrasonic to be that the kernel of 60-100 nanometer contains the fluorescent nano particle of connection ruthenium pyridine fluorescence dye with the size of reverse microemulsion method preparation, be suspended in the acetum of 20 milliliters of 1mM, add 20 microlitre aminosilane reagent WD-52, continuously stirring 1 hour, with being suspended in the 0.1M acetum after the ultrapure water washing, after the ultra-sonic oscillation 10 minutes, add 3 milliliters of usefulness acetone and water-soluble triazine triazole solution, stirred 1 hour under the room temperature, respectively after the phosphoric acid buffer washing with acetone and ultrapure water and pH7.4, disperse with phosphoric acid buffer, add biotinylated bovine serum albumin, 2-6 ℃ of following continuously stirring 24 hours, phosphoric acid buffer washing 2-3 time, add Streptavidin again, stir more than 4 hours under the room temperature, phosphoric acid buffer washing 2-3 time, add synthetic cDNA, 2-6 ℃ of following continuously stirring 24 hours, the phosphoric acid buffer washing is standby.
4, silicon core-shell nanoparticles according to claim 1 detects the method for SARS virus genomic fragment, it is characterized in that being prepared as of glass-chip: on the slide of aldehyde radical modification, drip biotinylated bovine serum albumin on the surface, under 2-6 ℃ of environment, biotinylated bovine serum albumin is adsorbed on the slide, taking out slide after 24 hours washes gently with phosphoric acid buffer, drip Streptavidin in the position of the biotinylated bovine serum albumin of lining again, placed 24 hours under 2-6 ℃ environment, wash standby gently with phosphoric acid buffer.
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Cited By (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN102811943A (en) * | 2009-12-11 | 2012-12-05 | 韩国化学研究院 | Heterodimer Core-shell Nanoparticle In Which Raman-active Molecules Are Located At A Binding Portion Of A Nanoparticle Heterodimer, Use Thereof, And Method For Preparing Same |
| CN106754860A (en) * | 2016-11-22 | 2017-05-31 | 上海纳米技术及应用国家工程研究中心有限公司 | A kind of method to interface Rapid Modification Avidin based on liposome |
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| Publication number | Priority date | Publication date | Assignee | Title |
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| CN101220356B (en) * | 2007-01-09 | 2011-06-15 | 中国科学院上海应用物理研究所 | Low copy biochemical reaction method |
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Cited By (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN102811943A (en) * | 2009-12-11 | 2012-12-05 | 韩国化学研究院 | Heterodimer Core-shell Nanoparticle In Which Raman-active Molecules Are Located At A Binding Portion Of A Nanoparticle Heterodimer, Use Thereof, And Method For Preparing Same |
| CN102811943B (en) * | 2009-12-11 | 2015-08-19 | 韩国化学研究院 | With dimer nanometer nuclear shell nano-structure, its purposes and preparation method that the raman active molecule being positioned at interparticle joint portion marks |
| CN106754860A (en) * | 2016-11-22 | 2017-05-31 | 上海纳米技术及应用国家工程研究中心有限公司 | A kind of method to interface Rapid Modification Avidin based on liposome |
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